LOCUS       DASQVK010000001         2275 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_63276, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000001 DASQVK010000000
VERSION     DASQVK010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2275)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2275)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2275
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63276"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..217
                     /locus_tag="VE567_00005"
     CDS             <1..217
                     /locus_tag="VE567_00005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47254.1"
                     /translation="AIGSSKRGRGAATGDGPGNGEGAPSIPESRGWLPNVAALTLNPE
                     VLPAVFPLISPQPELACEREPENPHSR"
     gene            275..1528
                     /locus_tag="VE567_00010"
     CDS             275..1528
                     /locus_tag="VE567_00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HYZ47255.1"
                     /translation="MNQAQIAIWSITGLSIAGVILRPWRLPEAVWAVSGAVALVAFGL
                     LPIADAWTGIAKGADVYFFLAGMMLIAELARSEGLFDWLAGIAASHARGSAKRLFALI
                     YMVGIIVTAFLSNDATAVVLTPAVYAAARAARADPLPHLFICAFVANAASFVLPISNP
                     ANLVVFDGHMPPLLQWLARFGLPSLVSIAVTYAVLRWSQRAHLREPTEADPHVPWLQR
                     GGIVVGIALIFAAILLLIVSALGFDLGFPTFVAGVATLIIVMFVRGFRTIAALRHISF
                     GILPLVAGLFVFVEALDRTGLLGFLSDLLRRGAQDAPALTAWACALVAGFGSNIANNL
                     PVGLLSGAAIQMDSPPPLVTDAILIGVDLGPNLSVTGSLATILWLVALRREGEHVTAF
                     EFLKLGVLIMPISLVLAIGALFVGR"
     gene            complement(1535..2218)
                     /gene="rpe"
                     /locus_tag="VE567_00015"
     CDS             complement(1535..2218)
                     /gene="rpe"
                     /locus_tag="VE567_00015"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011415424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HYZ47256.1"
                     /translation="MTDVLIAPSILSADFARLGEEVRAVAAAGADWIHVDVMDGHFVP
                     NITMGPQIVQAIRPLTEKLFDVHLMIAPADPYLEAFAEAGADRLIVHVEAGPHLHRSL
                     QTIRELGKSAGVTLCPATSETTIEHVLDEVDLVLVMTVNPGFGGQSFIRSQLEKIRRI
                     RAMIAGRPIRLEVDGGITPETAVEAVQAGADTLVAGSSVFRGGTEASYRDNIAAIRRA
                     VAVARGEMV"
BASE COUNT          344 a          736 c          718 g          477 t
ORIGIN      
        1 ggccatcggg tcctccaaac gcgggcgcgg cgccgctact ggagacgggc cgggaaatgg
       61 ggaaggcgcg ccttctatac cggaatcccg gggctggcta cccaatgtcg cagcgctcac
      121 gctgaacccg gaagtgctgc cggccgtttt tccgctgatt tccccgcagc cggaactggc
      181 ctgtgagcgc gagcccgaaa acccgcactc tcgatgatcc gcggccggcc aatgcgcgat
      241 cgcgccaagc gcggattgcc gcggggacgg cggcttgaac caagcgcaaa tcgcgatctg
      301 gagcatcacc gggcttagca tagcaggggt gattctgcgc ccgtggcgct tgcctgaggc
      361 ggtctgggcc gtcagcgggg cagtcgcgct ggtcgcgttc ggcctgctgc cgattgccga
      421 cgcgtggacc ggcatagcca agggcgcgga cgtttacttt ttcctggccg gcatgatgtt
      481 gatcgccgaa ctcgcgcgca gcgaaggcct gttcgattgg cttgccggga ttgctgcttc
      541 gcatgcgcgc ggctctgcga agcgattgtt tgcgctcatc tacatggtcg gcattatcgt
      601 cacggctttc ctgtcgaacg atgcaacggc ggtcgtgctg acgcccgcag tctacgccgc
      661 cgcgcgcgcc gcgcgtgccg atcctttgcc gcatcttttc atctgcgcgt tcgtcgcgaa
      721 tgcggcgagt ttcgtgctgc cgatctccaa tccagccaac ctcgtcgtgt tcgacggtca
      781 tatgccgccg cttctgcaat ggctggcgcg gttcggcctg ccctcattgg tttcaattgc
      841 agtgacttac gcggttttgc gatggtcaca acgcgcgcac cttcgcgagc ccacggaagc
      901 ggacccgcac gttccttggc tgcaacgcgg gggcattgtg gtcggcattg ccctgatctt
      961 tgcggcgatc ttgcttctca tcgtctcagc gctcggcttc gatctcggct ttccgacatt
     1021 tgttgccggc gtggcgacgc tgattatcgt gatgtttgtg cgcggtttcc gaacaatcgc
     1081 agcgttgcgg cacatatctt ttggcatcct gccgcttgtc gccgggctgt tcgtctttgt
     1141 cgaggcgctc gaccgcaccg ggcttttggg cttcctcagc gatctgttgc ggcgcggggc
     1201 gcaggatgcg ccggcactga ccgcctgggc gtgcgcgctt gtcgccgggt tcggcagcaa
     1261 tattgccaac aatcttcccg tcggactgct ctccggtgcc gcgattcaga tggattcacc
     1321 accgccgctg gtgaccgacg ccatcctcat cggtgtcgat cttgggccca atctgtcggt
     1381 cacgggttcc ctcgcgacaa ttctttggtt ggtggcgctc cggcgcgagg gcgagcatgt
     1441 caccgccttc gaattcttga agctcggcgt cctcatcatg ccgatatcgc tggtgctggc
     1501 gatcggcgcc ctgtttgttg gcaggtgaag cacctcacac catctcgccg cgagcgaccg
     1561 caacagcgcg cctgatcgcg gcgatgttgt cgcgataaga agcttccgtt ccgcctctaa
     1621 agaccgagga gccggcgaca agcgtgtcgg cgcccgcttg cacggcttca accgccgttt
     1681 ccggcgtgat gccgccgtcg acttcgagcc ggattggccg cccggcgatc attgcccgga
     1741 tgcggcggat cttttccagc tgtgagcgga tgaaactctg cccgccgaaa ccgggattga
     1801 cggtcatcac cagcacgaga tcgacctcgt cgaggacatg ttcgatcgtc gtctccgacg
     1861 tcgccgggca gagcgtcacc cccgcacttt tgccgagctc gcgaatcgtc tgcagcgagc
     1921 gatgcagatg cggccccgcc tcgacatgca cgatcagccg gtcagcgccg gcctcggcaa
     1981 aggcttcgag atacgggtcc gccggcgcta tcatcagatg cacgtcgaag agtttttccg
     2041 tcagcggccg gatcgcctgc acgatttgcg gacccatcgt gatgttgggg acgaaatgcc
     2101 cgtccatgac atcgacgtga atccagtcgg cgcccgccgc ggcaaccgcg cgtacctcct
     2161 cgcccagccg cgcaaagtcg gccgagagaa tggagggggc aatcagaacg tcggtcatgt
     2221 gatttccgtc tccggcgcct ataatgggcg ggttcgccga cgcccgggac tgcac
//
LOCUS       DASQVK010000002         2531 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_158206,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000002 DASQVK010000000
VERSION     DASQVK010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2531
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158206"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..243
                     /locus_tag="VE567_00020"
     CDS             <1..243
                     /locus_tag="VE567_00020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47257.1"
                     /translation="VKAGDHGRALDLHRKLLTLWNAVASDNLPACTRYAQSMQGLAKT
                     FSRAPMPEASPAQQLAIARALEGLGASSGERVEAAE"
     gene            407..1369
                     /locus_tag="VE567_00025"
     CDS             407..1369
                     /locus_tag="VE567_00025"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYZ47258.1"
                     /translation="MKEFAGKIAVITGGGTGMGRELARQLVAEGCNVAMCDISAEAMA
                     ETKRLCEIERLPQGLRVTTHVADVSIEDQLTRFRDELIEQQATDKIHLLFNNAGIGGG
                     GSLFTSTREQWERTFNICWSGVYFGVRTFLPLLLKADEGHIVNTSSVNGFWASVGLGV
                     SHTAYSAAKFAVKGFTEALITDLRLNAPHIKCSVVMPGHIGTSIVSNSRKVQSGSDQL
                     TPNEIMQTRQRLNGMGIDTSALSDDQIQEIAIERAKKFHDEAPTTAAQAARIILDGVK
                     ADRWRILVGDDAHKLDERVRRSPEKAYTAEFYQSLVEEVGWRLG"
     gene            complement(1580..2044)
                     /locus_tag="VE567_00030"
     CDS             complement(1580..2044)
                     /locus_tag="VE567_00030"
                     /inference="COORDINATES: protein motif:HMM:NF019370.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GcrA family cell cycle regulator"
                     /protein_id="HYZ47259.1"
                     /translation="MPAIAPTWTTERVERLKNCFEAGFSCREIAADIGVSRNAVIGKL
                     SRLNLTRDAGGEPPVRKTAGAAPAARAAPRRHYAMFAAYAEPERPPEPIDDARRCSLF
                     ELNEARCRWPISTPGAADFCFCGNTPLDGLPYCSGHCRLAYRPGSRQRVARG"
     gene            complement(2117..2314)
                     /locus_tag="VE567_00035"
     CDS             complement(2117..2314)
                     /locus_tag="VE567_00035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47260.1"
                     /translation="MATEKAETDRIPVTLALSTIGYLEKLVRQGTHGTSVPGVARTLI
                     EEGIRLAIKDGLLSIRDNGKA"
BASE COUNT          485 a          760 c          847 g          439 t
ORIGIN      
        1 gtcaaggccg gtgaccacgg gcgggcgctc gatttgcaca ggaaactgct gacgctgtgg
       61 aacgcggtgg cgtccgataa cctgccggcc tgcacacgct acgcgcagtc catgcagggc
      121 ttggcgaaaa cgttttcgcg ggcgccgatg cccgaagctt cgcccgccca gcaactcgca
      181 atcgcgcggg cgctggaagg gttgggcgcc tcaagcggcg aacgcgtcga ggcggccgaa
      241 tgaagcggcc gcctcagcgt ctcaagtata tgttgttgtt gcggcagatc tggttggtga
      301 cgctgtcgtg ctatagaaac agaacctgtt acgcggggag tgtttgagca gaaattccgc
      361 gtcacagaca ttgaaaagaa tttcaaggaa ggagttgcga tcggacatga aggaatttgc
      421 tggaaagatc gccgttatca ccggaggcgg caccggcatg ggccgggaac tcgcgcgcca
      481 gcttgtcgcc gaaggctgca atgtcgcgat gtgcgacatc tcggcggagg cgatggcgga
      541 aacgaaacgg ctgtgcgaga tcgaaaggct gccgcaggga ttgcgcgtca ccacccacgt
      601 cgctgacgtt tcgatcgagg atcagctgac gcgattccgc gacgagctga tcgagcagca
      661 ggcgaccgac aagatccatc tgctgttcaa caatgccggc atcggcggtg gcggcagcct
      721 gttcaccagc acgcgcgagc agtgggaacg gaccttcaac atctgctgga gcggcgtcta
      781 tttcggcgtc cgcaccttcc tgccgctatt gctgaaagcc gacgagggcc acatcgtcaa
      841 cacctccagc gtcaacggct tctgggcgtc ggtcggcctg ggggtgtcgc atactgccta
      901 cagcgccgcc aaattcgcgg tgaagggatt taccgaagcg ctgatcacgg atctgcggct
      961 gaacgcgccg catatcaaat gctcggtggt gatgccggga catatcggaa cctcgatcgt
     1021 ctccaattcg cgcaaagtgc agagcggctc cgatcagctc acgcccaacg agatcatgca
     1081 gacgcggcag cggttgaacg gcatgggcat cgacacgtca gcgctgtcgg acgatcagat
     1141 ccaggagatc gcaatcgagc gcgcgaagaa attccatgac gaggcgccga ccacggcggc
     1201 gcaggcggcg aggatcatcc tcgacggcgt caaggccgac cgctggcgca tcctggtcgg
     1261 cgacgacgcc cacaagcttg acgagcgcgt gcgccggtcg ccggaaaaag cctatacggc
     1321 ggaattctac cagagcctgg tcgaggaggt cggctggcga ctgggatgag tggcctggtt
     1381 aaatcggctg ctcggcggct ccccttacct ctcccgcttg cgggggagtt gctgcgcatc
     1441 ggaacatgcg cagcgggtgg gggctccctc cacacggata gcgtcaatcg ccgagacacc
     1501 cccaccccaa ccctcccccg caagcgcgag aggcggcgca tttccgtcgc ggtcgaacac
     1561 cggagctaaa ctcccggctt tagccgcggg cgacgcgctg gcgcgagccg ggccggtagg
     1621 cgaggcggca gtggccggag caatagggca ggccgtcgag cggcgtgttg ccgcagaagc
     1681 agaaatcggc cgcgcctggc gtgctgatcg gccagcggca tcgcgcctcg ttcaattcga
     1741 acagggagca gcggcgtgca tcgtcgatcg gttcgggtgg ccgctccggc tcggcatagg
     1801 cggcgaacat cgcatagtgg cgcctcggcg ctgctcttgc cgccggcgcg gcgccggcag
     1861 ttttgcgcac cggcggctcg ccgcccgcgt cgcgcgtcag gttgaggcgg gagagcttgc
     1921 cgatgacggc gttgcggctg accccgatgt cggcagcgat ttcgcggcag gagaagccgg
     1981 cctcaaagca gtttttcagc cgttcgacgc gttcggtggt ccaggtcggt gcgatggcgg
     2041 gcatgccagg ggtaccttgt tagggatgag ctccaactgt ctcggccaca tccaaaaccc
     2101 tcggcgccgc agggctttac gctttgccat tgtcccggat cgacagcaga ccgtccttga
     2161 tggcgaggcg gatgccttcc tcgatcaagg tccgggcgac gccgggaacg ctggtgccgt
     2221 gggtgccctg ccgcaccagt ttctccagat acccaatggt cgagagcgcc aaagtcacgg
     2281 gaatgcggtc ggtctcggct ttttctgtgg ccatgccaaa aagctagcct cttactcgtg
     2341 tactgaaaag tagcttttaa gactctattt agttatgcag aaggttgtca atcgaattcg
     2401 cccagccgtt gaaatcgcaa aatcggggcg cagggcagcc tccgaggtcc gcaaggacct
     2461 cgggcgggca ggtggggaac gtcggagtgg gaagaagcgc ggactaccca tgcaccaccg
     2521 ccttcgcgat c
//
LOCUS       DASQVK010000003         3851 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_253263,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000003 DASQVK010000000
VERSION     DASQVK010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3851
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253263"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..290
                     /locus_tag="VE567_00040"
     CDS             <1..290
                     /locus_tag="VE567_00040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47261.1"
                     /translation="GTVLIAWAATLELRIADGLVAFDGRAIRALIGTLAASALLSAAG
                     AALAPFGAPVRAVALLLLFWPAQWAALRFGLADTDRRELGSVSRRLKLVSA"
     gene            complement(280..1386)
                     /locus_tag="VE567_00045"
     CDS             complement(280..1386)
                     /locus_tag="VE567_00045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HYZ47262.1"
                     /translation="MNTSLTFDAAPAAAETPRTAPRAGDDAVLLRAAAELTRELSAAN
                     PRIYWADFLVSAVVGYAALVATVMAGSLGWALAFGAVAVLALYRAESFIHELTHVKHA
                     TLPGFRSAWNALIGVPMMAPSFMYEGVHNLHHAKTRYGTVEDPEYLPLALMRPWTLPA
                     FILIAALAPIGLIIRYAVLAPLSLLSAKLREMVVARYSGLVINPRFRRRPPEGEAKAL
                     WQRLEVATSLWAIVLVTLVATGSLPLRAFLIILAVASAVAVLNQVRTLVAHLWENEGE
                     PMTVTAQYLDSVNVPPPALLPALWAPVGLRYHALHHLLPSVPYHNLGIAHRRLSAVLA
                     PESPYFRANYKGLAGLMGKIGLSSVTRGGPAFKR"
     gene            1496..2647
                     /locus_tag="VE567_00050"
     CDS             1496..2647
                     /locus_tag="VE567_00050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HYZ47263.1"
                     /translation="MSELQIVPVADQAGRRAFVDYAFAHYAHDPNWVAPLKGEASGMI
                     TPGKNAWFTHAEAQLFLAKRGGKTVGRISAHIDRLALDQPPEQGFGPGTGFWGFLDAD
                     DEAIARTLIAEAEAWLKGRGMTRALGPISSSIWEEPGLLIQGHDHPPTVMMGHQDARY
                     QAWIEGLGYTKAKDLLTYELDIRKELPPLVQRIVTAGEKNPRINVRKVNKARFADEAE
                     IILHILNDAWSDNWGFVPLTDPEVAEVGTKLKPIVFEDLIYIAEVEGEPVAFMITLPD
                     LNEPLKPLNGSLLPFGWAKLLLWLRRPKARTMRVPLMGVVKRLQASRLASQLAFMMIE
                     YSRRAAVARYGSSRGEIGWILEDNQGMVAIADTIESRVNKVYRIYQKQL"
     gene            2998..>3851
                     /locus_tag="VE567_00055"
     CDS             2998..>3851
                     /locus_tag="VE567_00055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018250510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E/G"
                     /protein_id="HYZ47264.1"
                     /translation="MLIDARHREETRVAVVKGTRIEEFDFESAERKQLKGNIYLAKVT
                     RVEPSLQAAFVDYGGNRHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAEEEALDAQ
                     DDADEEQSAGRDAEHAEEGEDAPRPEAVSGEGHGGADDTVESLRERRMRLRRRYKIQD
                     VIRRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTPQGGGISRKISNAADRK
                     RLKSIMTELKLPRTMGCIVRTAGLSRTKTEIKRDFDYLARLWDEIRDRTLRASAPALI
                     YGDSDLIKR"
BASE COUNT          718 a         1249 c         1256 g          628 t
ORIGIN      
        1 cgggcactgt cctgattgcc tgggcggcaa cgctggaact gcgcatcgcc gacgggctgg
       61 tcgcgttcga cggccgcgcg atccgcgcac tgattggcac gctggcggca tcggcgttgc
      121 tctcggcggc cggggccgct ctcgctccct tcggcgctcc cgttcgcgcg gtcgctctgc
      181 tgctgctttt ctggccggcg caatgggcgg ccttgcgctt cggcctcgcc gataccgacc
      241 gtcgggagtt ggggagcgta tcgcgacggc tgaagctggt cagcgcttga acgccggccc
      301 gccgcgcgtg accgagctca ggccgatctt ccccatcaat cccgccagcc ccttgtagtt
      361 cgccctgaag taaggcgact ctggggcaag tacggcggat agccggcgat gagcgatgcc
      421 gagattgtga tagggcacgc tcggcaacag gtgatgaagg gcgtggtagc gcaggcccac
      481 cggtgcccag agcgcaggaa gcagcgcggg cggcggcaca ttgacgctgt cgagatactg
      541 ggcagtgacc gtcatcggct cgccctcatt ctcccacaga tgcgcgacca aggtacgcac
      601 ctggttcagc acggcaacgg cggaagcgac ggcgagtatg atcaggaacg cgcgtagcgg
      661 cagcgagccg gtcgccacca aagtcaccag cacgatggcc cagaggctgg tggcgacttc
      721 gagccgttgc cagagcgcct tggcctcgcc ttcgggcgga cggcggcgaa aacgcggatt
      781 gatcaccagc cccgaatagc gcgccaccac catctcgcgc agcttcgcgc tcagcagcga
      841 cagcggcgcc agtacggcat agcgtatgat gaggccgatc ggcgccagcg cggcgatcag
      901 gatgaatgcc ggcagggtcc agggccgcat cagcgcgagc ggcagatatt cgggatcttc
      961 caccgtgccg tagcgcgtct ttgcgtgatg gagattgtgc acgccctcat acatgaagga
     1021 cggcgccatc atcggcacgc cgatcaacgc attccacgcc gagcggaagc cgggcaacgt
     1081 cgcatgcttc acatgggtga gctcgtggat gaagctttcc gcccggtaga gtgccagcac
     1141 cgcaaccgcg ccgaacgcca gcgcccagcc caggctcccc gccatgaccg tcgctacgag
     1201 tgccgcatag ccgaccacgg ccgaaacgag gaaatcggcc caatagatgc gcggattggc
     1261 agcgctcagc tcgcgcgtca gctccgccgc agcccgcagc agcacggcgt cgtcgcccgc
     1321 gcggggggct gtccgcggcg tctcggcggc ggcaggcgcc gcatcgaagg tcagactcgt
     1381 gttcatcggt ggcgcctctg atcgaacata atggcggtag cgtggcaatc aaaggtcaat
     1441 gctgcgcatt gcccgcctcg actttgatcg acatggacgt ctaaaggtcg cctccatgtc
     1501 cgagctccag atcgtgcccg tcgccgacca ggcggggcgt cgcgcctttg tcgactacgc
     1561 cttcgcacat tatgcgcacg accccaattg ggtggcgccg ctgaaaggcg aggcgtcggg
     1621 gatgatcacg ccgggcaaga atgcctggtt cacccatgcc gaagcccagc tgttcctggc
     1681 gaagcggggc ggtaagaccg tgggccgcat ttccgcacac atcgaccggc tggcgctcga
     1741 ccagccgccc gaacagggtt tcggacccgg caccggcttt tggggctttc ttgacgccga
     1801 tgacgaagcg attgcgcgca cattgatcgc cgaggcggag gcgtggctga agggcagggg
     1861 catgacccgc gcgctggggc cgatcagttc gtcgatctgg gaagagcccg ggcttctgat
     1921 ccaggggcat gaccatccgc cgacagtgat gatgggccat caggacgcgc gctaccaagc
     1981 gtggatcgag ggcctcggct acaccaaggc caaggatctg ctcacttatg agctggacat
     2041 tcgcaaggag ctcccgccgc tcgtccagcg catcgtcacg gcgggcgaga agaatccgcg
     2101 gatcaacgtc cgcaaggtca acaaggcccg cttcgccgat gaagccgaga tcatcctcca
     2161 catcctgaac gatgcctggt ccgacaattg gggcttcgtc ccgctgaccg atccggaagt
     2221 ggcggaagtc ggcaccaagc tgaagccgat cgtattcgaa gacctgatct acatcgccga
     2281 agtggaaggc gagccggtcg cgttcatgat tacgctgccg gatctcaacg agccgctgaa
     2341 accgctcaac ggttcgctgc tgccgttcgg ctgggcgaaa ttgctgttgt ggctgcgccg
     2401 gccgaaggcg cgcacgatgc gcgtgccgct gatgggcgta gtgaagcggc tccaggcctc
     2461 gcgccttgcc agccaactcg ctttcatgat gatcgaatat tcgcgccgcg ccgcagtcgc
     2521 gcgctatggc tcctcgcgtg gcgagatcgg ctggatcctg gaggacaacc agggaatggt
     2581 cgcaattgcc gacacgatcg agagccgcgt gaacaaagtc tatcggatct atcagaagca
     2641 gctctgaact tgccgcgcgc cagtgccgat gctagcactg tgctgccgag cacctatgtt
     2701 ggttcggtgc aaatacgccg cgcgcagatt gcgccggtcc acaggttgat gttgcaatga
     2761 ggcatttctt ccgcgtcccg catcgttcgg ctgtcgccgg cggttgcgcc tcgcggaact
     2821 tcggtccggg cctttcaccc cggcatgccg ttgcgacaga agcgcttttt atcacctcaa
     2881 cgcaaatggc ttgggtgcgg tcaggggccg cgcctcagcc ctacatcaca gatcgcgcag
     2941 ccgcctgcag ctcctggagc cgcggctgtg cccggagaac aaaaaatgac aacacgcatg
     3001 ctgatcgacg cgcgccaccg ggaggaaacc cgcgtggccg tcgtcaaggg aacccgtatc
     3061 gaggagtttg acttcgagtc cgccgaacgg aagcagctaa aaggcaatat ctatctcgcc
     3121 aaggtaaccc gggtcgagcc gtcgctgcag gcggcctttg tcgactatgg cggcaaccgc
     3181 cacggcttcc tggccttttc cgaaatccat ccagactatt accagatccc gaaggaggat
     3241 cgcgaggcgc tgctccgcga agaggccgag cacgcggccg aagaggaagc actcgacgcg
     3301 caggacgatg ccgacgaaga gcagtcggcc ggccgtgacg ccgagcacgc agaagaaggc
     3361 gaagacgccc cacggcccga agccgtcagc ggcgaaggcc atggcggtgc cgacgacacg
     3421 gtcgaatcgc tacgcgagcg ccgcatgcgc ctgcgccgcc gctacaagat ccaggacgtg
     3481 atccgccgcc gccaggtgct gctggtccag gtcgtcaagg aagagcgcgg caacaagggt
     3541 gcggcgctca ccacctatct gtcgcttgcc ggccgctatt gcgtgctgat gccgaacacc
     3601 ccgcagggcg gcggtatttc gcgcaagatt tcgaacgccg ccgaccgcaa gcggctgaag
     3661 tcgatcatga cggagctgaa gctgccgcgc acgatgggct gcatcgtccg caccgccggc
     3721 ctgtcgcgca ccaagaccga gatcaagcgt gacttcgact atctcgcgcg gctttgggac
     3781 gagatccgcg accgcacgct ccgggcgtcg gcgcccgcat tgatctatgg cgacagcgac
     3841 ctgatcaagc g
//
LOCUS       DASQVK010000004         2650 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_126883,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000004 DASQVK010000000
VERSION     DASQVK010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2650)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2650
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126883"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..554)
                     /gene="fliI"
                     /locus_tag="VE567_00060"
     CDS             complement(<1..554)
                     /gene="fliI"
                     /locus_tag="VE567_00060"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161275.1"
                     /note="involved in type III protein export during
                     flagellum assembly; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellum-specific ATP synthase FliI"
                     /protein_id="HYZ47265.1"
                     /translation="MLKRFAEDYLARLALEFTPRPEVIGRLSSFDGLLMEAVGLTVPV
                     GTVCRIGDGPNAVEAEVIGFRATKTLMMNLGGPAPLLPDAPVRPIGQPGEAQVGSALL
                     GRVVDGAGNPIDGLGPIRGAKSWPLVGKPQNPLDRARVTQPLDVGVRAINGLLTIGQG
                     QRVGIMAGSGVGKSVLLGMIVRQV"
     gene            complement(556..1278)
                     /locus_tag="VE567_00065"
     CDS             complement(556..1278)
                     /locus_tag="VE567_00065"
                     /inference="COORDINATES: protein motif:HMM:NF014196.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FliH/SctL family protein"
                     /protein_id="HYZ47266.1"
                     /translation="MSDFVGALEARTIDFGTLGAAMSGLRGGFAEISPASADSADQPK
                     HFRPATPGARPTAGWDPFDPMGDKAKAGPDPKILETAIEAARAEGFGEGMATAERMAA
                     ERGEADAQALARIAASLELLSSFDRDALAGRLRETVMFLVSRLVGEAGVSAELLTRRV
                     EAAAALIADSAEAAVLKLNPEDLPLIEGHVPALVAPVADPAIERGGFRIETRVTAIED
                     GPSAWLVQLAAAMERAALPDPA"
     gene            complement(1271..2278)
                     /gene="fliG"
                     /locus_tag="VE567_00070"
     CDS             complement(1271..2278)
                     /gene="fliG"
                     /locus_tag="VE567_00070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009433 - bacterial-type flagellum basal
                     body, C ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HYZ47267.1"
                     /translation="MMQEPARTFTGVEKAAVLMMLVGDEEAAAILQKLEPDEVRMLGK
                     AMFAVADVAEPQVAEVLDEFVEKAKDKNTIGFDPRPQIETMMTKALGHDKAENVLARI
                     TPREEACAIPLLDWLDAGEIAALVRDEHPQIAAVLLVNLDPAVAAQVIEQLPDAMQPD
                     VLHRIATLGPISPDALDMLRDVLSRRAGSGQSAAVPLGGAKEAAAIMNNARKTTEQRV
                     MPKVAKISKETAKAIEEEMFVFDHLLALDEKSMGTLLRGIESDVLVLALKGVDEAARN
                     RFLGCMSARAADGIRDEIEARGPVKLSEVLEAQKTILGIARQMAKEGAIRLAGGDDDY
                     V"
     gene            complement(2275..>2650)
                     /locus_tag="VE567_00075"
     CDS             complement(2275..>2650)
                     /locus_tag="VE567_00075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HYZ47268.1"
                     /translation="SRNDQVTVISRKFAGAAEASKPAWYDAGWFPVMARNLTALIIAL
                     LVIFVGLKPLLKMFGKKRDAAAAAEGATTVSRPPVSVAALEQAQGYEDKVKLVRDFTR
                     DNPARAALAVRDMIRSEEKAGA"
BASE COUNT          385 a          939 c          881 g          445 t
ORIGIN      
        1 ttcacctggc gcacgatcat gcccagcagc accgatttgc cgacgcctga gccggccatg
       61 atgccgaccc gctggccctg gccgatcgtc agcaaaccgt tgatcgcgcg cacgccgaca
      121 tcgagcggct gcgtcacccg cgcgcggtcg agcgggtttt gcggcttacc gacgagcggc
      181 cagcttttgg cgccccggat gggcccgagc ccgtcgatcg ggttgccggc gccatcgacc
      241 acacggccga gcagcgccga gcccacttgc gcttcgcccg gctggccgat cggccgcacc
      301 ggcgcgtcgg gcagcaacgg cgcggggccg cccaaattca tcatcagggt cttggtggcg
      361 cgaaagccga tcacttcggc ctcgacggcg ttcggcccgt cgccgatccg gcacacagtg
      421 cccaccggca ccgtcagccc caccgcttcc atcagcagcc cgtcgaacga ggaaagccgc
      481 ccgatcactt ccggccgagg cgtgaactca agcgcgagcc gcgcgagata gtcttcggcg
      541 aagcgcttca gcatgtcagg ccgggtccgg cagtgccgcc cgttccatcg cggcggcgag
      601 ctggacgagc caggcgcttg ggccgtcttc gatcgcggtg acgcgggttt cgatgcggaa
      661 gccgccacgc tcgatcgccg gatcggcgac cggcgctacg agcgcgggaa catggccttc
      721 gatcaacggc aggtcttcgg gattgagctt cagcaccgcg gcttcggcgc tgtcggcgat
      781 cagcgccgca gccgcttcga cacggcgcgt gagcagctcg gccgacacgc ccgcttcgcc
      841 gacaagccgc gagacgagaa acatcaccgt ctcacgcagg cgcccggcga gcgcatcgcg
      901 atcgaagctg ctgagcagct ccaggctggc ggcgatgcgc gccagcgcct gcgcatcggc
      961 ttcgccgcgc tcggccgcca tccgctcggc ggtggccatg ccttcgccaa agccttccgc
     1021 gcgcgcggct tcgattgcgg tttccaggat tttgggatcg gggccggcct tggccttgtc
     1081 gcccatcggg tcgaagggat cccagccggc agtcggccgg gcgcccggcg tagcgggccg
     1141 gaaatgcttg ggctggtccg ccgaatcggc cgatgcgggc gaaatttcgg cgaagccgcc
     1201 gcgcaggccg gacatggccg cgcccagcgt gccgaagtcg atggtgcgcg cctcgagggc
     1261 gccgacgaaa tcagacatag tcgtcgtcgc cgccggcgag gcggatcgcc ccttccttcg
     1321 ccatctggcg cgcgatgccg aggatcgtct tctgcgcctc cagcacttcg gagagcttga
     1381 ccgggccccg cgcttcgatc tcgtcgcgga tgccgtctgc ggcgcgcgcg gacatgcagc
     1441 cgaggaagcg gttccgcgcc gcttcgtcga cgcccttgag cgccagcacc agcacgtcgg
     1501 attcgatccc gcgcagcagc gtgcccatgc tcttttcgtc gagggcgagc agatggtcga
     1561 agacgaacat ctcctcctcg atcgccttgg ccgtttcctt gctgatcttg gcgaccttgg
     1621 gcatcacccg ctgctcggtg gtcttgcggg cgttgttcat gatcgctgcc gcttccttgg
     1681 cgccgccgag cggcaccgcg gcagactgtc cgctgccggc gcgccgcgag agcacatcgc
     1741 gcagcatatc gagcgcgtcg ggcgagatcg ggccgagcgt ggcgatccgg tggagcacgt
     1801 ccggctgcat cgcgtcaggc agctgttcga tcacttgcgc cgcgaccgca gggtcgagat
     1861 tgaccagcag cacggccgcg atctggggat gttcgtccct gaccagcgcc gcgatctcgc
     1921 cggcatcgag ccaatcgagc agcgggatcg cgcaggcttc ctcgcgcggg gtgatgcgcg
     1981 ccagcacatt ctccgccttg tcgtggccga gcgccttggt catcatcgtt tcgatctgcg
     2041 ggcgcggatc gaagccgatc gtgttcttgt ccttcgcctt ctcgacgaac tcgtcgagca
     2101 cctcggcgac ctgcggctcg gcgacgtcgg cgacggcgaa catcgccttg ccgagcatcc
     2161 gcacttcgtc gggctcgagc ttctgaagaa tggcggcggc ttcctcgtcg ccgaccagca
     2221 tcatcagcac cgccgccttt tcgaccccgg tgaaagtccg ggccggttcc tgcatcatgc
     2281 gccggccttc tcttcggaac ggatcatgtc gcgcacggcc agcgccgcgc gcgccggatt
     2341 gtcgcgtgtg aaatcgcgca ccagcttcac cttgtcctca tagccctgcg cctgttcgag
     2401 cgccgcgacg ctgaccggtg gacgggagac ggtcgtcgcg ccttccgccg cggcggccgc
     2461 gtcacgcttt ttgccgaaca tcttcagcag cggcttcagg ccgacgaaaa tcaccaggag
     2521 ggcgatgatc agcgcggtca ggttgcgggc catcaccggg aaccagcccg catcgtacca
     2581 ggcgggcttg ctcgcttcgg ccgcgccggc gaatttgcgc gaaatgaccg ttacctggtc
     2641 gttgcgcgaa
//
LOCUS       DASQVK010000005         3591 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_221772,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000005 DASQVK010000000
VERSION     DASQVK010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3591)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3591
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221772"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..484
                     /locus_tag="VE567_00080"
     CDS             <1..484
                     /locus_tag="VE567_00080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HYZ47269.1"
                     /translation="LIAAYFAPSPALLRRLDKIGQRGDARVITAAKSDNTTTIAAARF
                     TYPGLLRKGVRIFEYQPTKLHTKLFVIDDAVHIGSANFDMRSLFLNMELMLRIQDRAF
                     AERARTLFEHELKDCAEIKLADLNSWGSGVARARNALAYFLVSVVDYGVSRRLNLPLD
                     "
     gene            complement(495..1109)
                     /locus_tag="VE567_00085"
     CDS             complement(495..1109)
                     /locus_tag="VE567_00085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYZ47270.1"
                     /translation="MPVSSVDREARTISYRRPSHPLALFFKGFLKHPSMVGSIIPSSR
                     ALVNEMLAPVAWERVKLFVEYGPGVGTFTVPVLDRLGPDATLIAIDTNPDFVRFLRRE
                     IADPRLRVVRGSAADVRRIIADLGHDQAEYVLSGLPFSTLPEEVGNRIAAETAAVLKP
                     EGAFLVYQLSRKVTQYLAPHFSEVERGFEWRNIPPMRLFWARKG"
     gene            1307..2521
                     /locus_tag="VE567_00090"
     CDS             1307..2521
                     /locus_tag="VE567_00090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYZ47271.1"
                     /translation="MLTIAAGNTALQSVLPAIGRSLRVPDNAVAAAFSVSALVWVIAA
                     PYWARRSDRQGRRQMVLLGLFGFCSSVFLCGVFLAAGILGWLAPLPAFGCFIVARMLY
                     GTFGSAAPPSAQAIVAAGTSRAERTRALTLLASAFGLGTILGPALAPAFVLPVLGLAG
                     PAFVFSAFGIGVLLIAARRLPPDAPGRAHGAATSYPSIGGEPTGASVRAATADDRGKP
                     LPLTDPRIWPWMLVGLVAGHAQAMTGQAIGFLVIDRLHLSAAQAAAETGMVLMTGAGA
                     ALLAQWGLIPNLKLAPRQLALAGAALAALGCALTGFAQSLYLLQVAYGLASLGFGFLR
                     PAYTAGASLAVGQREQGAVAGRTTSVNGAVFVLGPSIGVGLYQFWSALPYLTAAAALI
                     LLMPYVWTRLSR"
     gene            2641..>3591
                     /locus_tag="VE567_00095"
     CDS             2641..>3591
                     /locus_tag="VE567_00095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47272.1"
                     /translation="MDKSPAAAKQGKTHQDELIADAETAWVKPPVDEAAAVSHGAVTV
                     GGQRIAYTATAGTLTIRDNDGKPTASVFYTAYTRDGAPNGSRPVTFFYNGGPGSATVW
                     LHMGSFAPVRVTTANPEYIRPAPYGFGPNSQSLIDKTDLVFVDAIGAGWSRPLGAKTG
                     KDFWGVDQDADAFARAVERYVTKNGRWSSPKFLFGESYGTLRNGAVAALLEERGLSLN
                     GIVYLSSILNYGVRQPGYDQNYMVLLPSYAATAWYHNRLQNRPADRQPLVAHQLGLKM
                     TEIDAEIGAHDIIGADPDIARHLLRDRALLFGADRRSLGKR"
BASE COUNT          552 a         1209 c         1187 g          643 t
ORIGIN      
        1 gctgatcgcc gcctatttcg cgcccagccc tgccttgctg cgccgcctcg acaagatcgg
       61 acagcgcggg gacgcgcgcg tgatcactgc cgccaagtcg gacaatacga cgaccatcgc
      121 cgccgcgcgc ttcacttatc ccgggctctt gcgaaaaggc gtgcgcatct tcgagtacca
      181 gccgacgaag ctccacacca agctgttcgt catcgacgac gccgtgcata tcggctccgc
      241 caatttcgac atgcgcagcc tgttcctcaa catggagctg atgcttcgga tccaggaccg
      301 ggcctttgcc gagcgggcgc gcacgctttt cgagcacgag ctgaaggact gtgccgagat
      361 caaactggca gacctgaact cctggggaag cggcgtcgcc cgcgcgcgca atgcgctcgc
      421 ctatttcctg gtgtcggtgg tcgattacgg cgtttcgcgc cggctcaacc tgccgctcga
      481 ctgagcggga gcgttcagcc cttgcgcgcc cagaacagcc gcatcggcgg gatgttccgc
      541 cattcgaagc cgcgctcgac ctccgaaaaa tgcggcgcca gatactgggt gaccttgcgc
      601 gagagctgat agaccaggaa cgcgccctcg ggcttcagca cggccgcggt ctcggcggcg
      661 atgcgattgc cgacctcctc cggcaaagtc gaaaacggca ggccggagag cacatattcg
      721 gcctggtcat gacccagatc ggcgatgatc cgccgaacat cggctgccga accgcgtacg
      781 acgcgtaacc gcggatcggc gatttcgcgg cgcaggaagc ggacgaaatc ggggttggtg
      841 tcgatcgcga tgagcgtggc atcggggccg agccgatcca gcaccggaac ggtgaaggtg
      901 ccgacgccgg ggccatattc gacgaacagc ttcacgcgct cccatgcgac cggcgccagc
      961 atctcgttca ccagcgcgcg cgaggagggg atgatcgacc cgaccatcga cgggtgcttc
     1021 agaaaaccct tgaagaagag ggcgagcgga tggctcggcc ggcggtagga aatggtccgg
     1081 gcctcgcggt ccaccgaaga tactggcatt cattacctcg cttgtcgcgg cggcgccgtc
     1141 gcaaatctgc aacagacttg caaccgccgc ttccggcccc gcgctctctg ctctatcggc
     1201 gttcccgatg gcggaagatc gcacgagcct gtcgcgcaag ggcgcggaaa caacgccgca
     1261 ggccaggctt ggtgccccgc caccgttcaa gctcttgttc ctggtgatgc tgacgatcgc
     1321 ggcggggaac acggcgctgc aatcggtgct gccggcgatc ggccgatcgc tgcgggtacc
     1381 cgacaatgcc gtggccgccg ctttttcggt gtcggccttg gtctgggtga tcgcggctcc
     1441 ctattgggcg cggcgatcgg accggcaggg gcggcggcag atggtcctgc ttggcctgtt
     1501 cggcttctgc tcgtcggtgt ttctgtgcgg cgttttcctc gcggccggca tcctgggctg
     1561 gctggcgccg cttcctgcct ttggctgctt catcgtcgca cgtatgctct acgggacctt
     1621 cggctcggct gccccgccct ctgctcaggc catcgtcgcg gccgggacgt cccgagccga
     1681 gcgcacgcgc gcgctgactt tgctcgcttc cgctttcggg ctgggcacga tcctcggccc
     1741 ggcgctcgcg cctgccttcg tgctgccggt gctggggctc gccgggccgg cctttgtttt
     1801 ttcagctttc ggtataggcg tgctgctgat cgccgcccgc cgattgccgc cggacgcacc
     1861 gggccgtgcg catggcgccg cgaccagcta tccctcgatc gggggcgagc cgaccggcgc
     1921 aagcgtgcgg gctgcgaccg cggacgatcg cggcaaaccg ctgccgctca cggatcccag
     1981 gatttggccc tggatgctgg tcggccttgt cgccggccat gcccaggcaa tgacggggca
     2041 ggcgatcggc tttctcgtca tcgaccggct gcacctttcc gccgcccagg ccgcggccga
     2101 gaccggcatg gtgttgatga cgggcgcggg cgccgcgctg ctcgcgcaat ggggcctcat
     2161 ccccaatctg aagcttgcgc cgcgccagct cgcgctggcc ggcgcggcac tggcggcgct
     2221 cggctgcgcg ctgaccggct ttgcccagtc gctttatttg cttcaggtgg cttacgggct
     2281 ggcatcgttg ggcttcggct ttttgcggcc cgcctacacc gccggcgcgt ccctcgctgt
     2341 cgggcagcgc gagcaagggg cggtcgcggg gcgcacgacc tcggtcaatg gcgcggtgtt
     2401 cgtgctcggc ccctcgatcg gggtgggcct ttatcaattc tggagcgccc tgccctatct
     2461 gacggcagcg gcggccctga ttctcctgat gccctatgtc tggacgcggc tatcccgttg
     2521 aggcaccaac gcgcccgggt ggttgaatcg gtcagaaggg caataggaat gcgcatgaca
     2581 atcgggttcg tggtggcgtc gctgctcgcc agcgccgccg cgaacggcca ggaccacccc
     2641 atggacaaat cgccggcggc ggcgaagcaa ggcaagaccc atcaggatga gttgatcgcg
     2701 gacgccgaga ccgcctgggt caagccgccg gtcgatgaag ccgcggcggt gagccatggc
     2761 gccgtgacgg tcggcgggca gcgtatcgcc tatacggcga cggccggcac gctcacgatc
     2821 cgcgacaatg acggcaagcc gaccgcttcc gtcttctaca ccgcctatac gcgcgacggc
     2881 gctcccaacg gctcgcggcc ggtgacgttc ttctacaatg gcggcccggg atcggcgacg
     2941 gtatggctgc acatgggcag cttcgcgccc gtgcgcgtca cgaccgcaaa ccccgaatat
     3001 atccgtcccg cgccctatgg cttcggcccg aattcgcaat cgctgatcga caagaccgac
     3061 ctggtcttcg tcgatgcgat cggcgccggc tggtcgcgcc cgctcggcgc caagacgggc
     3121 aaggactttt ggggcgtgga ccaggatgcc gatgcgttcg cacgagcggt ggagcggtac
     3181 gtcaccaaga acggccgctg gtcctcgcca aaattcctgt tcggcgagag ctatggcacg
     3241 ctgcgcaacg gggcggtcgc tgccttgctc gaggagcgcg ggctcagcct caacggcatc
     3301 gtctatctgt cgtcgatcct gaactacggc gtgcgccagc ccggctacga ccagaattac
     3361 atggtgctgc tgccgagcta tgccgccacc gcctggtatc ataaccgcct gcagaaccgg
     3421 ccggccgacc gccagccgct ggtcgcgcat cagctcggtc tgaaaatgac cgagatcgat
     3481 gcggagattg gcgcgcatga tataatcggg gctgatcccg atatagcgcg acatctgctc
     3541 cgcgatcgcg cgcttctctt cggggctgat cgtcgatccc ttggcaagcg c
//
LOCUS       DASQVK010000006         2978 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_158552,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000006 DASQVK010000000
VERSION     DASQVK010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2978)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2978)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2978
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158552"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..557)
                     /locus_tag="VE567_00100"
     CDS             complement(<1..557)
                     /locus_tag="VE567_00100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkene reductase"
                     /protein_id="HYZ47273.1"
                     /translation="MTSLFDPIQLGAVSAPNRVLMAPLTRGRSSREHVPGELMPRYYA
                     DRATAGLIISEATGISREGLGWPYAPGIWSDEQVEAWKPVTQAVHQAGGRIFVQLWHM
                     GRIVHPSFLGGEKPVSSSATTAPAYAHTYAGKQPYVEARALEIHEIPRLIDDYRRATR
                     NAKAAGFDGVQIHAANGYLIDQFLR"
     gene            606..1526
                     /locus_tag="VE567_00105"
     CDS             606..1526
                     /locus_tag="VE567_00105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HYZ47274.1"
                     /translation="MHRPDRPRKSTDRGSSIAFLALLGGNVALAFGPLFVRLASTQSH
                     VGPIAAAFWRLALAAPVLLVLTRATRQPIGRVRGAMLAAIALGGFFFAADLASWHLGI
                     LKTKLANATLLGNTASLIFPLYGFLAARAWPSRAQAIALLLAMLGGVLLMGRSYELSP
                     QNLLGDLLCLLAGVLYTFYLIAIDRARARLQAWPVLALATIAGIVPLYIFAKAMGETV
                     WPTSWGALIALALCSQLIGQGLLVYAMGHVRPLITGLAFLTQPVVAAATGWAVYGEAL
                     TPLDWAGAAMVAAAMVLVRRPAANAAPPAG"
     gene            complement(1533..2126)
                     /locus_tag="VE567_00110"
     CDS             complement(1533..2126)
                     /locus_tag="VE567_00110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017664616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urate hydroxylase PuuD"
                     /protein_id="HYZ47275.1"
                     /translation="MAKFFANLNAVLVAGVILLILVIVGFHANHAGTDTMGYLNGLFR
                     YLHVLFGIMWIGLLYYFNFVQIPTMPTVPAELKPGVSKYIAPTALFWFRWAAALTVLM
                     GLVIAGSPPNLYVVQALTFQPGFRLIGLGMWLGLIMAFNVWFVIWPNQKRALGLVAAD
                     DAVKARSATTAMMFSRINTMLSIPMLYCMVTQGVLGE"
     gene            2233..2895
                     /locus_tag="VE567_00115"
     CDS             2233..2895
                     /locus_tag="VE567_00115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004208860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="COQ9 family protein"
                     /protein_id="HYZ47276.1"
                     /translation="MTELPADPTLDEIRAYLAPLLPAQAAFDGWTPAAVSLAAAQAGV
                     DQDLALLAFKDGAVAMIDAWFKSVDHRMAAKLPVERLAGMKIRERITVLIWARIEILA
                     PDREALRRALSILAMPQNAFRAARMGWRATDLMWRLAGDTAADFNHYTKRVTLGAVYA
                     ATVLALLDDETADLSGTRAFLDRRIENVMQFERVKADLKGRAEHRPSLSRLIGRLRYP
                     AI"
BASE COUNT          473 a          979 c          992 g          534 t
ORIGIN      
        1 tcgcgcagga attggtcgat cagatagccg ttggccgcgt ggatctgcac gccgtcgaag
       61 ccggccgctt tcgcgttgcg agtcgcgcgc cggtaatcgt cgatcagccg cggaatctcg
      121 tggatttcga gcgcccgcgc ctcaacatag ggctgcttgc cggcataagt atgggcgtag
      181 gccggcgccg tggtcgccga ggacgagacc ggcttttcgc cgccgaggaa gctcgggtgc
      241 acgatccggc ccatatgcca gagctggacg aagatgcggc caccggcctg gtgcacggcc
      301 tgggtgaccg gtttccacgc ctccacctgc tcgtcgctcc agatgcccgg cgcatagggc
      361 cagcccagcc cttcgcggct gatgcccgtc gcttcggaaa tgatcagccc ggcagtcgcc
      421 cgatccgcat agtagcgcgg catcagctcg cccggcacat gctcgcggct cgaacggccg
      481 cgggtcagcg gcgccatcag cacgcggttg ggggcgctga cggcgccgag ctgtatcggg
      541 tcgaaaaggc tcgtcatatt gtcggtctcc ttttgcaacg gccagatagg gcgctacggg
      601 gcggcatgca tcggcccgat cgtccaagaa aatctactga tcgtggaagc agcatcgcat
      661 ttctcgcgtt gctgggcggc aatgtcgcgc tcgccttcgg gccgttgttc gtgcggctgg
      721 cgagcacgca gtcgcatgtc gggccgatcg ccgccgcgtt ctggcgtctc gcgctcgccg
      781 caccggtgct gctcgttctt acaagggcga cgcgccagcc aatcggccgc gtgcgcggcg
      841 cgatgctcgc ggcgatcgcg cttggcggct tcttcttcgc agcggacctg gcgagctggc
      901 atttgggcat tctcaagacc aagctcgcca acgcgacgtt gctcggcaat acggcgagcc
      961 tgatctttcc gctctacggc tttctggcgg cgcgggcctg gccgtcgcgc gcgcaggcga
     1021 ttgcgctgct gctcgcgatg ctgggcggcg tgttgctgat gggccggtcc tacgaattgt
     1081 cgccgcagaa tctgctcggc gacctgctct gcctgctcgc gggcgtcctc tacactttct
     1141 acctgatcgc gatcgatcgg gcgcgggcgc ggctccaggc ctggccggtg ctcgccctgg
     1201 cgaccatcgc cggaatcgtg ccgctctaca tcttcgccaa ggcgatgggc gagacggtgt
     1261 ggccgacgag ctggggtgcg ctgattgcgc tggccctgtg cagccagctg atcggccagg
     1321 gcctgcttgt ctatgcgatg ggccatgtcc gcccgctgat cacgggcctg gcgttcctca
     1381 cccagcccgt ggtggccgcc gcgaccggct gggcggtcta tggcgaagca ctgacgccgc
     1441 tcgactgggc cggcgcggcc atggtggcgg ccgcgatggt gctggtgcga aggccggcgg
     1501 cgaacgcggc gccgccggcc ggttgaggac gcttattcgc cgagcacgcc ttgcgtcacc
     1561 atgcagtaga gcatggggat cgaaagcatc gtgtttatgc gcgagaacat catcgccgtg
     1621 gtcgcggatc gcgccttcac ggcgtcgtcc gccgccacca ggcccagcgc gcgcttctgg
     1681 ttcggccaga tcacgaacca tacgttgaag gccatgatca ggcccagcca catgccgagg
     1741 ccgatcagcc ggaatcccgg ctggaaggtc agcgcctgga cgacatagag gttgggcggg
     1801 ctgcccgcga tcacgaggcc catcagcacc gtcagcgccg ccgcccagcg gaaccagaac
     1861 agcgccgtcg gcgcgatgta cttgctgacg cccggcttca actccgccgg cacggtcggc
     1921 atggtcggaa tctgcacgaa gttgaagtaa tagagcaggc cgatccacat gatgccgaac
     1981 agcacgtgca ggtaacggaa cagtccgttc agatacccca ttgtgtcggt gccggcgtgg
     2041 ttggcatgga aaccgacgat caccaggatg agcaggatga caccggcgac cagcacggca
     2101 ttcagatttg cgaagaactt ggccatgacg atcccctctt tatgtcgttg atggcgcgta
     2161 acggcttagc acttcgcaag aatcttgtca ccgggcttgg ccccgcccgc cgccgggaat
     2221 aaagagaagc gcatgaccga gctgcccgcc gaccctacgc tcgatgagat ccgcgcctat
     2281 ctggcgccgc tgcttcccgc ccaggccgcg ttcgacggct ggacgccggc agcggtatcg
     2341 cttgccgccg cccaggcggg cgtcgatcag gacctggcgc tcctcgcgtt caaggatggc
     2401 gcggtggcga tgatcgacgc ctggttcaaa tcggtcgatc atcgcatggc ggcgaagctg
     2461 ccggttgagc ggctcgcggg catgaagatc cgtgagcgga tcaccgtgct gatctgggcg
     2521 cggatcgaaa ttctcgcgcc cgaccgcgag gcgctgcgcc gtgccctctc gatcctggcc
     2581 atgccgcaaa atgcgttccg ggccgcgcgg atgggctggc gcgcgacgga cctgatgtgg
     2641 cgcctcgcgg gcgacaccgc ggccgacttc aatcactata cgaagcgcgt gaccttgggc
     2701 gcggtctatg cggcaacggt gctcgctttg ctcgacgacg agaccgccga tctgagcggc
     2761 acgcgcgcct tcctcgatcg gcgaatcgaa aatgtgatgc agttcgaacg ggtgaaggcc
     2821 gatctcaaag gccgtgccga gcaccgcccc agcctctccc gcctcatcgg ccggctccgc
     2881 tatccggcga tttagccact gtccgttatt gataatcaat cgcatcaagc ctattgaagg
     2941 cgcatgcggc tcgacgatct tccgctgcgc aaggcggc
//
LOCUS       DASQVK010000007         2222 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_127015,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000007 DASQVK010000000
VERSION     DASQVK010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2222
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127015"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            265..1440
                     /locus_tag="VE567_00120"
     CDS             265..1440
                     /locus_tag="VE567_00120"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYZ47277.1"
                     /translation="MAAACPARPSALHVITGLNVGGAETMLAKLIEQGVGPLEQRVLT
                     LLPPGAIGRRVRRAGADIVSLDLARGFPSPLIAARLMRLVRSADPDLIQGWMYHGNLA
                     ASFARLVRPGVPAVWNVRHSLASIDHEKPATRVLLRLSAAISRGADAIIYNSHAAARQ
                     HEAIGYSSARTTVIPNGFDCDRFRPRGDAKRLLGDRLGIDPSGLLVGMVARHHPMKDH
                     PSLVRAIARCREAGLDLHLLLVGDGFESARPELVNAIAALPPDRVTQLPARDDVADWL
                     PGLDILALSSAWGEGFPNILGEAMACGVPCVATDVGDSKRILGDAGLSTPASDSEALA
                     AAITILARLSPDERRQMGMRGRARICASYTLKDVASQYAALYDDLLAARIPRERSRP"
     gene            1437..>2222
                     /locus_tag="VE567_00125"
     CDS             1437..>2222
                     /locus_tag="VE567_00125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYZ47278.1"
                     /translation="MKIVVCASLAYSLVNFRGALLASLSRDHSVIACAPDDNPDVRRQ
                     LSEMGVGFRRIPMQRASLSPIADLRTLVTYLRLFREQNPDIVLAYTQKPIIYAGIATR
                     LRPRIRFFAMVSGLGHAFGERNGQPRRFLRALVSFLYRIAVRRTDTFFVFNRDDGVEM
                     LARRIIRPDHRLIQLPGSGVDTARFAKAPLPVGPPVFLLIARLMRDKGLYEFVAAARQ
                     VRMLVPAARFQLLGPFDDNPESIHGQELDAWIGEGVIEYLGTTS"
BASE COUNT          339 a          750 c          721 g          412 t
ORIGIN      
        1 ggggcagcgc cgtaatccgt ttgggataag cgcgttcttt cggcgacgcg gtcgggagca
       61 aatggtcgcg aggcggagcg ctttcggatt tagaagcggg cggaatcccc gcgccggaac
      121 cagaggcccc atgccttctc catttggatg atggccgaag tagccgttcg ccgcctcagc
      181 cccataacct aagtatcgcc catgcttggg gcgagagtgg aagactgtgt tacgacgcgt
      241 gcttgcgagg aaccgccgtt ccgcgtggcc gctgcctgcc cggcccggcc gagcgcgctc
      301 catgtcatta ccggtctcaa tgttggcggc gccgagacca tgctggccaa gctcatcgag
      361 cagggcgtcg ggccgctcga gcagcgcgtc ttgacgcttc tgccgccggg cgcaatcggg
      421 cggcgcgtcc ggcgcgccgg ggccgacatc gtcagcctgg atctcgccag gggcttcccc
      481 agccctctca tcgcggcgcg gttgatgcgg ctcgtgcgca gcgccgatcc ggacctcatc
      541 cagggctgga tgtaccatgg caatctggcg gcgagcttcg cgcggctggt gcgccccggc
      601 gttccggctg tctggaacgt ccggcattcg ctggcatcga tcgatcacga aaaacccgcg
      661 acccgggtcc tgctgcgcct gagcgctgcc atctcccgcg gcgctgacgc catcatctat
      721 aattcgcacg cagcagcgcg ccagcacgag gcgatcggtt actcgagtgc gcgcacgacc
      781 gtcatcccga acggcttcga ttgcgaccgc ttccgcccgc gcggcgatgc gaagcggctg
      841 ctcggggacc gcctcggcat cgatccgtcg ggtctcctcg tcggcatggt ggcgcgccac
      901 catccgatga aggaccatcc gagcctcgtg agagcgattg cacgatgcag ggaggccggg
      961 ttggacctgc acttgcttct tgtcggggac gggttcgagt cagcccggcc agagcttgtc
     1021 aacgcgatcg cggccctgcc gcccgatcgg gtgacgcagc tcccggcccg ggacgacgtg
     1081 gccgattggc tgccgggcct cgatattctt gcactgtcgt cggcctgggg cgaaggcttt
     1141 cccaacatcc ttggcgaggc gatggcctgt ggcgttccat gcgttgcgac cgatgtgggc
     1201 gacagcaagc gcattcttgg cgacgccggc ctcagcacgc cggccagcga cagcgaagcg
     1261 cttgccgcgg cgatcacgat tcttgcgagg ctgagcccgg acgagcgccg gcagatgggc
     1321 atgcgcggcc gggcgcggat ttgcgccagt tacacgctca aggacgtcgc gtcgcaatat
     1381 gcggcgctgt acgatgatct tctcgccgcg cgtatcccca gagagcgctc gcggccatga
     1441 agatcgtcgt ctgcgccagt cttgcctatt cgctggtcaa tttccgcggc gcgctgctgg
     1501 cttccctttc acgtgaccat agcgtgatcg cctgcgcgcc cgacgacaat ccggacgttc
     1561 gccgccagct ttccgagatg ggggtcggct tccgccggat cccgatgcag cgcgcttcct
     1621 tgagcccgat cgcggacctg cgtacgctgg tgacctatct aaggctgttc cgggaacaaa
     1681 atccggacat cgtcctcgcc tatacacaaa agccgatcat ctatgccggg atcgcgaccc
     1741 ggctcaggcc gcggatccgc ttcttcgcga tggtgagcgg gctcggccat gcgttcggcg
     1801 agcgaaacgg ccagccacgg cggtttcttc gcgcgctggt ctcgttcctc taccggatcg
     1861 ctgtacgccg taccgacacg ttcttcgttt tcaatcgcga cgatggcgtg gaaatgctgg
     1921 ctcgccggat catccggccc gatcaccggc tgatccagct ccccggctcg ggcgtcgaca
     1981 cggcccgctt cgccaaggcg ccgcttcctg tcgggcctcc ggtcttccta ctcatcgccc
     2041 gcctgatgcg ggacaaaggc ttgtacgaat tcgtcgccgc agcgcggcag gtgcgcatgc
     2101 tggtgccggc cgcacgtttc cagttgctcg ggcccttcga cgacaatccg gaaagcattc
     2161 acggccagga actcgacgcc tggatcggcg aaggcgtgat cgaatatctc ggcacaacca
     2221 gc
//
LOCUS       DASQVK010000008         2143 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_222020,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000008 DASQVK010000000
VERSION     DASQVK010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222020"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(110..445)
                     /locus_tag="VE567_00130"
     CDS             complement(110..445)
                     /locus_tag="VE567_00130"
                     /inference="COORDINATES: protein motif:HMM:TIGR04433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UrcA family protein"
                     /protein_id="HYZ47279.1"
                     /translation="MFTRTAAKALLASVAAGLVTFAAIPAHAEIGAPRSVLVRYSDLD
                     LTSETGKARLNKRIAFAAETVCGPADMLSYQSRMATAACQSDAIASANRGLVEVFAQA
                     GRPIRVSAR"
     gene            complement(671..1987)
                     /locus_tag="VE567_00135"
     CDS             complement(671..1987)
                     /locus_tag="VE567_00135"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HYZ47280.1"
                     /translation="MATTQIETEAGRRDAGLVREIGVWSFAAAIINVVVGGGIFAAPA
                     ALAGSVGPWAPFALLACGVAMGAIVLCCAEAGSRVPSSGGTYAYVEAAFGRAPGFIAG
                     MMLWLSCVLAAGGIAAAFADAIVALYPLGPARVQRVVLIIGVMALVTAINLRGAREGA
                     RFAGIATVVKLAPLLLFIGVGAFHVDPANLRPSGGIDPASFGQAIILSIFTFSGMETM
                     LSASGEVARPERTVPRALMLAMSGVLLLYIAIQLVAQGLLGPQLASAKEPLAQALGIV
                     HPGLVAVIAVGAAISRGAWLGSDVLGAPRILFAFARDGFLPEALGRVSPRTQVPSVAI
                     LTHAALGTALALAGEFTWLVLLSALATAPIYVGACLAAVKLRRADVRLVGPAFRVPGL
                     EIAAAVGVIAMVALVALASWPEIVGLFAAIGLSALLYLARGSVGTR"
BASE COUNT          367 a          738 c          768 g          270 t
ORIGIN      
        1 tgccgccaag gcgatgacgg gccgatagca agcaaaaagg ccccggcctc tttcgagacc
       61 ggggctcgtt gaacggtccg gcaaaggggc accggaccgg gaaaaaaact tacctggccg
      121 aaacgcggat cgggcggccg gcctgagcga acacttcgac aaggccgcga ttggcgctcg
      181 cgattgcatc cgactggcac gcggcggtcg ccatgcgcga ttgatagctg agcatgtctg
      241 ccgggccgca cacggtctcg gcggcaaagg cgatgcgctt gttcagccgg gccttgccgg
      301 tttcggacgt caggtcgaga tcgctgtagc ggacaagcac cgagcggggc gcaccgatct
      361 cggcatgagc cggaattgca gcgaaagtga cgaggccggc ggcgacagag gccaacaggg
      421 ccttggcagc ggtacgggta aacatggcgg gtccttcctt cgagtgcttc caggacggct
      481 ccgaaggggg cggagcctgc ttggcggcga gccggatggg gccggggagc tggtccgtcc
      541 cgccgcgcac tcttggatta cgccagggcc tgcgcccctg cagcttcgct tcgaccggcc
      601 aaggcgcggc ttctgcgaat gacgcgggca gcggacgaag cgctgctcag gctcgacgag
      661 cgtcgagcgg ctagcgcgtg ccgacggacc cgcgcgcgag gtagagcaag gcgctgagtc
      721 cgatcgcggc gaacaggccg acgatctccg gccagctcgc aagcgcgacg agcgccacca
      781 tggcgatcac gcccaccgcg gccgcgatct ccagcccggg cacgcggaaa gccggcccga
      841 ccagccgcac atcggcgcgg cgcagcttca cggccgcgag gcaggcgccg acgtaaatgg
      901 gcgcggtcgc cagcgccgaa agcagcacca gccaggtgaa ttcgcccgcc agcgccagcg
      961 cggtgccgag cgcggcgtgc gtcaggatcg ccaccgaggg cacctgggtg cgcgggctca
     1021 cgcgacctag cgcttcgggc aggaagccgt cgcgcgcgaa ggcgaacagg atgcgtggcg
     1081 cgccgagcac gtcgctgccg agccaggcgc cgcgcgagat cgccgcgccg accgcaatga
     1141 ccgcgaccag ccccggatgc acgatgccca gcgcctgggc gagcggttcc ttggcggagg
     1201 cgagctgcgg gcccaacaac ccctgcgcga ccagttggat cgcgatatag agcagcagca
     1261 cgccgctcat ggcgagcatg agcgcgcgtg gcacggtgcg ttcggggcgc gccacttcgc
     1321 cgctcgcgct cagcatcgtc tccatgcccg agaaagtgaa gatcgacagg atgatcgcct
     1381 ggccgaagga ggcggggtcg atgccgccgc tcggccgcag gttcgccgga tcgacatgga
     1441 aggcgccgac cccgatgaag agcagcaggg gcgccagctt caccaccgtc gcaatgccgg
     1501 caaagcgggc gccttcgcgt gcgccgcgca gattgatcgc ggtcacgaga gccatcacgc
     1561 ctatgatcag caccacgcgc tgcacgcgcg cgggaccgag cggatagagt gcgacgatcg
     1621 cgtcggcaaa ggcggcggcg atgccgcccg ctgccagcac gcagctcagc cacagcatca
     1681 tgccggcgat gaagccgggg gcccggccga acgcggcctc cacataggca taggtgccgc
     1741 cgctcgacgg cacccggctg cccgcttcgg cgcagcacag gacgatcgcg cccatcgcca
     1801 cgccgcaggc aagcagtgca aagggcgccc acgggccgac cgatccggcc agcgccgcag
     1861 gcgccgcgaa aatgccgccg ccgacgacca cgttgatgat cgcggcggcg aagctccaga
     1921 cgccgatttc gcggaccagc cccgcgtcgc ggcggcccgc ctcagtctcg atctgcgtcg
     1981 ttgccatgtg cgcccctttt cgccccagct tcggggcttt tcggggcaat ggcaagggcg
     2041 ggtccgggcc ggcttactgg ccggtcttga ccgtcgtcgt gaccttggtc ttgggcgtaa
     2101 cgtgcgtgcg ccgcacggtg tgcctgcgca ccggcgcctt gcg
//
LOCUS       DASQVK010000009         3647 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_222158,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000009 DASQVK010000000
VERSION     DASQVK010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3647
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222158"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            117..1448
                     /gene="trmFO"
                     /locus_tag="VE567_00140"
     CDS             117..1448
                     /gene="trmFO"
                     /locus_tag="VE567_00140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016745518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate--tRNA-(uracil(54)-
                     C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO"
                     /protein_id="HYZ47281.1"
                     /translation="MHDIHIIGGGLAGSEAAWQLAEAGFRVRLSEMRGVEGTPAHQTD
                     ALAELVCSNSFRSDDADNNAVGLLHAEMRALGSLIMREGDRHRVPAGSALAVDRDGFS
                     AGVTEALASHSNVQIVRERVDSLPGAGPTIVATGPLTAARLAKSIGAATGLDSLAFFD
                     AIAPIVHRDSIDMEIAWFQSRWDKGEGHDYINCPLDKDQYLAFVEGLISGEKTEFKEW
                     ERDTPYFEGCMPIEVMAARGPETLRHGPMKPFGLRDPRTGKRPYAVVQLRQDNALGTL
                     WNIVGFQTKLKHAEQVRLFRTIPGLERAEFARLGGLHRNTFIRSPELLDGRLRLKRAP
                     HIRFAGQITGCEGYVESAAIGLLAGRFAAAELAGIEIALPPPTTALGALLGHITGGAA
                     ADSYQPMNVNFGLFPPLETEAKKAERKLALVTRARRDLAAWLERQEEPVPA"
     gene            complement(1502..1969)
                     /locus_tag="VE567_00145"
     CDS             complement(1502..1969)
                     /locus_tag="VE567_00145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EF-hand domain-containing protein"
                     /protein_id="HYZ47282.1"
                     /translation="MWRFLAGVGSALLLCGAGLVWWTSGNQHAPVLSAVAAPLVQANE
                     ASAAPVLPPEAEERTREQKRFDRYDKDRNEQVSVEEYLASRRKAFAKLDTNGDGRLGF
                     EEWAKKTTDKFAKADADGSKTLSRQEFATTKVVRKTSLRSNCPPPAAKDEDEN"
     gene            complement(2012..2677)
                     /locus_tag="VE567_00150"
     CDS             complement(2012..2677)
                     /locus_tag="VE567_00150"
                     /inference="COORDINATES: protein motif:HMM:NF012705.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="squalene/phytoene synthase family protein"
                     /protein_id="HYZ47283.1"
                     /translation="MQVRTENSDEEQRLTDPERKLALVYAPRGHREMLSLVWQLDERL
                     GAIVARAQDPTLGQIRLTWWHDALQSLPGTRQVDPLLVAIADAPAIDPAALLPLVEGW
                     EVLLEPLPLAEEALHAYAEARGVTLFRVAAALLGGDPDRAAGAGRLWALADLAFRISD
                     RTTAERALMLAARQEVGALPRALAVLARLARRDVRRGLDKPRRQGSPARVARALLAGL
                     TGF"
     gene            2747..>3647
                     /locus_tag="VE567_00155"
     CDS             2747..>3647
                     /locus_tag="VE567_00155"
                     /inference="COORDINATES: protein motif:HMM:NF024792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein TadG-related protein"
                     /protein_id="HYZ47284.1"
                     /translation="MKFFKRKACSDRKRGFLQRLARNAAGNTAAIMGAALIPLLGFTG
                     AAVDTARLYVVKVRLQQACDAGALAGRKMMTGTSLDDAAKAQAQAFFKNNFRSGWFST
                     TNAQFTATDTNDGQVQGTASVSVPVTLMSIFGSGAETLTATCEARKEIGDVDVMFVLD
                     TTGSMSCAPSASATCVGSTQTYTRPDGTTGYYAQEQSGSKISALRQAVLDFYDALQSA
                     ADPTTHIRYGFVPYTSVVNIGKDLPSNLLSSNGGDYQTRRVISDSNVGSATSSTQTGV
                     SQTACNALAGRSPATPLTYSWDGS"
BASE COUNT          625 a         1267 c         1152 g          603 t
ORIGIN      
        1 gccgttcgtc atcgcactgc tggcgctggt gcgccgattg gccggctgag ggcaaccagt
       61 ctggccatgg gctcccaggc cttgccggtg ggcagggccg cccctagttg cccccaatgc
      121 acgacatcca catcatcggc ggcggcctcg ccgggtccga ggcggcctgg cagcttgccg
      181 aggccgggtt tcgcgtccgg ctgtccgaaa tgcgcggggt tgagggcacg cctgcgcatc
      241 agaccgacgc cctggccgag ctggtctgct cgaacagctt ccggtctgat gatgccgaca
      301 acaatgccgt cggcctgctc catgcggaga tgcgcgcgct cggctcgctg atcatgcggg
      361 aaggcgatcg gcaccgcgtg cctgcgggct ccgcgctcgc cgtggaccgg gacggatttt
      421 ccgctggcgt gacggaagcg cttgcgtcgc actccaatgt ccagatcgtg cgcgagcgcg
      481 tggacagcct gcccggcgcc ggcccaacga tcgtcgccac cgggccgctg accgccgcgc
      541 gtctcgccaa atccatcggc gcggcgaccg ggctcgacag cctcgccttc ttcgacgcca
      601 tcgcgccgat cgtgcaccgc gacagcatcg acatggaaat cgcctggttc cagtcccgct
      661 gggacaaggg cgagggccac gactatatca actgcccgct cgacaaggac cagtatctgg
      721 ccttcgtcga gggcctgatc tcgggcgaga agaccgagtt caaggaatgg gagcgtgaca
      781 cgccctattt cgaaggctgc atgccaattg aagtcatggc ggcgcgaggc ccggagacgc
      841 tgcgccacgg cccgatgaag ccgttcggcc tgcgagaccc ccgaaccggc aagcgaccct
      901 atgccgttgt tcagctgcgc caggacaatg cccttggaac gctctggaac attgtcggct
      961 tccagaccaa gttgaaacat gccgagcaag tgcggctgtt ccgcaccatt cccggcctcg
     1021 aacgcgccga gttcgcgcgg ctgggcgggc tgcaccgcaa caccttcatc cgctcgcccg
     1081 aactgctgga cgggcggctc cgcctcaagc gcgccccgca tatccgcttc gccggccaga
     1141 tcacggggtg cgaaggctat gtcgaaagcg cggcgattgg gctgctcgcc gggcgcttcg
     1201 ccgcggcgga gctggcgggg attgaaatag cgctgcctcc gcccacgacc gcgctcggcg
     1261 cgctgctcgg ccatatcacg ggcggcgcag cggcggacag ctaccagccg atgaacgtca
     1321 attttggcct gttcccgccg ttggagacgg aggcaaagaa agccgagcgc aagctggcgc
     1381 ttgttacgcg ggcgaggcgc gatttggcgg cttggctgga gcggcaagaa gagccggtgc
     1441 ctgcctgatc tgccctcgtt cccagcgacg gcgagaaacg acccggctcc cagctagcgc
     1501 ttcaattctc gtcctcatcc tttgccgcgg gtggcgggca atttgatcgg agcgaagtct
     1561 tccgcacgac ctttgtcgtc gcgaactcct ggcggctcag agtctttgag ccatcggcat
     1621 ccgccttggc gaatttatcg gtcgtcttct tcgcccattc ctcgaagccc aggcggccgt
     1681 ctccgttcgt gtcgagcttg gcaaaggcct tgcggcggct ggcgagatac tcttccaccg
     1741 agacctgctc gttgcgatcc ttgtcatagc gatcgaagcg cttctgctcg cgcgtgcgct
     1801 cttctgcttc gggcggcaga acgggtgccg cagacgcctc gttggcctgc actaacggtg
     1861 cggcaaccgc agagagcaca ggcgcatgtt ggttgccgct cgtccaccac accagtcctg
     1921 cgccgcacag cagcagcgcc gagccgacgc ctgcaagaaa ccgccacatg cctgaccccc
     1981 cccgtttttc ggcgccggac cttaagcgga gctagaaacc ggtcaacccg gcgagcagcg
     2041 cccgcgccac gcgcgcgggc gatccctgac ggcgcggctt gtcgagcccg cgccggacgt
     2101 cgcgccttgc gagcctggcc agcaccgcaa gcgcgcgcgg caatgcgcca acctcttggc
     2161 gggcagcgag catcagcgcg cgctcggcgg ttgtccggtc gctgatccga aaagcgagat
     2221 cggccagcgc ccagagcctg cccgcgcccg cggcgcggtc cggatcgccg cccaacagcg
     2281 ccgccgcgac ccggaaaaga gtgacgccgc gcgcctccgc ataggcatga agggcttcct
     2341 ccgcgagcgg cagcggctcg agtagcactt cccagccctc gactaacggc agcagcgccg
     2401 ccggatcgat cgccggcgca tcggcgatgg ccacaagcaa gggatcgacc tgccgcgttc
     2461 ccggcaacga ctgcagagca tcatgccacc aggtcaggcg gatttggccc agggttggat
     2521 cctgtgcccg agcaacgatc gcgccgagcc gctcatccag ttgccagacc aggctcaaca
     2581 tctcgcgatg gccgcgcggc gcataaacga gagcaagctt gcgctccggg tccgtcagcc
     2641 gctgctcctc gtccgaattt tcagtcctta cctgcactta accttccgca tttagaactc
     2701 cgcggggagt cagctgcata acgggacgag cttgccagag gtgcgcatga aattcttcaa
     2761 acgaaaagca tgctccgatc gcaagcgcgg attcctccag cggctcgcgc gcaacgcggc
     2821 cggcaatacg gccgcgatca tgggcgcggc cttgattccg cttctgggct ttaccggcgc
     2881 cgccgtcgac accgcacggc tttacgtggt caaggtacgc ctccagcagg cttgcgatgc
     2941 cggcgcgctc gccggccgca aaatgatgac cggcacctcg ctcgacgacg ccgcaaaggc
     3001 tcaggcgcag gccttcttca agaataattt ccgatcgggc tggttctcga ccaccaatgc
     3061 ccaattcacg gcgaccgaca ccaacgacgg gcaggtccag ggcaccgcat ccgtgagcgt
     3121 accggtcacg ctgatgagta ttttcggatc cggggccgaa acgcttaccg cgacctgcga
     3181 agcacgaaag gagatcggcg acgtcgatgt gatgttcgtt ctcgacacga ccgggtcgat
     3241 gtcctgcgcg ccgtcggctt cggcaacctg tgtcggctcc acccagacct acacgcggcc
     3301 ggacggcacc accggctatt atgcccagga gcagtccgga tcgaagattt cggcgctgcg
     3361 ccaggccgtg ctggactttt acgatgcgct ccagtccgcg gcagacccta cgacccacat
     3421 ccgctacggc ttcgtcccgt acacatcggt cgtgaacatc ggcaaggacc ttccgtccaa
     3481 cctgttgtcc agcaatggtg gcgactacca gacgcggcgc gtcatcagcg actcgaatgt
     3541 cggcagtgcg acgagcagca cgcagacggg cgtgagccag accgcgtgca acgccctggc
     3601 cgggcgttcg cccgcgactc cgctcaccta cagctgggac ggctcgc
//
LOCUS       DASQVK010000010         2768 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_158803,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000010 DASQVK010000000
VERSION     DASQVK010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2768)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2768)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2768
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158803"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..449)
                     /locus_tag="VE567_00160"
     CDS             complement(<1..449)
                     /locus_tag="VE567_00160"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HYZ47285.1"
                     /translation="MILSFLADAAGYLRFEQLGLSPVALDLGFFQIKWYSLGYIVGIF
                     VGWWYLLKLLAQPGAPMARRHADDLVFYVTLGIILGGRIGYVLFYKPEMFVHPADVLK
                     LWEGGMSFHGGLIGVVLALVYVARKHRLNWLRVCDYVACCAPPGIFLV"
     gene            516..2225
                     /locus_tag="VE567_00165"
     CDS             516..2225
                     /locus_tag="VE567_00165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017669556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate-forming enzyme family protein"
                     /protein_id="HYZ47286.1"
                     /translation="MPSELDTRFNAVMDQLTAADGPLALTMIEQDGVRLPMIASAPQS
                     LAHYFAHFSAQHGAAEFLVSSGERLTFAEVYEKARAVAGALIQGYGIQRGDHIGIAAR
                     NAPAWIVIYMGVLMAGGVATLLNGWWQAPELANALEMTDTRLLFADPPRTKRLAEARH
                     GAELVTIDVGLPISEALAPVLARGGGADTPLPELSGDDRATILFTSGSTGQAKGAIST
                     HRQVVQGTFNYLAQTLTMLQVLIQLGEGAPTLQPSTLLNVPLFHVTAEVPVLLQSFAM
                     GRKLVLMPKWDAEEAMRLIEKEKITYFVGVPLMSYEILVHPNRSRYDLSTVRDFAAGG
                     APRPVEHVKRLNEEMGGAKPLIGYGLTETNAVGCSNFRENYLAKPNSTGRASRPLVEL
                     AILDDAGRQVPQGERGEVCIRSVANFLEYYNNPEATRAAYTADRYFRTGDIGYLDEDG
                     YLFIVDRKKDIIIRGGENISTQEVEAALYEDPEVAEAAVFGLPDTRFGEVPGAVIHPA
                     PGVTLTPEAVREFLAPRIAAFKIPERIWISPDPLPRLGTEKIDKVTLRNRYRVLAAQS
                     EAA"
     gene            complement(2328..>2768)
                     /locus_tag="VE567_00170"
     CDS             complement(2328..>2768)
                     /locus_tag="VE567_00170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47287.1"
                     /translation="IKDPGNPAVDIESNVVTVEIDNVAPTLTLSFATLAGDCAHFGEG
                     TVFTGNFSVNDPHFGGFSFEILPPGPANGVLPAPASGASTRLGGTIPDPGISSAFTLN
                     TAGTDPCGYALVLHASDRTNVNSGQTNNTNKDSVGFCLGNPPEG"
BASE COUNT          528 a          866 c          894 g          480 t
ORIGIN      
        1 acgagaaaga tgccgggtgg cgcgcagcaa gcgacatagt cgcaaaccct gagccaattg
       61 agcctatgct tcctcgcgac ataaacgagc gcgagcacga ccccgatcag gccgccgtgg
      121 aaggacatgc cgccttccca cagcttcagc acgtcggccg ggtgcacgaa catctcgggc
      181 ttgtagaaca gcacatagcc gatccgcccg ccgaggatga tgccgagggt gacgtagaag
      241 accagatcgt cggcatgacg gcgggccatc ggcgcgccgg gctgggcgag aagcttcagc
      301 agataccacc agccgacgaa gatgccgacg atgtagccga gcgaatacca tttgatctgg
      361 aaaaaaccca agtcgagcgc gaccgggctc agcccgagct gctcgaagcg cagatagccg
      421 gcggcgtcgg cgagaaagga caggatcaag gcttttcccc agcgatttgc gcctgcatag
      481 tggccgccac gatagaaccc aagaggtgag aggcaatgcc gtcggagctc gatactcgct
      541 tcaatgcggt gatggatcag ctcaccgccg cggacgggcc gctggcgctg accatgatcg
      601 agcaggacgg cgtccggcta ccgatgatcg catcagcgcc tcaatcgctc gcgcattatt
      661 tcgcgcattt ttccgcgcag catggagccg cggaattcct ggtttccagc ggcgagcggc
      721 tgacctttgc cgaagtttac gaaaaggcgc gcgcggtggc gggtgcgttg atccagggct
      781 atgggattca acgcggcgac catatcggca tcgccgcgcg caacgccccg gcctggatcg
      841 tcatctacat gggcgtgctg atggcgggcg gcgtcgcgac gctgctcaat ggctggtggc
      901 aggcgcccga gctggcgaac gcgctcgaga tgaccgacac ccgcctgctc tttgccgatc
      961 cgccgcggac caagcggctg gcagaagcgc gccacggcgc ggagctcgtg accatcgatg
     1021 tggggctccc gatcagcgaa gcgcttgcgc cggtgctggc gcgcgggggt ggtgccgata
     1081 cgccgctgcc cgaactcagc ggtgacgatc gcgcgacgat cctctttacc tctggctcga
     1141 ccggccaggc aaagggcgcg atctcgaccc atcggcaggt tgtccagggc acgttcaatt
     1201 atctcgccca gacgctgacg atgctgcaag tgctgatcca gcttggcgag ggcgcaccga
     1261 cgctccagcc gtccacgctg ctcaacgtgc cgctgttcca cgtcaccgcc gaagtgccgg
     1321 tgctgctgca aagcttcgcc atgggccgca agctggtgct gatgcccaaa tgggatgccg
     1381 aagaggcgat gcggctgatc gaaaaggaaa agattaccta tttcgtgggc gtgccgctga
     1441 tgagctatga gattctcgtc caccccaacc ggtccagata cgatttgtcg acggtcaggg
     1501 actttgccgc gggcggcgcg ccgcgtccgg tcgagcatgt caagcggctc aacgaggaaa
     1561 tgggcggcgc aaagccgctg atcggttatg gactcaccga gaccaatgct gtcggctgta
     1621 gcaattttcg cgaaaattat ctcgcaaaac ccaacagcac tggccgcgcc tcccgcccgc
     1681 tggtcgagct tgccattctc gacgatgccg ggcggcaggt cccgcagggg gagcgcggag
     1741 aggtgtgcat ccgctcggtc gccaacttcc tggaatatta caataatccg gaagcaaccc
     1801 gcgccgccta cacggccgac cgctacttcc gcaccggcga catcggctat ctcgacgagg
     1861 acggctatct gttcatcgtc gatcgcaaga aggacatcat catccgcggc ggcgagaata
     1921 tcagcacgca ggaagtggaa gccgcgctct acgaggatcc agaggtcgcc gaggcagcgg
     1981 tgttcggcct tccggatact cgttttggcg aagtgccggg cgcagtcatc catcccgccc
     2041 cgggcgtgac gctgacgccg gaagccgtca gggaattcct cgcgccgcgc atcgccgcct
     2101 tcaaaattcc ggagcggatc tggatatcgc ccgacccgct gccccggctc ggcacggaga
     2161 agatcgacaa ggtgaccttg cgcaaccgat atcgcgtgct tgctgcccag agcgaggcgg
     2221 cctgagcata cggcgttctt ctctgaggcc tcgtcgaccg gcgacttagg gttgggtttt
     2281 tcgacatgtc tgccccggcc ggtcggccga ggcaggcacg ttatcgatca gccttcgggc
     2341 ggattgccca ggcagaagcc gaccgagtcc ttgttagtgt tgttcgtctg cccgctgttc
     2401 acgttggtgc ggtcggacgc gtggagcacc agggcatagc cgcatgggtc cgttcccgcc
     2461 gtgttcaacg tgaacgcgct gctgatcccc ggatccggga tggtaccgcc gagacgcgtc
     2521 gacgcgcctg aggcaggtgc cggaagaacg ccgtttgccg gaccgggcgg caggatctcg
     2581 aagctgaacc cgccgaaatg cgggtcgttg acgctgaaat tgccggtgaa cacggtacct
     2641 tccccgaagt gcgcgcagtc gcccgcgagc gtggcgaagc tcagcgtgag ggtcggcgcg
     2701 acattgtcga tctcgaccgt cacgacatta ctctcgatat cgacagccgg gtttcctggg
     2761 tccttgat
//
LOCUS       DASQVK010000011         3284 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_95688, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000011 DASQVK010000000
VERSION     DASQVK010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3284)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3284)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3284
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95688"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..532)
                     /locus_tag="VE567_00175"
     CDS             complement(<1..532)
                     /locus_tag="VE567_00175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010183518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase HerA-like domain-containing protein"
                     /protein_id="HYZ47288.1"
                     /translation="MSDDGVFIGLGGGKPQILNFRRANRHGLIAGATGTGKTVTLQGI
                     VEGFSKAGVPSFVADVKGDLAGLAMPGSPTAKTHAAFAARAAEIGMTDWAYADNPVQL
                     WDLFGEQGHPVRTTVSEMGPLLLARLMGLNEVQEGVLTIAFTVADKDGLLLLDLDDLQ
                     AMLAHCAERADELTTSY"
     gene            complement(598..2130)
                     /locus_tag="VE567_00180"
     CDS             complement(598..2130)
                     /locus_tag="VE567_00180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegQ family serine endoprotease"
                     /protein_id="HYZ47289.1"
                     /translation="MRYAYALTGALLLGGVASSLTMQQPLGAQTPQNAPTAMAAAAPR
                     GAPMSFADMVAKLQPAVVNISTTQRVQITQQNPFAGTPFADLFGGDSGTGRPVTRQAQ
                     SLGSGFIVSPDGYIVTNNHVVAPGREGAVVESITVTLPDRREFKARLVGRDLPSDLAV
                     LKIEAGRDLPFVRFGDSTHARVGDWVMAIGNPFGLGGTVTAGIISALHRNTGQGGAYD
                     RYIQTDASINMGNSGGPMFDLNGNVIGINTAIFSPSGGNVGIGFAIPAEQARPVVEAL
                     TRGGRVKRGYLGVQIQQIDAAIAESLGIDRNRGELIASVEPGQAADRAGIKQGDVVIS
                     VGGQPVTPDATLSYLISNTPVGAKVPVELIRNGHRMTVTATVGERPPEEQLAQRLGGA
                     DDDFSNDDQGKQGERDAAQASLGLAVQPLTPAIARQVGVPATTRGLVIGAVDPSSDAA
                     QQGLRRGDVILSVNGKPAVGATDVRTAVQEADKAGRNSVLLLVQRGNGPARYVGLRIK
                     NS"
     gene            complement(2228..3076)
                     /locus_tag="VE567_00185"
     CDS             complement(2228..3076)
                     /locus_tag="VE567_00185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HYZ47290.1"
                     /translation="MTAFSWRNPVLLAVAAIALLVLLASTIAVVPETRQAVIVRFGEP
                     ISIVNRYRAGESFGRSGAGLILRVPFVDQLVWLDKRVMDVSMERQQVLSTDQRRLNVD
                     AYARFRIVDPLRTYVTAGSEQQVADQLRPILGSALRNELGKVPAAALLSPERTRVMHE
                     IIFGLDRVARQYGAEIIDVRIKRTDLPEGSPLQSAFERMRSAREQEALTIDAQGRKQA
                     QIIRAEADAEAARTYAESFGKDADFYEFYRAMQSYRQTFGSASQTNVILSPDNAYLKE
                     FTGRGR"
     gene            complement(3073..>3284)
                     /locus_tag="VE567_00190"
     CDS             complement(3073..>3284)
                     /locus_tag="VE567_00190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013039493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="protease modulator HflK"
                     /protein_id="HYZ47291.1"
                     /translation="KAQGEAASFDKVYEQYKLAPDVTRKRMYYETMEDVLSKVDKTIV
                     EAPGVASYLPLDRLSRRAQTDEVQQ"
BASE COUNT          544 a         1102 c         1070 g          568 t
ORIGIN      
        1 catagctggt cgtcagctca tcggcgcgct cggcgcaatg agcgagcatc gcctggagat
       61 cgtcgaggtc gagcaacagc agcccatcct tgtcggcgac cgtgaaagcg attgtcagca
      121 cgccttcctg gacttcattg agccccatca gccgcgcgag cagcagcgga cccatttccg
      181 aaacggtcgt gcggaccggg tggccctgct caccgaacag atcccaaagc tggaccggat
      241 tgtcggcata ggcccagtcg gtcatgccga tctcggcagc cctggcggcg aaggctgcat
      301 gcgtcttcgc ggtcggcgac cccggcattg ccaggccggc gagatcgcct ttcacatcgg
      361 cgacaaagct cggcacgccg gccttggaaa aaccttcgac gatcccctgc agcgtcaccg
      421 tcttgccggt cccggtcgca ccggcgatca gcccgtgccg gttggcgcgc cggaaattga
      481 gaatctgggg cttgccgccg cccagcccga taaagacgcc gtcgtcgctc atcagggatg
      541 tgtagagccg ctgacggcgt cgaaacaacc ctccccgcac ggggagggtg ccccggttca
      601 gctattcttg atccgcaggc ctacataacg cgccggcccg ttgccgcgct gaacgagcag
      661 caatacgctg ttgcggccgg ccttgtccgc ttcctgcacc gccgtgcgca catccgtggc
      721 acccaccgcc ggcttgccgt tcaccgacag gatcacgtca cctctgcgca gtccctgctg
      781 ggcggcgtcg ctcgacggat cgacggcgcc gatcacgagt ccgcgcgtgg tcgccggcac
      841 gccgacctga cgcgcgatag cgggcgtcag tggctggacg gcgaggccga gcgaggcctg
      901 ggcggcatcg cgttcgccct gcttcccctg atcgtcgttg ctgaaatcgt catctgcgcc
      961 gccgagccgc tgcgcgagtt gctcctcggg cgggcgctcg ccgacagtcg cggtcacggt
     1021 catccggtga ccgttgcgga tcaactcgac cggcactttc gccccgaccg gcgtgttcga
     1081 gatcaggtag gacagagtcg cgtccggcgt caccggctgg ccgcccaccg aaatcacgac
     1141 atcgccctgc ttgatgccgg cgcggtcagc ggcctggccg ggttcgacgc tggcgatcag
     1201 ctcgccccgg ttgcggtcga tccccagcga ttcggcgatc gctgcgtcga tctgctggat
     1261 ctggacgccc agatagccgc gcttcacgcg gccgccccgc gtcaatgcct cgacgaccgg
     1321 ccgggcctgc tcggcgggga tggcaaagcc gatgccgaca ttgccgccgg acggcgagaa
     1381 gattgccgtg ttgatgccga tcacattgcc attgagatcg aacatcgggc cgcccgaatt
     1441 gcccatgttg atcgaggcgt cggtctggat gtagcggtca taggcgccgc cttggcccgt
     1501 attgcgatgg agcgccgaaa tgatgcccgc ggtcacggtg ccgccaaggc cgaacgggtt
     1561 gccgatcgcc atgacccagt cgccgacccg cgcatgggtc gaatcgccga agcgaacgaa
     1621 gggcaggtcc cgccccgctt cgatcttcag aacagcgaga tccgacggca agtcgcggcc
     1681 gaccagccgc gccttgaact cgcgccgatc gggcagcgta acggtgatcg actcgacaac
     1741 ggcgccttcg cgacccgggg ccaccacatg gttgttggtg acgatatagc cgtcgggcga
     1801 aacgatgaag ccggagccga gcgattgggc ctggcgcgtc accgggcggc cagtgccgct
     1861 gtcgccgccg aacaaatcgg caaagggcgt gccggcgaac gggttttgct gcgtgatctg
     1921 cacacgctga gtggtggata tattgacgac ggccggctgc aacttcgcca ccatatcggc
     1981 aaagctcatc ggcgcgccgc gcggcgcggc cgcggccatc gccgtcggtg cattttgagg
     2041 cgtctgggcg cccagcggct gctgcatggt cagcgagctg gcgacgcccc ccaacaggag
     2101 agccccggtc aaagcatagg cgtaacgcac gtgtgcatgt cctcttcagc tgtcagcgcc
     2161 ggcgcggacg cgcctcgcgc cgcgacggtt gcgcaaattt tcctgaacgg ggtttgaatg
     2221 acatctgtca tcgaccgcgt ccggtgaatt ccttcagata agcgttgtcc ggcgacagga
     2281 tgacattggt ctgagaggcc gatccgaagg tctgccggta cgactgcatc gcccggtaga
     2341 actcataaaa gtccgcgtct ttcccgaagc tctcggcata ggtgcgcgca gcctccgcat
     2401 cggcctcggc gcggatgatc tgcgcttgct tgcgtccctg cgcgtcgatg gtgagcgctt
     2461 cctgctcgcg cgcggagcgc atgcgttcga atgcggactg gagcggcgaa ccttccggca
     2521 agtcggtccg cttgatcctg acgtcgatga tctcggcgcc atattggcgc gcgacccggt
     2581 cgagcccgaa aatgatctcg tgcatcacgc gcgttcgctc cggcgaaagc agcgcagccg
     2641 ccggcacctt gccaagctcg ttccggagcg cggagccaag gatcgggcgc agctggtcgg
     2701 caacctgctg ctcgcttccc gcggtcacat aagtgcgtag cggatccacg atgcggaagc
     2761 gcgcataggc gtcgacgttg aggcggcgct gatccgtgga cagcacctgc tggcgttcca
     2821 tcgagacgtc catcactcgc ttgtcgagcc agacgagctg gtcgacgaac ggcacgcgca
     2881 ggatgagccc ggccccgctc cgcccgaagg attcgccggc gcggtagcgg ttgacgatgc
     2941 tgatcggctc gccgaagcgc acgatcacgg cctgccgggt ctccggcacc accgcgatcg
     3001 tgctggcaag cagcacgagc agcgcgatcg ctgccaccgc gagcaggacc gggttgcgcc
     3061 agctaaaggc tgtcactgct gcacctcgtc ggtctgggcg cggcgcgaaa gccggtcgag
     3121 cggcagatag gaggcgacgc ccggcgcctc gacgatcgtc ttgtccactt tcgagagcac
     3181 gtcttccatt gtctcgtaat acatgcgttt gcgcgttacg tccggcgcca gcttatattg
     3241 ttcataaacc ttgtcgaacg acgccgcctc gccctgcgct ttgg
//
LOCUS       DASQVK010000012         2376 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_411947,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000012 DASQVK010000000
VERSION     DASQVK010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2376)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2376)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2376
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411947"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1565
                     /locus_tag="VE567_00195"
     CDS             <1..1565
                     /locus_tag="VE567_00195"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYZ47292.1"
                     /translation="LWVLTIGVLVALMLDFALRTTRALMIERESARIDHDVSEYFFAR
                     AQAVRLEARTGGVGTMAAQLRGLEQVRALMSSGSLFLLADLPFALFFVLVIFALGGVL
                     ALVPILSLPIALGIAWGLARLIRKDTQRAQISANLKNGLLVESIDAAETIKANRGGWQ
                     LLARWNRLIEEIHASEDPVKRWTSTAGSIFSTLQQVAYVALIAFGAIEVVHGKMTTGA
                     LIACAIIAGRVNGPLVTQLPNLIVQWGYARASLRMLDHILQLPMDEDPDVQGLRPAQL
                     GGSLKLEGVRFAYPGAREGVDVPQLEIKEGERVAIVGGIGSGKTTLLRLMAGLYRPQA
                     GRVMLGNLDASQLAPDVLRQHIGYLAQDYRLVNGTLRENLLLGLSNPGDDAVMNAVQQ
                     SGLIQLVSGHPRGLDLPIAEGGRGLSGGQRTLVGLTRLLLAKPSVLLLDEPTANLDDQ
                     AEGLALGAVAGQLGPKSTLIVVTHKLRLLSLVGRVIVMMNGRVVLDGPTAEIVKALQG
                     PPRQPAKVEATA"
     gene            1565..>2376
                     /locus_tag="VE567_00200"
     CDS             1565..>2376
                     /locus_tag="VE567_00200"
                     /inference="COORDINATES: protein motif:HMM:NF024829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HYZ47293.1"
                     /translation="MRTRGSIIVIALAAATVLGFFLWAAWADLDQITRARGQVIPTGR
                     VQTVQAATEGTVNAITVKEGDRVAKGQLLVSLDQVSPAAAVEEGRARVASLKATMARI
                     EAELFNKPLVFPSEVSGFPEVANNQRMLLARRRQALNADIAALSAQLSLAQQEMNLNR
                     PLVASGDIARAEILRLQRAVSDLSGQIASRRSRYLEELQTEYAQTQEQLITAQQALTQ
                     RADQLANAELRAPASGVVSNLRISTVGAVLRPGDEVMQIIPAGARLIVEAHLS"
BASE COUNT          372 a          797 c          812 g          395 t
ORIGIN      
        1 ctctctgggt cctgacgatc ggcgtgctcg tggcgctgat gctcgatttc gcgctgcgga
       61 caacgcgggc gctgatgatc gagcgcgagt ccgcgcggat cgatcacgac gtgtccgaat
      121 atttcttcgc gcgcgctcag gcggtgcgac tggaggcccg caccggcggc gtgggcacca
      181 tggccgcgca gcttcgcggg ctcgagcagg tgcgcgcgct gatgtcgtcg gggtcgcttt
      241 tcctgctcgc cgacttgcct ttcgcgcttt tcttcgtgct cgtgattttc gcgcttggcg
      301 gcgtgctcgc tctcgtcccc atcctcagcc tgccgatcgc gctcggcatc gcctggggcc
      361 tggcgcggct gatccgcaaa gacacgcagc gcgcgcagat cagcgccaat ctgaagaacg
      421 gcctgctggt cgaatcgatc gacgcggccg agacgatcaa ggcaaatcgc ggcggctggc
      481 aattgctcgc gcgctggaac cggctgatcg aggaaatcca tgcctcggaa gacccggtca
      541 agcgctggac gtcgactgcc ggctcgatct tctcgacgct tcaacaggtg gcctatgtcg
      601 cgctgatcgc gttcggggcg atcgaagtcg tccacggcaa gatgacgacc ggcgccttga
      661 tcgcctgcgc gatcattgcc ggccgggtga acgggccgtt ggtcacgcag ctaccgaacc
      721 tgatcgtgca atggggctat gcgcgtgcgt cgctacgcat gctcgatcac atcctccagc
      781 tgccgatgga cgaggatccc gatgtgcagg ggctgcggcc cgcgcaactc ggcggctcgc
      841 tgaagctgga aggcgtgcgt ttcgcctatc ccggcgcgcg cgagggcgtg gacgtgcccc
      901 agctcgagat caaggaaggc gagcgcgtcg cgatcgtcgg cggaatcggc tcgggcaaga
      961 ccacgctgct gcggctgatg gcggggctct atcgccccca ggcagggcga gtgatgctcg
     1021 gcaatctcga cgcttcgcag ctcgccccag acgtgctgcg gcagcacatc ggctacctcg
     1081 cgcaggacta tcggctagtg aacggcacgc tgcgcgagaa tctgctgctc ggcctgtcca
     1141 atccgggcga cgacgcggtt atgaacgccg tccagcagag cgggctgatc cagctcgtga
     1201 gcgggcatcc ccgcgggctc gacctgccga tcgcggaagg cggccgcggc ctgtcgggag
     1261 gacagcggac tttggtcggc cttacgcgcc tgctgctcgc caagccgtcg gtgctgctgc
     1321 tcgacgagcc gacggccaat ctcgacgacc aggccgaggg cctggcgctg ggcgccgtcg
     1381 ccggccagct tggccccaaa agcacgctga tcgtcgtcac gcacaagctg cgcctgttgt
     1441 cgctggtcgg ccgagtgatc gtgatgatga acgggcgggt cgtgcttgac gggccgaccg
     1501 ccgaaatcgt caaggcgctg caaggcccgc cccgacaacc cgccaaagtg gaggcgaccg
     1561 cctgatgcgg acgcgtggtt cgatcatcgt cattgcactc gccgcggcga ccgtgctcgg
     1621 cttctttctc tgggcggcct gggccgacct ggaccagatc actcgcgccc gcggccaggt
     1681 gatcccgacc gggcgcgtcc agacggtgca ggcggcgacc gaaggcaccg tcaacgccat
     1741 cacggtcaag gaaggcgatc gtgtcgccaa gggccaattg ctcgtctcgc tggaccaggt
     1801 cagccccgcc gcggcggtgg aggagggcag ggcccgcgtc gcttcgctca aggccacaat
     1861 ggcgcggatc gaggcagagc tgttcaacaa gccgctcgtc ttcccatccg aggtctccgg
     1921 ttttcccgaa gtcgcgaaca accagcgcat gctgctcgcg cggcggcgcc aagcgctcaa
     1981 tgccgatatc gcggcgctga gcgcgcagct ttcgctggcg cagcaagaga tgaacctcaa
     2041 ccggccgttg gtcgcctcgg gcgatatcgc gcgggccgag attctacgcc tgcagcgcgc
     2101 ggtgtcggac ctgtcgggcc agattgcgag ccgccgcagc cgctatctgg aggagctgca
     2161 gaccgaatat gcgcagaccc aggaacagct catcactgcc cagcaggcgc tgacgcagcg
     2221 cgccgaccag ctcgccaatg ccgagctgcg cgcaccggcc tccggcgtgg tcagcaacct
     2281 gcgcatctcg acggtgggcg cggtgctgcg cccgggcgac gaagtgatgc agatcatccc
     2341 cgccggcgcg cggctgatcg tcgaggcgca tctgtc
//
LOCUS       DASQVK010000013         6152 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_127356,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000013 DASQVK010000000
VERSION     DASQVK010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6152
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127356"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..547
                     /locus_tag="VE567_00205"
     CDS             <1..547
                     /locus_tag="VE567_00205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidase M48"
                     /protein_id="HYZ47294.1"
                     /translation="DIWANLRNEMDATAAARKVRSRKDRRGMFETHPATAERLDYLRT
                     NAANDRGGFTGEAEYRAAISPLWPMLIDDQVKLNDFGGSEFLLAGLAGGGWTGPLLYA
                     RAELYRFRGRAGDFEKAAAFYREAIAQPEAPVAAWRGLGLALARAGDAAGSKAAIDEY
                     LKRNPQASDKAMLAMISGGSQ"
     gene            544..1131
                     /locus_tag="VE567_00210"
     CDS             544..1131
                     /locus_tag="VE567_00210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47295.1"
                     /translation="MNKLMLGLALVAFSAAPISARWTLMPETRVAVAKSGMTVLPGQG
                     WNSWSVKPGKKGELWSYDGPVLNQIEFIGGVASGEPLARERNKKDKPLPKFSAKMLPT
                     DIAQAYEQTQRIVAQSPDFTIESMEPVTFAGHPGVKFTYRFTKPDEELSRKGEARGAI
                     VGGKLYMIVYTAPALYYFDAHLPKAQAIMDSAKIN"
     gene            1203..3443
                     /gene="parC"
                     /locus_tag="VE567_00215"
     CDS             1203..3443
                     /gene="parC"
                     /locus_tag="VE567_00215"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009340 - DNA topoisomerase IV complex
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HYZ47296.1"
                     /translation="MTDLAELPEPIDAPFDSALSERYLVYALSTITARSLPDLRDGLK
                     PVHRRLLWAMRLLRLDPAAGYKKCARVVGDVIGKYHPHGDQSVYDAMVRLAQTFALRY
                     PLVDGQGNFGNIDGDNAAAYRYTEARLTQVAIDLMAGLDEGTVEFRPTYNGEEEEPEI
                     MPGLFPNLLANGASGIAVGMATSIPPHNAAELIDAATLLIDEPEAEASKLLEFVKGPD
                     FPTGGVIVDSAGAIAEAYATGRGAFRVRARWTREDTGRGTWVAVVTEIPYGVQKGKLI
                     EEIAALVNDKKLPILEDVRDESDAEVRIVLEPRSRTVDPDMLMDSLFRLTDLETRVPL
                     NLNVLDAHHTPRVLGLKAVLEQWLQHQFVVLVRRSEHRVARIDDRIELLDGYLVAYLN
                     LDRVIEIIRTEDEPKPVMMAEFSLTDRQAEAILNMRLRSLRRLEEMEIKGERAKLDEE
                     REGLRALLASPARQRTRMKRDLAKLRERYGPETALGARRTLIEEAGPAREYAREAMID
                     KEPITVVLSQRGWIRALKGHTDLASAETMKFKEGDGPSFAFHAQTTDKILIAAENGRF
                     FTLAGDKLPGGRGFGEPIGLMIDLDGQVGVAACFAAGTGRLLLASSDGRGFVAKVEDA
                     VAETRKGKQLVNLRPGAKLKIVRRVPDEADYVAVIGDNRKMVVFPLSELPEMGRGQGV
                     ALQRYRDGGLADAMALKFADGLNWSMGGGSGRTRTEADLSPWRSARGAAGRMAPLGFP
                     RDNRFG"
     gene            3599..5236
                     /locus_tag="VE567_00220"
     CDS             3599..5236
                     /locus_tag="VE567_00220"
                     /EC_number="2.7.7.65"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA];
                     GO_function: GO:0071111 - cyclic-guanylate-specific
                     phosphodiesterase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional diguanylate
                     cyclase/phosphodiesterase"
                     /protein_id="HYZ47297.1"
                     /translation="MRARRQFLDALPLAAALLVQLKGETRLIDGNREFQQLSERADAP
                     ILDDADVAGLLEGFFAGDGDIVDHSWIDGDPITGREYTIRLARIRLATSEAPACLMTL
                     LDRTAERGAEKSLRFEMFNDSLTGLPNRAGFSDRLETLLETAEPGWAAVLMVDLRRFS
                     RINESIGPVAADELLITVARRLLSVIRAGDVLARTGGNEFGVFVRVQDGPEEVMAVAD
                     RLNAVLTTPCRLSDLEIRIGCAIGGAVHETGCDADELIRRGHFALKQAKSSGRTELYQ
                     PRAFDIARQQFSMETSLRRAIEANRLTLAFQPVIELATSRVCGFEALARWRHHGREVG
                     PSEFIPVAEESGLILPLGRWALDAALATLKRWDKAAGATVPTRMAVNVSAIQLARDDV
                     PGLVKEALAAHGIEPERLALELTESSIVADPDGATRAMMAIRDIGATIALDDFGTGYS
                     NLGYLQRLPIDVLKIDQSFVTGMLGDRDKIAIVRAMLSLAASLGIKTTAEGVETQELA
                     QILAALGCTRGQGYFYAPPLEADAAFEFWSRTNSAAT"
     gene            complement(5167..>6152)
                     /locus_tag="VE567_00225"
     CDS             complement(5167..>6152)
                     /locus_tag="VE567_00225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HYZ47298.1"
                     /translation="VIGGKSVEATTLRRDVSTDGRHATVAFTDDWREDAARRDFTINA
                     LSADPASGEVFDYFGGIEDLRAGAVRFIGDPLQRIAEDHLRILRFFRFHARFGRGAPE
                     AAGYEACAARAKDLMALSRERIADELLKLLGCGDPAPAVGYMLARDILAPVLPEIREQ
                     GLERLRALIAAEQAAGLAGDPVRRLAALLPQDAQQADAIAIRLKLSNAIRKRLVLAVS
                     APLLPPQELAYRIGVEGAVDRLLLAGRAQEASALARWSPPRLPISGGALVSRGLNQGP
                     IVARALKMVEDRWVAEGFPASGRVEQIADQVAAELVRDQNSNAASASSGGA"
BASE COUNT         1065 a         2026 c         2064 g          997 t
ORIGIN      
        1 cgatatctgg gccaatctgc gcaacgagat ggatgcgacc gcggcggcgc ggaaggtacg
       61 cagccgcaag gataggcgcg gcatgttcga gactcacccg gccacggccg aacggctcga
      121 ttatctgcgg acgaacgccg ccaacgatcg cggcggcttc actggcgagg cagagtatcg
      181 cgctgcaatc tcgccactct ggccgatgct gattgacgac caggtaaagc tcaatgattt
      241 cggcgggagc gagttcttgt tggctgggct tgccggtggc ggctggactg ggccgctcct
      301 ctatgcccga gcggaactct accgctttcg cggccgggcc ggagatttcg aaaaggcagc
      361 tgctttctac cgggaggcga tcgcccaacc ggaggcgccg gtggccgctt ggcgcggact
      421 gggcctcgcg cttgcccgtg ccggcgacgc cgccggcagc aaggccgcga tcgacgagta
      481 tctgaaacgc aatccgcagg catcggacaa ggcgatgctc gccatgatca gtgggggatc
      541 acaatgaaca agcttatgct gggcctggcg ctcgtagcct tttccgcagc accgatcagc
      601 gcacgatgga cgctcatgcc ggaaactcgc gtcgccgtgg cgaagagcgg catgacggtg
      661 ctcccgggcc aaggctggaa ctcctggtcc gtgaagccgg gcaagaaggg cgagctttgg
      721 agctatgacg gcccggtgct caatcagatc gagttcatcg gcggtgtcgc gagtggcgag
      781 ccgctggccc gcgaacgcaa caagaaggac aagccgctcc ccaaattcag tgccaagatg
      841 ctgccgacgg atatcgcgca ggcgtatgaa cagacccagc gcatcgtagc ccagtcgccg
      901 gattttacga tcgagtcgat ggagcccgtg acgttcgcgg gccatcccgg cgtaaagttc
      961 acctatcgct tcaccaagcc ggacgaggaa ctcagccgca aaggcgaggc gcgcggcgcg
     1021 atcgtgggcg gcaagctcta catgatcgtc tatacggccc cagcgctcta ctatttcgac
     1081 gcgcatctgc ccaaggcgca ggcgatcatg gacagcgcca agatcaacta gccgcatcca
     1141 tccacagcaa aacgggcgca ttcgcttccc gcgagtgcgc tcttcttgct atctgagcgg
     1201 caatgaccga cctcgccgag cttccggagc cgatcgacgc cccgttcgac agcgcgcttt
     1261 ccgaacgcta tctcgtctat gcgctgtcca cgatcactgc gcgttccctg ccggatctgc
     1321 gcgatgggct gaagccggtg catcggcgcc tgctgtgggc gatgcggctg ctgcggctcg
     1381 atccggcggc ggggtacaag aagtgcgcgc gcgtcgtcgg cgacgtgatc ggcaaatacc
     1441 atccgcatgg cgaccagtcc gtctatgatg cgatggtccg cttggcgcag acctttgcgc
     1501 tgcgctatcc gctcgtcgac ggccagggca atttcggcaa tatcgacggc gataacgccg
     1561 ctgcctatcg ctacaccgag gcacggctga cccaggtcgc gatcgacctg atggccgggc
     1621 tcgacgaagg cacggtcgag ttccgcccca cctataacgg cgaggaagaa gagccggaga
     1681 tcatgccggg cctcttcccg aacctgctcg ccaatggcgc gagcgggatt gcggtgggca
     1741 tggcgacgtc tatcccgccg cacaatgccg ccgagctgat cgacgccgcg accctgctga
     1801 tcgacgagcc ggaagccgag gcgtccaagc tgctagagtt tgtgaaaggc cccgatttcc
     1861 cgaccggcgg cgtgatcgtc gattccgccg gcgccatcgc cgaggcttat gcgaccggcc
     1921 gcggcgcgtt ccgcgtccgt gcccgctgga cccgggagga tacgggccgc ggcacctggg
     1981 tcgcggtggt gaccgagatt ccctacggcg tgcagaaggg caagctgatc gaggagatcg
     2041 cggcactcgt caacgacaag aagctgccga tcctcgagga tgtgcgcgac gagtccgacg
     2101 cggaagtccg catcgtgctt gaaccgcgca gccgcacggt cgatccggac atgctgatgg
     2161 acagcctgtt ccggctgacc gacctcgaaa cgcgcgtgcc gctcaacctg aacgtgctgg
     2221 acgcgcacca cacgccgcgc gtgctgggcc tcaaggcagt gctggagcaa tggctgcagc
     2281 atcagttcgt tgtgctggtc cgccgctccg agcatcgggt ggcgcggatc gacgaccgga
     2341 tcgagctgct cgacggctat ctggtcgcct atctgaacct cgaccgcgtc atcgagatca
     2401 tccgcaccga ggacgagccc aagccggtga tgatggcgga gttctcgctc acagaccgac
     2461 aggccgaggc gatcctcaac atgcgcctgc ggtccttgcg ccggctcgag gaaatggaga
     2521 tcaagggcga gcgcgccaag ctcgacgagg agcgcgaggg gctgagggca ttgctcgcgt
     2581 cgcccgctcg ccagcggaca cggatgaagc gcgacctggc gaagcttcgc gagcggtacg
     2641 gccccgagac ggcgctcggc gcccgccgca ccctgatcga ggaagcaggc cccgcgcgcg
     2701 aatatgcgcg cgaggcgatg atcgacaagg agccgatcac tgtcgtgctg tcgcagcgcg
     2761 gctggatccg ggcgctcaaa ggccataccg acctcgcctc ggccgagacg atgaagttca
     2821 aggaaggcga cggcccctct ttcgctttcc atgcgcaaac gaccgacaag atcctgatcg
     2881 ctgcggaaaa cgggcgcttc ttcacgctcg ccggcgacaa gcttcccggc gggcgcggct
     2941 ttggcgagcc gatcgggctg atgatcgatt tggatggcca agtgggtgtc gcggcctgct
     3001 ttgcggcggg cacgggcagg ctgctgctcg cttcctccga cggccgcggc ttcgtcgcca
     3061 aggtggagga cgcggtcgcc gaaacgcgca agggcaagca gctcgtcaat cttcgcccgg
     3121 gcgccaagct gaaaatcgtg cgccgcgtgc ccgacgaggc ggattatgtc gcggtgatcg
     3181 gcgacaatcg gaagatggtg gtcttcccct tgtccgaact ccccgaaatg gggcggggcc
     3241 agggcgtggc gctccagcgc tatcgcgacg ggggcctcgc cgatgcgatg gcgctgaagt
     3301 tcgcggacgg actcaactgg tctatgggcg gcggcagcgg ccgcacgcgc acggaggcgg
     3361 acctctcgcc ctggcgcagc gcgcgcggcg cggcgggccg catggcgccg ctcggcttcc
     3421 cccgcgacaa tcgcttcggc tgattccgat agcgagggtt actggacgaa tggttaggat
     3481 gcattaaccg caccccgtta gagcgttgcg gatggccgcc ggcacgacga ccctgcgtaa
     3541 gatatcagtt ccctggctgg gagcagcaga cgacagttcg atatccgccg agctggccgt
     3601 gcgcgcgcgc cgccaattcc tcgatgcact gccgcttgct gcggcgttgc tcgtccagct
     3661 caagggcgaa acccggctca tcgacggcaa ccgcgagttc cagcagctca gcgagcgtgc
     3721 cgatgcccca atactcgacg atgccgacgt cgcgggtctg ctcgaggggt ttttcgccgg
     3781 tgacggcgat atcgtcgatc attcctggat cgacggcgat ccgatcaccg ggcgcgaata
     3841 cacgatccgg ctggcgcgga tccggctggc gaccagcgaa gcgccggctt gcctgatgac
     3901 tttgctggac cgcacggccg aacggggcgc cgaaaagagc ctgcggttcg aaatgttcaa
     3961 tgacagcctg accgggctgc ccaaccgtgc tggcttttcc gacaggctgg aaacccttct
     4021 cgaaacagcc gagccgggct gggcggccgt gctgatggtc gatctgcggc gcttcagccg
     4081 catcaacgaa tcgatcggcc ctgtcgcggc ggacgaattg ctgatcacgg tcgcgcggcg
     4141 gctgctctcg gtgatccgtg ctggagacgt tctcgcgcgc accggcggca atgagttcgg
     4201 ggtgttcgtc cgcgtgcagg acgggccgga agaagttatg gccgtggccg ataggctgaa
     4261 tgccgtgctg acgacaccct gtcgcttgtc ggacctcgaa atccggatcg gctgcgcgat
     4321 cggcggcgcg gtgcatgaaa ccggctgcga cgccgacgag ctgatccgcc gcggccattt
     4381 cgcgctgaag caagccaagt cgagcggccg cacggagctt tatcagcccc gcgctttcga
     4441 cattgcgcgc cagcaattct cgatggagac cagcctccgc cgcgccatcg aggcgaaccg
     4501 cctgacgctg gcattccagc cggtgatcga gctggcgacc agccgcgtgt gcggcttcga
     4561 agccttggcc cgctggcggc atcacggccg cgaagtgggc ccgtcggaat tcattccggt
     4621 tgccgaggaa tcggggctga tccttccgct tggccgctgg gcgttggacg cagcactggc
     4681 gacgctcaag cgctgggaca aggccgccgg cgccaccgtt cccacacgca tggccgtcaa
     4741 tgtttcggcg atccagcttg cacgggatga tgtaccgggg ctcgtcaagg aagcgctcgc
     4801 cgcacacggg atcgaacccg agcggctggc gctggaactt accgaaagct cgatcgtcgc
     4861 cgatccggac ggcgctaccc gcgcgatgat ggcgatccgg gatattggtg cgaccatcgc
     4921 actcgacgat ttcggcactg gctattccaa tctcggttat ctccagcgcc taccgatcga
     4981 tgtgctgaag atcgatcaga gcttcgtgac cggcatgctc ggcgaccgcg acaagatcgc
     5041 gatcgtccgc gcgatgcttt cgctcgccgc gtcgctcggc atcaagacca cggcggaagg
     5101 tgtcgagacg caggaactgg cccagatcct ggcggcgctg ggctgcacgc gcggccaggg
     5161 ctatttctac gcgccgccgc tcgaagccga tgcggcgttc gaattctggt cccggaccaa
     5221 ctccgccgcg acctgatcgg cgatctgctc gacgcgccct gacgcgggaa agccttctgc
     5281 cacccagcgg tcctcgacca tttttagcgc ccgcgccacg atcggaccct ggttcaaccc
     5341 acggctgacg agcgcgccgc cggatatcgg caggcgcggc ggcgaccagc gcgcgagtgc
     5401 cgaggcctcc tgcgcccgcc cggcgagcaa aagccggtcg accgcgcctt cgaccccgat
     5461 gcgataggcg agttcttgcg ggggcagcag cggcgccgat accgcgagca ccaggcgctt
     5521 gcggatcgcg ttcgagagct tgagccggat cgcgattgcg tccgcttgct gcgcgtcctg
     5581 cggcagcagc gccgccaggc gccgcaccgg gtcgccggcc aagcccgctg cttgctccgc
     5641 cgcgatcagc gcgcgcagcc gctccagtcc ttgctcgcgg atctcgggca gcaccggcgc
     5701 gagaatgtcg cgcgcgagca tatagccgac cgctggggcc ggatcgccgc agcctagcag
     5761 cttcagcagc tcgtccgcga tccgttcgcg gctcagcgcc atcaggtcct tggcgcgcgc
     5821 cgcgcaggct tcatagccgg cggcctcggg cgcgccgcga ccaaaacgcg cgtggaagcg
     5881 gaagaagcgc aggatgcgca aatggtcctc ggcgatgcgc tgcagcggat cgccgatgaa
     5941 gcggacggcg ccggcgcgca gatcctcgat accgccgaaa tagtcgaaca cctcgccgct
     6001 cgccggatcg gcggagagcg cgttgatcgt gaaatcgcgg cgcgcggcgt cctcgcgcca
     6061 atcgtcggtg aaagccaccg tagcgtggcg gccgtcggtc gacacgtcgc ggcgcagcgt
     6121 cgtcgcttcg accgacttgc cgccgatcac ca
//
LOCUS       DASQVK010000014        12633 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_159101,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000014 DASQVK010000000
VERSION     DASQVK010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 12633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12633
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159101"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..620
                     /gene="ligD"
                     /locus_tag="VE567_00230"
     CDS             <1..620
                     /gene="ligD"
                     /locus_tag="VE567_00230"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HYZ47299.1"
                     /translation="VEDYLYVDSPEGLLTCVQMGTIEVHGWGSRVPEIEKPDRMVFDL
                     DPDEGLGFEHVKKAALDLKRYLGDLGLVTFAMLSGGKGVHVVAPLTPRAEWPEVKDFT
                     HRFAQALEQSEPERFVANMSKAKRKGRIFVDYLRNQRGATAILPYAARARPHAPVAAP
                     VSWEELKDLDTAARYTVLDGDVLIERANSRSLKGWGVADQALPDF"
     gene            731..1636
                     /locus_tag="VE567_00235"
     CDS             731..1636
                     /locus_tag="VE567_00235"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0048034 - heme O biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HYZ47300.1"
                     /translation="MIVADASTPLPADWRDLFALTKPRVMSLVVFTALCGLLASRAPV
                     DPVLGFTAILCIALGAGASGALNQWYEADLDAKMKRTAKRPLPAGRMDRQTALHFGVG
                     LAVFSVLFLGLATNWLAAAILAFSIFFYAVVYTIWLKPNTPQNIVIGGAAGAFPPLLG
                     WAAATGDVSALPALLFAIIFLWTPPHFWALALFVKTDYAAAGVPMLPVTAGVKATRQQ
                     ILLYSLVLAASAVAPWALGLTGAIYGLAATSLNLAFVVLAVRVWRNEATEPAGMGPEK
                     KLFAFSILYLFALFAALVLDRVLIA"
     gene            1633..1770
                     /locus_tag="VE567_00240"
     CDS             1633..1770
                     /locus_tag="VE567_00240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47301.1"
                     /translation="MIDPDRQDEIRARQRSRALVTALILGAFVVLFFFVTSAKMRGMH
                     S"
     gene            1767..2321
                     /locus_tag="VE567_00245"
     CDS             1767..2321
                     /locus_tag="VE567_00245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017672509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HYZ47302.1"
                     /translation="MNELTARNRRAASIAGLVVLFMVALGFASVPLYRVFCQATGLNG
                     TTSRASEADLPVRAATGTVMVRFDANTQPGLPWDFRPEKPLQQVRIGERNMAFFIAQN
                     LGKRPITGRASYNVQPDTAGSYFKKIQCFCFTEQTLQPGERVRMPVIFFVAPGLRQDP
                     DAKDIQQITLSYTFYPVDSPAKGS"
     gene            2357..3202
                     /locus_tag="VE567_00250"
     CDS             2357..3202
                     /locus_tag="VE567_00250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004208605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HYZ47303.1"
                     /translation="MAGAKHHDYHILPPSPWPLLGSFSALFMAAGGIMWMHAYAYGGW
                     VFALGVAGVLFTMYSWWSDVIREAHAGDHTPVVQLHLRYGMILFIASEVMFFVGWFWA
                     WFDFSLFPVPLEFKDGAVTVVQGAAHWPPKGLAVIDPFAFPLLNTLILLCSGTTVTWA
                     HHALIHGDRDGLKKGLWLTILLGMLFTSIQAYEYMHAPFPFKGLNYGASFFMATGFHG
                     FHVIVGTIFLIVCLIRAYRGDFTPRQHFGFEAAAWYWHFVDVVWLFLFLSIYVWGGWG
                     APHAG"
     gene            3238..3810
                     /locus_tag="VE567_00255"
     CDS             3238..3810
                     /locus_tag="VE567_00255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SURF1 family protein"
                     /protein_id="HYZ47304.1"
                     /translation="MKRLPLLPTLFVIAAVAAMIGLGVWQLERLQWKRDLLARYAAAQ
                     GLAPIPFPAGPDPKNPPLFRRSSALCLGVAGWRAESGRNLKDEPGWVHIAACRTGAEG
                     PGFQAVMGWSAKPDRPDWKGGPVAGVIGSDREHVIRLIAADPAPGLQPAKPPSLDDVP
                     NNHLFYAIQWFFFAGAALVIYILALRKRSG"
     gene            3822..5213
                     /gene="thrC"
                     /locus_tag="VE567_00260"
     CDS             3822..5213
                     /gene="thrC"
                     /locus_tag="VE567_00260"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HYZ47305.1"
                     /translation="MHYVSTRGAAPRLDFESVTLAGLAADGGLYMPEHWPQLSRDEVA
                     GLAGLSYVETAVRVMRPFVGNALGEEELRALCTQAYGRFAHRAVTPLVQLDERHWVLE
                     LFHGPTLAFKDVALQLLGLLFERFLRDRDTHLTVIGATSGDTGSAAIDALAGRAKVDI
                     FMLHPLGRVSDVQRRQMTTVWAPNVHNIAIEGNFDDAQALVKAMFADQGFAGRFNLSA
                     VNSINWARLMAQIVYYFYAAVRLGAPDRPVAFSVPTGNFGDVFAGYAAAKMGLPVARL
                     IVATNVNDILHRALSTGDYSAADVTPTATPSMDIQVSSNFERLLFDLDPAAIPGQMAT
                     FARDRAKRLTPAQLEGAAKLFASARVDADGMALAMRWACEGSGQILDPHTAVALAAAR
                     ESELAADIPIVTLATAHPGKFRDAVERATGLRPALPSRVGALFDREERYEVLPAELGA
                     LTDYIAERATPRA"
     gene            5206..6069
                     /locus_tag="VE567_00265"
     CDS             5206..6069
                     /locus_tag="VE567_00265"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYZ47306.1"
                     /translation="MPDLGLLVAEPWADYGLIDCGHGRKLERYGRFRFVRPEPQALWA
                     PANPDWQADAEFVPGSDEEGGGRWRFDKPVPREGWPLGWEDVRFTAQCTPFRHLAFFP
                     DMAPIWAWIRSLKPASALNLFGYTGVGTLALSAAGAEMVHVDASKKSVEAARANATLS
                     AMADRPIRWIVDDAAKFVAREARRGRRYDGIILDPPKYGRGPEGEVWKLEEGLAPLIA
                     DCRKLLDSESRFLFLTVYAVRMSALAIGELVAQAFADLPGRVEMGELAVREEARGLLL
                     PTAIWARWRND"
     gene            complement(6066..6704)
                     /locus_tag="VE567_00270"
     CDS             complement(6066..6704)
                     /locus_tag="VE567_00270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019051502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015232 - heme transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HYZ47307.1"
                     /translation="MLSLILRDVAQAWRAGGAMLPVVFFLLVATLFAFAVGPDAGLLA
                     RTGGGVLWMAALLAALLPVDRLIEPDRLNGVLDQLALRGASDESVAAAKLIGHWLSFG
                     PPLMLSVLPAAALLRIDADTLLRLEAGLAIGTPALAALGLTVSALTAGLRGAGALGGL
                     LMLPLAVPVLIFGAGALIDGGGAALKLLAAVSLLLVAGAPFAAGAALRAART"
     gene            complement(6706..7284)
                     /gene="ccmA"
                     /locus_tag="VE567_00275"
     CDS             complement(6706..7284)
                     /gene="ccmA"
                     /locus_tag="VE567_00275"
                     /EC_number="7.6.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015439 - ABC-type heme transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC exporter ATP-binding protein CcmA"
                     /protein_id="HYZ47308.1"
                     /translation="MSSLRFDDVAVLRGGRLLFERVSFVLGPGAAAVVTGPNGAGKSS
                     LIRVAGGLLGAAAGRVVRDGGVALADENAALDRELPLAQALQFWARLDRRADALGQAM
                     EAMGLAHLAPVPVRMLSTGQRKRAALARVIASGAPIWLLDEPTNGLDGEAIGRLEQAC
                     AAHQAAGGIILAATHQPLRLRSAQSVSLASGA"
     gene            complement(7281..7682)
                     /locus_tag="VE567_00280"
     CDS             complement(7281..7682)
                     /locus_tag="VE567_00280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase family protein"
                     /protein_id="HYZ47309.1"
                     /translation="MAEQATYPPDLAAIERLALAALDRLPPQFRAHLGDVMIRVEEFA
                     DDRTLDEMGIDDPFELTGLYRGRPIGDKSSMDSATLPDMIFLYRRPILDEWADTGVTL
                     EALVTHVLVHEVGHHFGLSDADMHALEDAAG"
     gene            7718..8008
                     /locus_tag="VE567_00285"
     CDS             7718..8008
                     /locus_tag="VE567_00285"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008124 -
                     4-alpha-hydroxytetrahydrobiopterin dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006729 - tetrahydrobiopterin biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HYZ47310.1"
                     /translation="MVEQLNEEQRAAALDRLGEWDYDEARDALTRSFLFADFSEAFAF
                     MTRVALLAEKMDHHPEWSNVWNRVDILLTTHDAGGLSERDVRMAGTIDLLES"
     gene            8057..8461
                     /locus_tag="VE567_00290"
     CDS             8057..8461
                     /locus_tag="VE567_00290"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043169 - cation binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HYZ47311.1"
                     /translation="MNQRIARLREQHDGLRALADTYERELARPEPDLAALARCRWTLA
                     RLASSHFAYERAFLYGELARRDISAQALAINLSELSDRLDRHVRQWTQAAITDDWQAY
                     GQASRALIGQLRTHMDREDQEVLPLLDQAKSA"
     gene            8767..8943
                     /locus_tag="VE567_00295"
     CDS             8767..8943
                     /locus_tag="VE567_00295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0080135 - regulation of cellular response
                     to stress [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PspC domain-containing protein"
                     /protein_id="HYZ47312.1"
                     /translation="MSAFRLDRGNAKLLGVCAGVGNATGIDPLLIRIALFVLTLLLGP
                     VMIAAYLLTAWVAS"
     gene            9013..9540
                     /locus_tag="VE567_00300"
     CDS             9013..9540
                     /locus_tag="VE567_00300"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007687616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HYZ47313.1"
                     /translation="MIRAALACSLLLSTAPALAALAPGAAAPDFSTQGALAGKPFSFS
                     LKQALKKGPVVLYFFPAAFTPGCTVEAHEFAEATPEFNKLGATVIGMSADPVDKLQKF
                     SVEECRNKFAVATATPAVVQGYDVALATKPGLTNRTSYVIAPDGKIVFAYTAMSPEGH
                     VSGTMDAVKKWKAKK"
     gene            complement(9553..10011)
                     /locus_tag="VE567_00305"
     CDS             complement(9553..10011)
                     /locus_tag="VE567_00305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HYZ47314.1"
                     /translation="MSIDQRLAELGIELPTPAAPVAAYVPAVEAGGLLYISGQVSQRD
                     GQRITGRLGQDLDMDAGRDAARTCGIMLLAQMKAALGSLDRVARVVKLGVFVNSTADF
                     TEQPKVADGCSLLMAEVFGEAGKHARSAVGVPALPLGVAVEVDAVVAIKA"
     gene            complement(10008..10661)
                     /locus_tag="VE567_00310"
     CDS             complement(10008..10661)
                     /locus_tag="VE567_00310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HYZ47315.1"
                     /translation="MTRPLLVTDCDEVLLHMVSHFRTWLGEVHGVDFDLSEGDYSRAV
                     RRRATGEPLPREQTWPLLNGFFETEMHRQTLVPHAREALAEIAGYADVVVLTNLLDVH
                     QERRVEQLSALGIQHRVLCNQGGKGTPVLQLIEEYRPAATVFVDDLAIHHASVEKAAP
                     QVFRLHMIAEPELAAVMPPAPSAHARIDDWAEAKDWIRTRLTSGLDARGEPVIGEPA"
     gene            complement(10658..10927)
                     /locus_tag="VE567_00315"
     CDS             complement(10658..10927)
                     /locus_tag="VE567_00315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3572 domain-containing protein"
                     /protein_id="HYZ47316.1"
                     /translation="MARFQTNHDPHTLALRALAWSLEDSRRAERLLALTGLTTNDLRG
                     RAGEPSCQAAVLAFLEAHEPDLIACAEALEVAPQALVAARRELEG"
     gene            10970..11332
                     /locus_tag="VE567_00320"
     CDS             10970..11332
                     /locus_tag="VE567_00320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018250532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYZ47317.1"
                     /translation="MRKKVLVVEDNELNLKLFCDLLRAHDYEAEPVRDGREAVDRARA
                     FEPDLVIMDIQLPNVSGLELIETLKADDQLKPIPIMAVTAYAAKGDEERIRAAGAEAY
                     VSKPISVDRFVRSVEDLV"
     gene            complement(11364..11531)
                     /gene="rpmG"
                     /locus_tag="VE567_00325"
     CDS             complement(11364..11531)
                     /gene="rpmG"
                     /locus_tag="VE567_00325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011454349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HYZ47318.1"
                     /translation="MAKPTTVKIKLVSSADTGFFYVTKKNPRTQTEKLSFRKYDPVVR
                     KHVEFKESKIK"
     gene            11694..12008
                     /locus_tag="VE567_00330"
     CDS             11694..12008
                     /locus_tag="VE567_00330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47319.1"
                     /translation="MHRESMLKVRADLCERIDGLKAAIPYASVAGLCDKASDVRHLAQ
                     QYELRAVADLAWKLEGRLARGERGPSVIDVLSLMREASECGRTDQDASRAWAAAASVR
                     LM"
     gene            12114..12602
                     /locus_tag="VE567_00335"
     CDS             12114..12602
                     /locus_tag="VE567_00335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010546025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HYZ47320.1"
                     /translation="MASDLKTPTDLADNRTRTVADALNGVLADAFALYLKTKNFHWHV
                     SGPHFRDYHLLLDEQAAEIIAVTDDIAERVRKIGNTTLRSIGDVARRQTIIDNDREFV
                     APGDMLAELREDNLKLVHRIREAREAAESAGDTATSSMADDWIDQAEKRAWFLFEASR
                     RS"
BASE COUNT         2053 a         4251 c         4114 g         2215 t
ORIGIN      
        1 cggtcgagga ctatctctat gtcgattcgc ccgaggggct gcttacctgc gtccagatgg
       61 gcacgatcga ggtgcatggt tggggcagcc gggtgccgga gatcgagaag ccggatcgca
      121 tggtcttcga tctcgatccg gacgaagggc tgggtttcga gcacgtcaag aaagccgcgc
      181 tcgacctgaa gcgctatctg ggcgacctcg gcctcgtcac tttcgcgatg ctctccggcg
      241 ggaagggcgt gcatgtcgtc gcgccgctca cgccccgcgc cgaatggccc gaggtgaaag
      301 acttcacgca ccgcttcgcg caggcgctgg agcagtcgga gcccgagcgt ttcgtcgcca
      361 acatgtccaa ggccaagcgc aaggggcgca tcttcgtcga ctatttgcgc aaccagcgcg
      421 gcgcgaccgc gatcctgccc tatgccgcgc gcgcccggcc gcacgcgccg gtcgcggcgc
      481 cggtgagctg ggaggaactg aaggacctcg acaccgccgc gcgctatacc gtgctggatg
      541 gagacgtact gatcgagcgt gcgaatagcc gcagcctcaa gggctggggc gtcgccgacc
      601 aggcgctgcc ggatttctag cgcggcgttc ctaattaaat ccgatcgctt cgagcgacgt
      661 ccggctaatc acctgagcgc cgcgcgcggc ttcccctccg cgccgctccg gcctatatgg
      721 ccgcgattcc atgatcgtgg ccgacgcctc cacacccctg cccgccgatt ggcgggacct
      781 gttcgcgctg accaagccgc gtgtgatgtc gctcgtcgtt ttcaccgcgt tgtgcggcct
      841 gctcgcctcg cgcgcgccgg tcgacccggt gctgggcttt actgccatcc tgtgcatcgc
      901 gctgggcgcg ggcgcgtcgg gcgcgctcaa ccaatggtat gaggccgatc tggacgcgaa
      961 gatgaagcgc acggcgaagc ggccgcttcc cgccggccgc atggaccgtc agacggcgct
     1021 ccatttcggc gtcggcctcg cggtcttttc cgtgctgttc ctggggctgg cgaccaactg
     1081 gctggcagcc gcgatcctgg ccttttcgat cttcttctac gccgtcgtct atacgatctg
     1141 gctgaagccc aacacgccgc agaacatcgt gatcggcggg gcagcgggcg cgtttccgcc
     1201 cctgctcggc tgggcggcgg cgacgggcga cgtctcggcg ctgccggcgc tgctcttcgc
     1261 gatcatcttc ctgtggacgc cgccgcattt ctgggcgctc gcgctgttcg tgaagaccga
     1321 ctatgccgcc gcgggcgtgc cgatgctgcc agtgaccgct ggggtcaagg cgacccggca
     1381 gcagatcctg ctctacagcc tcgttctcgc cgcgagcgcc gtcgccccct gggcgctggg
     1441 gctgaccggc gcgatctatg gcttggctgc tacgtcgctc aaccttgcct ttgtcgtgct
     1501 cgcggtccgc gtctggcgca atgaggcgac cgaaccggcc ggcatgggcc cggagaagaa
     1561 attgttcgca ttctcgatcc tttatctgtt cgcgctgttc gcggcgctcg tcctcgaccg
     1621 ggtgctgatc gcatgatcga tcctgatcgg caggacgaga tacgcgcacg ccagcgttcg
     1681 cgcgccttgg tgacggcgct gatcctgggc gcgttcgttg tgctcttctt cttcgtcacc
     1741 agtgccaaga tgagaggcat gcactcgtga acgagctcac cgcccgcaac cgccgcgctg
     1801 catccatcgc cgggctggtc gtgctgttca tggtggccct cggcttcgcg tcggtgccgc
     1861 tctatcgtgt gttctgtcag gcgacgggcc tcaacggaac gaccagccgg gcaagcgagg
     1921 ccgacctgcc cgtccgcgcc gcgacgggca cagtgatggt ccgcttcgac gccaacaccc
     1981 agccgggcct gccctgggat ttccggcccg aaaagccgct gcagcaggta cgcatcggcg
     2041 agcggaacat ggcatttttc atcgcgcaga atctcggcaa gcgcccgatt accgggcgtg
     2101 cgagctacaa tgtgcagccc gatacggcag gcagctattt caagaagatc cagtgcttct
     2161 gctttaccga gcagacgctg cagcccggcg agcgggtgcg catgccggtc atcttcttcg
     2221 tcgcacccgg cctgcgccag gatccggacg cgaaggacat tcagcagatc acgctcagct
     2281 acactttcta cccggtggat tcccccgcga agggaagcta gagggcgaag caaagggttc
     2341 aatcagggaa agcttcatgg ccggcgccaa gcaccacgac tatcatattc ttcctcccag
     2401 cccctggccg ctgctcgggt ccttctcggc gctgttcatg gcggcgggcg gcatcatgtg
     2461 gatgcacgcc tatgcctatg gcggctgggt gttcgcgctc ggcgtcgcgg gcgtgctgtt
     2521 caccatgtac agctggtggt cggacgtgat ccgtgaggcg catgccgggg accatacgcc
     2581 ggtggtgcaa ctccacctgc gctacggcat gatcctgttc atcgcctccg aagtgatgtt
     2641 cttcgtcggc tggttctggg cgtggttcga cttctcgctg ttcccggttc ccctcgaatt
     2701 caaggacggc gccgtgacgg tggttcaggg cgcggcgcat tggccgccca aggggctggc
     2761 ggtcatcgat ccgttcgctt tcccactcct caacacgctg atcctgctct gctccggcac
     2821 cacagtcacc tgggcgcatc acgccctgat ccatggcgac cgggacgggc tgaagaaggg
     2881 gctgtggctg accatcctgc tcgggatgct gttcacctcg atccaggcct atgagtatat
     2941 gcacgcgcct ttccccttta agggcctgaa ttacggcgct tccttcttca tggcgacggg
     3001 ctttcacggc ttccacgtga tcgttggcac gatcttcctg atcgtctgcc tgatccgcgc
     3061 ctatcgcggc gacttcaccc cgcgccagca tttcggcttc gaagccgcgg cctggtactg
     3121 gcatttcgtc gacgtggtgt ggctgttcct cttcctctcc atctatgtgt ggggcggctg
     3181 gggcgcaccg cacgctggct gacgacccgt ttcccgttcc catccgcggg cggcggcgtg
     3241 aagagattgc cgctgcttcc cacgctcttc gtcatcgccg ccgtcgcggc gatgatcggg
     3301 cttggcgtgt ggcagctcga gcggctgcag tggaagcgcg acctgctcgc tcgatacgcc
     3361 gcggcgcagg gtctggcgcc cattcctttt ccggctggcc ccgatcccaa gaacccgccg
     3421 ctgttccgcc gttcctcggc gctgtgcctg ggcgtggcgg gctggcgcgc ggagagcggg
     3481 cgcaacctca aggacgagcc cggttgggtg cacattgccg cctgtcgcac tggcgccgaa
     3541 ggccccggct tccaggccgt gatgggctgg tcggcaaagc ccgatcggcc ggattggaaa
     3601 ggcgggccgg tcgcgggtgt catcggctct gaccgcgagc atgtaatccg cctgatcgcc
     3661 gccgatcccg cgcccgggct ccagcccgcc aagccgccct cgctcgacga cgttcccaac
     3721 aaccacctct tctatgcgat ccagtggttc ttcttcgctg gcgcggcgct ggtgatctac
     3781 attctggcgc ttcgcaagcg cagcggttaa gcccgccggt catgcactat gtgagcacca
     3841 ggggggccgc gcctcggctc gacttcgaga gcgtcacgct ggcggggctg gcggcggacg
     3901 gcggactgta catgccggag cattggccgc agctttcgcg cgacgaggtc gccggcctgg
     3961 ccggcctttc ctatgtcgag accgcggtgc gcgtgatgcg cccctttgtc ggcaacgcgc
     4021 ttggcgagga ggagctgcgc gcgctctgca cccaagccta tggccgcttc gcgcaccggg
     4081 cagtcactcc gctcgtccag ctagacgaac gtcattgggt gctggagctg ttccacgggc
     4141 ccacgctcgc cttcaaggac gtggcgctgc agctcctggg cctgttgttc gagcgtttcc
     4201 tgcgcgaccg cgacacccat ctgacggtga tcggcgcgac ttcgggtgat acggggtcgg
     4261 ccgcgatcga cgcgctggcc gggcgcgcca aggtcgatat tttcatgctg catccgctcg
     4321 gccgcgtgtc ggacgtgcag cggcggcaga tgacgacagt gtgggcgccc aacgtccata
     4381 acatcgccat cgaaggcaat ttcgacgacg cccaggcgct ggtgaaagcg atgttcgccg
     4441 atcagggctt tgccgggcgt ttcaatctct cggcggtcaa ctcgatcaac tgggcgcggc
     4501 tgatggccca gatcgtctat tatttctacg ctgcggtccg gctcggcgcg ccggaccggc
     4561 ctgtcgcttt ttcagtgccg accggtaatt tcggcgacgt tttcgccggc tatgcagcgg
     4621 ccaagatggg gttgcccgtt gcccggctca tcgtcgcgac aaacgtcaac gacattctcc
     4681 accgcgcgct ctcgaccggc gattattcgg ccgcagacgt gacgccgacc gccacgccct
     4741 cgatggacat tcaggtcagc tccaacttcg agcggctgct gttcgatctc gatcccgccg
     4801 ccatccccgg ccagatggcg accttcgccc gcgaccgggc aaagcgcctg acgccagcgc
     4861 agctggaagg tgctgcgaag ctgttcgcca gcgcgcgggt cgacgccgac ggcatggcgc
     4921 tcgcgatgcg ctgggcttgc gaagggtcgg gccagattct cgacccgcat actgccgtcg
     4981 ccctcgccgc cgcgcgcgag tcggagcttg cggccgacat cccaatcgtc acgctcgcaa
     5041 ccgcccatcc gggcaaattc cgcgacgcgg tcgagcgcgc gacgggcctg cggccggcgc
     5101 tcccgtcgcg cgtcggcgcg ctgttcgatc gcgaggagcg gtatgaggtg ctgccggcgg
     5161 agctgggcgc cttgaccgat tatattgcgg agcgcgccac gcctcgtgcc tgacctcgga
     5221 cttctcgtgg ccgagccatg ggccgattat gggctgatcg attgcgggca tgggcggaag
     5281 ctcgaacgct atggccgttt ccgctttgtc cggcccgagc cgcaagcgct ctgggctccc
     5341 gcaaaccccg attggcaggc cgatgccgaa ttcgtgcccg gatccgacga ggaaggcggt
     5401 ggccgctggc gcttcgacaa gccggtgcca cgcgaaggct ggccgcttgg ctgggaggac
     5461 gtgcgcttca cggcccagtg cacgcctttc cggcatctgg ccttcttccc cgacatggcg
     5521 cccatatggg cctggattcg aagcctcaag cccgccagtg ccctgaatct gttcggctat
     5581 accggcgtcg ggacgctcgc cctttccgcc gcgggcgccg aaatggtgca tgtcgatgcc
     5641 tccaagaaat ccgtggaggc cgcacgcgcc aacgcgacgc tgtcggctat ggccgaccgg
     5701 ccgatccgct ggatcgtcga cgacgccgcg aaattcgtcg cgcgcgaggc ccggcgcggg
     5761 aggcgctacg acggcatcat cctcgatccg cccaaatatg gccgcggacc cgaaggtgag
     5821 gtgtggaagc tcgaagaagg gctcgcgccg ctgatcgccg attgccgcaa actgctcgac
     5881 agcgagagcc ggttcctgtt tctcaccgtc tatgcggtac gcatgtccgc gcttgccatc
     5941 ggcgaactgg tggcgcaagc ctttgccgac ctgccgggcc gcgtcgaaat gggcgagctc
     6001 gccgtccgcg aagaagcgcg cggccttctc ctccccaccg ccatctgggc gcgctggcgc
     6061 aacgactagg tacgtgcggc ccggagcgcc gcacccgcgg cgaacggggc gccggcgacc
     6121 agcaggagcg agacggcagc gagcagcttc agcgcagcgc caccgccgtc gattagcgcc
     6181 ccggcaccga aaatcagcac cggcacggca agcggcagca tcagcagccc gcccagcgct
     6241 ccggcgccgc gcagccccgc ggtcaaggcg ctgaccgtca gcccgagcgc cgcgagcgcg
     6301 ggcgtgccga tcgccagccc cgcttcgagc cggagcagcg tgtccgcgtc gatccgcagc
     6361 aaagcggccg ccggcagcac cgacagcatc agcggagggc cgaagctcag ccagtgcccg
     6421 atgagcttgg cggccgcgac gctctcgtcc gacgcccctc gtagcgcgag ctgatcgagc
     6481 acgccgttca ggcggtccgg ctcgatcagc cgatcgacgg gaagcagcgc ggcgagcagc
     6541 gctgccatcc acagcacgcc gccgccggtg cgcgcgagca ggccggcatc gggtcccact
     6601 gcgaacgcga acaaagtcgc gaccagcagg aagaagacga ccggcagcat cgctccgccg
     6661 gcgcgccagg cttgggcaac gtcgcggagg atcaggctca gcatctcagg ccccgctcgc
     6721 cagagagacg ctctgggccg atcgaagccg cagcggctga tgcgtggccg cgagaatgat
     6781 tccgcccgcc gcctgatggg ctgcgcaggc ctgttccagc cggccgatcg cttccccgtc
     6841 gagcccgttg gtcggctcat cgagcagcca gatcggcgcg ccgctcgcga tcacgcgcgc
     6901 gagcgcggcg cgtttgcgct gcccggtcga gagcatccgc accggcaccg gcgcgagatg
     6961 ggcaaggccc atggcttcca tcgcttgccc gagtgcgtct gcgcggcgat cgagcctcgc
     7021 ccagaactgt agcgcctggg cgagtggcag ctcgcggtcg agcgctgcgt tctcgtcggc
     7081 aagagcaacc ccgccgtccc gcacgacgcg acctgccgcg gcgccgagca gccccccggc
     7141 gacacggatc aagctcgact tgccggcgcc gttggggccg gtcaccaccg cggccgcgcc
     7201 gggcccgagc acgaacgaca ccctctcgaa cagcagccgc ccgccgcgta gcacggcaac
     7261 gtcatcgaag cgcagcgaac tcaccccgcg gcgtcttcca acgcgtgcat gtcggcgtcc
     7321 gacaggccga aatgatggcc gacttcgtgc accagcacat gagtgacgag cgcttcgagc
     7381 gtcacgccgg tgtcggccca ttcatcgagg atcggacggc gatagaggaa aatcatgtct
     7441 ggcagcgtgg cgctgtccat cgagcttttg tcgcctatcg gccggccgcg gtaaaggccg
     7501 gtcagctcga acggatcgtc gatgcccatc tcgtcgagcg tccggtcgtc ggcaaactcc
     7561 tcgacccgga tcatgacatc gcccagatgc gcgcggaatt gcggcggcag tcgatccagc
     7621 gctgccagcg caaggcgctc gatcgccgcc agatcgggcg ggtaggttgc ctgttcggcc
     7681 atggcgatga catagggcca agtcgaggag agggacaatg gtcgagcaat tgaacgaaga
     7741 gcagcgcgcc gccgcactcg ataggctggg cgagtgggat tatgacgaag cgcgcgacgc
     7801 gctgacccgc agcttcctgt tcgctgattt ctccgaagct ttcgccttta tgacgcgggt
     7861 ggcgttgctc gccgagaaaa tggaccacca cccggaatgg tcgaatgtgt ggaaccgggt
     7921 ggatatcctg ctcacgaccc acgatgcagg cgggctttcg gaacgcgatg tccgcatggc
     7981 cggcaccatc gatctcctgg aatcttaaac ctttgctcac ctcttgccgc caagcttggc
     8041 caaaagaggg gtcgcaatga accaacggat cgccaggctg cgcgagcagc atgatggcct
     8101 gcgcgcgctc gccgatacgt atgagcggga gctggctcgg cccgaacccg atctggctgc
     8161 actcgcgcga tgccgatgga cgcttgcccg ccttgcctcg tcccatttcg cctatgagcg
     8221 cgcctttctt tacggtgagc tcgcgcggcg ggatatatcg gcccaggcgc tcgccataaa
     8281 tctgtccgaa ctcagcgatc ggctcgaccg ccatgtccgg caatggacac aggcggcgat
     8341 cacggacgat tggcaagcct atggccaagc ctcgcgcgcg ctgatcgggc agcttcgcac
     8401 gcatatggat cgcgaggatc aggaagtgct cccattactc gaccaggcaa aatccgccta
     8461 aagctggatc attgcgccaa cacatttggc gtattttccc aacctgatcg tggtgcggtg
     8521 ccgctcgctt aggctaaacc gccgtttctg caattggcac ggctcatgct tatcacctgg
     8581 tgtgccggac ggaatggtcc aaccggcccg ccagggagat ttgaaatgac tcgctttgct
     8641 tcgctgttcg acaccgtcgc gtccgtcgcc gccgccgttg cggtcgccgc catgttcgtc
     8701 gtcgccgcag tcggccccgc cgcgctgccg atggttgcct aacccacgcg ccaggaggtc
     8761 agtcccatgt ctgcattccg tctcgatcgc ggcaacgcca aactgctggg cgtctgcgcg
     8821 ggagtgggca atgcaaccgg catcgatccg ttgttgatac gcatcgcgct gttcgtgctc
     8881 acgctgttgc tcggcccggt gatgatcgcc gcctatctgc tgaccgcctg ggtagcgagc
     8941 tgatctggtc tttgaagctc ggggcgctta acatcggggc gccccgaagc ttccttccaa
     9001 ggacataacc cgatgatccg cgccgccctc gcctgctcgc tgctgctctc gaccgctccc
     9061 gcccttgccg ctctggcccc gggagccgcc gcccccgatt tcagcaccca aggcgcgctg
     9121 gcgggcaaac cgttcagctt ctcgctcaag caggcgctga agaaaggccc ggtggtcctc
     9181 tatttcttcc ccgccgcctt cacgcccggc tgcaccgtcg aggcgcatga gttcgccgag
     9241 gcgacccctg aattcaacaa gctcggcgcg accgtgatcg gcatgtcggc cgacccggtc
     9301 gacaagctcc agaagttctc ggtcgaggag tgccgcaaca agttcgcggt cgcgactgca
     9361 accccggcgg tggtccaggg ctatgacgtt gcgctcgcga ccaagcccgg tctcaccaac
     9421 cggacgtcct atgtgatcgc gcccgatggc aagatcgtct tcgcctatac ggccatgagc
     9481 ccggaagggc atgtcagcgg gacaatggac gccgtgaaga agtggaaagc gaagaaatag
     9541 gaccgggccc ggtcaggcct tgatcgccac caccgcgtca acttcgaccg cgacgccgag
     9601 cggcagggcc ggcacgccga cggcgctgcg ggcgtgcttg cctgcctcgc cgaacacctc
     9661 ggccatcagc agcgagcagc cgtcggcaac tttgggctgt tcggtaaagt cggccgtcga
     9721 gttgacgaac acgccgagct tcaccacccg cgccacccgg tcgagcgagc cgagcgccgc
     9781 cttcatctgc gccagcagca tgatgccaca ggtccgcgcg gcatcgcggc cggcatccat
     9841 gtccagatcc tggcccagcc ggccagtgat ccgctggccg tcgcgctgcg acacctgtcc
     9901 ggagatgtag agcagcccgc ccgcttcgac tgcgggcaca taggcggcaa cgggggcggc
     9961 gggggtgggc agctcgatgc cgagttctgc gaggcgttgg tcgatgctca tgcgggttcc
    10021 ccaatcaccg gctcgccacg cgcgtcaagg ccggaagtca gtcgcgtgcg gatccagtcc
    10081 ttcgcttccg cccagtcgtc gatccgcgca tgagcggacg gggcgggcgg catgaccgcg
    10141 gccagctccg gttcggcgat catgtgcagc cgaaacacct ggggcgccgc tttctcgact
    10201 gaggcatgat ggatggcgag atcgtcgacg aagaccgtcg ccgcggggcg atattcctcg
    10261 atcaactgca gcacgggcgt gcctttgccg ccctgattgc aaagcacgcg atgctgaatg
    10321 ccgagcgccg agagctgctc gacccgtcgc tcctggtgca cgtccagcag gttggtgagc
    10381 accaccacat cggcataacc ggcgatctcg gcgagcgcct cgcgggcatg cggcacgagg
    10441 gtctgacggt gcatctcggt ttcgaaaaag ccattgagca gcggccaggt ctgttcgcgc
    10501 ggcagcggtt cgccggtggc gcggcgcctg acagcgcgcg aataatcacc ttcggacagg
    10561 tcgaaatcca cgccatggac ctcgccgagc caggtacgaa aatggctcac catgtgcagc
    10621 agcacttcgt cgcaatccgt aacgagcagg ggccgagtca tccttcgagc tcccttcgcg
    10681 ccgcgaccag ggcttgcggc gcgacctcca aggcctcggc gcaggcgatc aggtccggct
    10741 catgcgcttc cagaaacgcc agcactgccg cctggcacga cggctccccc gcgcggccgc
    10801 ggaggtcatt cgtggttaac cctgtcagcg caagcaacct ctcggcacgc cgcgagtctt
    10861 cgagggacca ggcgagcgcg cgcaaggcga gcgtatgggg gtcgtgattt gtttggaagc
    10921 gagccataag ctatgttgaa aggtctgagg ccaggtgtgc gaggcgtttg tgcgtaaaaa
    10981 ggtgctcgtt gtcgaggaca acgaactcaa cctcaaactg ttttgcgact tgctgcgcgc
    11041 gcacgactat gaagcagagc cggtgcggga cggacgcgag gccgtggacc gcgcccgcgc
    11101 gttcgagccc gaccttgtca tcatggacat tcagctaccc aacgtcagcg gcctcgagct
    11161 tatcgagacg ctgaaagccg acgatcaatt gaaaccgatc ccgatcatgg cggtcacggc
    11221 ctacgccgcc aagggcgacg aggagcgcat ccgcgcagcc ggcgcggaag cctatgtatc
    11281 gaagccgatc tcggtcgacc ggttcgtgag gagcgtggag gatttggtct aatttccctc
    11341 ccacggacgg gaggggacga agatcacttg atcttcgatt ccttgaactc gacgtgcttg
    11401 cgcacgacgg gatcatattt gcggaacgac agcttctcgg tctgggtccg cgggttcttc
    11461 ttcgtcacat agaaaaagcc ggtgtcagcg gagctgacga gcttgatctt gacggtggtc
    11521 ggcttggcca tggctctctc ggatgtcgca aaacgaaaag agcggcgtcg cagccgctcg
    11581 gtcagtcgcg ccccatgctc cggatgtccg gcaaagtcaa gccgacgccg ctttaaccgc
    11641 ctcttcactg ccccggagta gccttcggcg acgcaggggg cagagggggc gatatgcacc
    11701 gggaaagcat gctcaaggtc cgcgcggatc tgtgcgagcg aatcgacggc ttgaaggcgg
    11761 ccattcccta cgcaagcgtc gcgggcctgt gcgacaaggc ctcggacgtg cgccatctcg
    11821 cccagcaata tgagctccgc gcggtcgccg acctcgcctg gaagctcgaa ggccggctcg
    11881 cacgcggcga gcgcgggccg agcgtgatcg atgttctgtc gctgatgcgg gaagcgagcg
    11941 agtgcgggcg cacggaccag gatgcgtcgc gcgcctgggc ggcggcggcc tcggtccggc
    12001 tgatgtaagc gggcgatcac aggaatcgag agaatcgccg gagcgttcag cttgccgaac
    12061 cgttgtgaag acctcatttc cggggcgcaa cgacggaggc aaaagtggcg accattgcaa
    12121 gcgacctcaa aaccccgacc gacctggcgg acaatcggac tcgcaccgtc gcggatgcgc
    12181 tgaacggcgt cctcgccgat gcgttcgcac tgtatctcaa gaccaagaat ttccactggc
    12241 acgtttcggg cccgcatttc cgcgattatc acctgctgct ggacgagcag gcggccgaga
    12301 ttatcgccgt caccgacgac attgccgagc gcgtgcgcaa gatcggcaac accacgctcc
    12361 gttcgatcgg cgacgtcgcg cggcgccaaa cgatcatcga caatgatcgc gagttcgtgg
    12421 cgcccggcga catgctcgcc gagctgcgcg aggacaatct gaagctggtg caccgcatcc
    12481 gcgaagcccg cgaggcggcc gagtcggctg gcgacaccgc gaccagctcg atggccgacg
    12541 attggatcga ccaggccgaa aagcgggcct ggttcctctt cgaagcaagc cgccggagct
    12601 agccggccgg ggcaggaggc tgtaggcgga ccc
//
LOCUS       DASQVK010000015         7296 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_1111, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000015 DASQVK010000000
VERSION     DASQVK010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 7296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7296
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1111"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..335
                     /locus_tag="VE567_00340"
     CDS             <1..335
                     /locus_tag="VE567_00340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010217616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HYZ47321.1"
                     /translation="HGREGREVFHLPDGRELTLPVNSPILFYLQRLRDEAHRFAIGAH
                     RQKRAKAIGASSLDEVPGIGPARKKALLMHFGTAKAVRAASLEDLQKAPGVSRSVAQQ
                     VYDFYHSR"
     gene            332..934
                     /locus_tag="VE567_00345"
     CDS             332..934
                     /locus_tag="VE567_00345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004207380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein O N-terminal
                     domain-containing protein"
                     /protein_id="HYZ47322.1"
                     /translation="MIVTGPALIVAVRAHGEHGAIVRALTPEHGLQAGYVRGGRSRRL
                     RPVLLPGNLVEAEFRARVEEQLAAATVELAHSRAPLLSEPLPAAGIEWVTALVAAALP
                     EGQPYSALYEGLSGVLDAIEHAPSARGWALALARFEQLLLLHLGFGGASGTEATVRDM
                     LRVNGAALQEHLFVDRRVDVMAARERLVERLKRSFPASRA"
     gene            1007..2050
                     /gene="leuB"
                     /locus_tag="VE567_00350"
     CDS             1007..2050
                     /gene="leuB"
                     /locus_tag="VE567_00350"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017502837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HYZ47323.1"
                     /translation="MLVAVLPGDGIGPEVIAEAVRVLDALELGLRFEEAPVGGAAYKA
                     EGHPLPPPTLDLARRADAILFGAVGDPDCDMLARELRPEQAILGLRRELGLFANLRPA
                     KAFPELVDTSALKPDIAAGIDLMIVRELTGDVYFGTPRGRRTTLSGRREGFDTMRYDE
                     AEVARIARLGFETAQKRRRQLCSVDKANVLETSQLWRDVVIEVAADFPDVELTHMYVD
                     NAAMQLVRNPQAFDVVVTGNLFGDILSDQASMCVGSIGLLPSAALDADGKGLYEPIHG
                     SAPDIAGQGKANPLATILSAAMMLRYSLGRAEAAKRIEAAVAAALRAGARTADLGGAL
                     STREMGERVLANL"
     gene            2047..3183
                     /locus_tag="VE567_00355"
     CDS             2047..3183
                     /locus_tag="VE567_00355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010403873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYZ47324.1"
                     /translation="MKPGVSRPASLEASAQGLELAVVIPTFNEAGNVRELIDRLHAAL
                     SGREWEAIFVDDASPDGTAQVLRDLAREDRRIRVIERIGRRGLSSACIEGMMATGAPL
                     IAVMDADLQHDPQVLNALARELERDSELDLAIASRFVRGGGTGDWDRDRVIKSEQASR
                     IARLVLDTDLADPMSGFFMIRARRFRELAPDLSGIGFKILLDLMTRARSPLRFVEVPL
                     VFHRREEGESKLDYVVELEFLLALYDRLFGRIVPTRFAMFAAIGALGVILHMSILGIT
                     YGLLRLSFVPAQMVATMGAMTFNFFLNNALTYRDRRLRGRALLRGWFSFCAVCSVGAL
                     ANIGVAAFLFTERFAYATASALAGVLVAAVWNFALSSRFTWGRY"
     gene            complement(3180..4400)
                     /locus_tag="VE567_00360"
     CDS             complement(3180..4400)
                     /locus_tag="VE567_00360"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010403871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HYZ47325.1"
                     /translation="MKSLVGWLERFTPLRMALLLALVAELLFAVHLGQPTKLMFDEVH
                     YVPAAHDIFWLIRPANEEHPLLAKWLIGLSIALFGDNSIGWRALSTAAGVATMLSIYA
                     IALKLFGDVRTAATAALLALLNQMLFIQARIAMLEIYAGAFLFAAIALLVWGRDRPGQ
                     RWPIGAGICMGLSVACKWSALPLFPVLGLGVLIFWPAPRFRAALAFGVAALIAYFASF
                     APAFFYAERSLKLDQLLSWQLHMFEMQTRPLPQHTYQSSPWQWPLITRPIWYLYEPVE
                     GVQRGILLVGNPAIMWGGLVALAACIWDGIKDRKPPLLILSALYLASYGAWLAIPKKI
                     GFYYYYYFPGLFLPLLIAGTFHNAYRREERWLPAGFIALSFVLFAYFYPILSAAPLPD
                     DRAFEHWMWLSTWP"
     gene            4452..5657
                     /locus_tag="VE567_00365"
     CDS             4452..5657
                     /locus_tag="VE567_00365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010164685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYZ47326.1"
                     /translation="MKRRTGQDRSITAKWRPATLAVRGGTARSEWGETSEAIFLTSGY
                     AYDCAGDAAARFAGEQQGMTYSRLQNPTVEMLEHRIALLEGAEAARCMASGMAAMTAA
                     LLCQLSAGDHLVAARTMFGSCRWLTDSLLPRFGIETTIVDGSDSPAWERAIRPNTKVF
                     FFETPANPTLEIVDLAAVCGIAKAHGIVTVADNAFATSALQRPMSFGADIVAYSATKL
                     MDGQGRVLAGAVCGTSQFVNEVLLPFVRNTGPTLSPFNAWVVLKGIETLDLRVRRQSE
                     NALAVARFLEGRVPRILYPGLASHPQHNLAAAQMAAGGTILSFFVADRAQAHTLLDAL
                     ELIDISNNIGDSRSLMTHPSSTTHSGLAAEVRESMGITEGMLRLNIGLEDPQDLIEDL
                     DRALRAAGL"
     gene            5654..6052
                     /gene="apaG"
                     /locus_tag="VE567_00370"
     CDS             5654..6052
                     /gene="apaG"
                     /locus_tag="VE567_00370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010183908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Co2+/Mg2+ efflux protein ApaG"
                     /protein_id="HYZ47327.1"
                     /translation="MKALFPYAQTTRGVTVRVSVSYLPEQSDPDKGRWFWAYHIRIEN
                     EGRMAVQLLTRHWIIADGRGARHEVQGEGVVGEQPVIEPGASYDYVSGCPLSTPTGQM
                     RGSYRMIGEDGSMFDIAIPRFPLVAPAVQA"
     gene            6049..6834
                     /locus_tag="VE567_00375"
     CDS             6049..6834
                     /locus_tag="VE567_00375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYZ47328.1"
                     /translation="MKRTHLPMNGLRVLDAAARHLSFTRAADELAVTPAAVGQQIRAL
                     EDTLGVVLFRRTARGLELTPEAEAGLEALRQGFLCFEDAVRAMRAGQSSKVLTIAAPR
                     DLTAHWLAARLAEIAKEDPELRFHLVSADEAVDFTEANLDVAIRLMVDKGEHEGVRIG
                     GTVFARVARPGFTAEHWIAWPGHASKEALVWVADAGLAIEAAVQGLGRALVPELLARR
                     ALAAGALEEVGEPVDQGLGYWLFAPTPQWRQAKVKRLVEQLAV"
     gene            6983..>7296
                     /locus_tag="VE567_00380"
     CDS             6983..>7296
                     /locus_tag="VE567_00380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HYZ47329.1"
                     /translation="MRKIAFFAAAALAAVPAGATTLMPSDSGLTFSAMPAGTQGMQIA
                     YDEQAQTALTFAAIFRSAVYRNALGTLDFYYQVQRTGPGSLKNQEIKIFTASSFARFD
                     VDA"
BASE COUNT         1213 a         2342 c         2481 g         1260 t
ORIGIN      
        1 atcacggccg cgagggccgc gaagtgttcc acttgccgga cggacgcgaa ctcacgctgc
       61 cggtcaactc gccgatattg ttctatttgc agcggctgcg cgacgaagcc catcgcttcg
      121 cgatcggcgc ccaccggcag aaacgtgcga aagcgatcgg cgccagttcg ctcgacgaag
      181 tgcccggcat cgggccggcg cggaaaaagg cgctgctgat gcatttcggc accgcaaagg
      241 cagtgcgggc cgcaagcctg gaggatctgc agaaagcgcc cggcgtcagc cggagcgtgg
      301 cgcagcaggt gtacgacttc taccattcgc gatgatcgtc accggccccg ccctgatcgt
      361 tgcggtccgc gcacatggcg agcatggcgc gatcgtgcgg gcgttgacgc cggagcacgg
      421 gctccaggcc ggctatgtgc gcggcgggcg ctcgcggcgc ctgcggccgg tgctgctgcc
      481 gggcaatctg gtcgaggcgg agtttcgcgc gcgcgtcgag gaacagcttg ccgccgcgac
      541 cgtcgagctc gcccatagcc gcgcgccttt gctgtcggaa ccgctgccgg cggccgggat
      601 cgagtgggtg acagcgctgg tcgcggcggc gctgccggaa ggccagccct attccgcgct
      661 ctatgagggc ctttcgggcg tgctggatgc gatcgagcac gccccgagcg cgcgtggctg
      721 ggcgctggcg ctcgcgcggt tcgagcaatt gctgctgctc catctcggtt tcggcggcgc
      781 atcgggcacg gaagcaacgg tgcgggatat gctccgggtg aatggcgcgg cgttgcagga
      841 gcatttgttc gtggatcgtc gcgtggacgt catggcggcg cgggagcggc tcgtggagcg
      901 gctgaagcgc agtttcccgg catctcgggc ttgacccggg gtccgtccga cttacggcta
      961 taaaggatgt gccgggccta ttccggcgtg aaagggaggg gatcgcttgc tcgttgcagt
     1021 gttgccagga gatggcatcg ggcccgaggt cattgccgaa gcggtgcgtg tgctggacgc
     1081 gcttgaactc ggcctgcgat tcgaggaagc gccggtcggc ggcgcggcgt acaaggcgga
     1141 aggacacccg ctgccgcccc caactctgga cctcgcccgg cgcgccgatg cgatcctctt
     1201 cggggcggtc ggcgatccgg actgcgacat gctcgcccgc gagcttcggc ccgagcaggc
     1261 aattctgggg ctgaggcgcg agctcggcct gttcgccaat ctccgcccgg ccaaggcctt
     1321 tccggagctg gtcgacactt ccgcgctcaa gccggacatc gccgcgggca tcgacctgat
     1381 gatcgtgcgc gagctgaccg gcgacgttta tttcggcacc ccgcgcgggc ggcggaccac
     1441 cttgtccggc cggcgcgaag gcttcgacac catgcgctac gatgaggccg aagtggcgcg
     1501 gatcgcccgg ctcggcttcg agacggcgca gaagcgccgc cgccagctct gctcggtcga
     1561 taaggccaat gtgctcgaaa cctcgcagct ctggcgcgac gtggtgatcg aagttgccgc
     1621 cgattttccc gatgtcgagc tgacgcacat gtatgtcgac aatgccgcca tgcagctggt
     1681 ccgcaacccg caggcattcg acgtggtcgt taccggcaat ctgttcggcg acattctttc
     1741 cgaccaggcc tccatgtgcg tcggctcgat cgggctgctt ccctccgccg cgctcgatgc
     1801 ggacggcaag gggttatacg agccgatcca cggctcggcc ccggacattg ccggccaggg
     1861 caaggccaat ccgctcgcga ccattctctc ggcggcgatg atgctgcgct attcgcttgg
     1921 gcgcgccgaa gccgccaagc ggatcgaagc cgccgttgcc gcggcgctgc gagcaggcgc
     1981 gcgcaccgcc gatctgggcg gcgcgctctc cacccgtgag atgggcgaac gggtgctggc
     2041 gaatctatga agcccggcgt ctcccgtccc gcgtcgctcg aagcgagtgc gcaggggctg
     2101 gagctcgccg tcgtcatacc caccttcaac gaagccggta acgtccgtga gctgatcgac
     2161 cggctccacg cggcgctgag cggacgcgaa tgggaagcga ttttcgtcga cgacgccagt
     2221 ccggacggca cggcgcaagt gctgcgcgac ctcgctcgcg aagatcggcg catccgcgtc
     2281 atcgagcgga ttggccggcg cggcctgtcc tcggcctgca tcgaaggcat gatggcgact
     2341 ggcgcaccgc tgatcgccgt gatggacgcc gatctgcagc acgacccgca ggtattgaac
     2401 gccctggcgc gcgaacttga gcgcgactct gagctcgacc tcgccatcgc ctcgcgtttc
     2461 gtccggggtg gcggcaccgg cgactgggac cgggaccgcg tgataaagtc cgagcaggcg
     2521 agccgtatcg cgcggctggt gctggatacc gacctcgcag acccgatgag cggctttttc
     2581 atgatccgcg ccaggcgttt tcgcgagctg gcgccggact tgtcgggcat cggcttcaag
     2641 atcctgctgg acctgatgac cagggcgcgc agcccgctcc gcttcgtcga agttcccttg
     2701 gtctttcatc ggcgcgagga gggcgaatcg aagctcgatt atgtcgtcga gctcgaattc
     2761 ctgctggcgc tctacgaccg gctcttcggg cgcatcgtgc cgacccggtt cgccatgttc
     2821 gccgcgatcg gcgcgctcgg cgtgatcctc catatgagca tattgggcat cacctatggg
     2881 ctgctccggc tctcgttcgt gccggcgcag atggtcgcca cgatgggcgc gatgacgttc
     2941 aatttctttt tgaacaatgc gctcacctat cgcgaccgcc ggttgcgcgg gcgcgcgctg
     3001 ctacgcggct ggttcagctt ctgcgccgtg tgctcggtcg gcgcgctcgc caatatcggc
     3061 gtggccgcct tcctgttcac ggagcgtttt gcctatgcga cggcctctgc gctcgccggc
     3121 gtcctggtgg cggcggtctg gaatttcgcg ctatcgagcc gcttcacctg ggggcgctat
     3181 tagggccagg tcgagagcca catccaatgc tcgaacgccc ggtcgtcggg cagcggcgcg
     3241 gccgagagga tcgggtagaa ataagcgaac agcacgaagc tcaacgcgat gaacccggcc
     3301 ggcagccagc gttcctcgcg gcgataagcg ttatggaagg tccccgcgat cagcagcggc
     3361 aggaatagcc cgggaaaata atagtaataa tagaagccga tcttcttcgg aatcgcgagc
     3421 cacgcaccgt aggacgccag atagagcgcg ctcaggatca gcagcggggg cttccggtcc
     3481 ttgatcccgt cccagatgca cgcggcgagc gcgaccaggc cgccccacat gatcgcggga
     3541 ttgccgacca gcaggatgcc gcgctgcacg ccttccaccg gctcgtaaag gtaccagatc
     3601 ggccgggtga tcagcggcca ttgccagggc gagctttggt aggtgtgctg cgggagcggg
     3661 cgcgtctgca tttcgaacat gtgcagctgc cacgacagga gctggtcgag cttcagcgag
     3721 cgctcggcgt agaaaaaggc cggcgcgaag ctggcgaaat aggcgatgag cgccgccacg
     3781 ccgaaggcca gggccgcgcg aaaccgaggc gcgggccaga agatcagcac gccgaggcca
     3841 agcacgggga acagcggcaa tgcgctccat ttgcaggcca cggacaggcc catgcagatg
     3901 cctgcgccaa tcggccagcg ctgccccggc cggtcgcgtc cccaaacaag caacgcaatg
     3961 gccgcgaaca ggaatgcgcc cgcgtagatt tccagcatcg cgatccgcgc ctggatgaac
     4021 agcatctggt tgagcagcgc caacagcgct gctgtcgctg cggtgcggac gtcgccgaac
     4081 agcttgagcg cgattgcgta gatcgacagc atcgtcgcca cgcctgccgc tgtgctcagc
     4141 gcacgccagc cgatagagtt gtccccgaag agcgcgatcg atagcccgat cagccatttg
     4201 gcgagcaaag gatgttcttc attggcgggc cggatcagcc agaaaatatc atgcgcggca
     4261 ggcacataat gcacctcgtc gaacatgagc ttggtcggct ggccaagatg gacggcgaac
     4321 agcagctcgg ccacgagcgc cagcagcaag gccatccgca gaggggtaaa gcgctccagc
     4381 cacccgacca aagatttcat attgccccca tgcggttgac gctttgccct cgtagcctgc
     4441 aaagcgccgg tgtgaagagg cgaacaggac aggaccgcag catcaccgcc aagtggcggc
     4501 cggcgacgct tgcggtgcgc ggcgggaccg cgcgatcgga atggggcgaa acgtcggaag
     4561 cgatcttcct gacgtcgggc tatgcctatg attgcgctgg cgacgcggcg gcgcgattcg
     4621 caggcgagca gcagggcatg acctatagcc ggctgcagaa cccgaccgtc gagatgctgg
     4681 agcatcgcat cgcgctgctc gaaggcgccg aggcggcccg gtgcatggcc agcggcatgg
     4741 ccgcgatgac ggcggccctg ctgtgccagc tttcggcggg cgatcatctg gtggcggcgc
     4801 ggacgatgtt cgggtcgtgc cgctggctga ccgatagcct gctccctcgt ttcgggattg
     4861 agaccacgat cgtcgatgga tcggattcgc cggcctggga gcgggcgatc cggccgaaca
     4921 ccaaagtctt cttcttcgaa actcccgcca atccgacgct cgagatcgtc gatcttgccg
     4981 cagtctgcgg catcgcgaag gcgcacggga tcgtgaccgt cgccgacaac gccttcgcca
     5041 cctctgcctt gcagcggccg atgagcttcg gcgccgatat cgtcgcctat tcggcgacca
     5101 agctgatgga cgggcagggg cgggtcctcg ccggcgcggt ctgcggcacg agtcagttcg
     5161 tcaacgaagt gctgctgccg ttcgttcgca acaccgggcc gaccttgtcg ccgttcaacg
     5221 cctgggtcgt gctgaagggc atcgaaacgc tcgacctgcg cgttcggcga cagagcgaga
     5281 atgcgctcgc ggttgcgcgc ttcctggaag gccgcgtgcc gcgcatcctc tatcccggcc
     5341 tcgcaagcca tccccagcac aatctcgccg cggcccagat ggcggcgggc ggcacgatcc
     5401 tgtccttctt cgtggcggac cgcgcccagg cgcatacgct cctcgacgcg ctggagctga
     5461 tcgacatctc caacaatatc ggcgattctc gctcgttgat gacgcaccct tcgtccacca
     5521 cacatagcgg tctcgccgcc gaggtgcgcg agtcgatggg gatcaccgag ggcatgttgc
     5581 ggctgaatat aggccttgaa gacccgcagg acctgatcga ggatctcgat cgggcgttgc
     5641 gcgcggcggg gctgtgaagg ctcttttccc ctatgcccaa accacccgcg gcgtgaccgt
     5701 gcgcgtctcg gtcagctacc tgcccgaaca gtccgatccg gacaaaggcc gatggttctg
     5761 ggcttatcat atccggatcg agaatgaggg acgaatggcc gtgcagttgc tcacgcggca
     5821 ctggatcatc gccgatgggc gaggcgcgcg gcacgaagtg cagggcgaag gcgtggtcgg
     5881 cgagcagccg gtgatcgagc cgggcgcgtc ctatgactat gtctccggct gtccgctctc
     5941 gacgccgacc ggccagatgc gaggcagcta tcgaatgatc ggcgaggacg ggtcgatgtt
     6001 cgacattgcg atcccgcgct ttccgctcgt cgcgccggcg gtccaggcat gaagcgaacg
     6061 catctgccca tgaacgggct gcgcgtgctc gacgctgccg cgcgccattt gtctttcact
     6121 cgcgcggccg acgagctggc cgtgaccccg gcggcggtcg ggcagcagat ccgcgcgctg
     6181 gaggatactt tgggcgtcgt cctgttccgg cgcaccgcgc ggggtctgga gctgacgccg
     6241 gaagccgagg cagggctgga ggcgcttcgc cagggctttc tgtgcttcga ggacgccgtg
     6301 cgcgcgatgc gcgccggcca gtcctcgaag gtgctgacga tcgcggcccc acgcgacctg
     6361 accgctcact ggctggctgc gcgcctcgcc gagatcgcga aggaagaccc ggagctgcgc
     6421 ttccacctgg tctccgccga tgaagcggtc gacttcaccg aagcgaatct cgacgtcgcg
     6481 atccggctga tggtcgacaa gggcgagcat gaaggcgtgc ggatcggcgg cacggtcttc
     6541 gcacgcgtgg cgcgccccgg cttcacggcc gagcattgga tcgcctggcc ggggcatgcc
     6601 agcaaggaag ctttggtctg ggtcgcggac gcggggctgg caatcgaggc ggccgttcag
     6661 gggcttggcc gggcgcttgt tcccgagctg ctggcgcgcc gggccctggc tgcgggcgcg
     6721 ctggaggaag tgggcgagcc ggtagaccag gggctcggct attggctgtt cgcgcccact
     6781 ccacaatggc ggcaggcgaa agtgaagaga ctcgtcgagc agctggccgt ctgaggcgtt
     6841 gcctgtatca ttatgaaacc gtgacattta cgttaaggac ttttaacaac catcccgatc
     6901 aggtataagt ctcggtccaa agaagagtga tcgccgctcg ggcatacact ctacaagggg
     6961 cgcatcggaa acgggggttc ggatgaggaa aatcgccttt tttgctgccg cggcgcttgc
     7021 tgcggttccc gccggcgcga cgacgcttat gccgagcgac tccggcctta ccttctcggc
     7081 catgccggcc ggcacgcagg gcatgcaaat cgcctatgac gagcaggcgc agacggcact
     7141 caccttcgct gcgatcttcc gctcggctgt gtatcgcaac gcgctgggca cgctcgactt
     7201 ctattatcag gttcagcgga ctgggcccgg gtcgttgaaa aaccaggaaa tcaaaatctt
     7261 caccgcttcg tccttcgccc gcttcgatgt cgatgc
//
LOCUS       DASQVK010000016         4725 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_317444,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000016 DASQVK010000000
VERSION     DASQVK010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4725
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317444"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..826)
                     /locus_tag="VE567_00385"
     CDS             complement(<1..826)
                     /locus_tag="VE567_00385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010336247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase (Re/Si-specific)
                     subunit beta"
                     /protein_id="HYZ47330.1"
                     /translation="MHEVAPVNPWVALAYLVAGVCFILALRGLSSPASSRRGNRFGMA
                     GMALAVGTTLVTHELASLPEIGAAILIGGAVGLVIARRIAMTAMPQLVAAFHSLVGLA
                     AVLVAAAAFLNPEAFHIAQVITPIAGPNIVNIFPVSRIEMSLGAAIGAITFSGSVIAF
                     LKLNGNMSGAPIMLPGRHLINLGTLAAILGLIAYFTTDQSGWVFWTVTALSFLIGFLL
                     IIPIGGADMPVVVSMLNSYSGWAAAGIGFTLGNTALIVTGALVGSSGAILSYIMCKG"
     gene            complement(851..1135)
                     /locus_tag="VE567_00390"
     CDS             complement(851..1135)
                     /locus_tag="VE567_00390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-translocating transhydrogenase family
                     protein"
                     /protein_id="HYZ47331.1"
                     /translation="MTFISILSIFVLAVFVGYYVVWSVTPALHTPLMAVTNAISSVIV
                     VGALIAAAAALGGSAAKWLGLVAVALASVNIFGGFAVTERMLAMYKKKER"
     gene            complement(1151..2272)
                     /locus_tag="VE567_00395"
     CDS             complement(1151..2272)
                     /locus_tag="VE567_00395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006950155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P) transhydrogenase subunit alpha"
                     /protein_id="HYZ47332.1"
                     /translation="MKIAVLKELSEGERRVSATPETVKKFTGLGAAVAVEVGAGLTAS
                     VADADYQAAGATIGPRAETLAGADIILGVQGPSPESLAGAKQGAWLVAGLNPFGERPR
                     VDAYAALGLEALAMEFMPRITRAQSMDILSSQSNLAGYKAVLDAAAEYGRVFPMMMTA
                     AGTVSAAKVFVMGVGVAGLQAIATARRLGAQVSATDVRSATKEQIQSLGAKPIFVENV
                     KGIEGEGAGGYATEMSEEYKQAQAELVSSHIAKQDIVITTALIPGRPAPRLISDAQVA
                     TMRAGSVIVDLAVEQGGNVEGAVAGEVVQRHGVKIVGHRNVPSRLAADASALFARNLF
                     NFLSAFWDKEKGAPVLDEEIGDAIRLTQNGKVVNQRLLG"
     gene            complement(2280..2405)
                     /locus_tag="VE567_00400"
     CDS             complement(2280..2405)
                     /locus_tag="VE567_00400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aa3-type cytochrome c oxidase subunit IV"
                     /protein_id="HYZ47333.1"
                     /translation="MASDGDIKTHEQTYSGFTALMKWGAAAAFLVGLIVVSIIAR"
     gene            2552..3973
                     /locus_tag="VE567_00405"
     CDS             2552..3973
                     /locus_tag="VE567_00405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014075900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HYZ47334.1"
                     /translation="MAKASAKLLLLIDDEPAQRRLVAAIAARAGWRTVFADDGAAGLE
                     VLRTEEGLALDAILIDQYGPGAETVDLIAALHERRPILPILLLTAHGSVEVAVDAMRA
                     GATDYLIKPIAPDRLLSALDSAAQSRANVGELRPLTEKMKAPLGFDEIVGASPQFRAA
                     LAIAAKAARARVPVLIEGESGVGKEVVAEAIHAASPRSKKSWVAVNCGAIPENLVESE
                     LFGHERGAFTGAFERKLGRFQEADGGTIFLDEVGELPLEAQVKLLRVLQSGEIQPLGA
                     RVTRDVDVRVVAATNKRLIEEVNAGRFREDLYYRLNVVQVTLPPLRQRPNDIPALARH
                     LLARIATQPGMRSVGITDDALSLLMSFAWPGNVRQLQNALFRAAVLCDGEALTAADFP
                     QIALQSCDAVLPTRAQVAVSGITLFEADGHIRNLEEIEADVIRLAIGHYRGRMTEVAR
                     RLGIGRSTLYRKLGELGIGDVAA"
     gene            complement(4050..>4725)
                     /gene="folP"
                     /locus_tag="VE567_00410"
     CDS             complement(4050..>4725)
                     /gene="folP"
                     /locus_tag="VE567_00410"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HYZ47335.1"
                     /translation="VGGESTRPGAEAVWEGDEITRVVPVIERLARAGVAVSIDTRKAA
                     VMEAALAAGAGLVNDVSALLYDERALEVVVRVGCPVILMHTGDPKDLHHRALGAEPLL
                     EVYDWLDARVAAVEAAGVPRARIIVDPGIGFGKTMADNLALLNGLALFQGLGCAVMLG
                     ASRKRMIGALSNEAPADRRLGGSVALALHGATQGAQLLRVHDVPETMQALRVWRGLRD
                     QALTAG"
BASE COUNT          819 a         1667 c         1494 g          745 t
ORIGIN      
        1 tccccttgca catgatgtag ctgaggatgg cgcccgagga gccgacgagc gcgcccgtga
       61 cgatgagcgc ggtgttgccg agggtgaagc cgatgccggc ggcggcccag cccgaatagg
      121 agttcagcat cgagacgacg accggcatgt ccgcgccgcc gatcgggatg atcagcagga
      181 agccgatcag gaacgatagc gccgtgacgg tccagaacac ccagcccgac tggtcggtcg
      241 tgaaataggc gatcaggccc aggatcgcgg cgagcgtgcc caggttgatg aggtgccggc
      301 ccggcagcat gatcggcgcg ccggacatgt tgccgttcag cttcaggaag gcgatgaccg
      361 agcccgagaa ggtgatcgcg ccgatcgccg cgcccagcga catttcgatc cggctgaccg
      421 ggaagatatt gacgatattg ggcccggcga tcggcgtgat cacctgggcg atgtgaaacg
      481 cctcggggtt caggaacgcc gccgccgcga ccaggaccgc cgccaggccg accagcgagt
      541 ggaaggcggc gaccagctgc ggcatcgcgg tcatcgcgat ccggcgggcg atcaccaggc
      601 ccacggcccc gccgatcagg atcgcggcgc cgatctcggg caggctcgcc agctcgtgcg
      661 tgacgagcgt cgttcccacc gccagcgcca tgccggccat gccgaaccgg ttgccgcgcc
      721 gcgacgatgc cgggctcgac aggccgcgca acgccaggat gaagcacacg cccgccacca
      781 gataggcgag cgcgacccag gggttgaccg gtgcgacttc gtgcattggc tcagcgcccc
      841 ccgagcggca tcaccgctcc ttcttcttgt acatggcgag catccgctcg gtgacggcga
      901 acccgccgaa aatgttgacg ctggccagcg ccaccgcgac caggcccagc cacttcgccg
      961 ccgacccgcc cagcgccgcc gccgctgcga tcagcgcgcc gacgacgatc accgacgaaa
     1021 tcgcattcgt caccgccatc agcggcgtat gcagcgctgg agtcaccgac cagacgacat
     1081 aatagccgac gaagacggcg agcacgaaaa tcgataggat ggagatgaag gtcattcgga
     1141 tctcccgtgc tcagccgagc aaacgctggt tcacgacttt gccattctgc gtcagccgga
     1201 tcgcatcgcc gatttcctcg tccagcaccg gtgcgccttt ttccttgtcc cagaaggcgc
     1261 tgaggaaatt gaacaggttg cgcgcgaaca gcgccgaggc gtctgccgcc aggcgcgacg
     1321 gcacgttcct gtgcccgacg atcttcacgc cgtgacgctg aaccacctcg cccgccactg
     1381 cgccttcgac attcccgccc tgctccactg ccaggtcgac gatgacgctg cccgcgcgca
     1441 tcgtcgcgac ctgcgcgtcg gagatcaggc gcggcgcggg gcggccgggg atcagcgcag
     1501 tggtgatgac gatgtcctgc ttggcgatat ggctggagac gagctcggcc tgggcctgct
     1561 tatactcctc cgacatctcg gtcgcgtagc cgcccgcgcc ctcgccctcg atgcctttca
     1621 cattctcgac gaaaatcggc ttggcgccca gggactggat ctgctccttg gtcgccgatc
     1681 gcacgtcggt cgcggagacc tgcgcgccca gccggcgcgc cgtcgcgatc gcctggaggc
     1741 cggcgactcc cacgcccatc acgaacacct tggcggctga aaccgtgccc gccgcagtca
     1801 tcatcatcgg aaatacccgg ccatattcgg ccgccgcgtc gagcacggcc ttgtagccgg
     1861 caaggttcga ctgcgaggac aatatgtcca tcgattgcgc gcgggtgatg cgcggcatga
     1921 actccatcgc cagcgcttcg aggccgagcg cggcataggc atccacccgc ggccgctcgc
     1981 cgaacggatt gaggccggcc accagccagg cgccctgctt cgctcccgcc aggctctccg
     2041 gcgacggccc ctgcacgccg agaatgatgt cggcgccggc aagcgtttcg gcacgcgggc
     2101 cgatcgtggc gcccgcggcc tgataatcgg catctgcgac cgaagccgtc agtcccgccc
     2161 cgacctcgac ggccacggcc gcgccgagcc ccgtgaattt cttgaccgtt tccggggtgg
     2221 cggagacgcg ccgttcgccc tcggaaagct ccttgaggac agcaatcttc acgtctgcgt
     2281 cagcgcgcga tgatggagac gacgatcagg ccgacgagga acgccgcggc ggcgccccat
     2341 ttcatcaggg ccgtgaaccc ggaataggtt tgttcgtgcg ttttgatatc gccgtcgctg
     2401 gccatgaagt ccctgcatcc cttgaagccc cgggcgccgt atctatcggc gagtttccac
     2461 tgtctcaagc gggaagtgtg atcagcttaa caccgctttt acgcacagcg ggataaggag
     2521 cagcctcaag gggtcgccgg agagacggaa aatggcgaaa gccagcgcca aattgctgct
     2581 gctgatcgat gacgagccgg cccaacgccg gctcgtcgcc gccattgccg cacgggccgg
     2641 ctggcgcacc gtgttcgccg acgacggcgc ggcggggttg gaagtcctgc gcaccgaaga
     2701 ggggctcgcg ctcgatgcga tcctgatcga tcaatatggg cccggtgccg aaacggtcga
     2761 cctgatcgcc gctttgcacg aacgccggcc gatcctgccg atccttctcc ttacggccca
     2821 tggctctgtc gaagtggcgg tggacgcgat gcgcgccggc gcgacggact atctgatcaa
     2881 gccgattgcg cccgaccggc tgctgagcgc gctcgacagc gccgcccaga gccgcgccaa
     2941 tgtgggcgag ctccggcccc tgaccgaaaa aatgaaggcc ccgctcggct ttgacgagat
     3001 tgtcggcgcg tcgccgcaat tccgcgctgc gctcgccatc gccgccaagg ccgcccgcgc
     3061 gcgcgtcccc gtgctcatcg aaggcgaaag cggcgtcggc aaggaagtcg tggccgaagc
     3121 gatccacgcc gcctccccgc gctccaagaa atcctgggtc gcggtcaatt gcggcgcgat
     3181 ccccgaaaat ctcgtcgaat ccgaattgtt cgggcatgag cgcggtgcct ttaccggcgc
     3241 attcgaacgc aagctcggcc gcttccagga agccgatggc ggcaccatct tccttgacga
     3301 ggtcggcgaa ctgccgctcg aagctcaggt caagctgctg cgtgtgctcc agtcgggcga
     3361 gatccagccg ctcggcgcgc gcgtcacgcg cgacgtcgat gtgcgcgtgg ttgccgcgac
     3421 caacaagcgg ctgatcgaag aagtgaatgc cggccgtttc cgagaggatc tctattaccg
     3481 gctgaacgtc gtccaggtga cgctgccgcc gctccggcag cgcccgaacg atattcccgc
     3541 gcttgcccgc cacttgctgg cccgcatcgc gacccagccc ggcatgcgca gcgtcggcat
     3601 caccgatgac gcgctgtcgc tgctgatgtc ctttgcctgg cccggcaatg tccgccagct
     3661 tcagaacgcg ctgttccgcg ccgccgtgct gtgcgacggc gaagcgctga ctgccgccga
     3721 tttccctcag atcgcgctgc agagctgcga tgccgtcctg ccgacgcgcg cgcaggtggc
     3781 cgtttccggc atcaccctgt tcgaagccga cggccatatc cgcaatctgg aagagatcga
     3841 agccgacgtg atccggctgg ccatcggcca ttatcgcggc cgaatgaccg aagtcgcccg
     3901 ccgcctcggc attggccgct cgacgctcta ccgcaagctc ggcgaactcg gcatcggcga
     3961 cgtcgcggca taaggccgat tagcccattc cgcattgttc gtttcgagcg aagtcgagaa
     4021 acagcgccac ctatacccag gcgaacgcgc taccccgcgg tcagcgcctg atcgcgcagc
     4081 ccccgccaga cgcgtagcgc ctgcatcgtc tccggcacgt catggacgcg caaaagctga
     4141 gcgccttgcg tagcgccgtg caacgccagc gccactgatc cgccgagccg cctgtcggcc
     4201 ggcgcttcgt tcgacagcgc accgatcatg cgcttgcggc tcgcccccag catcactgca
     4261 cagcccaggc cctggaacag cgccagtcca ttcagcaaag cgagattgtc ggccatcgtc
     4321 ttgccgaagc cgatgccggg atcgacgatg atccgcgcgc gcggcacgcc tgctgcctca
     4381 accgcggcga cgcgcgcgtc cagccagtca tagacctcca gcagcggctc ggcgccgagc
     4441 gcacggtggt gcaagtcctt gggatcgccc gtgtgcatca atattaccgg gcaaccgacg
     4501 cgaaccacca cttcgagcgc gcgctcgtcg taaagcaaag ccgagacgtc gttgaccaag
     4561 cctgcgcctg ccgccagcgc agcctccatg acagcggcct tgcgcgtgtc gatcgagact
     4621 gcaacgcccg ctcgggcgag ccgctcgatc accggcacga cgcgcgtgat ttcgtcgcct
     4681 tcccataccg cctccgcgcc gggccgtgtc gattcgccgc ccaca
//
LOCUS       DASQVK010000017         2642 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_285758,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000017 DASQVK010000000
VERSION     DASQVK010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2642
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285758"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..429
                     /locus_tag="VE567_00415"
     CDS             <1..429
                     /locus_tag="VE567_00415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EscU/YscU/HrcU family type III secretion system
                     export apparatus switch protein"
                     /protein_id="HYZ47336.1"
                     /translation="PESKSAQRRRMLEVFKRGVRKSVEEAHVVLTNPTHFAVALRYER
                     GQDEVPVVLAKGRGAKALAIRELAKDMEKPVLEYPALARAVYYTSREGQQIRDDLYVA
                     IATVLAFVFGVNLRAGGGQPNVIVPDSALFDENGVRIGNA"
     gene            472..1884
                     /gene="fliD"
                     /locus_tag="VE567_00420"
     CDS             472..1884
                     /gene="fliD"
                     /locus_tag="VE567_00420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010405401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HYZ47337.1"
                     /translation="MADSIAVTLGAGSGIDTKALVSSLVDAQFGPKTQALTTKKDTLA
                     AQISALSQLRSSLTGFSSALTTLVSGGTLSTQPVSADTSVLNVGLLPGASISGLSANV
                     EVKQLATAQVVTSGTVADKTAAFGKGTLTITLGTATYSGNTPTGFTAKSGATPVTVTI
                     GDAQNSLDGIASAINAAQAGVTATVVTDSAGARLSIKGQTGADQAFTIGVTQDPAAPG
                     LAALAFDTTTQAMSLTRKSDDAIVGLDGVDVRRAGNSISDLIAGVKLDLVKAAPGQPI
                     AINTSPPTAGLSQAVTDVVETYNQLIGIAKTDTDASSGVLRADAGVRTFMRLLRSLTS
                     TDLNPSGAAGEPRTLAELGVKTNRDGTLSLDSAALKQALSRNGPAVERMLTVGLGSAL
                     RQISLDVTGTGGALTASQAGYTREQKSVADRQAKIDTDSAAMRDRLTRQYASMDARVS
                     AYKSTLSFLQQQVAAWTKQG"
     gene            1881..2279
                     /gene="fliS"
                     /locus_tag="VE567_00425"
     CDS             1881..2279
                     /gene="fliS"
                     /locus_tag="VE567_00425"
                     /inference="COORDINATES: protein motif:HMM:NF014604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HYZ47338.1"
                     /translation="MSYASVLGRDPRETYRAVDVASRTGGASPHQLITILYEDLQREL
                     RLGALAIEKGDHPAKNERLTKAMALLFALEAGLDFDKGGNVAETLSRFYRGCREGVMR
                     ASIESDAALVRDIVASVTEIADSWKTIGRA"
     gene            complement(2295..>2642)
                     /locus_tag="VE567_00430"
     CDS             complement(2295..>2642)
                     /locus_tag="VE567_00430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD-dependent epimerase/dehydratase"
                     /protein_id="HYZ47339.1"
                     /translation="CYVDDLVEGLLRLARYDGAQPGPVNLGNPIELTVSELAERVIRL
                     TGADAELVYRALPVDDPRRRRPDIHRARQLLGWHPSVELEEGLQQTIAWFARAIERPQ
                     RRTEVPMTAVAAE"
BASE COUNT          466 a          884 c          898 g          394 t
ORIGIN      
        1 cccgagtcca aatcagcgca gcgccggcgc atgctcgaag ttttcaagcg cggcgtgcgc
       61 aagtcggtcg aagaggccca tgtcgtgctc accaacccga cgcacttcgc ggtcgcattg
      121 cgttacgagc gcggccagga cgaagtgccg gtggtgctcg ccaagggccg cggggccaag
      181 gcgctggcaa tccgcgagct ggcgaaggac atggaaaagc cggtgctcga atatccggcg
      241 ctcgcccgcg ccgtctatta caccagccgc gaaggccagc agatccgcga cgacctctac
      301 gtggcgatcg cgaccgtgct cgccttcgtc ttcggcgtga acctgcgcgc gggcggcggc
      361 cagccgaatg tgatcgttcc ggacagtgcg ttgttcgatg aaaacggggt gcgcatcggc
      421 aacgcctaaa gctccggctc gaacggccga ttatgggtgc gggagataca gatggccgac
      481 tcgattgcag taacgctggg cgcgggctcc ggtatcgaca ccaaggcgtt ggtctcctcg
      541 ctggtcgacg cgcaattcgg gcccaagacc caggcgctga cgaccaagaa ggacacgctc
      601 gccgcgcaaa tctccgcgct gtcgcagctg cgctccagcc tgaccggctt ttcgagcgca
      661 ctcacgactt tggtatcggg cggcacgctg tcgacccagc ccgtcagcgc cgacacgtcc
      721 gtgctgaacg tcggcctgct tccgggcgcg agcatttccg ggctgtcggc gaacgtcgag
      781 gtcaagcagc tcgcaaccgc gcaggtggtc acctccggca cggtcgccga caagacggcg
      841 gcgttcggca agggcacgct gacgatcacg ctcggcaccg ccacctatag cggcaatacg
      901 ccgacaggct tcacggccaa gtcaggcgcg acgccggtga cggtcacgat cggcgacgcg
      961 cagaacagcc tggacggcat cgccagcgcg atcaacgcgg cccaggccgg cgtgaccgcg
     1021 accgtcgtca ccgattcggc cggcgcccgg ctttcgatca agggtcagac gggcgccgac
     1081 caggctttca cgatcggcgt cacgcaagat ccggccgcac cgggcctggc ggcgctggcc
     1141 ttcgacacca cgacgcaggc gatgtcgctt acccgcaagt ccgacgatgc gatcgtcggg
     1201 ctggatggcg tcgacgtgcg ccgcgccggg aacagcatca gcgatttgat cgcaggcgtg
     1261 aagctcgacc tcgtcaaagc cgcgccgggc cagccgatcg cgatcaacac ctcgccgcct
     1321 actgccggcc tgtcgcaggc agtgacggac gtggtcgaga cctacaacca gctgatcggc
     1381 atcgcgaaga ccgacacgga cgcgagttcg ggcgtgctgc gcgcggatgc cggcgtgcgg
     1441 accttcatgc ggctgttgcg ttcgctgacc agcaccgatc tcaatcccag cggcgcggcg
     1501 ggcgagccga ggacgctggc cgagcttggc gtgaagacca atcgcgacgg cacgctctcg
     1561 ctcgattcgg cagcgctgaa gcaggccctg tccaggaacg gccctgcggt cgagcggatg
     1621 ctgaccgtcg ggctgggttc ggcgctgcgg cagatctcgc tggacgtgac ggggaccggc
     1681 ggtgcgctga ccgccagcca ggcgggctat acccgcgagc agaaatccgt cgcggaccgg
     1741 caggccaaga tcgacaccga tagcgcggcg atgcgcgatc gcctgacccg ccaatatgcg
     1801 agcatggatg cccgcgtctc cgcctataaa tcgacattga gcttccttca gcagcaggtc
     1861 gcagcctgga cgaagcaggg atgagctacg cttcggtttt gggccgcgat ccgcgcgaga
     1921 cctatcgcgc agtcgatgtc gccagccgca ccggcggcgc ctcgcctcat cagctcatca
     1981 cgatcctgta cgaggatctg cagcgcgagc tgcggctcgg cgcgctggcg atcgaaaagg
     2041 gcgatcatcc ggccaagaat gagcggctga ccaaggcgat ggcgctgctc ttcgcgctgg
     2101 aagcgggcct tgatttcgac aagggcggca atgtggccga aacgctgtcc cgcttctatc
     2161 gcggctgccg cgaaggcgtg atgcgcgcaa gcatcgagag cgacgccgcg ctggtccgcg
     2221 acatcgtcgc cagcgtcacc gaaatcgccg acagctggaa gacgatcggg cgcgcctaaa
     2281 acggaagcgg cgcttcattc cgcggccacg gcagtcatcg gcacctccgt ccgccgctgc
     2341 gggcgttcga tcgcgcgggc gaaccaggcg atggtttgct gcagcccttc ctccagctcc
     2401 acgctcgggt gccagccgag cagctgcctg gcgcggtgga tgtccgggcg gcggcggcgc
     2461 ggatcgtcga ccggcagagc ccgatagacc agctcggcat cggcgccggt caagcggatc
     2521 acgcgctcgg cgagttcgga aacggtcagc tcgatcgggt tgccgagatt gacgggaccg
     2581 ggctgtgcgc cgtcgtaacg ggcgaggcgg agcagcccct cgaccagatc gtcgacatag
     2641 ca
//
LOCUS       DASQVK010000018         3340 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_222556,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000018 DASQVK010000000
VERSION     DASQVK010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3340
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222556"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(101..979)
                     /locus_tag="VE567_00435"
     CDS             complement(101..979)
                     /locus_tag="VE567_00435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47340.1"
                     /translation="MRHLLVCMLVAAVPLAPATAAKPAAAAKAQAAYQDLLAADRAFS
                     NEGRGKPLVEALAAMMDRDAVLVTGGVSDLTRGPEAIRARLAAKPENLTATAEWAPVG
                     GGVSADGTHGFTYGAMTVRPQKGAPQPLKYLAYWVKRPAGWRVFGYKRIGAKEGVALA
                     AVKPIIGRGPKRPDDAGATLKASERTFSDEAQKIGLRAAFQKWGRPDSINLGAADAIA
                     VGAQAIGEGVGGPEPTSPVTWAADQVMVAPSGDLGLSYGLLHLNAPKQGRPGTIPFFT
                     VWARPAPGDPWRYVAE"
     gene            complement(1069..2634)
                     /gene="gcvPB"
                     /locus_tag="VE567_00440"
     CDS             complement(1069..2634)
                     /gene="gcvPB"
                     /locus_tag="VE567_00440"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010336294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006546 - glycine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPB"
                     /protein_id="HYZ47341.1"
                     /translation="MSMNRQGRVSRPEAETQAGAATFTGNRALMLEEPLIFEIGDEQT
                     TGVDLPAPAGSKSRLGGLERNRPIGLPGLSEPEAVRHYTRLSRQNYAIDLGLFPLGSC
                     TMKHNPRLNEKVARLPGFADIHPLAPVDSVQGALALIDLVADWLKKLTGMPAVAMSPK
                     AGAHGELCGLLAIRSALEARGDARSVVLVPESAHGTNPATAAFAGYAVENIPATPAGR
                     VDFDALRARLGPDVAAVMITNPNTCGLFERDMKRIADAVHAAGAFVYCDGANFNAIVG
                     RVRPGDLGVDAMHINLHKTFSTPHGGGGPGSGPVVFSAALAPFAPLPFVEKQGEHYAL
                     VEEETAQEHHARSFGRMVAFHGQMGMFTRAAAYMLSHGADGLRQVSEDAVLNANYILR
                     SLEDILDAPFGMSGPCMHEALFSDEGMAEGFTTLDIAKGLIDEGYHPMTMYFPLVVHG
                     AMLVEPTETESKAALDQFIGALRSVAARAKNGDPALKGAPHFAPRRRLDETLAARKPV
                     LVWKDPELSEAAE"
     gene            complement(2631..>3340)
                     /locus_tag="VE567_00445"
     CDS             complement(2631..>3340)
                     /locus_tag="VE567_00445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010403766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycine dehydrogenase"
                     /protein_id="HYZ47342.1"
                     /translation="SLSEKIQGLVSGFSDGAATPSAVAPSPAALGLLKPPGEMGADIV
                     VGEGQSLGVGLQFGGPYVGLFACKEKFVRQMPGRLCGETVDAEGKRGFVLTLSTREQH
                     IRREKATSNICTNSGLCALAFSIHMTLLGEKGLRGLAELNHAGAAAAAERLARVPGVE
                     VVNDGFFNEFTLKLSSEARPLVRRLAERDILAGVSLGRLYPGVEMLANGLVVAVTETT
                     TPEDVETLAAALEEELA"
BASE COUNT          505 a         1155 c         1146 g          534 t
ORIGIN      
        1 cgcaaggatc ggctcgcgat tgcgcgcggt ggcgggagcg tggcgggcgg cggtcatccg
       61 ccccctatac cgccctcatc cattcagcgc gggagttttc tcactccgcg acgtaccgcc
      121 acgggtcgcc cggcgcgggt ctcgcccaga cggtgaagaa ggggattgtg cctgggcggc
      181 cttgcttcgg cgcattgaga tggagcagtc catagctcag ccccagatcg cccgaggggg
      241 cgaccatgac ctggtccgcc gcccaggtga ccgggctggt cggttcgggg ccgcccacgc
      301 cttcgccgat cgcctgcgcg cccaccgcaa tcgcgtccgc cgcgccgaga ttgatcgagt
      361 cgggccggcc ccatttctgg aacgctgcgc ggaggccgat cttctgcgct tcgtccgaga
      421 aagtgcgttc ggatgccttc agcgtcgcgc cggcatcgtc ggggcgcttc ggcccccgcc
      481 cgatgatcgg cttgaccgcg gcgagcgcga cgccctcctt cgcgccgatc cgcttatagc
      541 cgaacacccg ccaacccgcg ggccgcttca cccaataagc gagatatttg agcggttgcg
      601 gcgcaccttt ctgcgggcga accgtcatgg cgccataagt gaagccgtgc gttccgtccg
      661 ccgagacgcc gcccccgacc ggagcccatt cggcggtcgc ggtcaggttc tcgggcttgg
      721 cagcgagccg cgcgcggatc gcttcggggc cgcgagtcag gtcggacacg ccgcccgtaa
      781 ccagcactgc atcccggtcc atcattgccg cgagtgcctc gaccagcggc ttgccccgcc
      841 cctcgtttga aaaggcgcga tcggcggcga gcagatcctg ataggcggcc tgagcctttg
      901 ccgctgcagc cggtttggcg gcagtcgcag gcgcaagcgg cacggccgcc accaacatac
      961 agaccagcaa atggcgcatc gatcctcccc tgttcgttcg agcgggtgcc cgacgcgcag
     1021 gggattgctc aatccggctt ctatcggcgg cctgcgggct tcgacgaact actccgccgc
     1081 ctcggacagc tcggggtcct tccacaccag caccggcttg cgggccgcca gcgtctcgtc
     1141 gagccgacgg cggggcgcga agtgcggcgc gcccttgagc gctgggtcgc cattcttcgc
     1201 gcgagccgcg accgagcgga gcgcgccgat gaactggtcg agcgccgcct tgctctcggt
     1261 ctcggtcggc tcgaccagca tcgccccgtg gacaacgagc gggaaataca tcgtcatcgg
     1321 gtgatagcct tcgtcgatca gccccttggc gatgtcgagc gtggtgaagc cttccgccat
     1381 gccttcgtcg gagaagagcg cctcgtgcat gcaggggccg ctcatcccga atggcgcgtc
     1441 gagaatgtcc tcgaggctgc gcaggatgta attggcgttg agcacggcgt cttcgctcac
     1501 ctgccgcagc ccgtccgcgc cgtggctcag catgtacgcg gccgcgcggg tgaacatgcc
     1561 catctggccg tggaacgcga ccatgcggcc gaagctgcgc gcatgatgct cctgcgcggt
     1621 ctcctcctcg accagggcat aatgctcgcc ctgtttctca acgaacggca gcggcgcgaa
     1681 cggcgcgagc gcggccgaaa agactacggg gccggagccc ggcccgccgc cgccatgcgg
     1741 ggtcgagaag gtcttgtgca ggttgatgtg catcgcatcg acgccgagat cgcccggacg
     1801 cacccggccg acgatcgcgt tgaagttcgc gccgtcgcaa tagacgaacg cgccggccgc
     1861 gtgcaccgca tcggcgatac gcttcatgtc acgctcgaac aggccgcagg tgttcgggtt
     1921 ggtgatcatc actgccgcga catcgggacc gagccgggcg cgcagcgcgt cgaaatcgac
     1981 gcggccggcg ggcgtcgccg ggatattctc gaccgcatag ccggcaaagg cggcggtcgc
     2041 cgggttggtg ccgtgcgcgc tctccggcac cagcaccacc gagcgagcgt cgccgcgggc
     2101 ttcgagcgcc gagcggatcg cgagcagccc gcacagctcg ccatgcgcgc cggccttcgg
     2161 gctcatcgcg acggcgggca tgccagtcag ctttttcagc caatcggcga caaggtcgat
     2221 cagcgcgagc gcgccctgca ccgagtcgac gggcgcaagc ggatgaatgt cggcaaagcc
     2281 tggcagccgc gcgactttct cgttcagccg cggattgtgc ttcatcgtgc acgagccgag
     2341 cgggaagagg ccaaggtcga tcgcgtaatt ctggcggctg aggcgggtgt aatggcgcac
     2401 ggcctcaggt tcggagaggc cgggcaagcc gatcgggcgg ttgcgctcca gcccgcccaa
     2461 gcgggatttc gacccagccg gggccggcag atcgacgccc gtcgtctgct cgtcgccgat
     2521 ctcgaagatc agcggctctt cgagcatcag cgcgcggttg ccggtgaagg tggcggcgcc
     2581 tgcctgggtt tcggcttccg ggcgggagac gcggccctga cggttcatgc tcatgcgagt
     2641 tcctcctcca gcgcggcggc aagcgtctcg acatcctccg gcgtggtggt ttcggtgacg
     2701 gcgacgacga ggccgttcgc cagcatctcg acgcccggat agaggcggcc aagcgacacg
     2761 ccggccagga tgtcgcgctc ggccaggcgg cggaccagcg gccgcgcttc gctggagagc
     2821 ttcagcgtga actcgttgaa gaagccgtca ttgacgactt ccaccccggg gactcgcgcc
     2881 agccgctcgg ccgccgcggc cgcgcccgca tggttcagct cggcgagccc gcgcaggccc
     2941 ttttcgccga gcagggtcat gtgaatcgag aaagcgagcg cgcacagccc ggagttggtg
     3001 cagatgttcg acgtcgcctt ttcgcggcgg atatgctgct cgcgcgtgga aagcgtcagc
     3061 acgaatccgc gcttgccttc ggcgtccacc gtctcgccgc agagccggcc gggcatctgg
     3121 cggacgaatt tttccttgca ggcgaacagg cccacatagg ggccgccgaa ctgcaggccg
     3181 acgcccagcg attggccttc gccgacgacg atgtccgcgc ccatttcgcc ggggggcttc
     3241 agcaggccga gcgcggccgg agacggcgcg acggctgacg gcgtggccgc gccgtccgag
     3301 aacccgctga cgagcccctg gatcttttcg gacaagctcc
//
LOCUS       DASQVK010000019         2202 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_348981,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000019 DASQVK010000000
VERSION     DASQVK010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2202
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_348981"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..655)
                     /gene="thiE"
                     /locus_tag="VE567_00450"
     CDS             complement(<1..655)
                     /gene="thiE"
                     /locus_tag="VE567_00450"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020818902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HYZ47343.1"
                     /translation="MHNESFAELFAERAERGPCQLYLISPLEVGGDFPERLARALDAG
                     PVAAFQFRVKDVDQHQAAALAEPLLRICQERDVAFIVNDSIALAKRLGADGVHLGQDD
                     GDPREARRVLGPQAQIGVTCHDSRHLAMEAGEAGADYVAFGSFYPTTTKEVRHRPDPS
                     ILGWWSTVFELPCVAIGGITAENCAPLVAAGANFLAVVSAVWSHPGGPAAGVRAMNRA
                     "
     gene            659..1483
                     /locus_tag="VE567_00455"
     CDS             659..1483
                     /locus_tag="VE567_00455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HYZ47344.1"
                     /translation="MIRIGCSGWNYRHWRGVFYPEGLPVKRWFAHYAHHFDTVEVNAS
                     FYRLPEASIFAKWRDQAPPGFCYAIKAPRFITHMRKLKDCEESMERFLDRARNLGHAL
                     GPILYQLPPKWRFDAERLQGFLALLPRDLTHVFEFREASWFADEALALLEQAGAGFCV
                     HDMPGLPVPRTATGRAAYVRFHGSSGKYWGRYSEEALAGWADWMGTQAAQGRTAWAFF
                     NNDIHGHAIEDATALRRLVECQARAIRGPSSNHARVLQQNGGADRDQGQAAQAFDP"
     gene            complement(1400..1963)
                     /locus_tag="VE567_00460"
     CDS             complement(1400..1963)
                     /locus_tag="VE567_00460"
                     /inference="COORDINATES: protein motif:HMM:NF014689.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HYZ47345.1"
                     /translation="MSPFAILALALSMSADACAAAVCRGAAHRPTLPQALRAGLVFGS
                     IETLTPLAGWAVGILAAGFVEAVDHWIAFTLLAIVGGKMLLESFGERDCDTEPAKGGL
                     LVLVMTAVGTSIDAAAVGVSLALLHVHIVVIALAIGTATFVMSSLGMILGRSLGVRFG
                     SWIERLGGLTLIAIGTAILLQHTGVIA"
     regulatory      complement(2039..2125)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00080"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="yybP-ykoY riboswitch is a manganese riboswitch that
                     directly binds Mn; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="manganese"
                     /db_xref="RFAM:RF00080"
BASE COUNT          390 a          763 c          712 g          337 t
ORIGIN      
        1 tggcgcggtt catggcgcgc acgccggcgg ccgggccccc ggggtgcgac cagacggcgc
       61 tgaccacggc gaggaagttg gcgccggcgg cgaccagcgg ggcgcagttc tccgccgtga
      121 tgccgccgat cgcgacacag ggcagctcga aaacggtcga ccaccagccg aggatcgacg
      181 ggtcgggccg gtggcggacc tccttggtcg tggtcggata gaagctgccg aacgcgacat
      241 agtcggcgcc cgcctcgcct gcctccatcg ccagatgccg gctgtcgtga catgtgacgc
      301 cgatctgcgc ctgcgggccg agcacgcgcc gcgcctcgcg cgggtcgcca tcatcctggc
      361 ccagatgcac gccgtcggcc ccgagcctct tcgcaagcgc gatcgagtcg ttgacgatga
      421 aggccacgtc ccgctcctgg cagatccgca gcagcggctc ggcgagcgcc gctgcctgat
      481 gctggtcgac gtccttcacg cggaactgga acgccgcgac cggcccggcg tcgagcgccc
      541 gcgcgagccg ctccgggaaa tcgccgccca cctccagcgg cgaaatcaaa tagagctggc
      601 acggaccgcg ttcggcacgc tccgcgaaca gttcggcgaa cgactcgtta tgcatcgcat
      661 gatccgtatc ggttgctccg gctggaacta ccggcattgg cgcggggtgt tctatccgga
      721 gggcctgccc gtcaagcgct ggttcgccca ttatgcgcac cacttcgaca ccgtggaggt
      781 gaatgcgagc ttctatcggc tgcctgaagc gagcattttc gccaaatggc gcgaccaggc
      841 tccgccgggc ttttgctacg cgatcaaggc gccgcgcttc atcacgcata tgcgcaagct
      901 caaggattgc gaggaaagca tggagcgatt cctcgaccgg gcccgcaacc tcggccacgc
      961 gctcgggccg atcctctacc agctcccgcc caaatggcgt ttcgacgccg agcggttgca
     1021 ggggtttctc gccctgctcc cgcgcgatct cacccatgtc ttcgagtttc gcgaggcgag
     1081 ctggttcgcc gacgaagccc tcgcgctgct ggagcaggcg ggcgccggct tttgcgtcca
     1141 cgacatgccc ggcctccccg tcccgcgcac cgcgaccggc cgcgccgcct atgttcgctt
     1201 ccacggaagt agcggcaaat attggggccg ctactcggaa gaggcgctcg ctggctgggc
     1261 cgactggatg ggcacgcagg cagcgcaagg ccgcaccgcc tgggccttct tcaacaatga
     1321 cattcacggc catgccatcg aggacgcgac ggcgttgagg cggcttgtgg aatgtcaagc
     1381 cagggcaatt cggggaccat caagcaatca cgcccgtgtg ctgcagcaaa atggcggtgc
     1441 cgatcgcgat caaggtcaag ccgcccaagc gttcgatcca tgatccgaac cggaccccaa
     1501 ggctgcggcc gaggatcatg ccaagcgagc tcatcacgaa cgtcgctgtg ccgatcgcca
     1561 gagctatcac cacgatgtgc acgtgcagca aggccaggct cacgcccacc gcagctgcgt
     1621 caatgctggt ccccacggcc gtcattacga gaacgaggag gccgcccttg gcaggttcgg
     1681 tgtcgcaatc ccgttcgccg aacgactcca ggagcatctt gccgccgaca atggcgagta
     1741 gcgtgaaggc gatccagtga tcgacagcct cgacgaagcc ggccgccagt attccaaccg
     1801 cccagcctgc aagcggcgtc agcgtctcga tgctgccgaa gaccagaccg gcacgaaggg
     1861 cctgcggaag cgtcggccga tgcgcggccc cgcgacagac ggcagcagcg caagcatcgg
     1921 ccgacatgct gagggcgagc gccaggatcg cgaaaggaga caaaaaccta ctccgccgga
     1981 caatgagaca gcgcgtccgg tccggccggc tcggccccgg atcgcgctgg tctcgctagg
     2041 cgggctggcc cgctggtcac gccatgcgcc gcggcgcaag cttgttgacg tgaccccggc
     2101 attcgagccg gaagctactc cccaacggcg gccgccttac ggggcaccag ccatgcaggc
     2161 aagacgattg ctcgctcacc agagtccgtt ttcgtgcctt aa
//
LOCUS       DASQVK010000020         2923 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_127642,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000020 DASQVK010000000
VERSION     DASQVK010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2923)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2923)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2923
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127642"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            185..2764
                     /gene="clpB"
                     /locus_tag="VE567_00465"
     CDS             185..2764
                     /gene="clpB"
                     /locus_tag="VE567_00465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013041480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HYZ47346.1"
                     /translation="MNLEKFTDRAKGFLQAAQTVAIRMSHQRISPEHLLKALLEDSEG
                     MASGLIRAAGGDPAIALKETDAALAKVPAVSGSGAQQTPGLDNDAVRVLDQAEQVATR
                     AGDSYVTVERLLLALALASTTAAGKALAKANVRPEGLNDAINKLRGGRSADTASAEDR
                     YDALKKFARDLTEAAREGKLDPVIGRDEEIRRTIQVLARRTKNNPVLIGEPGTGKTAI
                     VEGLALRIANGDVPDSLRDKQLMALDMGALIAGAKYRGEFEERLKGVIDEVRQGEGDI
                     ILFIDEMHTLIGAGKAEGAMDAGNLLKPALARGELHCIGATTLDEYRKYVEKDAALQR
                     RFQPVYVDEPSVEDTISILRGLKEKYELHHGVRITDGAIVAAATLSNRYITDRFLPDK
                     AIDLMDEAASRLQMEIKSKPEEIENLDRRIMQLKIEREALKKETDAASRERLSNLDAE
                     LANLEQQSAELTQRWQAEKEKIQSEAKLKEQLDQARLQLEQAQRQGDLGRAGELSYGI
                     IPALEKQLAEAQSATAGAMLREEVTADDIAGVVSRWTGIPVDKMLEGEREKLLQMEDV
                     LRKRVIGQEEAVRAVSTAVRRARAGLQDPNRPLGSFLFLGPTGVGKTELTKALAEFLF
                     DDASAMVRIDMSEFMEKHSVARLIGAPPGYVGYEEGGVLTEAVRRRPYQVVLFDEVEK
                     AHNDVFNVLLQVLDDGRLTDGQGRTVDFSNTLIILTSNLGSQFLSQVADDQDVKSVEP
                     QVMEIVRGHFRPEFLNRLDEIILFHRLGQEHMGPIVDIQVARVQRLLADRKVTLELTD
                     AARAWLGRVGYDPVYGARPLKRAVQKYLQDPLAELILSGEIRDGATVRVDEGDGRLEL
                     AVA"
BASE COUNT          585 a          920 c          981 g          437 t
ORIGIN      
        1 cgcatcactc gcgccatggc cgatgccgac gaagcgccgc gctggtatca gggcgacttc
       61 ttcggcaatg ccttcgcgcc gcgagcggcg aaggcggaga aataaccctc aagaaacgtt
      121 catcgcccgg acttgtgttg cacaaaagcc acatcatatc cgcctcacgc attgaggtga
      181 cagcatgaat ctcgaaaaat ttaccgatcg ggcgaagggc tttttacagg cggcgcagac
      241 ggttgcgatc cgcatgtcgc accagcgcat cagccctgag catttgctga aggcgctgct
      301 ggaagacagc gaaggcatgg cgtccggcct gatccgcgcg gcgggcggcg atccggcgat
      361 cgcgctcaag gaaaccgacg ccgctctggc caaagtgccc gcggtgagcg ggtccggcgc
      421 gcagcagacg cctggcctcg acaatgacgc ggtgcgcgtg ctcgaccagg ccgagcaagt
      481 cgcgacccgc gcgggcgatt cctatgtaac cgtcgagcgg ctgttgctgg cgcttgcgct
      541 ggcgagcacg actgccgccg gcaaggccct cgccaaggcg aatgtgcggc ccgaaggact
      601 caacgacgcg atcaacaagc tgcgcggcgg acgctctgcc gacacggctt ccgccgaaga
      661 ccgctacgac gcgctgaaga aattcgcgcg cgatctcacc gaggcggcgc gcgagggcaa
      721 gctcgatccg gtcatcggac gcgacgagga aatccggcgc acgatccagg tgctggcgcg
      781 acgcaccaag aacaatccgg tgctgatcgg cgaaccgggc accggcaaga ccgccattgt
      841 cgagggcctc gcgctccgca tcgccaatgg cgacgtgccc gactccttgc gcgacaagca
      901 gctgatggcg ctcgacatgg gcgcgctgat cgcgggcgcc aaatatcgcg gcgagttcga
      961 ggagcggctg aagggcgtca tcgacgaagt ccgccagggt gaaggcgaca tcatcctgtt
     1021 catcgacgag atgcacacgc ttatcggcgc cggcaaggcc gaaggcgcga tggacgcggg
     1081 caatctgctg aagccggcgc ttgcccgcgg cgaactccat tgcatcggtg cgaccacgct
     1141 cgacgaatat cgcaaatatg tggagaagga cgcagcgctg cagcggcgct tccagcccgt
     1201 ctatgtcgac gagccgagcg tcgaggacac gatctcgatc ctgcgcggcc tcaaggaaaa
     1261 atacgagctg caccacggcg tgcggatcac cgatggcgcg atcgtcgccg cggcgacatt
     1321 gtccaaccgc tacatcaccg accgcttcct gcccgacaag gcgatcgacc tgatggacga
     1381 ggcggcgagc cggctgcaga tggagatcaa gtcgaagccg gaggagatcg agaatctcga
     1441 ccggcgcatc atgcagctca agatcgagcg cgaggcgctg aagaaggaaa ccgacgcggc
     1501 ctcgcgcgaa cggctgtcga acctcgacgc cgagcttgcg aacctggagc agcaatctgc
     1561 cgaactcacc cagcgctggc aggcggagaa ggagaagatc cagtccgaag ccaagctgaa
     1621 ggagcagctc gaccaggcac ggctccagct cgaacaggcg cagcgccagg gtgacctcgg
     1681 gcgcgcgggc gagctcagct acggcatcat cccggcgctc gaaaagcaac tcgccgaagc
     1741 gcagtccgcc acggccgggg cgatgctgcg cgaggaagta accgccgacg acatcgccgg
     1801 cgtcgtatcg cgctggaccg gcatcccggt cgacaagatg ctcgaaggcg agcgcgaaaa
     1861 gctgctccaa atggaagacg tgctgagaaa gcgcgtcatc ggccaggaag aggccgtgcg
     1921 tgcggtgtcg accgccgtcc gccgggcccg cgcgggcctg caggacccga accggccgct
     1981 gggctcgttc ctgttcttgg ggcccacggg cgttggcaag acggagctta ccaaggcgct
     2041 cgccgagttc ctgttcgacg atgcctcggc gatggtgcgg atcgacatgt ccgagttcat
     2101 ggaaaagcac tcggtcgcgc gcctgatcgg cgccccaccg ggctatgtcg gctatgagga
     2161 aggcggcgtg ctcaccgaag cggtgcggcg ccggccctat caggtggtgc tgttcgacga
     2221 agtcgagaaa gcgcacaacg atgtgttcaa cgtgctgctt caggtgctcg acgacgggcg
     2281 gctgaccgac ggccagggcc gcacggtcga cttctccaac acgctgatca ttctcacctc
     2341 gaacctgggc agccagttcc tgagccaggt ggccgacgat caggacgtga agtcggtcga
     2401 gccgcaggtg atggaaatcg tacgcgggca tttccggccc gaattcctga accggctgga
     2461 cgagatcatc ctgttccacc ggctgggtca ggaacatatg ggcccgatcg tcgacattca
     2521 ggtcgcgcgc gtccagcggc tgctggccga tcgaaaggtg acgctggagc tgacggacgc
     2581 cgcgcgcgcc tggctcggcc gcgtcggcta cgaccccgtc tatggcgcca ggcccttgaa
     2641 gcgcgcggtg cagaaatatc tgcaggatcc gctcgccgaa ctcatcctgt cgggcgaaat
     2701 ccgtgacggc gcgacggtgc gcgtggacga aggcgatgga cggctggagt tggctgttgc
     2761 ttagacacgc tctctaaatc gtcctgccgg acttgatccc gcatccatga acaccgatgg
     2821 cgatcttatg gtgatgcgcg gtgttcatgg atgccggatc aagtccgggg cgacggaaga
     2881 ggagacgcgt tgaacaggcc gaccgcccgg gacgtggctc atg
//
LOCUS       DASQVK010000021         3426 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_96340, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000021 DASQVK010000000
VERSION     DASQVK010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3426)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3426)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3426
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96340"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..417)
                     /locus_tag="VE567_00470"
     CDS             complement(<1..417)
                     /locus_tag="VE567_00470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HYZ47347.1"
                     /translation="MKTIMALAPLALLAACSGGAAEEGEPPAPTATVRTATATLGATS
                     DTVSAYGLAEAGPGGQHALTVQTEARLAEIIAPTGTAVRAGQVVAVLRPTPASQLDVA
                     KANSDAAAANAALARAQRLRADGLVSDADVETARAAA"
     gene            complement(414..1763)
                     /locus_tag="VE567_00475"
     CDS             complement(414..1763)
                     /locus_tag="VE567_00475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007013337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HYZ47348.1"
                     /translation="MRRSHRLWPLVAAGALAGCQSYSASPLRAPGDVLAPPDIAALSA
                     DAQTIQRPFLAPQDIDLSQPLTPNALAIIAVIENPDLKALRAKNGVTDAQAFAARLLP
                     DPTAQGSFDKRISGPDPFDGFGGQIGFDLAQLRTAKVVRESNDAKKRQVRLDLAWAEW
                     QTAGQARLQGVRVLALEAQLEIARISAATAAQQLAAAIHAAGRGDLPGSEVDTRRQAA
                     LDSADKVRVAERDLATARGELNKQLGLPPETVLRLAPPPAPEAPPSTSVLLTQALDRR
                     LDLAALRAGYDSAEADVHKAILDQFPSLGLTLAGARDTANNYTAGPQVGFTLPLWNRN
                     RGGIAVAKATREQLKTEYEARLAQTRADIDAAVVGLATVRRQRSALAAELPALERYAN
                     ATARAAKRGDLPPATAIAAQQVVRDRKLTLLQLDQQAAEQTIALELLSGGLSEGWTK"
     gene            complement(1829..2638)
                     /locus_tag="VE567_00480"
     CDS             complement(1829..2638)
                     /locus_tag="VE567_00480"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYZ47349.1"
                     /translation="MFAPAPPARRLPRSVGGHVFGSDVEGYRVARIGYPTELYAAIRA
                     RCGGAPDTIEIGPGTGLATAELLTNLQPARLVAVEPDPALADHLHRAIVDPRLRIVAE
                     PFASAYVEGRFDLACAAASFHWLDPDAAFARLRMVLRPGATLALWWNVYRQVGVGDEF
                     ADAVTPLLDDIDLPPSEGSDGHYSLNADFHREAVTGAGFLDFAAMLFRRDRILDAEGV
                     RALYASYSYVRALPDPRREALLEEIVSLAKTEFGGTVRNVVLTPLYLATAP"
     gene            complement(2642..3163)
                     /locus_tag="VE567_00485"
     CDS             complement(2642..3163)
                     /locus_tag="VE567_00485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47350.1"
                     /translation="MLKRLIIPAALVAAMGSTGVVAADAPVKNWTPPSYSIYAQKLSD
                     ETMKANPDLLSVTFHGVPPGMSNVYTMFAGSYPDRIGNPDDPDDIDVTKKGITIVDPR
                     WHRPNDPAPKFVVLMPLRDAHMENIGLVVYAFKVPVESNAGERKYYTRALDLRDALAR
                     KIPSYEALFQRAN"
     gene            3193..>3426
                     /locus_tag="VE567_00490"
     CDS             3193..>3426
                     /locus_tag="VE567_00490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47351.1"
                     /translation="MQPHLPPQADAQLSHFGRLAILFMTGACQARRLALPVKLNENWE
                     GRSIIVRVIGIGAAMLLTAAAPVQPSPNSYGDTL"
BASE COUNT          581 a         1112 c         1153 g          580 t
ORIGIN      
        1 ggcggccgcc cgcgcggtct cgacatcggc gtcgctgacc aagccgtcag cgcggagacg
       61 ctgcgcgcgc gccagggccg cattcgcagc cgccgcgtcg ctgttcgcct tcgcgacatc
      121 gagctgcgag gccggcgtcg gcctcagcac ggcaaccact tgaccggccc gaaccgcggt
      181 gccggtggga gcgatgattt cggccagtct cgcctcggtt tgaacggtca gcgcatgctg
      241 gccgcccggc cccgcttccg cgagcccgta ggcagacacc gtgtcgctgg tcgcgccaag
      301 cgtggccgtt gcggtccgca ccgttgcggt cggggcggga ggctcgcctt cttcggccgc
      361 gccgcccgag caggcggcaa ggagcgcaag cggcgccaat gccataatcg ttttcacttg
      421 gtccaccctt cactgaggcc gccggacagg agctcgagcg caatggtttg ctccgctgcc
      481 tgctggtcga gttgcaaaag agtcagcttg cggtcgcgca cgacttgctg cgcggcgatc
      541 gcggtcgctg ggggcagatc gccgcgtttg gcggcgcgcg ccgtggcgtt ggcataacgc
      601 tcgagcgcgg gcagctcggc cgcgagtgcg gagcgctgcc ttcgcaccgt ggccagcccg
      661 acgacagccg catcgatatc ggcgcgggtc tgcgccagac gcgcttcata ttccgtcttg
      721 agctgctcgc gcgtcgcctt ggcgacggcg atcccgcccc tgttgcgatt ccacagcggc
      781 agggtgaagc ccacttgcgg gccggccgta tagttgttgg ccgtgtcgcg cgcgccggcg
      841 agcgtcaggc ccagcgaggg gaattgatcg aggatcgcct tgtgcacgtc ggcctcggca
      901 gagtcgtagc cggcacgcaa tgccgcaaga tcgaggcggc gatcgagcgc ttgcgtaagc
      961 agcacggacg tggacggcgg tgcctccggc gccgggggag gcgccagacg caacacggtt
     1021 tccggcggca ggcccaattg cttgttgagc tcgcctctcg cggtcgcgag atcgcgctcg
     1081 gcgacgcgaa ccttgtcggc gctgtcgagc gcggcctgac ggcgcgtgtc gacctcgctg
     1141 ccgggcaggt cgccacgtcc ggcggcatgg atcgccgcag cgagctgctg cgcagcggtc
     1201 gcggcgctga ttctcgcaat ctccagctgg gcctcgaggg ccagcacgcg aacgccctgg
     1261 agacgcgcct ggccggcggt ctgccactcc gcccatgcca gatcgagcct cacctggcgc
     1321 ttcttggcat cgttcgattc acgcaccact ttcgcggtgc gcagctgggc gaggtcgaac
     1381 ccgatctggc cgccaaagcc gtcgaacgga tccggtccgg agatgcgctt gtcgaaactt
     1441 ccctgagcgg tggggtcggg cagcagccgc gcagcaaagg cttgtgcatc ggttacgccg
     1501 ttcttggcac gcagcgcttt caggtcggga ttctcgatca ctgcgatgat cgccagcgca
     1561 ttgggcgtga gcggctgcga aagatcgatg tcctgcggcg ccaggaacgg ccgctggatc
     1621 gtttgggcat cggcggacag cgcggcgatg tcgggcggcg cgagcacgtc gccgggcgcg
     1681 cgcagcgggc tggccgaata gctctggcac ccggccaacg cgccggcagc gacaagcggc
     1741 caaaggcggt gcgaacgtct caccggcctg tccttgcaag gctgggcatc gtcttcactc
     1801 cggtcgtctt catgattgca gcagggtcct aaggcgcggt cgcgaggtaa agtggagtaa
     1861 gcacaacatt gcgaaccgtc ccgccgaatt ccgtcttggc aagcgacacg atctcctcaa
     1921 gcaatgcctc tcgccgcgga tcgggcagcg cccgcacata ggagtagctt gcatagagcg
     1981 cgcgcacacc ctccgcatcg agtattcgat cgcggcggaa aagcatggca gcgaaatcca
     2041 gaaacccggc tcccgtcact gcttcacgat gaaagtcggc attcaaagaa taatgcccat
     2101 cggagccttc ggagggcggg aggtcgatat cgtccagcaa cggcgtgacg gcatcggcaa
     2161 attcgtcccc gacgcccacc tgccggtaca cattccacca cagcgcaagc gtcgcacctg
     2221 gacgcaacac catgcgcagg cgtgcgaatg ctgcgtcggg gtccagccag tggaaggaag
     2281 cggcggcgca agcgaggtcg aaccgccctt ccacataggc cgatgcaaag ggctccgcca
     2341 cgatccggag acgcggatcg acgattgccc gatgcaaatg gtcggccagc gccggatcgg
     2401 gctctaccgc gaccaaccgg gcaggctgca ggttcgtcag caattccgcc gtcgcgaggc
     2461 cggtgcccgg gccgatctcg atcgtgtccg gcgcaccgcc gcaacgtgcg cggatcgcgg
     2521 catagagctc tgtgggatag cctatgcgcg cgacccgata gccctcgacg tcagacccga
     2581 aaacatgtcc tccgaccgac ctgggcaggc gacgcgccgg cggtgcgggc gcgaacatcg
     2641 atcagttcgc gcgctggaac agcgcctcat agctgggaat cttccgcgca agcgcgtccc
     2701 gcaggtcgag cgcgcgggta tagtatttcc gctcgccggc attcgattcc acaggaactt
     2761 tgaaggcgta aacgaccagg ccgatattct ccatgtgcgc atcgcgcaac ggcatcagaa
     2821 cgacgaactt gggcgcgggg tcattcgggc gatgccatct cgggtcgacg atcgtgatgc
     2881 ccttcttggt gacatcgata tcgtcgggat cgtccgggtt gccgatacga tcgggatagg
     2941 agccggcaaa catcgtatag acgttgctca tgcccggcgg cacgccgtgg aacgtaacgc
     3001 tcagcaggtc cggattggcc ttcatggtct cgtccgacag cttctgcgcg tagatggagt
     3061 aggacggcgg agtccaattc ttgacgggag cgtcggcggc gacgacgccg gtgctgccca
     3121 tggcggcgac aagagctgcg gggatgatca aacgcttcag catgacaggt cctctcccaa
     3181 atcaggattt tgttgcagcc gcatctgcca ccgcaagctg acgcccagct gtcacatttc
     3241 gggcgcctcg cgatcctttt catgacaggc gcttgtcagg cgcgcagatt agccttgccg
     3301 gtcaaactca atgagaattg ggaggggagg agcattatcg tgcgagtgat cggcattggc
     3361 gccgcaatgt tgctgacggc ggccgcacct gttcagccgt cgccgaattc ctatggcgac
     3421 accttg
//
LOCUS       DASQVK010000022         2149 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_381017,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000022 DASQVK010000000
VERSION     DASQVK010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2149
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381017"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..361
                     /locus_tag="VE567_00495"
     CDS             <1..361
                     /locus_tag="VE567_00495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TerD family protein"
                     /protein_id="HYZ47352.1"
                     /translation="EHAGDNRTGGGDGDDEQIRVDLSRVPADIQKVAVTVTIHEGESR
                     RQNFGMVANAFIRVVEETSGREITRYDLNEDASTETAMIFGEVYRHNAEWKFRAVGQG
                     FKGGLGPLARNYGVSIG"
     gene            851..1561
                     /locus_tag="VE567_00500"
     CDS             851..1561
                     /locus_tag="VE567_00500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47353.1"
                     /translation="MSLTDAQTVFASIHETAINDLLTAFATARPHYLAYGSPAFVPVT
                     TVAETSIPAINFPGVPGGIQWRLRLGIPRVDLFKQSSALPPQLVLGPGQFSAEVDVEL
                     CIECRRLRIDPKPPRPPKGQDHDQHDQPPRDDGKHPLSELTCFRLRVFAVGHIEHVLS
                     ASGEDAITFAVDAVEIVDIKPDELESFLECLLFLILQAVLANVRLPLRALRAGAFQLT
                     PTVGPLIEDDSVKARGTL"
     gene            1584..>2149
                     /locus_tag="VE567_00505"
     CDS             1584..>2149
                     /locus_tag="VE567_00505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47354.1"
                     /translation="MPEIIAALDEGGANTLLDAVIGLLPARSASGSGNLGPFVASYSV
                     TASLVNGDVDLRAPDIIRLVDLQVNWHLNLDFGIDLSSILPDFCLPQVCVDIPCVGTV
                     CTPRICIDWPTITVPVSFGDFVRATGDFRLAINLAGGVWKVEAEIVGLPSLQFGATTA
                     LLLAAIGAAVTPILLAIPFIGPFLAIAV"
BASE COUNT          347 a          730 c          675 g          397 t
ORIGIN      
        1 cgagcacgcg ggcgataacc ggacgggtgg cggcgatggc gatgacgagc agatccgggt
       61 cgacctctcc cgcgtgcccg ccgatataca gaaagtcgca gtcacggtga cgatccatga
      121 aggcgagagc cgtcggcaga atttcggcat ggtcgccaac gctttcattc gcgtggtcga
      181 agagacctcg ggccgcgaga tcacgcgcta cgacctcaac gaagacgcct cgactgaaac
      241 tgcgatgatc ttcggcgagg tttaccgcca caacgcggaa tggaaattcc gcgccgtcgg
      301 ccagggcttc aagggcgggc tggggccgct ggcgcgcaat tacggcgtca gcatcggctg
      361 agcccccggg gctgctcagc agggggagca gccccgcgtt tgacgggttg gccgtgagtg
      421 gctggcggtc aggtcgaccg ctggccctcc cgatcgccgc agacggacgc ctccccatct
      481 ccgctcaacg gctcgtcgca tctgtcgcat tcctacaagc ggatcagtcg cttttcagcg
      541 ataactcatg ccagacgaga aggcgcttcc gggcggccca ccatgcgagt ggacggttcg
      601 ggcggtctcc gcaggccgca gtttagcgca atcgctcgtc cctcgggttg gccaaaaagc
      661 ctgtagccgc gtccgtgctg cggtcgcgat cggtccgatc gcgcgcctgg ccgggcgcac
      721 gactgggaga gcgggatggc cgacgtcgcg caagtggatt ggttcgctca tgcctgcggt
      781 ggtgcgcggc tatgtgcgct gccgtctccg tccggctgtg tccgcttccc gaccagccac
      841 ggaggaactg atgagcctga ccgatgccca gacggtcttt gcaagcattc acgagaccgc
      901 gatcaatgac ctgctgacgg cctttgccac ggcgcgtccg cactatcttg cctatggctc
      961 gccggcgttc gtgccggtga ccaccgtcgc ggagacgtcg atcccggcga tcaacttccc
     1021 cggggtgccc ggcggcatcc aatggcggtt gcggctaggc attccgcgcg tcgatctttt
     1081 caagcagtcg tcggcgctgc cgccgcagct cgttctcggc ccaggtcagt tcagcgccga
     1141 agtcgatgtc gagctttgca tcgaatgccg ccgcctgcgc atcgacccga agccgccgcg
     1201 gccgcccaag ggccaggatc atgaccagca tgatcaaccg ccacgcgacg acggcaagca
     1261 tccactcagc gagctcacct gcttccggct gcgcgtgttc gcggtcggcc atatcgagca
     1321 cgtgctcagc gcaagcggtg aggacgcgat cacgttcgcc gtcgacgccg tcgagatcgt
     1381 cgacatcaag cctgacgaac tcgaaagctt cctcgagtgc ctgctgttcc tgatcctcca
     1441 ggccgtgctc gccaatgtcc ggctgccgct ccgcgccctg cgcgcgggcg ccttccagct
     1501 gaccccgacc gtgggtccgc tgatcgaaga cgacagtgtg aaagcgcgcg gcaccctctg
     1561 accgccattc caggagacat tccatgccag agatcatcgc ggccctggac gaaggcggcg
     1621 ccaacacgct gctcgatgcc gtcatcggcc tacttccagc ccggtccgcc agtggatcgg
     1681 ggaatcttgg accattcgtc gccagctatt ccgtcaccgc ttcgctggtg aacggcgacg
     1741 tcgatctacg ggctcccgac atcatccgcc tcgtcgacct gcaagttaat tggcatctca
     1801 accttgattt cgggatcgat ttgagctcga tcctgcctga cttctgcctg ccgcaagtct
     1861 gcgtcgacat cccatgcgtc ggcacggtgt gcacgccgcg catctgcatc gactggccga
     1921 ccatcacggt cccggtctcg ttcggagact ttgtccgggc gactggcgat ttccgcctcg
     1981 cgatcaacct cgcgggcggc gtgtggaaag tggaagccga gatcgtgggc ctgccgagcc
     2041 ttcagttcgg cgctaccacc gcgctgctgc tggcggcgat cggcgcggcg gtgactccga
     2101 tcctgctcgc cattcccttc atcggcccgt tccttgccat cgcggtgga
//
LOCUS       DASQVK010000023         2292 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_349238,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000023 DASQVK010000000
VERSION     DASQVK010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2292
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349238"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..745)
                     /locus_tag="VE567_00510"
     CDS             complement(<1..745)
                     /locus_tag="VE567_00510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013933700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HYZ47355.1"
                     /translation="MADKVLVTGVSGFVGAAVARLLAGEGFAVRGLVRSSSARTNLAD
                     FPGELVEGDARDEAAVARGAAGARYLFHVAADYRIWAPDPNEIARNNVAMTEAVMNAA
                     LGAGAERVVYTSSVATLKPDPAGPADESRPAGPDEAVGAYKRSKVLAERQVERLVAER
                     ALPAVIVNPSTPIGPRDVKPTPTGRIIVEAASGRMPAYVESGLNLVHVDDVARGHLLA
                     LQRGRIGERYILGGQDVPLGEMLREIARQT"
     gene            795..1934
                     /gene="hpnI"
                     /locus_tag="VE567_00515"
     CDS             795..1934
                     /gene="hpnI"
                     /locus_tag="VE567_00515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohopanetetrol glucosamine biosynthesis
                     glycosyltransferase HpnI"
                     /protein_id="HYZ47356.1"
                     /translation="MEQALAGIFHGLGWLLLALAALGSLYTLVSALVLHRFFAGSAPP
                     GRHDVPVTILKPLHGAEARLEDNLTTFLAQDYAGPVEMVCGVGDREDSAVAIVDRLGA
                     PVRLIVDPARHGANAKVSNLINIARNATLAPVVVISDSDIAVAPDYLAHIVDALETPG
                     VGAVSCLYRGRGDAGFWSQLAAGWPSYQFLPGAVFALATGIATPSMGSTIALRRETLE
                     RIGGFERFADILADDDAIGRAVEALGLRIAVPPMLVVHASDERSFGAVWRHELRWAVT
                     VRDITPAGYAGSVIGLPFPGALLGAALTGAGVPALLVIATALASRLILARAVDRASGE
                     RAMPLWLLPLRDLLSYVVFFASFFVRSVDWRGSRLTMQKHGRIAA"
     gene            1946..>2292
                     /locus_tag="VE567_00520"
     CDS             1946..>2292
                     /locus_tag="VE567_00520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011240826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hopanoid biosynthesis associated radical SAM
                     protein HpnJ"
                     /protein_id="HYZ47357.1"
                     /translation="MKSTLFLQAPSFDGYDGGAGARYQMKREVRSFWYPTWLAQPAAM
                     VEGSKLVDAPAHDLSWEDIAHEVDGRELVILHTSTPSFRQDVRTAELIRARNPAALIG
                     LIGAKVAVESEKSL"
BASE COUNT          324 a          832 c          735 g          401 t
ORIGIN      
        1 ccgtctgccg ggcaatctcg cggagcattt cgcccaaggg tacatcctgc ccgccaagga
       61 tgtagcgctc gccgatcctg ccccgctgca acgccagcaa atgcccccgc gcgacgtcat
      121 cgacatgcac gaggttgagc ccgctttcga cataggccgg catccgcccg ctcgccgcct
      181 cgacgatgat gcggccggtg ggcgtaggct tcacgtcgcg cggtccgatc ggcgtcgatg
      241 ggttgacgat gacggccggc agcgcgcgtt ccgcgaccag tcgctcgacc tgccgctcgg
      301 cgagaacctt ggaccgctta taggcgccga ccgcctcgtc tgggccggcc ggccggcttt
      361 cgtcggcggg tccggccgga tctggcttca gcgtcgcgac gctgctcgta tagacgactc
      421 gctcggcccc cgctcccagc gcggcgttca tcactgcctc ggtcatcgcg acattgttac
      481 gcgcgatctc gttcgggtcg ggcgcccaga tgcgataatc ggccgcgacg tggaacagat
      541 agcgtgcgcc ggcggccccg cgcgcgaccg ccgcttcgtc ccgggcatcg ccttcgacca
      601 gctcgccggg aaaatcggcc aggttcgtgc gcgcgctcga ggaccggacc agcccgcgca
      661 ccgcaaagcc ttctccggcc agcaaccgcg caaccgccgc cccgacgaag cccgacacgc
      721 ccgtcaccag aaccttgtcc gccatgcccg aggaaaatcc tgacttgtcc tccgacattg
      781 gctagagagc agcgatggag caagcgctgg ccggaatctt tcacgggctt ggctggttgc
      841 tcctcgcgct ggcggcgctc ggcagccttt acacgctggt ctcggcgctg gtcctgcacc
      901 gcttcttcgc agggtccgcg ccgcccggcc gccacgatgt gccggtcacg atcctgaagc
      961 cgctgcacgg cgccgaggcg cggctggaag acaatctcac gactttcctc gcccaggact
     1021 atgccggtcc ggtcgagatg gtctgcggcg ttggcgaccg cgaggattcc gcggtggcca
     1081 tcgtcgatcg gctcggcgcg ccggtgcgcc tcatcgtcga tcccgcgcgg cacggcgcca
     1141 acgccaaggt ctcgaacctg ataaacattg cccgcaatgc cacgctcgcg ccggtcgtgg
     1201 tcatcagcga tagcgacatc gccgtagcgc ccgactatct cgcccatatt gtcgatgcgc
     1261 tcgaaacgcc gggcgtcggc gcggtctcgt gcctctatcg cggccggggc gatgcgggtt
     1321 tctggtcgca gctcgccgcc ggctggccga gctatcaatt ccttcccggc gcggtgttcg
     1381 cgctcgcaac tggaattgca acgccctcga tgggctccac gatagcgctc cgccgcgaga
     1441 cgctggagcg gatcggcggc ttcgagcgct tcgccgacat tctcgccgac gatgacgcca
     1501 tcggccgcgc cgtcgaggcg ctgggcttgc gcatcgccgt cccgcccatg ctcgtcgtcc
     1561 atgcctcgga cgagcggagc ttcggggcgg tctggcggca cgaactccgc tgggccgtga
     1621 ccgtgcgcga catcacgccc gccggctatg cggggtcggt gatcggcctg cctttccccg
     1681 gcgctctcct cggcgcggcg ctgacgggcg cgggcgtgcc tgcgctgctc gtaattgcca
     1741 ctgccctcgc aagccgcctc atcctcgccc gcgcggtcga tcgggcgagc ggcgaacgcg
     1801 cgatgccgct ttggctgctc cctctgcgcg acctgctcag ctacgtggtt ttcttcgcca
     1861 gcttcttcgt tcgctcggtt gattggcgcg gcagccggct tactatgcag aagcacgggc
     1921 gcattgccgc ctgaatgagg attcgatgaa atctacccta ttccttcagg cgccttcgtt
     1981 cgacggctat gacggcggcg cgggcgcgcg ctaccagatg aagcgggaag tccgcagctt
     2041 ctggtatccc acctggctgg cccagcccgc cgcgatggtc gaaggctcga agctggtcga
     2101 cgcccccgcg cacgatctct cctgggaaga tatcgcgcat gaggtggacg ggcgcgaact
     2161 cgtcatcctg cacacatcca cgcccagctt tcgccaggac gtccgcaccg ccgagctgat
     2221 ccgggcgcgc aatcccgcag cgctgatcgg cctcatcggc gccaaggtgg ccgtcgagtc
     2281 cgaaaagtcg ct
//
LOCUS       DASQVK010000024         2251 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_96409, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000024 DASQVK010000000
VERSION     DASQVK010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2251)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2251
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96409"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..472
                     /locus_tag="VE567_00525"
     CDS             <1..472
                     /locus_tag="VE567_00525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pirin-like C-terminal cupin domain-containing
                     protein"
                     /protein_id="HYZ47358.1"
                     /translation="DDLPLVDGNGVRARVIMGSLWGRTAPTTCYAETIYADIQLDPGA
                     SVPIDAAADERAVVVALGDASLDGAPLDLYTLYILKPGVPMVLRSASGGRVMLLGGEA
                     FATPRHVWWNFVSSSRERINQAKHDWKEGRFPLVPGDAEEFIPLPEVPLTVSYP"
     gene            572..1477
                     /locus_tag="VE567_00530"
     CDS             572..1477
                     /locus_tag="VE567_00530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYZ47359.1"
                     /translation="MMMTLQQQRFHLPTGVDLDVTFGGPRDGEALIFLHGFPESHRTW
                     RHQLADLADSYFVVAPDQRGYAGSSKPADVADYEPGKPVADLIALADALGLERFTLVG
                     HDWGGAIAWMAAIRHPERIGRLIILNAPHPFVFQRTLIDDPAQRQASQYIRVFRDPLF
                     ETKLGAMGLEKFFEVSFMSHADGEKLTDEEKQVYLDQWRTPGAFTAMLNWYRAAAVIV
                     PATDEEVARPPFLDGPFPVLDMPVLVIWGMRDTALLPVQLDGLAEFVNDLTVDEVDAG
                     HFVTWEAPEEVNAAIRRFLKEKPPA"
     gene            complement(1731..>2251)
                     /locus_tag="VE567_00535"
     CDS             complement(1731..>2251)
                     /locus_tag="VE567_00535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYZ47360.1"
                     /translation="VTFAQYLSTRIRGAMIDELRRQATITRGAMRRRRELAEAESTLA
                     VQLGRAATEEETAQRLGVTIERLRADYVAAQPVRFEPIDGIYTDDNPWFMSDDPNPFE
                     LLESEDLRHALLAAIGQLSEREAQVIQLYYVEELNLEEIGIILGVGAARVCQIKKSAH
                     DKLKKALEARIG"
BASE COUNT          372 a          768 c          707 g          404 t
ORIGIN      
        1 cgacgacctg ccgctggtcg acggcaatgg cgtgcgtgcc cgcgtgatca tgggctcgct
       61 ctggggccgg actgcgccca cgacctgcta cgccgaaacc atctatgccg atattcagct
      121 ggaccccggc gcctcggtgc cgatcgacgc cgcggccgac gagcgcgcgg tggtggtcgc
      181 gctgggcgac gccagcctcg atggcgcacc gctcgacctc tacacgctgt acatcctgaa
      241 gcccggcgtg ccgatggtgc tgcgctcggc aagcggcggg cgcgtgatgc tgctcggcgg
      301 cgaagccttc gccacgccgc ggcacgtctg gtggaacttc gtctcctcca gccgcgagcg
      361 catcaaccag gccaagcacg actggaagga aggccgcttc ccgctggtgc ctggcgacgc
      421 cgaggaattc atcccgctcc ccgaagtgcc gctgacggtc agctatccat aattcccgcc
      481 ccgcttgcgg gaggcgcgag gggtgggcaa gagcgttgga gaccgagtca cgcgggatag
      541 gctcaccggc ccctcctgca agcgggaggg gatgatgatg accctgcagc agcaacgctt
      601 tcatttgccc acgggcgtcg atctcgacgt aacatttggc ggcccgcggg atggcgaggc
      661 gctgattttc ctccacggct ttcccgaatc gcaccgcacc tggcggcacc agctcgccga
      721 tctggcggac agctatttcg tcgtcgcgcc cgatcagcgc ggctatgcgg gctcgtcgaa
      781 gcccgccgat gtcgcggact acgagcccgg caagccggtc gcggacctca tcgcgctggc
      841 cgatgcgctc ggcctcgaac gcttcaccct ggtcgggcat gattggggcg gcgcgatcgc
      901 gtggatggcg gcgatccgcc atccggagcg gatcgggcgg ctgatcatcc tcaatgcccc
      961 gcatcctttc gtcttccagc gcacgctgat cgacgacccg gcgcagcgcc aggcatcgca
     1021 atatatccgc gtcttccgcg atccgctgtt cgagaccaag cttggcgcaa tgggcctgga
     1081 gaaattcttc gaagtcagct tcatgagcca cgccgatggc gagaagctga ccgacgagga
     1141 aaagcaggtc tatctcgatc agtggcgcac acccggcgcg ttcactgcca tgctcaattg
     1201 gtatcgtgcg gcggctgtga tcgtccccgc aacggacgag gaggtggcgc gcccgccctt
     1261 tctcgacggg cccttcccgg tgctcgacat gcccgtgctc gtcatctggg gcatgcgcga
     1321 caccgcgctc ctgcccgtgc agctcgatgg gctggccgag ttcgtcaacg atctcacggt
     1381 cgacgaagtc gatgccgggc acttcgtcac ctgggaagcg cccgaggaag tgaacgccgc
     1441 gatccggcgc ttcctgaagg aaaagccgcc agcctgaatc cctctcccca gcggagagaa
     1501 ggaccccgcg ctaattcctg tcctacaccc ctaaagccgt gccacgctcc gcactggctc
     1561 tttcttatcg tcgatcatcg ctgcccgatt tcaccatagg tcgcagctga accacggctc
     1621 gtcgcatggc tcttcttgca aggccctgca acgacacgga aaagtcccgc taagttcacg
     1681 aaataggtca cgcaccctaa gacgtttgtg aacttaaggg ccagcgcagc tcagccgatc
     1741 cgcgcttcca gcgccttttt cagcttgtca tgggcgcttt tcttgatctg gcagacccgc
     1801 gccgcgccga cgcccaggat aatgccgatc tcctcaaggt tgagctcctc gacataatag
     1861 agctggatca cttgcgcctc gcgctccgaa agctggccga tcgcggcgag cagcgcgtgc
     1921 cggagatcct cgctttcgag cagctcgaac gggttcgggt cgtcgctcat gaaccaggga
     1981 ttgtcgtcgg tatagatgcc gtcgatcggt tcgaagcgga ccggctgggc ggccacatag
     2041 tcggcgcgca gccgctcgat cgtaacgccc agccgctgtg cggtctcctc ctcggtcgcg
     2101 gcgcggccga gctggacggc aagcgtcgat tcggcctcgg cgagttcccg ccgccggcgc
     2161 atcgccccgc gcgtgatcgt tgcctgacgc cgcagctcgt cgatcatcgc gccgcggatg
     2221 cgggtcgaga gatattgggc gaacgtcacc t
//
LOCUS       DASQVK010000025         5693 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_381239,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000025 DASQVK010000000
VERSION     DASQVK010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5693
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381239"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1314)
                     /locus_tag="VE567_00540"
     CDS             complement(<1..1314)
                     /locus_tag="VE567_00540"
                     /inference="COORDINATES: protein motif:HMM:NF016462.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="surface lipoprotein assembly modifier"
                     /protein_id="HYZ47361.1"
                     /translation="MPGLILLAAGAAMAAPAPAPAPPATCDGQTCEVKLTGDQLLAAT
                     ERLVRQRRFTEAKPLIEALGRAPRYRIQSLFLTGYAAVETGRLDDAEHAFRQLLEIDP
                     KQTRVRLELARVLMLKGDREAADHHFRLASQDKSLPPEIAATIRSVRGIIRDQRAWRF
                     SFDFGFAPDTNINNATSAEQVDLLVSPNNRQPFTLNPDARARSGLGLVGSFSGGLRIK
                     QSERLALLIDGDGQFTHYANDDFDDYVFQLAVGPERKLSAASTVSLQAVGLQRWYGGK
                     TAQQQAGVKAGFQSLLDKGQRIGVQVDVRHTDSSFGDSYKGWQYSGYATYERVVMRTM
                     IASASVFARREALHADALSNTETGFNLGIGGELPHGMNAGLSGGLSYADYDGPIQLFS
                     DYPRHDFRANIRAYLGSRAIRILGFSPSVTYTFTHNGSNYDLYASD"
     gene            complement(1322..2497)
                     /locus_tag="VE567_00545"
     CDS             complement(1322..2497)
                     /locus_tag="VE567_00545"
                     /inference="COORDINATES: protein motif:HMM:NF013466.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HYZ47362.1"
                     /translation="MRKFFALLPFLALAACGGSSGGVNTLGGLASPAPGTTGGTGGGV
                     TGGTGGGVTAGTGGSGSTATPTSFLTANGAKTYNAVGGASSLSINSTNGSLYQGDAST
                     VKSPLGTINYDPRDGIFTVTLNDTKSGVNANIRAQDPAHRTDFNPGATPQSGVPDFAG
                     FNYLEVLNGTNDLSTFFYQRPGVATVYVTLAGYVRNLTPANPATQTFDRAAMVFGDQT
                     NVFQVPASGTASYSGGFIASMVNNPTFDSTSQKPSYYQWVSGISDVNVDFGKQTFALA
                     LNGTVDSVGAAQTTIPDHASFTATGGGTIDLVRFGGFSGAFSSACFVAACGTAGAVPI
                     DFTGVNPTTSTAGASSIDGAFYGPNAVNVGGSFRIIGGVPDQRVDMTGAFTGAKTGN"
     gene            complement(2574..3353)
                     /gene="purC"
                     /locus_tag="VE567_00550"
     CDS             complement(2574..3353)
                     /gene="purC"
                     /locus_tag="VE567_00550"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011950954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HYZ47363.1"
                     /translation="MARRRQIYEGKAKILYEGPEPGTLIQYFKDDATAFNAQKKGTIS
                     GKGVLNNRISEHIFTLLGGIGVPTHFIRRLNMREQLIRQVEIIPIEVVVRNVAAGTLS
                     KRLGIEEGTQLPRTIIEYYYKDDALGDPLISEEHIACFGWASQEEMHDIQDMAIRVND
                     FMCGLFAGIGIRLVDFKLEFGRVWDNDYGRVILADEISPDGCRLWDMESGEKLDKDRF
                     RRDLGGEVEAYQEVARRLGLLPEDGENSVLDLESHRKRRGR"
     gene            complement(3472..3993)
                     /locus_tag="VE567_00555"
     CDS             complement(3472..3993)
                     /locus_tag="VE567_00555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016745725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HYZ47364.1"
                     /translation="MHLGRILLAAAIAASAPLTTGAIDRTANFDQRLLAAHNRERAQL
                     GVPALAWDDELARGAKAWADALAATGQFEHSAADPSDPETPGENLWAGSRGAWAPEEM
                     VGYWIAEKRDYVPGSIPAVSRSGDFEKVGHYTQVIWRNTRKVGCALAHGAKEDILVCR
                     YSQGGNVIGERAI"
     gene            complement(4044..4232)
                     /locus_tag="VE567_00560"
     CDS             complement(4044..4232)
                     /locus_tag="VE567_00560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47365.1"
                     /translation="MRDEYDDRIHQTLRHDFAANVAAIAASVAHAFDRLHERLYAAPW
                     SQSLAAKEPTCTAKLRTH"
     gene            4346..5281
                     /locus_tag="VE567_00565"
     CDS             4346..5281
                     /locus_tag="VE567_00565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HYZ47366.1"
                     /translation="MRRLPPLAAVRVFEAAARHQNFTTAGQELGMTQAAVSYQIKLLE
                     ERLGVSLFRRERGRVALSETGRRIGPLVGKAFDDLDTAFGMARSSSESVLTVSCSTTF
                     GPNWLASRIGAFQLKAPEVAVRLHSSNTLVDFARDDVDVAIRAGRGEWPGLTSHFLMR
                     MPLMVLASPTFLEKAPPVRGPDDIMRLPRISPDDSWWRAWREQVGGDIMDGAPVGIRM
                     DTQIAEGQAAIAGAGVAILNPVLWRDEIRAGRLVPVIDAFAFDANDFWLVYPEHRRQS
                     RKIRLFRDWILQTVAEEAAQGRPEFYCAPDIGEAM"
     gene            5300..>5693
                     /locus_tag="VE567_00570"
     CDS             5300..>5693
                     /locus_tag="VE567_00570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HYZ47367.1"
                     /translation="MRASDVPHPQLTRRRLLVTGGLGVGLVVAWAAWPRRYEPNLVAG
                     RGETILGAYLKIAEDGRVTVAVPQVETGQGVYTTLPQIVADEIGADWRTVGVEAAPIN
                     PLYANRLFVEELAAGVAPAWKDVAGEFAT"
BASE COUNT         1009 a         1728 c         1921 g         1035 t
ORIGIN      
        1 gtccgacgcg tagagatcgt agttcgagcc gttgtgcgta aatgtgtagg tgaccgacgg
       61 cgaaaagccg agaatgcgga tcgcgcggct gccgagatag gcacggatat tggcgcgaaa
      121 atcgtggcgt ggatagtcgg agaaaagctg gatcggcccg tcataatcgg cataggagag
      181 gccgccggac aaaccagcgt tcatgccgtg cggcagttcg ccgccgattc ccagattgaa
      241 accggtctcg gtgttggaaa gcgcatccgc atgaagcgct tcgcgccgag cgaaaacgct
      301 cgctgacgca atcatcgtcc gcatgacaac ccgctcgtag gtcgcatagc cgctatattg
      361 ccagcccttg tagctgtcgc caaagctgga atccgtgtgg cgcacgtcga cctgcacgcc
      421 aatccgctgg cccttgtcga gcagagactg aaagcctgcc ttgacaccgg cctgttgctg
      481 cgcggtcttg ccgccatacc agcgctgcag accgaccgcc tgcagcgaga ccgtgctggc
      541 cgcactcagc ttccgctccg ggccgacggc aagctgaaag acatagtcgt cgaaatcgtc
      601 gtttgcgtaa tgcgtgaatt ggccatcgcc gtcgatcagc agggcgagcc gctcgctctg
      661 cttgatacgt agcccgccgg agaaactgcc gaccaggccc aatcccgatc gcgcccgcgc
      721 gtcggggttc agcgtgaaag gctggcggtt attggggctt accagcaaat cgacttgctc
      781 agccgaagtc gcattgttga tgttcgtatc tggggcgaag ccgaaatcga agctgaagcg
      841 ccaggcgcgc tggtcgcgga tgatgccgcg cacggagcgg atggtggcgg cgatctcggg
      901 cggcaggctc ttgtcctggg aggccagccg gaaatgatga tcggcggctt cccggtcgcc
      961 tttcagcatc agcactcggg cgagttcgag ccgcacgcgg gtctgtttgg ggtcgatctc
     1021 gagcagctgg cggaaggcat gttcggcgtc gtccagccgg ccagtctcga cggctgcata
     1081 gcccgtgagg aatagcgact ggatacgata gcggggcgcg cgtccaagcg cctcgatcag
     1141 cggcttggcc tcagtgaagc ggcgctggcg gaccaaccgt tccgtggcgg cgagcagctg
     1201 atcgccggtc agcttcactt cgcaggtctg tccatcgcag gttgccggag gcgcgggggc
     1261 aggggccggt gcggccattg ccgctccggc tgcaagcagg atcagacccg gcacggctgg
     1321 actaattgcc ggtctttgcg ccggtgaacg cgccggtcat gtcgacgcgc tgatcgggaa
     1381 cgccgccgat gatccggaag ctgccgccga cattcacagc gttcggcccg taaaaggccc
     1441 catcgatcga gctcgcgcct gcggtgctcg tagtcgggtt cacgccggtg aagtcgatcg
     1501 gcaccgcacc ggccgtgccg caggcggcga cgaagcacgc gctgctgaac gcgcccgaaa
     1561 agccgccgaa acggaccaga tcgattgtgc cgccgccggt cgcagtgaag ctcgcatggt
     1621 ccgggatcgt ggtctgggcg gcgcccacgg aatccaccgt gccgttgagg gccagggcga
     1681 aggtctgttt gccgaaatcg acgttgacgt cactaatgcc cgagacccat tggtaatagc
     1741 tgggcttctg cgacgtgctg tcaaaggtcg ggttgttgac catgctggcg atgaagccgc
     1801 cggaatagct ggccgtaccg cttgccggca cctggaagac attggtctga tcgccaaaca
     1861 ccatcgccgc gcggtcgaaa gtctgcgtcg cgggatttgc gggcgtgaga ttgcggacat
     1921 agccggccag tgtcacgtaa accgtcgcga cgcccggccg ctgatagaag aaggtggaga
     1981 ggtcgttcgt gccgttcaaa acttcgagat agttgaagcc ggcgaaatcg gggacgcccg
     2041 actgaggcgt cgcgccagga ttgaagtcgg tgcggtgcgc cggatcctgc gcccgaatat
     2101 tggcgttgac gccggacttg gtgtcattga gcgtgacggt gaaaatgcca tcgcgcggat
     2161 catagttgat tgtgcccagc ggtgatttca ccgtgctggc gtcgccctgg taaagcgagc
     2221 cgttcgtgct gttgatgctg agcgaactcg ccccgcccac cgcattgtag gtcttcgcgc
     2281 cgtttgccgt gaggaagctg gtcggcgtcg ccgtgctgcc gctgccgccc gttcccgcgg
     2341 tgacgccacc gcccgtaccg ccggttacgc cgccgccagt gccgccggtg gtgcctgggg
     2401 ccggagaggc aagtcccccc agcgtattca cgccaccgct gctgccgccg caagcagcca
     2461 gggcgaggaa cggaagaagg gcgaagaact tgcgcataaa ggagcgtcct cacgattggt
     2521 cgcgggacgc tctaaacaat agtcgttaag gccgcctaaa gcgcggaggc atttcagcgc
     2581 ccgcgccgtt tgcggtgact ttcaaggtca agcacggagt tctcgccgtc ttccggcaac
     2641 aggcccaggc ggcgggcgac ttcctgatag gcctcgactt cgccgcccag gtcacggcgg
     2701 aagcggtcct tgtcgagctt ttcgcccgat tccatgtccc acagccggca gccgtctggg
     2761 ctgatctcgt cggccaggat cacacggcca tagtcattgt cccagacccg gccgaactcc
     2821 agtttgaaat cgaccaggcg gatgccgatc ccggcgaaca ggccgcacat gaaatcgttc
     2881 acccggattg ccatgtcctg gatgtcgtgc atctcctcct ggctcgccca gccgaagcag
     2941 gcgatatgtt cttcggagat cagcgggtcg ccgagcgcgt cgtccttgta gtaatactcg
     3001 atgatcgtcc gggggagctg agtaccttcc tcgatcccga ggcgtttgct gagtgtgccc
     3061 gcggcgacat tgcggacgac cacttcgatc gggatgatct cgacctggcg gatcagctgc
     3121 tcgcgcatat taagtcggcg gatgaagtgc gtgggcacac cgataccgcc gagcagcgtg
     3181 aagatatgct cggaaatgcg gttgttaagc acgcccttgc cgctgatcgt gcccttcttt
     3241 tgggcattga acgccgtcgc gtcatccttg aaatactgga tgagcgttcc cggctccggg
     3301 ccttcataga gaatcttggc cttgccttca tagatttggc ggcggcgggc catagtctgg
     3361 gctcctcggg cgtgtgttcc acgcggaaag aaaattcgcc ccgggagcgc ggatatagcg
     3421 cagccgaggc gggaaggctg gcctcttaac gcaagcgccg atgcgaggca atcaaatggc
     3481 gcgctcgccg atcacattgc cgccctggga atagcggcag acgaggatat cctctttcgc
     3541 cccgtgggcg agggcgcagc caaccttgcg cgtgttgcgc cagatcactt gggtatagtg
     3601 gccgactttc tcgaaatcac cgctgcgcga cactgcggga atcgagcctg ggacatagtc
     3661 gcgcttctcg gcgatccaat agccgaccat ttcctccggc gcccaggcgc cgcgcgagcc
     3721 ggcccagaga ttttcaccgg gcgtttcggg atcggacgga tcggcggccg agtgttcgaa
     3781 ctgcccggtc gcggcgagtg cgtctgccca ggccttggcc ccgcgggcaa gctcgtcgtc
     3841 ccaggcaagg gcgggcacgc cgagttgcgc ccgctcgcgg ttatgcgccg cgagcaggcg
     3901 ttgatcgaaa ttggcggtgc gatcgatcgc gcccgtcgtc agtggcgccg acgcggcgat
     3961 cgcggcggca aggagaatcc ggcccaaatg catgggccgg ccaattgcag ccgaacaggt
     4021 aaacaggcgt aggcttcata tggttaatgt gtacgtaact tcgcggtgca ggtgggttcc
     4081 ttcgccgcga gcgactgaga ccagggcgca gcgtaaaggc gctcgtgcag ccgatcgaaa
     4141 gcgtgagcga ccgaggcggc tatcgctgcg acattcgctg cgaagtcgtg acgaagggtc
     4201 tggtggatgc ggtcatcata ttcgtcgcgc atgttgaagc tcctgtgggc cgggattggg
     4261 cgcagtgctc aaatgctcgt tccgagaacg aaacgccaac aaagcgatgg acagactgta
     4321 taagcggggc ttatagtaag acagcatgcg ccgcctgccg cctctcgccg ccgtccgcgt
     4381 gttcgaagcc gccgcgcgcc accagaactt cacgaccgcc gggcaggagc tgggcatgac
     4441 ccaggcagcg gtcagctatc agatcaaact gcttgaggag cgccttggcg tgagtctgtt
     4501 ccggcgagag cgcgggcgcg tcgcgctgag cgagaccggg cggcgcatcg gcccgctcgt
     4561 cggcaaggcg ttcgacgatc tcgacaccgc tttcggcatg gcgcggtcga gcagcgaaag
     4621 cgtgctgacg gtcagctgct cgacgacgtt cgggccgaac tggctcgcgt cgcggatcgg
     4681 cgcgttccag ctcaaggcgc cggaggtcgc ggtgcgactg cattcgtcca acacgcttgt
     4741 cgatttcgcg cgcgacgatg tcgatgtcgc gatccgcgcc gggcgcggcg aatggccggg
     4801 gctgacaagc cattttctga tgcggatgcc gctgatggtg ctcgccagcc cgacgtttct
     4861 ggagaaagcg ccgccggtgc gcgggccgga cgacatcatg cgcctgccgc ggatcagtcc
     4921 ggacgatagc tggtggcggg cgtggcgcga gcaggtgggc ggggacatta tggacggcgc
     4981 accggtcggc atccgcatgg acactcagat tgcagaaggt caggcggcga tcgctggggc
     5041 cggcgtcgcg atcctcaatc cggtgctctg gcgcgacgaa atccgcgccg ggcggctcgt
     5101 gcccgtgatc gacgccttcg cgttcgacgc caatgatttc tggctggtct atccggagca
     5161 ccgccggcaa tcgcgcaaaa tccggctgtt ccgagactgg atcctgcaaa ccgtcgccga
     5221 agaggcagcg caaggccggc cggaatttta ttgtgcgccg gacattggcg aggcgatgta
     5281 aggctgatta aagcatacaa tgcgcgccag cgacgttccg catccacaac ttacgcgtcg
     5341 gcgcctgctc gtcaccggcg gcctgggcgt cggactggtg gtggcctggg cggcttggcc
     5401 gcgccgctat gagccgaacc tcgtggccgg ccgcggcgag acaatcctcg gagcttatct
     5461 caagatcgcc gaggatgggc gcgtgacggt tgcggtgccg caggtcgaga ccgggcaggg
     5521 cgtttacacg accttgccgc agatcgtcgc cgacgagatt ggcgcagact ggcggacggt
     5581 cggcgtcgaa gccgcgccga tcaatcctct ttatgccaat cggctctttg tcgaggagtt
     5641 ggcagcgggt gtcgctcctg cctggaagga cgtcgctggc gaattcgcga cgc
//
LOCUS       DASQVK010000026         3190 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_381325,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000026 DASQVK010000000
VERSION     DASQVK010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3190
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381325"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..101)
                     /locus_tag="VE567_00575"
     CDS             complement(<1..101)
                     /locus_tag="VE567_00575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYZ47368.1"
                     /translation="MMLEDFLDALGYRPAGCVDAVPDALARVAGGGF"
     gene            complement(198..2471)
                     /locus_tag="VE567_00580"
     CDS             complement(198..2471)
                     /locus_tag="VE567_00580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017182831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYZ47369.1"
                     /translation="MLGSGALALGFGAALLAVGALFLFTRRSASPAVVEARVHDWALT
                     AAAIESESTAVALTGRDGVLICANGLYGDWFGGFVPPTALPVPEREAGRLRMAEERAW
                     REGKARIERLQREAGPVSVDVVRIGAAEDHLVWRFRPLASLDMLNEARRLIGSGGGER
                     LGEAGIMTVLIGADARIRAGNRAFALRATGSADAAIDGRDLAAMLTVDSRGTIRFERE
                     GPAGGPVRLIQVPLDPDERTGSTLVFLIDDDSAPRLGEGSASNHIQTLLAMLPLGFAL
                     ADRDGRFLFLNEAFARVAGVEPGAEPVYPSDLVVREDKATVADTVRRFAAGPAMSGDI
                     AVRLQARPEEPVALSIAGARGLGEAAVLLSLKDNAEESKLKRQVAQATKMQAVGQLAG
                     GVAHDFNNILTAIIGHCDLMLMRHTPGDSDYDDIQQIRANSNRAASLTRQLLAFSRQQ
                     TLRPQVLQLPDVVSDVFNLLKRLLGETVTLNVKHGRNLGPVRADPGQLEQVIVNLAVN
                     ARDAMPDGGTLTLQTFAVAAADVRRLKSEIMPIVDYTALSITDTGTGIPPDVLPKIFE
                     PFFTTKEVGKGTGLGLSTVYGIVKQSNGFIFADSVLGEGTTFVIYLPVHKVEVQAEVA
                     PAQPRERPTELWGSGNILLVEDEAMVRAVAERALTRQGYKVMTASNGEDALECLEGGE
                     KFDLLISDVVMPTMDGPTLVRHAREKYPDLPILFMSGYAEEQLRKSIDIERVAFLPKP
                     FSVQQLAEAARAALTAK"
     gene            complement(2625..>3190)
                     /locus_tag="VE567_00585"
     CDS             complement(2625..>3190)
                     /locus_tag="VE567_00585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYZ47370.1"
                     /translation="TSAQVCSEKVLMRFVPVALAAAIGVAGLSTAVLGQKPDAQLDPR
                     SVALIEQARTAQRAGQLEQANDLLESALAVDPKNRAAFIALAEVAKAQGLPGKAIRFY
                     REALELEPNDVAALAGQGDALVQKGAVVKARENLAKVKRLCGATCPEEAKLAAAIEKG
                     PPPAVMSAQASTKVPAPGAEEATRTPQ"
BASE COUNT          532 a         1105 c         1060 g          493 t
ORIGIN      
        1 tcgaatccgc ctcccgccac gcgcgccagg gcatcgggga ctgcatcgac gcagcccgcc
       61 ggccgatagc cgagcgcgtc gaggaaatcc tcgagcatca tcgagatcaa cggctcgtcc
      121 tcgacgatta aaatggcagg ccccacgctc acaaacggtt cgatagcgga accaatcgct
      181 taaatgcaaa gggaaagtca tttcgccgtc aaagcggcac gggcagcctc cgccagctgc
      241 tggacggaga aaggcttggg caggaacgcg acgcgttcga tgtcgatcga cttgcgcaat
      301 tgctcttcgg catagccgga catgaacagg atcggcaggt cgggatattt ctcgcgggcg
      361 tggcggacga gcgtgggccc gtccatcgtg ggcatcacca cgtcggagat gagcaggtcg
      421 aatttctcgc ccccctccag gcattcgagc gcatcctcgc cgttgctggc ggtcatcacc
      481 ttatagccct ggcgggtcag cgcgcgctcg gcgacggcgc ggaccatcgc ttcgtcctcg
      541 accagcagga tattgccgct gccccagagc tccgtcggcc gctcgcgcgg ctgggcgggg
      601 gcgacctcgg cctggacctc gaccttgtgc acgggcaggt agatgacgaa ggtcgtcccc
      661 tcccccagca ccgaatcggc gaagatgaag ccgttcgatt gcttgacgat gccatagacc
      721 gtggagaggc cgagcccggt gcctttgccg acttccttgg tcgtgaagaa gggctcgaag
      781 atcttgggca gcacgtcggg cggaatgccg gtgccggtgt cggttatgct gagcgccgta
      841 tagtcgacga tcggcatgat ctcgctcttc aaacgccgca cgtccgcggc ggcgaccgcg
      901 aaggtctgga gcgtcagcgt gccgccatcg ggcatcgcat cgcgcgcatt gaccgcgagg
      961 ttgacgatca cttgctcgag ctggcccgga tcggcgcgga ccgggcccag attgcgcccg
     1021 tgcttgacgt tcagcgtgac cgtctcgcca agcaggcgct tgagcaggtt gaagacgtcg
     1081 gagaccacgt ccggaagctg gagcacctgc gggcgcagcg tctgctggcg cgagaaagcg
     1141 agcaactgcc gggtaaggct ggccgcgcgg ttggagttgg cgcggatctg ctggatatcg
     1201 tcatagtcgc tgtcgcccgg cgtgtggcgc atcagcatca agtcgcaatg gccgatgatc
     1261 gcggtgagga tattgttgaa atcgtgcgcc acgccgccgg caagctggcc cacggcctgc
     1321 attttggtcg cctgcgcgac ctggcgcttg agcttcgatt cctccgcatt gtccttgagc
     1381 gagagcagca ctgccgcttc gccaaggccg cgcgcgccgg cgatcgagag agcgaccggc
     1441 tcctccggcc gcgcctgaag ccgcaccgca atgtcgcccg acatcgccgg gccggccgcg
     1501 aaccgccgca ccgtatcggc caccgtggcc ttgtcctcgc gcaccaccag gtcgcttgga
     1561 taaacgggct cggctcccgg ctcgacgccc gcgacacgcg cgaacgcttc gttcaggaac
     1621 aggaaacggc cgtcgcgatc ggcgagcgca aagcccaaag gcagcatcgc cagcaaggtt
     1681 tggatgtggt tcgaggcgct gccttcgccg agacgcggcg cgctatcgtc gtcgatcagg
     1741 aagacaagcg tcgagccggt gcgctcgtcg ggatcgagcg gcacctggat cagccgcacc
     1801 ggcccgccgg cgggcccttc ccgctcgaac cggatcgtgc cgcgcgaatc gacggtcagc
     1861 atggcggcca ggtcacgccc gtcgatcgcg gcgtctgcag aaccggtggc gcgcaaggca
     1921 aaggcccgat tgccggcccg aatccgcgcg tcggcgccga tcaggaccgt catgatccca
     1981 gcctcgccca gccgctcgcc gccgcccgac ccgatcagcc gccgcgcctc gttgagcatg
     2041 tcgaggctgg caagcggccg gaagcgccag accagatggt cttcggcggc gccgatgcgg
     2101 acgacatcga ccgagacagg acctgcctcg cgctgcaacc gctcgatgcg cgccttgcct
     2161 tcccgccagg cccgctcctc ggccattcgc aagcggccgg cctcccgctc cgggaccggc
     2221 agcgcggtcg gcgggacgaa gccgccgaac cagtcgccat aaagaccatt ggcgcagatc
     2281 agcacgccat cccgccccgt gagcgccacc gcggtggact cgctttcgat cgccgccgcc
     2341 gtcagcgccc aatcatgaac gcgcgcttcg accactgccg gcgaagcgct gcgtcgcgtg
     2401 aacaggaaga gcgctccgac cgctagcaac gctgccccga agccgagcgc gagcgccccg
     2461 ctgccgagca tgacgaaaac aagcgcgccg gtggcgagcg caccgccgcc cacgatccag
     2521 gcagcggcgc ccagccgctc ggcggaggcg tccgcagcgg cggcgctcaa caggggcgga
     2581 tgcgcgcgcg tggccatcgc cgtccggatc gcttgctcga cagcttattg cggcgtgcgg
     2641 gtcgcctctt cggcacccgg tgcgggcacc ttggtggacg cctgcgccga catcaccgcg
     2701 ggcggcggcc ccttctcgat cgccgcggcc agcttcgctt cctcggggca tgtcgccccg
     2761 cacaggcgct tcaccttggc gagattttcg cgggccttca cgaccgcgcc tttctggacc
     2821 agcgcatcgc cctggccggc gagcgctgcg acgtcgttgg gctcaagctc taacgcctcg
     2881 cggtagaagc ggatcgcctt gcccggcagg ccctgcgcct tggcgacttc ggccagcgcg
     2941 ataaaggccg cgcggttctt gggatcgacc gccagcgcgc tttccagcag atcattggcc
     3001 tgttcaagct ggccggcacg ctgggcggtg cgggcctgtt cgatcagggc gaccgagcgg
     3061 ggatcgagct gcgcgtccgg cttctgcccc agcacggccg tggacaaacc ggcgacgccg
     3121 atagcggcgg caagagcaac aggcacgaaa cgcataagga ctttctccga acaaacctga
     3181 gcgcttgtta
//
LOCUS       DASQVK010000027         2079 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_223154,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000027 DASQVK010000000
VERSION     DASQVK010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2079)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2079)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2079
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223154"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..183)
                     /locus_tag="VE567_00590"
     CDS             complement(<1..183)
                     /locus_tag="VE567_00590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HYZ47371.1"
                     /translation="MTRTDALKAVIASLEDELAALKRFDIEALAAATAEKESRIGTLA
                     ARNDNPLSAEERALAEE"
     gene            complement(180..470)
                     /gene="flgM"
                     /locus_tag="VE567_00595"
     CDS             complement(180..470)
                     /gene="flgM"
                     /locus_tag="VE567_00595"
                     /inference="COORDINATES: protein motif:HMM:TIGR03824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HYZ47372.1"
                     /translation="MIDPIGVAPGIVQGGRVDGEGTAKIVPLNPVPAANSVAVAETSV
                     RETAKALAAQPPVDAERVHEIKRALQEGRYPLLPAKIADRLIAAQLKWAAKK"
     gene            complement(549..1028)
                     /locus_tag="VE567_00600"
     CDS             complement(549..1028)
                     /locus_tag="VE567_00600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella basal body P-ring formation protein
                     FlgA"
                     /protein_id="HYZ47373.1"
                     /translation="MISLLLLTAAPAATDLALLDRAAEIFAGARLGEPGGPVAPIDRR
                     LHLAACGESPEFTWRTDAHDAIVIRCPDANGWRIFVSVKAQPATMQPAAIKAEPVIRR
                     GDPVTIEAGQSGFAVSTDGVAMGDAAPGARLQIKVEGARAPVQAIAVAAGKATLPGW"
     gene            complement(1041..1532)
                     /locus_tag="VE567_00605"
     CDS             complement(1041..1532)
                     /locus_tag="VE567_00605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010405290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HYZ47374.1"
                     /translation="MRLGPAPHARPLWLITLADLSLLLVGFFVFLQATAHKPQAQQAA
                     IEAGIRHAFGGEATPRIAVDANEIDGFAPGSAALPGSFQLASTWAPEALADPRTRLVV
                     TGYADGSTTDRLDGSALALAGLRADAVSAALAKVVPAERLRLGAAVAPGARRVTLTIS
                     YDP"
     gene            complement(1532..>2079)
                     /locus_tag="VE567_00610"
     CDS             complement(1532..>2079)
                     /locus_tag="VE567_00610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HYZ47375.1"
                     /translation="NAARALPVLVRKPFDFGPARAELARAERVATAKSLLAIDSHLLR
                     DPDVAEGVEAVAAGALPDQVEQLLARLREERLERHAIVQEFWSAAAEAAPAMGMVGTL
                     FGLVRMFRSMNDPATIGAAMAVALLATLYGALFANLVAVPIAARLRRLSHAEDDERRA
                     LIRPFRAFAAREAPSKRSRAA"
BASE COUNT          329 a          713 c          715 g          322 t
ORIGIN      
        1 ttcctcggca agggcgcgtt cctctgccga cagcggattg tcgttgcgtg cggcaagcgt
       61 gccgatccgg ctttcctttt cggctgtggc ggcggccagc gcctcgatgt cgaagcgttt
      121 cagtgcggcc aactcgtcct cgagtgaggc aatgaccgct ttcagggcat cggttcgcgt
      181 catttctttg cggcccattt cagttgcgcc gcgatcagcc gatccgcgat cttggccgga
      241 agcagcggat agcggccctc ctggagcgct cgcttgatct cgtgcacgcg ctccgcgtcc
      301 accggcggct gtgcggccag cgccttggcg gtctctcgca cgctggtttc cgcgaccgcg
      361 accgaattcg ccgccgggac cgggttcaag ggcacgattt tggctgtgcc ctcgccatcg
      421 actcgtccgc cttggacaat gccgggcgct acgccgatcg gatcaatcat gcccgcatcc
      481 tttcctggct agagggggct tcaagccaat tgaacggcag gttgcgcggc ggctttaata
      541 agagtctgtc accaccccgg cagcgtggcc ttgccggcag cgaccgcgat cgcttgcacc
      601 ggcgcgcgcg cgccttcgac cttgatctgc aggcgcgcgc ccggcgcggc atcgcccatc
      661 gccactccgt cggtcgaaac cgcaaaaccg ctttggccgg cttcgatcgt gaccggatcg
      721 ccgcgccgga ttaccggctc ggccttgatc gcggcaggtt gcatggtggc gggctgggct
      781 ttcaccgaca cgaaaatgcg ccagccattc gcgtccgggc agcggatcac gatcgcgtca
      841 tgagcatcgg tgcgccaggt gaattcgggg ctttcgccac aagcggcgag atgcagccgg
      901 cggtcgatcg gcgcgaccgg cccgcccggc tcgccaagcc gcgcgccggc aaagatttcg
      961 gcggcgcggt ccagcagcgc cagatccgtc gccgcaggcg cggccgtaag caggagaagg
     1021 gagatcatcg gttcgactcc tcagggatcg taggaaatgg tgagtgtgac gcgccgcgcc
     1081 ccgggcgcga ctgccgcccc caggcgcaag cgctcggccg gaacgacctt ggccagcgcc
     1141 gccgaaacgg cgtcggcgcg aaggcccgcg agcgcaagcg cgctgccgtc aagccggtcg
     1201 gtcgtcgaac cgtcggcata gccggtgacg accagccgcg tccgcgggtc ggccagcgct
     1261 tcaggcgccc aggtcgaagc aagctgaaag ctgccgggaa gcgccgcgct gccgggcgcg
     1321 aagccgtcga tctcattcgc atcaacggct atgcgtgggg tcgcttcgcc accaaaggcg
     1381 tggcggatgc ccgcttcgat cgcagcctgc tgcgcttgcg gcttatgtgc agtcgcctgc
     1441 aaaaacacga agaagccgac cagcagcagc gacaggtcag caagcgtgat cagccagagc
     1501 ggccgtgcgt ggggagcggg accaaggcgc atcaggcggc gcggctccgt ttggaaggcg
     1561 cctcgcgcgc ggcaaaggcg cggaacggcc tgatgagcgc gcgccgctca tcgtcttcgg
     1621 cgtgcgacag gcggcgcagc ctggcggcga tcggcaccgc aacgagattg gcgaacagcg
     1681 ccccatagag cgtcgcgagc agggcgacag ccatcgccgc gccgatggtt gccggatcgt
     1741 tcatcgagcg gaacatgcgc accaggccga acagcgtgcc gaccatgccc atcgccggcg
     1801 cagcttcggc ggcggccgac cagaattctt gcacgatggc gtgccgctcc aaccgctcct
     1861 cccggagccg cgcgagcaac tgctcgacct gatcgggcaa ggcgcccgcc gcgactgcct
     1921 cgactccctc cgccacatcg ggatcgcgca gcaggtgcga atcgatcgcg agcaggcttt
     1981 tcgcggtggc cacccgttcg gcgcgggcga gctcggcgcg cgcggggccg aagtcgaagg
     2041 gcttgcgcac cagcacggga agagcccggg cggcgttca
//
LOCUS       DASQVK010000028         6995 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_223169,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000028 DASQVK010000000
VERSION     DASQVK010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6995)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6995)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6995
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223169"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1382)
                     /locus_tag="VE567_00615"
     CDS             complement(<1..1382)
                     /locus_tag="VE567_00615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HYZ47376.1"
                     /translation="MTPLPYPALHASHAGIWIAAPDGEARAVGRGEAIARASETPMIL
                     LNAPLVSARLGYPELSGLDLLELFAFVHPARFAVPTPKGLARAIGLAPPADDASAAAF
                     LLRAAATLLARMEAPDWHEREGAWTSAQSLGRLRWPWAAAVARVVKRPERQERWLFAR
                     LPEWEEKPPRPAPRTIHVPPGAAVDRLDELTGHGSEERPGQRAYAEAAAAAFGPRASP
                     DSPTLVLAEAGTGIGKTLGYLAPASLWAREAEGAVWVSTFTKAFQRQLDREGEKLFPD
                     PRERGEKMVVRKGRENYLCLLNLEDALQGGFAGRAAILAQLVARWAGYSKDGDMVGGD
                     LPGWLPTLFRRNGSTALTDRRGECVFAGCPHYRKCFIERAARASADADIVVANHALVM
                     VNAARGRETASRPSRIVFDEGHHLFDAADSMFSTALTGQEAIELRRWIAGPEGSSRGR
                     RRGLAARLSDV"
     gene            1530..1682
                     /locus_tag="VE567_00620"
     CDS             1530..1682
                     /locus_tag="VE567_00620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47377.1"
                     /translation="MLILALVFFMLVAVAALCAVQLTRTAPARDVAPMKVALERRLRE
                     GGELRF"
     gene            complement(1702..2118)
                     /locus_tag="VE567_00625"
     CDS             complement(1702..2118)
                     /locus_tag="VE567_00625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47378.1"
                     /translation="MIKLTTLSLALAIAAPAVAQPRPRWIAVGTGAGAGEIEIDRASL
                     NWRPVQRAWWRIAYAPAKPDGTVEERHLELIDCGDGNSAVIETVSFDAAGRMIAEQRD
                     GEELARQRLGPPTPGTTGETIVEQACRLRPPPPRRH"
     gene            2269..2466
                     /locus_tag="VE567_00630"
     CDS             2269..2466
                     /locus_tag="VE567_00630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47379.1"
                     /translation="MVEYKLYCLDRNGRILRRHEIEASDDGIALDEALKFHPEMAREL
                     WCGTRKVGVLPPSDEPAGRAA"
     gene            complement(2537..2896)
                     /locus_tag="VE567_00635"
     CDS             complement(2537..2896)
                     /locus_tag="VE567_00635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HYZ47380.1"
                     /translation="MAETPLFDVGAVRALLVAAARERRPVSYSELLACLGHRFTRPKM
                     RALCKVLGAVDEAGAAAGEPELAVLVVRESDGLPGQGWWVECAARLGHNGDWTGPEAR
                     ALIRELQGQVFDHWSTR"
     gene            complement(2902..3279)
                     /locus_tag="VE567_00640"
     CDS             complement(2902..3279)
                     /locus_tag="VE567_00640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HYZ47381.1"
                     /translation="MPIDAREPYDPNNIFARILREEIPCRKVYEDEHALAFHDINPQA
                     PTHILVVPKGAYVSWDDFSARASEAEIAGFVRAVGHVAREAGLVETGYRLLANTGLNA
                     HQEVPHLHVHIFAGRSLGPMLAR"
     gene            complement(3296..3706)
                     /locus_tag="VE567_00645"
     CDS             complement(3296..3706)
                     /locus_tag="VE567_00645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010336658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low affinity iron permease family protein"
                     /protein_id="HYZ47382.1"
                     /translation="MDRIFTTISTRIANASGQPATFAISVLLILVWAATGPFFHYSDT
                     WQLIVNTSTTIITFLMVFVIQNSQNRDAAAMQAKLDEIIRAVEAAREQFIGIEHLTDS
                     EIAQIREGLEREVGQAQGKPATADDSVERLLERR"
     gene            complement(3767..5248)
                     /locus_tag="VE567_00650"
     CDS             complement(3767..5248)
                     /locus_tag="VE567_00650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HYZ47383.1"
                     /translation="MTDLRDHALQSKAWPFEEARKLLKRYPEGQAPAKDYVLFETGYG
                     PSGLPHIGTFNEVLRTTMVRNAFHALSDLPTKLIAFSDDMDGLRKVPDNVPNQAMLRE
                     FLDRFGFDYEFASSTDYYASGRFDPILRTVLERYQAILDVMLPTLRAERRATYSPVLP
                     VSPKSGIVLQVPVEVVDPALGLIRFEDEGETIEQSVFGGLAKLQWKVDWAARWVALDV
                     DYEMAGKDLIDSVIQSGKIARVLGGRPPEGFNYEMFLDEKGEKISKSKGNGLSLEQWL
                     TYGTPESLAFYAYREPKKAKQLHMGVIPRAVDEYWQFRGNYAGQPVEQKLGNPVHHIH
                     DGRVPAEPLPVTFGLLLNLVGVMGADATKEQVWGYLKNYVEDASPERYPELDDLIGYA
                     LAYNRDFVAPTLKRRKPEGVEIPALERLDRELAALPTDARAEDIQNIVYAIGNEGGFD
                     NLRDWFKALYETLLGSSQGPRMGSFIALYGIDNTRKLIADALS"
     gene            complement(5383..6009)
                     /locus_tag="VE567_00655"
     CDS             complement(5383..6009)
                     /locus_tag="VE567_00655"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HYZ47384.1"
                     /translation="MPTPRNYRGKSPQERKEARRLSILQAAMSVYAEIGYRAATVQAI
                     CDAAGLTKRYFYESYRDSSELLEACFRVSVGELIDELRAYAGEQENADPRARTRAILV
                     RYFEALRDDPGPSRLFLVDAEGVSPGVTKAMHDAERAMADLLVPVELFPEDDARVSLF
                     RLGAVSGIARISSLWIAGNCALPVDDVVESGLSLFGSVLQPPSTAARA"
     gene            6158..6955
                     /locus_tag="VE567_00660"
     CDS             6158..6955
                     /locus_tag="VE567_00660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019367649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Coq4 family protein"
                     /protein_id="HYZ47385.1"
                     /translation="MKSQPPLLDDLRYVVARRDWGAALTALRKLMANKDDTEQVFHIM
                     DALNADEEVRCYRKLVSTMKGGEIAYRRPELAVRLMDRDWLDKFAPDTVGGSYREFLD
                     STGYSAQGLVEISKVSPSQGEAEHPYAWMGRRTRDVHDIWHVLTGYKADEHLGEAALV
                     AFSFAQLGGWGWAAIAIATWIETLSAGLSNPQGQAIWEGYRLGKKAAWLLGEDYEHLL
                     GERITDARRRLRIGVPERYLAIPAEIRGASLGRQPAMGRPAELLHHA"
BASE COUNT         1204 a         2331 c         2274 g         1186 t
ORIGIN      
        1 acgtccgaca ggcgcgcggc caagccacgg cggcggccgc gcgacgagcc ttccggcccg
       61 gcgatccagc gcctgagctc gatggcttcc tggccggtca acgcagtcga gaacatcgaa
      121 tccgccgcgt cgaagagatg atggccttcg tcgaagacga ttcggctcgg ccggctggcc
      181 gtctcacggc cgcgcgcggc attgaccatc accagcgcgt ggttggcgac cacgatgtcg
      241 gcatcggcgc tggcgcgcgc ggcgcgctcg atgaagcatt tgcggtagtg cggacagccg
      301 gcgaacacgc attcgcctcg ccggtcggtg agcgcggtcg agccgttgcg gcggaacaaa
      361 gtcggcagcc agccgggcag gtcgccgccc accatgtcgc cgtccttcga atagccagcc
      421 cagcgcgcga ccaattgcgc aaggatcgcg gcacggccgg caaagccgcc ctgcagtgcg
      481 tcttccaggt tcagcaggca aagataattc tcccgcccct tgcgcacgac cattttctcg
      541 ccgcgctcgc gcggatcggg aaagagcttc tcgccttcgc ggtcgagctg gcgctggaac
      601 gccttggtga aggtcgagac ccagaccgcg ccttccgcct cgcgcgccca gagcgaagcc
      661 ggagcgagat agcccagggt cttgccgatg cccgtaccgg cctcggccag caccagagtc
      721 ggcgaatccg gcgaggcgcg cggaccgaag gcggcggccg cggcttcggc ataagcgcgc
      781 tggccggggc gctcctcgga gccatggccg gtgagttcgt ccagccggtc gaccgcggcg
      841 ccgggcggaa catggatggt gcgcggggcg ggacgcggcg gcttctcctc ccattcgggc
      901 aggcgcgcga acagccagcg ctcctgccgc tcggggcgct tcaccacgcg cgccaccgcc
      961 gccgcccagg gccagcgcag ccggccgagc gattgtgcgg acgtccaggc tccctcccgc
     1021 tcatgccaat ccggcgcttc cattcgcgcg agcaaagtcg cggcggcgcg gagcaggaag
     1081 gcggcggcgc tcgcatcgtc ggcaggcggg gcaaggccga tcgcgcgcgc gaggcccttc
     1141 ggcgtcggca ccgcgaagcg cgccggatgc acgaaggcaa acagctccag cagatcgagg
     1201 cccgacagtt cgggatagcc gagccgggcg gagacgagcg gcgcattcag aaggatcatc
     1261 ggcgtttcgg acgcccgggc gatcgcttcg ccgcgcccga ccgcacgcgc ctctccgtca
     1321 ggcgcggcga tccagatgcc ggcatgactc gcgtggagcg caggataggg gagcggcgtc
     1381 accgcgcgaa aatggagcag gcggaacaga ttggcaacgg gctgaggtta actacctatt
     1441 cgccttgttg ccggcgcgga gcggcgtagc aggggcccgg gcggaaccaa ttcgcaccag
     1501 aaacgatttg ccgcccggga gtgctgccga tgctgattct tgcgcttgtc ttcttcatgc
     1561 tcgtcgcggt ggcggcgctc tgtgcggtgc aactgacccg cacggccccg gcacgggacg
     1621 tcgcgccgat gaaggtcgcg ctcgaacggc ggctgcgcga aggcggcgaa ctccgcttct
     1681 agctccggat tgatcgcagg atcagtgccg gcgcggcggc ggcggacgca ggcggcacgc
     1741 ctgctcgacg atcgtttcgc ccgtggtccc cggggttggc ggccctagcc tctgccgcgc
     1801 gagttcttcg ccgtcgcgct gctcggcgat cattcgtcct gccgcgtcga acgagacggt
     1861 ttcgatgacc gccgagttgc cgtcgccgca gtcgatcagc tccagatgcc gttcctctac
     1921 agtgccgtcg ggcttggccg gcgcataggc gatcctccac caggcacgct ggaccggtcg
     1981 ccaattgagc gaggcgcggt cgatctcgat ctctcccgcg cccgcgccgg tgccaaccgc
     2041 gatccagcgg ggtcggggct gggcaacagc cggcgcggca atcgcaagcg cgaggctgag
     2101 agtcgtcagc ttgatcacgg agagtcctcc ctgtttgtcg ccctaaatgc ccggccccgc
     2161 gtcgcgcgct atgctttaca acacagcgac gccgctatgt cggctggaag acagacgaag
     2221 gcccgccaac ctgctagctc tcgactcgca gccagagggg gttgggccat ggtcgagtat
     2281 aagctttatt gtctcgaccg gaatggccgc attttgcgca ggcacgaaat cgaggcgagc
     2341 gacgacggca tcgcgctcga cgaagcgctc aaattccacc cggaaatggc gcgggaactc
     2401 tggtgcggca cccgcaaggt cggcgtgctc cccccgagcg acgagcccgc ggggcgcgcc
     2461 gcctagcgcc caaagggcgc gcggccggca atcgtgcgcc ttcgccataa gctgcgcggc
     2521 gacgcctcga cgcagctcat cgcgtgctcc aatggtcgaa aacctgcccc tgcaactcgc
     2581 ggatcagtgc ccgtgcctcg ggtccggtcc agtcgccgtt atggccgagc cgagccgcgc
     2641 actcgaccca ccagccctgg cccggcagcc cgtccgattc ccgcacgacg agcaccgcca
     2701 gctccggctc gccggcagcg gcgcccgcct cgtccaccgc gcccagcact ttgcacagcg
     2761 cgcgcatctt gggtcgggtg aagcggtggc cgaggcaggc cagcagttcc gaatagctga
     2821 ccggccgccg ctcgcgcgcc gccgcgacga gcagcgcccg caccgcgccg acgtcgaaca
     2881 gcggcgtctc ggccatgccg gctagcgcgc cagcatcgga ccgagcgaac gccccgcgaa
     2941 gatgtggaca tggagatgcg gcacttcctg gtgcgcgttc aggcccgtat tggcgagcag
     3001 ccggtagccg gtttcgacca gccccgcctc gcgcgcgaca tggcccaccg cgcgcacgaa
     3061 gccggcgatc tccgcctcgc tcgcccgcgc cgaaaaatcg tcccacgaca cataggcacc
     3121 cttgggcacg acaagaatat gcgtgggcgc ctgcggattg atgtcgtgga aggcgagcgc
     3181 atgctcgtcc tcatagactt tgcggcacgg aatctcctcg cgcaggatcc gcgcgaagat
     3241 gttgttcgga tcataaggct cgcgggcatc gatcggcatg ccccttcttt acccgtcagc
     3301 gccgctccag caagcgttcg acgctgtcgt cggcggtggc gggcttgccc tgggcctgac
     3361 cgacttccct ttcgagccct tcgcgaatct gcgcgatctc gctgtcggtc agatgctcga
     3421 tgccgatgaa ttgctcgcgc gcggcctcga ccgcgcggat gatctcgtcg agcttggcct
     3481 gcatcgccgc ggcgtcccgg ttctggctgt tctggatcac gaacaccatc aggaaagtga
     3541 tgatcgtcgt gctcgtgttc acgatgagct gccacgtgtc cgaataatgg aagaacggcc
     3601 cggttgcggc ccagaccagg atcagcagca cggagatcgc gaaggtcgcg ggctggccgc
     3661 tcgcgttcgc gatccgcgtc gagatcgtcg tgaaaatcct gtccattcgc atcgactccc
     3721 ttggggtcgt aacggacatg gaacgcaccg ggcgcgaaac ggtgccttag ctgagcgcgt
     3781 cggcgatcag cttgcgggtg ttgtcgatcc cgtagagcgc gatgaagctg cccatgcgcg
     3841 ggccctggga cgagccgagg agcgtctcgt acagtgcctt gaaccagtcg cgcagattgt
     3901 cgaacccgcc ctcgttgccg atcgcataga cgatgttctg gatatcctcc gccctggcgt
     3961 cggtgggcag cgccgcgagc tcgcggtcga gccgctcgag cgccgggatt tcgacgcctt
     4021 cgggcttgcg gcgcttgagc gtcggcgcga cgaaatcgcg gttataggcc agcgcatagc
     4081 cgatcaggtc gtcgagctcc ggatagcgct ccggcgaggc atcctcgaca taattcttaa
     4141 gatagcccca gacctgctcc ttggttgcat cggcgcccat cacgccgacc aggttcagca
     4201 gcagcccgaa cgtcaccggc agcggctcgg ccggaacccg cccgtcatgg atatgatgca
     4261 ccggattgcc gagcttctgc tcgaccggct ggcccgcata attgccgcgg aactgccaat
     4321 attcgtccac tgcgcgcggg atcacgccca tatggagctg cttggccttt ttgggctcac
     4381 gataggcata aaaggccagg ctctccggcg tgccataggt cagccattgc tcgaggctca
     4441 ggccattgcc cttggacttg gagattttct cgcccttctc gtcgaggaac atctcgtagt
     4501 tgaagccttc gggcgggcgg ccgccgagca cccgcgcgat ctttcccgac tggatcaccg
     4561 aatcgatcaa atccttgccc gccatttcat agtcgacgtc cagcgccacc cagcgcgccg
     4621 cccagtccac tttccactgg agcttggcca ggccgccgaa caccgattgc tcgatcgtct
     4681 cgccttcgtc ctcgaagcgg atcaggccta gcgccggatc gacgacctcg accggcactt
     4741 gcagcacgat gccggatttg gggctgaccg gcagcaccgg cgaataggtc gcccgccgct
     4801 cggcacgcag cgtcggcagc atgacgtcca ggatcgcctg atagcgctcc agcaccgtcc
     4861 gcaggatcgg atcgaagcgg ccggaggcgt aatagtcggt cgaggacgcg aactcgtaat
     4921 cgaacccgaa ccggtcgagg aattcgcgca gcatcgcctg gttcggcaca ttgtccggca
     4981 ccttgcgcag cccgtccata tcgtcgctga aggcgatcag cttggtcggc aggtcggaga
     5041 gcgcatggaa ggcattgcgc accatcgtcg tgcgcagcac ttcgttgaaa gtgccgatat
     5101 gcggcaggcc cgaggggcca tagccggttt cgaacagcac atagtctttc gccggcgcct
     5161 gcccctcggg atagcgcttc aaaagcttgc gcgcttcctc gaatggccag gccttggact
     5221 gcagtgcgtg gtcgcgaaga tcggtcatgg cgagcgcctt tgcccatttg ggccgcgccc
     5281 ggcaaatttg gaggctccgg ccgggcgggt ccttcacacc gtgcctttcc gttcggccgc
     5341 agcgcatcgc ttccgaacat cagggaacgc aagcgcctgt cgctacgcgc gggcagcggt
     5401 ggaagggggc tgcagtacgc tcccgaacag gctgagcccg ctctccacca catcgtcgac
     5461 aggaagggcg caattgccgg cgatccagag cgacgaaatg cgtgcgatgc ccgacaccgc
     5521 cccgaggcgg aacagcgaca cgcgcgcatc atcctcggga aaaagttcta ccggcaccag
     5581 caggtcggcc attgcccgct ccgcatcgtg catagccttt gtcacgcctg ggctcacgcc
     5641 ctccgcatcg accagaaaca gtcgggacgg cccgggatcg tcccgcaatg cctcgaaata
     5701 gcggaccagg atcgctcttg tccgagctcg gggatcggca ttctcctgct cgccggcata
     5761 ggcccgcagc tcgtcgatca actcgccaac cgagaccctg aagcacgctt cgagaagctc
     5821 gctgctatcc ctgtacgatt cgtagaaata tcgcttcgtc aggccagctg cgtcgcagat
     5881 tgcctgcacc gtggccgcgc gataaccgat ctcagcatag accgacatcg cggcttgcag
     5941 gatgctcagt ctcctggcct ccttgcgctc ctgtggcgat tttcctcggt agtttcgcgg
     6001 agttggcatt cggcagttat ggtccctttg gtaaagcggc gactgcctat gtagcactcg
     6061 ggcgaatctt gtcccgcctg tcgaaagcgg cgcttataaa aatgttgaca ccagacggtt
     6121 ccagatgcag catccggaaa cacgttggag agtctgcatg aagagccagc cgcccttgct
     6181 tgatgacctg aggtatgtcg ttgctcgacg cgattggggt gcagcactca cggcgttgcg
     6241 caagctcatg gccaataagg acgacaccga gcaggtcttc catatcatgg atgccctgaa
     6301 cgccgacgaa gaggtgcgct gctaccggaa attggtgagc accatgaagg gaggcgagat
     6361 cgcctatcgt cgccccgagc tcgcggttcg tctgatggac cgtgactggc tcgacaaatt
     6421 cgcgcccgat accgtcggag gcagctaccg cgagttcctg gattccaccg gctattctgc
     6481 acaggggttg gtcgaaatca gcaaggtcag ccccagccag ggcgaggctg aacatcccta
     6541 tgcctggatg ggacggcgaa ctcgcgacgt gcatgacatc tggcacgtgc tgaccggata
     6601 caaggccgac gagcaccttg gcgaggccgc attggtcgct ttctcgttcg cccagctcgg
     6661 cggctgggga tgggcagcga tcgccatcgc gacctggatc gagacgctgt cggctggctt
     6721 gtccaatccc caaggtcagg cgatctggga aggctatcgg cttggcaaga aagcagcttg
     6781 gctgcttggc gaagattacg agcatctcct gggtgagcga attaccgatg ccaggcgccg
     6841 gctcaggatc ggcgtacccg agcgttatct ggcgattccg gccgagattc ggggggctag
     6901 cctgggaagg caaccagcaa tgggccggcc ggcggagttg cttcatcacg cctgagatct
     6961 gccggttcca ggtcgtcgag aaatcacaga agcga
//
LOCUS       DASQVK010000029         3235 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_223273,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000029 DASQVK010000000
VERSION     DASQVK010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3235
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223273"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(14..826)
                     /gene="pstB"
                     /locus_tag="VE567_00665"
     CDS             complement(14..826)
                     /gene="pstB"
                     /locus_tag="VE567_00665"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HYZ47386.1"
                     /translation="MILGEAELNEAPHIEPPPADSLVIETRGLDFYYGSAQALHGVDL
                     GIARNRITALIGPSGCGKSTLLRALNRIYELYPNQRAEGEILLDGETILSPKTDLAAL
                     RARVGMVFQKPTPFPMSIYDNVAFAVRLHQRKTKSELDEIVERSLRRAALWDEVENKL
                     HSSGLGLSGGQQQRLCVARGIAIEPEVLLLDEPASALDPVSTAKLEDTLLQLKKDFTI
                     VIVTHNLQQAARIADYTGFMFMGQLLEFAPTATLFSTPRLVRTRNYVTGRFG"
     gene            complement(823..1665)
                     /gene="pstA"
                     /locus_tag="VE567_00670"
     CDS             complement(823..1665)
                     /gene="pstA"
                     /locus_tag="VE567_00670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HYZ47387.1"
                     /translation="MRTRAVRRKIWNVVFIGATTFATLVALGALFLILWSLLSQGLAG
                     LSPAIFTHDQPPPGSFGGLRNAIVGSLIMCAVGMVIALIVGILAGTWLSEYGGNSRYA
                     QVIRFLNDVLLSAPSILVGLFVYQMLVAPFQGFSGWAGAVALAFLATPIVVRTTEDIL
                     NLQPGALREAGMALGASRSKIIRSVIWRGARAGLVTGGLLGFARISGETAPLLFTSLG
                     NQYLTLNLSQPMAALPTTIFQFALSAYDDWRRLAWAGALLIAVAVLAINIVGRFMARE
                     TRHS"
     gene            complement(1667..2614)
                     /gene="pstC"
                     /locus_tag="VE567_00675"
     CDS             complement(1667..2614)
                     /gene="pstC"
                     /locus_tag="VE567_00675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HYZ47388.1"
                     /translation="MARAAESAGRAVGGRWDELLFRAACFSAATLLMAALGGLVVSLA
                     IGGWPAFKAFGFSFFTTSHWNPVTDVYGAAGPIVGTLVTGILALLFALPLAMGVAVFL
                     TEFCPDRLARPVAIAVELLAGIPSIVYGMWGLFVFAPWFAKHIQGPLAASTDPDSWIG
                     QLVAGVPNGANIFTASVILAIMILPYMAAVFRELFLSVPSQVREAAFGLGSTSFEVTA
                     KVIVPYVRRGAVGVVMLGLGRALGETMAVTFIIGNAHGFPHSLFDSGSTIASTIANEF
                     AEATGALHEASLIALGLVLFLITFSVLAIARALLSAQKI"
     gene            complement(2738..>3235)
                     /locus_tag="VE567_00680"
     CDS             complement(2738..>3235)
                     /locus_tag="VE567_00680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016746644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HYZ47389.1"
                     /translation="GASDSVQWPTGLGGKGNDGVAAFVKQTVGAIGYVEYAYAKQNGS
                     AYVQVRNKAGSFVAPDAASFAAAAEGADWAHAPGNYLLLLDQPGANAWPITGATFILV
                     YKDQPDPKRVQAVLKFFDWAYTKGDQAAATLDYVPLPASVKDMVRKQWASEITSGGKP
                     VWPAK"
BASE COUNT          614 a         1074 c         1068 g          479 t
ORIGIN      
        1 gccgcccctc ctgtcagccg aagcgtccgg tcacgtaatt ccgcgtgcgc acaaggcgcg
       61 gcgtcgaaaa caaggtcgcg gtcggcgcga attcgagcag ctggcccatg aacatgaagc
      121 cggtatagtc ggcaatgcgc gcggcctgct gcagattgtg agtcacgatc acgatcgtga
      181 agtccttctt cagctgcagc agcgtgtctt cgagcttggc ggtcgagacg gggtcgagcg
      241 cggaggccgg ctcgtcgagc agcagcactt cgggctcgat cgcaatgccg cgcgcgacgc
      301 acagccgctg ctgctgcccg ccggacaggc caaggcccga gctgtgcagc ttattctcca
      361 cctcatccca caaggcggcg cggcgcagcg agcgctcgac gatttcgtcc agctcgcttt
      421 tggtcttgcg ctggtgaagg cggacggcga acgcgacatt gtcgtagatc gacatcggga
      481 acggcgtcgg cttctggaac accatgccga cgcgcgcgcg cagcgccgcg aggtcggtct
      541 tgggcgaaag gatggtttcg ccgtccagca ggatttcgcc ttccgcgcgc tggtttggat
      601 acagctcgta aatccggttg agcgcgcgaa gcagggtcga tttgccgcac cccgacggac
      661 cgatcagggc cgtgatccga ttgcgcgcga tgccgagatc gacgccgtgc agcgcctggg
      721 cgctcccata atagaagtcg agcccgcgcg tctcgatcac gagcgaatcc gcgggcggcg
      781 gctcgatgtg cggcgcttcg ttcagttcgg cttccccgag gatcatgagt gacgagtctc
      841 ccgggccatg aaccggccca caatattgat ggcgagcacc gcgacggcga tcagcagcgc
      901 gcccgcccag gcaaggcggc gccaatcgtc ataggcgctg agcgcgaact gaaaaatggt
      961 ggtcggcagt gccgccatag gctgcgacag gttcagcgtc agatactggt tgccgagcga
     1021 ggtgaacagc aagggcgcgg tctcgccgct gatccgcgcg aagccgagca ggccgccggt
     1081 caccagcccc gcccgcgcgc cgcgccagat gaccgagcgg atgatcttgg accgcgacgc
     1141 cccgagcgcc atgcctgctt cgcgcagcgc gcccggctgc aggttcagaa tgtcctcggt
     1201 ggtccgcacc acgatcggcg tcgcgagaaa ggccagcgcc accgcgccgg cccagccgga
     1261 aaagccctgg aatggcgcca ccagcatctg atagacgaac aggccgacca ggatcgacgg
     1321 ggcggagagc agcacgtcgt tcaggaaccg gatcacctgc gcgtagcggc tgttcccgcc
     1381 atattcgctt agccaggtgc ctgccagaat gccgacgatc agcgcgatca ccatgccgac
     1441 ggcacacatg atcagcgatc cgacgatcgc gttgcgaagc cccccgaacg agccgggcgg
     1501 cggctgatcg tgcgtgaaga tcgccggcga caggccggcc aggccctggc tcagcagcga
     1561 ccagaggatg aggaacagcg cgcccagcgc gacgagcgtc gcgaacgtgg tcgcgccgat
     1621 gaaaacgacg ttccagatct tgcggcggac ggcccgggtg cgcatctcag atcttctgcg
     1681 cagacagcag ggcgcgcgcg atcgcgagca ccgagaaagt gatgaggaac agcaccaggc
     1741 cgagcgcgat cagcgaggct tcgtgcagcg cgccggtcgc ctcggcgaac tcgttggcga
     1801 tggtcgaggc gatggtcgag ccggaatcga acagcgagtg cgggaagccg tgcgcattgc
     1861 cgatgatgaa ggtcaccgcc atggtctcgc cgagcgcacg gccgagcccc agcatcacca
     1921 cgcccacggc gccccgccgg acatagggga cgatcacttt cgccgtgact tcgaagctgg
     1981 tcgagccgag tccgaaggcc gcttcgcgca cttgcgaagg cacggagagg aacagttcgc
     2041 ggaaaacggc agccatataa ggcaggatca tgatcgcaag gatcacggac gcggtgaaga
     2101 tattggcccc gttgggaacg ccggcgacca gttggccgat ccagctgtcg ggatctgtgc
     2161 tcgcggcgag cggcccctgg atgtgcttgg cgaaccaggg ggcgaacacg aacaaacccc
     2221 acatgccata gacgatcgag ggaatgccgg cgagcagctc caccgcgatc gcgaccggcc
     2281 gcgccagccg gtccggacag aattcggtca ggaacaccgc cacgcccatc gccagcggca
     2341 gcgcgaagag cagcgccaat atgccggtca cgagcgtgcc gacgatcggg cccgcagcgc
     2401 catagacgtc cgtcaccgga ttccagtgcg atgtcgtgaa aaatgaaaat ccgaacgctt
     2461 tgaacgccgg ccagccgccg atcgcgagcg acacgaccaa gccgcccaaa gcggccatca
     2521 acagcgtcgc cgcgctgaag caggcggcgc ggaacagaag ctcgtcccag cgcccgccga
     2581 ccgcccggcc cgcgctttcg gccgctctcg ccaccttatc cctcttttcg atacgaactg
     2641 gccgggctgg ctgcatcgga ccgcccggcg agcccccggc gctaggccgg gaatatgaca
     2701 atcgtgtgac tcgcttcctc gacggaccag cgcgacctta tttggccggc cagaccggct
     2761 tgccgccgga cgtgatctcg ctcgcccatt gcttgcggac catgtccttc acgctcgccg
     2821 gcagcggcac ataatcgagc gtcgcggccg cctggtcgcc cttggtatag gcccagtcga
     2881 agaacttcag cacggcctgg acccgcttcg ggtcgggctg atccttgtaa accaggatga
     2941 aggtcgcgcc ggtgatcggc caggcattgg cgcccggctg atcgagcagc agcagataat
     3001 tgcccggggc atgggcccaa tccgcgcctt cggccgctgc ggcgaaactc gcggcatcgg
     3061 gggcaacgaa ggagccggcc ttgttgcgca cctgcacata ggcagagccg ttctgcttgg
     3121 cataggcata ttcgacatag ccgatcgcgc cgaccgtctg cttgacgaaa gccgcaacgc
     3181 cgtcattgcc cttgccgccg agaccggtcg gccactggac cgagtcgctc gcgcc
//
LOCUS       DASQVK010000030         3214 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_444449,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000030 DASQVK010000000
VERSION     DASQVK010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3214
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_444449"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..450
                     /locus_tag="VE567_00685"
     CDS             <1..450
                     /locus_tag="VE567_00685"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HYZ47390.1"
                     /translation="DTLTPLPNRRFFMRAVERAVAQFGRHGTPAALLFIDMDRLKDIN
                     DTHGHSIGDAALIHTAWVLREKVRSGDLVARIGGDEFGVLLDYADEAAAQEKAAALCQ
                     AVASMPLHGRIAIACSVGVTALRPGDTPEAALARADSDMYERKRRGG"
     gene            complement(466..1758)
                     /locus_tag="VE567_00690"
     CDS             complement(466..1758)
                     /locus_tag="VE567_00690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HYZ47391.1"
                     /translation="MQPLSPFPWLSLAIIFALIVLNGLFAMCELAIVSARKPRLQAMV
                     KIGRAGAATALKLQENPGRLLSTVQIGITLISILTGAFSGAALEVPVGQRLALIGISA
                     HYGFAVTIAVTTYFSLVVGELVPKQFALRAPEPIAAMAAVPMDWFARVTAPLGWLLDR
                     SSALIFRIIGLKRETEQHVTAEELHLIVAEASRSGVIEESERAIISGVVRLADRPVRE
                     VMTPRTAIDWIDIDADEQTLKRRLIETPHTRVPVAEGSVDRIVGVVQSRDVVAALLEG
                     RSLDLRALMRPLLIVPDQVDAMDALETLRSAEVPMVLVHDEYGHLEGLVTPADLFIAI
                     AGHFASDQDVGTDPDVVERDDGSLLVSGSLSADALAERLDITLPEDRDYATAAGFVLA
                     VMRKLPTVGEHFEEQGWRFEVVDMDGRKIDKLLVNCLE"
     gene            complement(1832..>3214)
                     /locus_tag="VE567_00695"
     CDS             complement(1832..>3214)
                     /locus_tag="VE567_00695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010545452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase D family protein"
                     /protein_id="HYZ47392.1"
                     /translation="GPVVTGAFRDWTAKLTVDGLQPGRPYFYRFAANGEVSPVGRTQT
                     LPEGRIPEFRMAVFSCSNLPFGYFNAYAHAADRDDLHLAVHLGDYFYEYKRGDYPSEK
                     QAIAARVVEPANELFQLADYRTRYACYRADPDLQALHARLPMLASWDDHESANDSWEG
                     GAENHNPGEGDWTPRKIAAMQAWREWMPVSDEPWKTYDLGNLGTYFRTETRLLARSKQ
                     DRMEVVLAGPGDPVAKLKAFRDGPWQDPARTMMGSEQEHWLAGELRRSVRSGKKWQIV
                     GVGTIMGNSVTPRAAANWVTPDTPSYVADRMKASLVAASLGLPSNLDNWGGYPAARAR
                     LLRAAQGAGADLVMLAGDSHNAWAYELMQDGKRAGVEFDGHSVTSPGFENSFRQVPPT
                     DVARALVESNPELKWCDTSGRGYMTVTLTPEAATSEWLFVETILGRSPRVARSHRMRA
                     RAGRKALETV"
BASE COUNT          549 a         1110 c         1027 g          528 t
ORIGIN      
        1 gacacgctga cgccgctgcc caatcgccgc ttcttcatgc gcgcggtcga acgcgccgtg
       61 gcccaattcg gccggcacgg cacgcctgcg gccctgctgt tcatcgatat ggaccggctg
      121 aaggacatca acgacaccca cggccacagc atcggtgatg cggccctgat ccacaccgct
      181 tgggtgctgc gcgaaaaggt ccgctcgggc gatctggtcg cgcggatcgg cggcgacgaa
      241 ttcggcgtgc tgctcgatta tgccgacgag gccgcggcgc aggaaaaggc ggcggcgctg
      301 tgccaggcgg tcgcctccat gccgctccac gggcgcatcg cgattgcctg ctcggtcggg
      361 gtcaccgcgc tccgccccgg cgacactccc gaagccgccc tcgcccgcgc cgactcagat
      421 atgtacgagc gcaagcggcg aggcggctaa gaccttcgcg caagatcatt cgaggcaatt
      481 caccagcaat ttgtcgatct tgcggccgtc catatcgacc acttcgaaac gccagccctg
      541 ttcctcgaaa tgctcgccga ccgtcggaag cttgcgcatg acggcgagca cgaagcccgc
      601 cgcggtcgca taatcgcggt cttcaggcag cgtgatgtcg agccgttcgg ccagtgcgtc
      661 ggcggaaagc gacccggaga cgagcaggct gccatcgtcg cgctcgacaa catcggggtc
      721 ggtgcccaca tcctgatccg acgcgaaatg gccggcaatc gcgatgaaca gatcggcggg
      781 cgtcaccagc ccttccagat ggccatattc gtcatgaacg agcaccatcg gcacttcggc
      841 gctgcggagc gtttcgagcg catccatcgc atcgacctgg tccggcacga tcagcagcgg
      901 ccgcatcagc gcgcgcaggt cgagagaccg gccctccagc aacgccgcca cgacatcgcg
      961 gctctgcacg acccccacaa ttcggtcgac cgacccttcg gcgaccggca cgcgcgtgtg
     1021 cggcgtttcg atcagccgcc gtttcagtgt ttgctcatcg gcgtcgatgt cgatccagtc
     1081 gatagcggtg cgcggcgtca tgacttcgcg caccggccgg tcggcgaggc gcaccacgcc
     1141 ggagatgatc gcccgctcgc tttcctcgat gacccccgag cggctggcct ccgccacgat
     1201 cagatgcagt tcctcggcag tcacatgctg ttcggtctcc cgcttcaggc cgatgatgcg
     1261 gaagatgagt gcgctcgagc ggtcgagcag ccagccaagc ggtgccgtca cgcgcgcgaa
     1321 ccaatccatc gggacagccg ccatcgccgc gatcggctca ggcgcgcgca gcgcgaattg
     1381 cttgggcacc agctcgccga cgaccagcga aaaataggtg gtgacggcaa tggtcaccgc
     1441 aaatccgtaa tgcgcggaaa tgccgatcag ggcgagcctc tgccccaccg gcacttcgag
     1501 cgcagcgccg gagaacgcgc cggtcaaaat gctgatgagc gtaatgccga tctgaacggt
     1561 cgaaagcagc cgccctggat tttcctgcag cttgagcgcc gtggccgcgc cggcccggcc
     1621 gatcttcacc atcgcctgca gccggggctt gcgcgcggag acgatcgcca gttcgcacat
     1681 cgcgaacagg ccgttcagca cgatcagcgc gaaaatgatc gcgaggctga gccagggaaa
     1741 gggggaaaga ggctgcatgc cggacgtgta acgtctttag cggcgaaacg tggcggcggg
     1801 caaccactca gcctcattca ggcgaggcgc gtcacaccgt ctccagtgcc ttgcgccctg
     1861 cgcgcgcgcg catccggtgg ctgcgcgcca cccgcggcga gcggccgagg atcgtctcga
     1921 cgaagagcca ttcgctcgtc gcggcctcgg gcgtgagcgt gacggtcata tagccgcggc
     1981 cgctcgtgtc gcaccatttg agctcgggat tgctctcgac cagcgcacgc gcgacatcgg
     2041 tgggcggcac ttgccggaac gaattctcga agcccggcga ggttacgctg tgtccgtcga
     2101 actcgacgcc agcgcgcttg ccgtcctgca tcagctcata ggcccaggca ttatggctgt
     2161 cgccggccag catgaccaga tcggcgcccg cgccttgcgc cgcgcgcagc agccgcgcac
     2221 gcgccgccgg gtaaccgccc caattgtcga gattgctggg cagtcccagc gaggccgcga
     2281 ccaggctcgc cttcatccgg tcggcaacat agctgggcgt atccggcgtg acccagttcg
     2341 ccgccgccct gggcgtgacg ctgttgccca tgatcgtccc gacgccgacg atctgccatt
     2401 tcttgcccga acggaccgac cggcgcagct cgccggccag ccaatgctcc tgctcgctgc
     2461 ccatcatcgt gcgtgccggg tcctgccagg gcccgtcgcg gaaggccttc agcttggcca
     2521 cagggtcgcc aggcccggcc agcacaactt ccatccgatc ctgcttgctg cgcgcgagca
     2581 gccgcgtctc ggtccggaaa taggtgccga gattgcccaa atcataggtt ttccacggct
     2641 cgtcggaaac cggcatccat tcgcgccacg cctgcatcgc ggcgatcttg cgcggcgtcc
     2701 aatcgccctc gccgggattg tggttttcgg caccgccttc ccagctgtcg ttggcgcttt
     2761 cgtgatcgtc ccacgaggcg agcatcggca gccgcgcatg cagggcctgc aagtccggat
     2821 cggcgcggta gcaggcatag cgcgtgcgat agtcggcgag ctgaaacagc tcgttcgcgg
     2881 gctctaccac gcgcgccgcg attgcctgct tctcgctcgg gtaatcgccg cgcttatatt
     2941 cgtagaaata gtcgcccaga tgcaccgcca ggtgcagatc gtcgcgatcg gcggcatgcg
     3001 cataggcgtt gaaatagccg aaaggcaggt ttgagcagga gaataccgcc atccggaatt
     3061 cggggattcg cccctcgggc agcgtctgcg tgcgcccgac cggcgagact tcgccgttcg
     3121 cggcgaagcg gtagaaatag ggccggcccg gctgcagtcc gtcgacggtc agctttgcgg
     3181 tccagtcgcg gaacgcgccc gtcacgaccg ggcc
//
LOCUS       DASQVK010000031         5764 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_2021, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000031 DASQVK010000000
VERSION     DASQVK010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5764
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2021"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..892
                     /locus_tag="VE567_00700"
     CDS             <1..892
                     /locus_tag="VE567_00700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010187747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYZ47393.1"
                     /translation="AEAAAFFGSEAALFLSSGYVANSALLSTLPQSGDHIFYDALIHA
                     SAHEGMRLARCGGTEVPHNDAEGFERAIARWRAAGGDGRPWIAVESLYSMDGDRAPLE
                     ALAAIADRHEAFLLIDEAHATGVFGEGGRGLAAGLEGRENVIVLRTLGKALGCEGALI
                     CCAGVLRDFLVNRARGFIFSTAPSPLMAAVARAAIAIAADADDRRAALRALWTYAAER
                     LVDHGAQATGTQIMPLILADDGLTMAVAGKLQAAGLDVRGIRPPTVAPGTARLRISLT
                     LNVGQADIDALDAALAQALA"
     gene            889..1518
                     /gene="bioD"
                     /locus_tag="VE567_00705"
     CDS             889..1518
                     /gene="bioD"
                     /locus_tag="VE567_00705"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004141 - dethiobiotin synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HYZ47394.1"
                     /translation="MTRRIIVTGTDTDVGKTVFAAALTAAIDGCYWKPVQAGLDQGGD
                     SDVVAALAGLDRARVFPEAYRLPTPCSPHRAAEIGGVTIDPARLTPPKSDHPLIIEGA
                     GGALVPLTRTLLYADLFVLWSAPVVIVARTALGTINHSLLTVEALRARNIPVLGIAFV
                     GEANEDSEATIAAIGNVHRLGRLPHVDPLTPERLSAAFAANFRVEDFGL"
     gene            1515..2825
                     /locus_tag="VE567_00710"
     CDS             1515..2825
                     /locus_tag="VE567_00710"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010215531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004015 -
                     adenosylmethionine-8-amino-7-oxononanoate transaminase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HYZ47395.1"
                     /translation="MTSPVWRPFTQHGLGEPVPKIVRAEGAVLWTDGGRRIIDAISSW
                     WVTTHGHRHPRIMAAIAEQTERLDQIIFAGWTHEPAEQLAEELIDLLPDPLAYVFYSD
                     SGSTSVEVALKMALGYWRNIGAPRHRIAVMESSYHGDTVGGMSVGARGPFSRSYASLL
                     FDVDTLPFPEEGAEQATLDALETLCRGGDLAALIVEPLVLGAGGMRIYTPQVLAGMRS
                     ICARHGVLFIADEVMTGWGRTGSLLACEQAGVVPDILCLSKGLTGGAVPLAVTVATAP
                     IFEAHRSSDRAKMLFHSSSYTANPIACAAALANLAVWREEPVAERIATLAARQAERLA
                     ALPGVLNRRQIGTITAMEVGTAESTYMSNLAPRLLAFFRDQGLLLRPLGNTLYVMPPY
                     CIDEDDLDRIYAAIAEAVAMGPAQPPENPPFVAQKTSTARPIAD"
     gene            complement(2838..2913)
                     /locus_tag="VE567_00715"
     tRNA            complement(2838..2913)
                     /locus_tag="VE567_00715"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2878..2880),aa:Val,seq:tac)
     gene            complement(2980..3375)
                     /locus_tag="VE567_00720"
     CDS             complement(2980..3375)
                     /locus_tag="VE567_00720"
                     /inference="COORDINATES: protein motif:HMM:NF019428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE/TadG family type IV pilus assembly protein"
                     /protein_id="HYZ47396.1"
                     /translation="MNLLKRLRRDQAGSPAVQFALAAPTLLLLVIGIIQLGLLFSAYA
                     GMASAVNEGARFATIYPTPTDDQIIAKMNQKKFLVQDARMTVAAPVHATANGVQYVEL
                     TMTYSAPLNFVFFSTPAVTLRQTRRAYLS"
     gene            complement(3372..3842)
                     /locus_tag="VE567_00725"
     CDS             complement(3372..3842)
                     /locus_tag="VE567_00725"
                     /inference="COORDINATES: protein motif:HMM:NF019428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE/TadG family type IV pilus assembly protein"
                     /protein_id="HYZ47397.1"
                     /translation="MTMRLLLAQIRADCQGASFVELGIIAPFFALLALGTVDASRAVI
                     EKITVQQAASRTIEMAAAGGLNSDAFGNLQSEAATAAGVSTSNVTVDAWLECDRVRQS
                     DFNGDCPSNQEIGRYVSVLINKNYSPWFASSLAGLGYNVSRAITVKGKASVRMQ"
     gene            complement(3839..5107)
                     /locus_tag="VE567_00730"
     CDS             complement(3839..5107)
                     /locus_tag="VE567_00730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020818425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein TadG-related protein"
                     /protein_id="HYZ47398.1"
                     /translation="MRAFRLLLRLARAKRGNVIVAAAASLPVVIGGAGLATDTLQWTL
                     WKRQLQRAADSAALSGAYALAQSKSASTSATADLARTAELSYSSAPTIQSPPTSGPGL
                     GNNSAVRIVVQTARNLPFSSLFLSAGPTVTAEATAAVVSNGNYCVISLEPTTAVGITM
                     SGNSTVNMGCGMATNSRATNAVNAGGSSQITATPIAAVGGLAWSNNYLGETQLKPRQI
                     PQADPYASLPDPDISSTQCNGQMAVPPHDDQSFTPGCYKKVDIKGTARLAAGVYFIDG
                     GSFSVGAQGVVVGTGVTIILTSKTASSNPSSIATVDMNGGATIQLTAPTTSSPSPANT
                     YAGVIFYQDRRAVDSGSNKINGNSSAFYQGSFYFPRQEVEFTGTSGMTTDCLQIVGRR
                     VKFSGNSSISNHCPSGGPRSFTGTAVRLIG"
     gene            complement(5314..5390)
                     /locus_tag="VE567_00735"
     tRNA            complement(5314..5390)
                     /locus_tag="VE567_00735"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5354..5356),aa:Arg,seq:cct)
     gene            complement(5425..>5764)
                     /locus_tag="VE567_00740"
     CDS             complement(5425..>5764)
                     /locus_tag="VE567_00740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007711327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47399.1"
                     /translation="DWQSGTTVRGNTGSSSDDLRFGDLATVNFRLFANLGGMPKVLAD
                     HPWLRGSRLTVSVDNLFNARQRVRDATGATPPNYQPDLLDPLGRTVRVTFRKLFFSLP
                     QRPAARPGSD"
BASE COUNT          995 a         1799 c         1915 g         1055 t
ORIGIN      
        1 ggccgaagcc gctgctttct tcggaagcga ggcggcgttg ttcctgtcca gcggctatgt
       61 cgccaactcg gccttgctgt cgacgctgcc tcaaagcggc gatcatatct tctatgacgc
      121 cttgattcat gccagcgcgc atgaaggaat gcggctggcg cgctgcggcg gaaccgaagt
      181 gccgcacaac gatgccgaag gcttcgaacg cgccatcgcc cggtggcgcg cggcgggcgg
      241 tgatggacgg ccgtggattg ccgtcgaaag cctttacagc atggacggtg acagggcgcc
      301 gctcgaggcg ctcgccgcca tcgccgaccg gcacgaggcg ttcctgctga tcgacgaggc
      361 gcacgcgacg ggcgtgttcg gcgaaggcgg ccgcgggctc gccgccggct tggagggacg
      421 cgagaacgtg atcgtgctgc gcacgctggg caaggcgctc ggctgcgaag gcgcgctcat
      481 ctgttgcgca ggggtcctgc gggatttcct ggtcaaccgg gcgcgggggt tcatcttttc
      541 gaccgccccg tcgccattga tggccgccgt cgcgcgcgca gcgatcgcga tcgctgccga
      601 tgcagacgac cgccgcgccg ccctgcgcgc gctctggacc tatgccgcag agcggctcgt
      661 cgatcatggc gcccaggcaa caggtaccca gatcatgccg ctgatcctgg ccgatgacgg
      721 cctgacgatg gccgtggcag gcaagctcca ggccgccggg cttgacgtgc gcggtatccg
      781 gccaccgacc gtggcgcccg gcaccgcgcg gctgcgcatc tcgctgaccc tgaatgttgg
      841 ccaggccgat atcgacgcgc tcgatgcggc attggcgcag gcgctcgcat gacccggcgg
      901 atcatcgtca ccggcaccga cacggacgtc ggcaaaaccg ttttcgccgc tgcactgacc
      961 gccgcgatcg atggctgcta ctggaaaccc gtgcaggccg ggctcgacca gggcggcgac
     1021 agcgacgtcg tcgcagctct cgccggcctg gaccgagcgc gggtctttcc agaggcgtat
     1081 cgccttccca cgccgtgttc gccgcatcgc gcagcggaga tcggcggcgt gaccatcgat
     1141 ccggccagat tgactccgcc caaaagcgac catccgttga tcatcgaagg cgcaggcggc
     1201 gcgctggtgc cactcacccg cactttgctt tacgcggacc tgttcgtact ctggagcgcg
     1261 cctgtggtca tcgtggcgcg gactgcgctg gggacgatca accacagctt gcttaccgtg
     1321 gaagcgctcc gcgcgcgcaa cattcccgtg ctcggcatcg cattcgtcgg cgaagccaat
     1381 gaagacagcg aggcgacgat cgccgcgatc ggcaatgttc atcggctcgg ccggcttccc
     1441 cacgtcgacc cgctgacgcc ggagaggctc agcgccgcct tcgccgccaa tttccgcgtc
     1501 gaggatttcg gcctatgacc tcgccggtct ggcggccctt cacgcagcac gggctgggcg
     1561 agccagtgcc gaaaattgtg cgtgccgaag gcgctgtgct gtggacggat ggcggtcggc
     1621 ggatcatcga tgcgatttcg tcctggtggg tgacgacgca cgggcaccgt cacccgcgga
     1681 tcatggcggc gattgccgag cagacggagc ggctcgacca gatcatcttt gcgggctgga
     1741 ctcacgaacc ggccgaacaa ctggcggagg agctgatcga tctgctgccc gaccccctcg
     1801 cctatgtctt ctattccgac agcggctcca ccagcgtcga agtcgcgctg aaaatggcgc
     1861 tcggctattg gcgcaatatc ggtgcgccgc gacatcgtat cgccgtgatg gagtcgagct
     1921 atcatggcga caccgtcggg ggcatgtccg tcggcgcgcg cggaccgttc agccgcagct
     1981 acgcatcgtt gctgttcgat gtcgatactt tgccgtttcc ggaggagggg gccgagcaag
     2041 cgacgctcga cgctctcgaa acgctgtgcc gcggcggtga tctggcggct ctgatcgtcg
     2101 agcctttggt gttgggcgcc ggcgggatgc gcatctacac gccgcaggtg ctggcgggca
     2161 tgcggtcgat ctgcgcccgg catggcgtat tgttcatcgc cgatgaagtg atgaccggct
     2221 ggggccggac cggttcgctg ctcgcctgcg agcaagcagg cgtggtgcca gacattctct
     2281 gtctgtccaa agggttgacg ggaggcgcgg tgccgctggc cgtcaccgtc gccaccgcac
     2341 cgatcttcga ggcgcatcga tcgagcgacc gcgcgaagat gctgttccac tcgtcaagtt
     2401 acaccgccaa tccgatcgcc tgcgcagccg cgctcgccaa cctggccgtg tggcgggagg
     2461 agccggtcgc cgagagaata gcgacgctcg ctgcacgaca agccgagcgt ctggcggcgc
     2521 tgcccggcgt gctgaaccgc cgccagatcg gcacgatcac ggcgatggaa gtcggcacag
     2581 ccgaaagcac atacatgtcg aatctggcgc cgcgcctgct cgccttcttt cgcgatcagg
     2641 gcctgctgct gcgcccgctg ggcaataccc tctatgtgat gccgccatat tgtatcgacg
     2701 aggacgatct cgaccgcatt tatgcggcaa ttgccgaagc ggtcgcgatg gggcccgcgc
     2761 aacctcccga aaatccgccc ttcgtcgccc agaaaacgag cactgctcgt cccatagcag
     2821 attagaaata tgggaaatgg tgggcggtga cgggctcgaa ccgccgaccc tctcggtgta
     2881 aacgagatgc tctaccaact gagctaaccg cccggggcac cttcgcctgt gcctcaagct
     2941 tgccctggcc gcaagccgcc gttcctggcc ggagccggat tacgacagat aagcgcggcg
     3001 ggtctgcctc agtgtcaccg cgggagtcga gaagaagacg aagttgagcg gcgccgaata
     3061 ggtcatcgtc agctcgacat attgtacgcc gttcgcggtc gcgtgcaccg gggccgcgac
     3121 cgtcatacgg gcgtcctgaa ccagaaactt cttctgattc attttcgcaa tgatctggtc
     3181 gtcggtcggt gtcggataga tggtcgcaaa gcgcgcaccc tcgttcacgg cgcttgccat
     3241 gcctgcatat gcggagaaga gcagtcccaa ctggatgatg ccgatcacga gcagtaacaa
     3301 ggtcggcgcg gcgagcgcga attggacggc cggtgagccg gcctggtcgc ggcgcaggcg
     3361 cttcagcagg ttcattgcat cctcaccgaa gctttgccct tcaccgtgat ggcgcggctg
     3421 acattatagc cgagcccagc gagcgacgag gcgaaccacg gcgagtagtt cttgttgatc
     3481 agcaccgaga catagcggcc gatttcctga ttgctgggac aatccccgtt gaagtcactt
     3541 tggcgaacac gatcgcattc gagccaagcg tccactgtca cgttgctggt gctgacgccc
     3601 gccgcggtcg cggcctcgga ttggagattg ccgaatgcat cgctgttcaa gcctccggct
     3661 gcggccatct cgatcgtgcg cgaggccgcc tgctgcaccg ttattttttc gatgaccgcg
     3721 cgcgaggcgt cgaccgtccc cagcgccagc agcgcaaaaa aaggcgcgat tatgcccaat
     3781 tcgacaaagc tggcgccctg gcaatcagca cgaatttggg caaggaggag gcgcatggtc
     3841 atccgatcag ccttaccgcc gtaccggtga atgatctcgg cccgcccgag gggcagtggt
     3901 tagagattga gctattgccg ctgaacttca cgcggcgccc gacgatctgc aggcagtcgg
     3961 tcgtcatgcc ggatgtgcca gtgaattcga cttcctgtct cgggaaatag aagctgccct
     4021 gatagaaggc gctggagttg ccgttgatct tattggagcc gctgtcgacc gcccgacgat
     4081 cctggtagaa gattacgccg gcgtaggtgt tggcgggcga agggctgctg gtcgtcggag
     4141 cggtcagctg gatggtcgcg ccaccattca tatccactgt cgcgatgctc gatgggttag
     4201 agcttgccgt cttgctggtc aggatgatcg tgacgccggt cccgacaacg acgccctgtg
     4261 caccgacgct gaagctgccc ccgtctataa aatagacgcc cgcagccagc ctggccgtcc
     4321 ccttgatgtc gacctttttg tagcatcccg gagtgaagga ttggtcgtcg tggggaggga
     4381 cggccatctg cccgttgcac tgcgtcgagc ttatgtccgg gtccggcagc gacgcgtatg
     4441 gatcggcttg cgggatctgc cgcggcttga gctgcgtctc ccccagataa ttgttgctcc
     4501 aggccagccc gcccaccgcg gcgatcggcg tggcggtaat ctggctgctg ccgccggcat
     4561 tgaccgcatt ggtggccctg gagttcgtcg ccatgccgca gcccatgttc acggtcgaat
     4621 tgccggacat tgtgatcccg accgccgtgg tcggctccag cgagatcacg caataattgc
     4681 cgttgctcac gaccgccgca gttgcctccg ccgtgacggt cggcccggcg gagaggaaca
     4741 ggctggagaa aggcaggttg cgcgcggtct gcacgacgat gcgcaccgcg ctgttgttgc
     4801 cgaggcccgg tcccgaagtc ggcggcgatt gaatggtcgg cgccgaagag taggacaatt
     4861 cggcagtacg agccagatcg gcggtggcgc tggtcgaggc gcttttgctt tgcgccaacg
     4921 cgtatgcccc ggatagcgcg gccgaatcgg cggcgcgctg caattggcgc ttccagagcg
     4981 tccattgtag cgtatcggtg gcaagaccag ccccgccgat cactacgggc agcgaggcag
     5041 cggccgcgac gatgacattt ccgcgtttgg ctcgtgcaag ccgcagcagc agtcgaaaag
     5101 cgcgcatggc aaactctcct cggggccgtc gcattggccg aagctcggtt agtacgggtt
     5161 caagagagaa ggttaatgcc gctccacccc acgatccatg ctcgcacgaa acatgagcac
     5221 ccgctgtgga agcgccattt aagagaggag gtctgtgcga ctgaaagaat cggaacgaag
     5281 cgatccgatt cgagggaaag gagagagcag gattggtgcg cccgactgga ttcgaaccag
     5341 tggcccccag attaggaatc tggtgctcta tcctgctgag ctacgggcgc atcgtgcttc
     5401 tcctgccttt gtggggcgtt tcggtcaatc gcttcccggg cgggcggcgg ggcgctgtgg
     5461 tagcgagaag aagagcttgc gaaaggtgac gcgcacggtg cgtccgagcg gatcgagcag
     5521 gtcgggctga taattgggcg gcgtcgcgcc ggtcgcgtcg cggacgcgtt ggcgagcgtt
     5581 gaacagattg tcgaccgaga cggtgagccg gcttccgcgc aaccagggat gatccgccag
     5641 cactttaggc atgccgccga ggtttgcgaa gaggcggaaa ttcacggtcg cgaggtcgcc
     5701 gaagcgaaga tcgtcgctcg acgatccggt gttaccgcgc acggtggtgc cgctttgcca
     5761 gtcg
//
LOCUS       DASQVK010000032         3305 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_349855,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000032 DASQVK010000000
VERSION     DASQVK010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3305
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349855"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..965
                     /gene="tyrS"
                     /locus_tag="VE567_00745"
     CDS             <1..965
                     /gene="tyrS"
                     /locus_tag="VE567_00745"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HYZ47400.1"
                     /translation="SRKLLDEDGIYANIASIRRVFERFLTFGEGPTDAIIVNNADWLD
                     ALEYIPFLRDVGRHFTINRMLTFDSVRLRLEREQPLTFLEFNYMILQAYDFLELSRRF
                     GCRLQMGGSDQWGNIVNGIELGRRIDGAELYGVTTPLITTADGAKMGKTAAGAVWLNE
                     DQLSSYEYWQFWRNTDDRDVGRFLRLFTDLPLDEIARLESLQGAEINEAKKILANEAT
                     GLCRGRVAAAEAAETARKTFEEGAAGEALPTVSVPEGQIGIVDALVALGLAASKNEAR
                     RLIKQGGARVDGEKIDDEAADVVLGDAPVRISAGKKNHGLLTRA"
     gene            1011..2003
                     /locus_tag="VE567_00750"
     CDS             1011..2003
                     /locus_tag="VE567_00750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYZ47401.1"
                     /translation="MSQPYVRPDVHAFLGFLNNLPGPKTHELSPAEARAAFVMLRDVG
                     DLPVGDLAVKRDLKCGEIPVRLYSARERREPGPALVFFHGGGFVIGDLESHDNFCAEA
                     ARSLDLPVIAVDYRLAPEHPFPAAPDDCETAARWVAESPAELGLHVTSLVLAGDSAGG
                     NLTIVTAQQLRDRPAKVPVIAQWPIYPVVDDVDKYQSFRDFAEGYFLTRDSMRWFSEA
                     YRAAEGDVRNTPILHRQEGLPPTLLITAGLDPLRDQGRAFAGELIRAGVPTVYREARG
                     NIHGFITLRKAIPSSAGDVAACFRILKDMINEAEAERAMAIAAQGADRVAAAAE"
     gene            2000..2482
                     /locus_tag="VE567_00755"
     CDS             2000..2482
                     /locus_tag="VE567_00755"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HYZ47402.1"
                     /translation="MSDLPYRPAVGVMLLNAENKVLVGQRLDNALDAWQMPQGGLDPG
                     EEPVDGALRELEEETGIRRDLVEIIACASRQLDYDLPPDLMGQVWGGKYRGQRQTWFI
                     ARFLGSDDDVHIDTAEPEFRAWKWADPSELPAMIVPFKRELYRAVLEEFAEHLGQGAR
                     "
     gene            complement(2467..>3305)
                     /locus_tag="VE567_00760"
     CDS             complement(2467..>3305)
                     /locus_tag="VE567_00760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007710587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYZ47403.1"
                     /translation="LKQAIEQGIVPGPRMLVATRALVATGSYGPKGFEPGVAVPQGAE
                     EADGSNLVQAVRRQIGGGADIVKLYADYRWGPGEPSRPTFSLDEIKAAAEAAHSAGRI
                     VAVHATTAEGMRRAALAGVDTIEHGDQGTPEVFRLMKERGIALCPTLAARDAIARYRG
                     WNGKEPAPPGVVESRKSFAAARAAGVAICMGGDVGVFAHGENAREMDLMAGAGMPAPD
                     VLISATSGNARIFRIADRLGAVKPGLLADLVAVEGDPTRDIGAVRQVRFVMKGGVVYR
                     AP"
BASE COUNT          541 a         1117 c         1110 g          537 t
ORIGIN      
        1 aatcgcgcaa gctgctcgac gaggacggga tctacgccaa tatcgcctcg atccgccgcg
       61 tgttcgaacg gttcctgacg ttcggcgagg gcccgaccga tgcgatcatc gtcaacaatg
      121 ccgattggct cgacgcgctc gaatatatcc cgttcctgcg cgatgtcggg cggcatttca
      181 cgatcaaccg gatgctgacg ttcgattcgg tccggttgcg gctggagcgc gagcagccgc
      241 tcactttcct cgagttcaac tatatgatcc tccaggccta tgactttctg gagctgtcgc
      301 gccgcttcgg ctgccggctg cagatgggcg gatccgacca gtgggggaac atcgtcaacg
      361 gcatcgagct ggggcgccgg atcgacggcg ccgagcttta cggcgtcacc acgccgctga
      421 tcaccaccgc cgacggggcc aagatgggca agaccgccgc cggcgcggtc tggctgaacg
      481 aggatcagct ttcgagctac gaatactggc aattctggcg gaacaccgac gatcgcgacg
      541 tcgggcgttt cctgcgtctc ttcacggatc tgcccctgga cgaaatcgcg cggctggaat
      601 cgcttcaggg cgcggagatc aacgaggcga agaagatcct cgccaacgag gcgactggct
      661 tgtgccgggg ccgcgtcgcc gccgcggagg ccgccgaaac cgcgcgcaaa acattcgagg
      721 aaggggccgc cggcgaggcg ctgccgaccg tgtcggtgcc agaagggcag atcggcatcg
      781 tggatgcgct ggtcgcgctc ggcctcgccg cctccaagaa cgaagcgcgg cggctgatca
      841 agcagggcgg cgcacgcgtg gacggcgaga agatcgacga cgaagcggcc gatgtggtcc
      901 tcggcgatgc gccggtccgc atttcggcgg gcaagaagaa tcatggcctt ctcacacgcg
      961 cgtgaggagg tttagacaga gcggcaatcg caaccgttag gaggcctgcc ttgtcccagc
     1021 cctatgttcg ccccgacgtc cacgcgttcc ttggctttct caataacctg ccggggccga
     1081 agacgcacga gctgagcccg gccgaagcgc gtgccgcatt cgtgatgctg agagacgtgg
     1141 gcgacctccc ggtcggggac cttgccgtca agcgcgacct caaatgcggc gagattccgg
     1201 tccggctcta cagcgcgcgc gagcggcgcg agcctggccc ggcgctggtc tttttccacg
     1261 gcggcgggtt cgtgatcggc gatctggagt cccacgacaa cttctgcgcc gaagcggcgc
     1321 ggtcgctgga cctgccggtg atcgccgtcg attatcgcct cgcgccggag catcccttcc
     1381 cggccgctcc ggacgattgc gaaacggcgg cgcgctgggt ggcagagagc ccggccgagc
     1441 ttggcctgca cgtgacgagc ctggtgctgg ccggcgacag cgcgggcggc aacctcacca
     1501 tcgtcaccgc gcaacagctc cgcgaccggc cggccaaagt gccggtcatc gcacagtggc
     1561 cgatctaccc ggtggtcgac gatgtggaca aatatcagtc gttccgggat ttcgccgaag
     1621 gctatttcct gacgcgggac tcgatgcgct ggttctccga agcctatcgc gcggcggaag
     1681 gagacgttcg caacacgccg atcctccaca ggcaggaggg gctgccgccg accttgctga
     1741 tcaccgccgg cctcgacccg ctgcgcgacc agggccgcgc cttcgccggc gagctgatcc
     1801 gcgcgggcgt gccgaccgtc tatcgcgagg cccggggcaa tatccacggc ttcatcacct
     1861 tgaggaaagc gattccgtcg agcgcgggcg atgtggcggc gtgcttccgt attctgaaag
     1921 acatgatcaa cgaggccgag gccgagcgcg cgatggcgat cgcggcacag ggggccgacc
     1981 gcgtcgcggc ggcggccgag tgagcgatct tccctatcgc cccgccgtgg gcgtgatgct
     2041 gctgaacgcc gagaacaagg tattggtcgg ccaacggctc gataatgcgc tcgacgcctg
     2101 gcagatgccg caaggcggtc tcgaccccgg cgaggagccg gtcgacggcg cgctgcgcga
     2161 gctggaggaa gaaaccggca tccgccgcga tctggtcgag atcatcgcct gtgcctcgcg
     2221 ccagctcgat tacgacctgc cgcccgacct gatggggcag gtgtggggcg gcaaatatcg
     2281 cggccagcgc cagacctggt tcatagcgcg cttccttggg tccgacgacg acgtgcatat
     2341 cgatacggcc gaacccgaat tccgggcgtg gaaatgggcc gatccgtcag agctgccggc
     2401 gatgatcgtg ccgttcaagc gggaactgta tcgcgccgtg ctcgaggaat tcgcggagca
     2461 tctgggtcag ggcgcgcggt aaacgacccc gcccttcatc acgaaccgca cctgtcggac
     2521 cgcgccgatg tcgcgcgtcg gatcgccctc gaccgcaacc agatcggcca gcaatcccgg
     2581 cttcacggca ccgagcctgt cggcgatccg gaagatccgc gcattgcctg aggtggcgga
     2641 gatcagcacg tcgggggccg gcatgcctgc gcctgccatc aggtccatct cgcgcgcatt
     2701 ctcgccatgt gcgaacacgc cgacatcgcc gcccatgcag atggcgacgc ccgccgcgcg
     2761 tgccgccgcg aagctcttgc ggctctcgac cacgcccggc ggtgcaggtt cctttccgtt
     2821 ccagccgcga tagcgcgcga tggcgtcgcg ggccgctagt gtcgggcaaa gcgcgatgcc
     2881 gcgctccttc atcaggcgga agacctcggg cgtgccctgg tcgccatgct cgatcgtgtc
     2941 gacgccggcc agcgcggcgc ggcgcatgcc ttccgccgtg gtggcatgca cagcgacgat
     3001 gcgcccggcc gagtgcgccg cttcggccgc cgctttgatc tcgtccaggc tgaaggtcgg
     3061 ccggctgggc tcgcccgggc cccagcgata atcggcatag agcttcacga tatcggcgcc
     3121 gccgccgatc tgccgccgca ctgcctggac caggttcgat ccatccgctt cttccgcgcc
     3181 ttgcggcacc gcgacgcccg gctcgaagcc cttcggccca tagctgccgg tcgcgaccaa
     3241 cgcgcgggtg gcaaccagca tccgtgggcc cggcacgatg ccctgctcga tcgcctgctt
     3301 gagcc
//
LOCUS       DASQVK010000033         2564 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_444632,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000033 DASQVK010000000
VERSION     DASQVK010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2564
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_444632"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(87..2009)
                     /gene="dxs"
                     /locus_tag="VE567_00765"
     CDS             complement(87..2009)
                     /gene="dxs"
                     /locus_tag="VE567_00765"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HYZ47404.1"
                     /translation="MNRPSTPLLDRVSYPADLRGLPPGELRQLADELRAEMVSAVSVT
                     GGHLGAGLGVVELTVALHYVFDTPSDRLIWDVGHQAYPHKILTGRRDRIRTLRQGGGL
                     SGFTKRGESEYDPFGAAHSSTSISAALGFAIANQLADAPGKAIAVIGDGAMSAGMAYE
                     AMNNARAAGNRLVVILNDNDMSIAPPVGGLSAYLSRIVSSREFLGLRDLAKRFARRLP
                     RPLHDAARKTDEFARGLAMGGTLFEELGFYYVGPIDGHNLDHLIPVLENVRDAEEGPI
                     LVHVVTKKGKGYAPAEAAADKYHGVQKFDVITGAQAKAPAGPPSYTGVFANALLAEAA
                     RDPRICAITAAMPSGTGLDKFADKFPERCFDVGIAEQHAVTFAAGLAAQGMRPFAAIY
                     STFLQRAYDQVVHDVAIQNLPVRFAIDRAGLVGADGATHAGSFDVTYLATLPNMVVMA
                     AADEAELVHMVHTAALHDTGPIALRYPRGNGTGAALPATPERLEIGKGRIVRQGKTVA
                     ILSLGTRLAEALKAADRLEAQGLSTSVADLRFAKPLDEALIRKLLTSHEVAVTIEEGA
                     IGGLGAHVLTLASDLGLIDAGLKLRTLRLPDTFQDQDKPELQYKEAGLDADAIVETVL
                     KALRKNSVSIIKDARA"
BASE COUNT          431 a          827 c          864 g          442 t
ORIGIN      
        1 tcctggccgt gaacgggacc gaagcggctt cggccagctt tctcgggcac tggaccgggc
       61 ggtctggatg aagccgacct ggccggtcag gcccgcgcgt ccttgatgat gctgacgctg
      121 ttcttgcgga gcgccttgag caccgtctcc acgatggcgt cggcgtcgag tccggcctct
      181 ttgtattgga gttcgggctt gtcctggtcc tggaaggtgt cggggaggcg cagggtgcgc
      241 agtttgaggc cggcgtcgat gaggcccaga tcgctggcga gggtgaggac gtgggcgccc
      301 aggccgccga tcgcgccttc ctcgatggtg accgcgacct cgtgggaggt gagcagcttg
      361 cggatcagcg cttcgtccag gggcttggcg aagcggaggt cggcgacgct ggtcgagagg
      421 ccctgcgctt cgagccggtc ggcggccttc agcgcttccg caagccttgt gccgagcgac
      481 aggatcgcga ccgtcttgcc ctggcggacg atccggccct tgccgatctc gagccgctcc
      541 ggggtcgcgg gcagcgccgc gccggtgcca ttgcctctgg ggtagcgcag cgcgatcggg
      601 ccggtatcgt ggagggctgc ggtgtggacc atatggacca gctcggcctc gtcggcggcg
      661 gccatcacca ccatgttggg cagggtcgcg agatacgtca cgtcgaagct gccggcatgg
      721 gtcgcgccgt cggcgccgac cagcccggcg cggtcgatcg cgaacctgac cggcaggttc
      781 tggatcgcga cgtcgtgcac cacctggtca taggcgcgct gcaggaaggt cgagtagatc
      841 gccgcgaacg gccgcatgcc ctgcgccgcc agcccggccg cgaacgtcac cgcatgctgc
      901 tcggcaatgc cgacatcgaa gcagcgctcg gggaatttgt ccgcgaattt gtcgaggccg
      961 gtgcccgacg gcatcgccgc ggtgatcgcg cagatcctcg ggtcgcgggc ggcttcggcg
     1021 agcagggcgt ttgcgaacac gcccgtgtag ctgggcggcc ccgccggcgc cttggcctgg
     1081 gcgccggtga tcacgtcgaa cttctgcacg ccatgatatt tgtcggccgc cgcttcggcc
     1141 ggggcatagc ccttgccttt cttggtgacg acatggacca ggatcggccc ttcctcggcg
     1201 tcgcggacat tttccagaac cgggatcaga tggtcgagat tatggccgtc gatcgggccg
     1261 acatagtaaa agccgagctc ctcgaagagg gtgccgccca tcgccagccc gcgcgcgaac
     1321 tcgtcggtct tgcgcgccgc atcgtgcaac gggcgcggca gccgccgcgc gaagcgcttg
     1381 gcgaggtcgc gcaggcccag aaactcgcgg ctcgacacga tccgcgacag ataggccgac
     1441 aagccgccca ccggcggcgc gatcgacatg tcgttgtcgt tgaggatcac gaccagccgg
     1501 ttgccggcgg cccgcgcatt gttcatcgcc tcataggcca tgcccgccga catcgcgccg
     1561 tcgccgatca ccgcgatcgc cttgccgggc gcgtcggcga gctggttggc aatggcaaag
     1621 ccgagcgccg ccgagatcga ggtcgaggaa tgcgccgcgc cgaacgggtc gtactcgctc
     1681 tcgccgcgct tggtgaagcc cgacagcccg ccgccctggc gcaaggtgcg gatgcggtcg
     1741 cggcggccgg tcaggatctt gtgcggatag gcctggtggc cgacgtccca gatcagccgg
     1801 tccgaaggcg tgtcgaacac ataatgaagc gccacggtca gctcgacgac gcccagcccc
     1861 gcccccaaat gcccgccggt caccgacacc gccgacacca tctccgcccg caactcgtcc
     1921 gccagctgac gcaactcccc cggcggcaac ccccgcagat cggcgggata agacacgcgg
     1981 tccaaaaggg gtgtcgacgg tctgttcatg gcgattctcc cccgacggct tcggccggcc
     2041 aaaaatccta tgtcgatcca gtcgcttccg atagcaagac tggcggggga aaacgacgcc
     2101 ccttcgggag ccgcgacaaa ttttcggcgc gagtgtggct tccaggcccg cccaatccgg
     2161 cgctcaggcc ccttagattc acaaacgtct tagggtgagc cgcccttttc gcgaattcaa
     2221 gcggggttca cgagcaggat caacggctta cgccaaattg cgcgaacgct acagccaaaa
     2281 tggcgtcgat tctgctggta agggtccagt gcgcgtgaac cgccgagaga acgacacctc
     2341 cggatcggag ctaacttatc gtcggccgga cgctcgggtg gatagagtgg cgtttgatgt
     2401 cactctgtca cccaagacag agaagacgcc gcaagtgatt gggttcttta gagcagattt
     2461 tagaccgatc cagatcgtca ttattcgttc gagccaaatt ggtcagagtc atacatatgc
     2521 aattcaagca ttggaggtcg atcagtgagc gagaattatg ccag
//
LOCUS       DASQVK010000034         3095 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_65447, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000034 DASQVK010000000
VERSION     DASQVK010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3095
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65447"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2191
                     /locus_tag="VE567_00770"
     CDS             <1..2191
                     /locus_tag="VE567_00770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYZ47405.1"
                     /translation="DAIDTGSAVPGLPFINFCGAGSNCTTLQDGLYFQNESRDFDHRE
                     GTKDLSANIQWDVSDRFRTSFDVQHIRASTYNNDILVATGSAANYQYSLNGDGTPQIA
                     LLPGSNVNYAAGGLANPHNYWIPFIQGHVENNNATETALRGDAEYDLDKGGWLDSLKV
                     GVRYADRRQTVRYSTFNWTPIAAEWNCNGPGFNVDNTSPAPYPACSASRGTFQGYGAG
                     IFGPYNIGGLYDGRVFPNGQLVFVNRSVLTNYSKLMQGLSGATTNSPLGTGYTPICDR
                     MEATVDDCFTPSEVMRLRERTEAAYAMLRFGGEATYISGINVRGNVGVRVIRTTENSV
                     GSVGFPTQTALTQLPACNAPLGANSVVNPSCYLTPSVLAFAVGGGTPNTYRSSFTNWL
                     PSFNVRLGLDSKDFIRFAYSRALSRPDIGLLRNYVQINPPLIDTSPDSPYVIYNSPTA
                     AHTAANVVGYKFVFQANAGNAGLRPLMADQFDLSFERYMGRSSSFTFDVFYKKLTNSI
                     AYGLSNRSFTNNGSTQLVQINGPQNVRHGGSLTGFEAAYQTFFTFLPDPLDGLGVQLN
                     YTYVHQSGINNSNLINATSGGDVGAIGVGIPANGGAGPVIDSHQLAGISKHTFNVVGL
                     FEKGPVGVRLAYNWRSRYLTQNLDCCIGLPVFQKAAGFLDASVRLSVASFLELSIDAS
                     NLLNTRTVYQQQIFGDSPLTPGVKPVYFDSGWSRVDRRFQFGARAKF"
     gene            2279..>3095
                     /locus_tag="VE567_00775"
     CDS             2279..>3095
                     /locus_tag="VE567_00775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan halogenase family protein"
                     /protein_id="HYZ47406.1"
                     /translation="MEHGAYRILIVGGGTAGWMAAAALRRRLDPADYSISLVESDEIG
                     TVGVGEATLPHIKIFNDMLGLSEPEFMRATHATFKLGIEFCGWDRPGDRYIHPFGAFG
                     EPWGGVEFQHHWLRAQAHGRSVAPLEAYSFAVMAAKANAFDLPDEDPDSIRSTYSYAY
                     HFDAGRFADYLRAHATERGVARIEGQVCAVERESESGALAAVTLKSGQRLEADLFIDC
                     TGFRSLLLGGQFGVEWEDWSRWLPCDRALAVPCDHGEGGFTPYTRATARTAGWQ"
BASE COUNT          566 a         1014 c          917 g          598 t
ORIGIN      
        1 ggacgcgatc gacaccggtt cggcagtgcc cgggttgccg ttcatcaatt tctgcggcgc
       61 cggctcaaat tgcacgacgc tccaggacgg cctttatttc cagaacgaat cccgcgattt
      121 cgatcatcgc gaaggcacca aggacctttc ggccaatatc caatgggacg tgtccgatcg
      181 gttccgcacc agtttcgacg ttcagcatat ccgcgcgtcg acctacaaca acgatatcct
      241 ggtcgcgacc ggatcggccg cgaattacca gtatagcctc aatggcgacg gcacgccgca
      301 gatcgcgctg ctgcctggct cgaatgtcaa ttatgcggcc ggcggcctcg ccaacccgca
      361 caattactgg attccgttca tccagggcca tgtcgagaat aacaacgcga ccgagaccgc
      421 gctgcgcggc gatgccgaat atgatctcga caaaggcggc tggctcgact cgctgaaggt
      481 cggcgttcgc tacgccgatc gccgccagac ggttcgctac tcgacgttca actggacgcc
      541 gatcgcagcg gaatggaact gcaatggccc cggcttcaat gtcgacaaca cctcgccggc
      601 cccctatccg gcctgcagcg ccagtcgcgg cactttccag ggctatggcg cgggcatttt
      661 cgggccttac aacatcgggg gtctttacga cggtcgggtc tttcccaatg gccagctcgt
      721 cttcgtcaac cggtcggtgc tcaccaatta ttccaaactg atgcaggggt tgtccggcgc
      781 gaccaccaac tccccgcttg gcaccggcta cacgccaatc tgtgatcgca tggaagcgac
      841 cgtcgacgat tgtttcacgc cgtccgaggt tatgcgactg cgcgagcgga cggaggcggc
      901 ctatgcaatg ctgcggttcg gcggggaggc aacctatatc tccggcatca acgtccgggg
      961 caatgtgggt gtacgcgtca tacgcacgac cgagaacagc gtcggcagcg tcggctttcc
     1021 gacccagacg gccttgaccc agctgccggc ctgcaacgcg cctcttggcg cgaacagcgt
     1081 ggtcaatccg agctgctatc tgacgccgtc ggttcttgcc tttgccgttg gcggaggcac
     1141 acccaacacc taccgaagca gcttcacaaa ctggctgccg agcttcaacg tccgcttggg
     1201 cctcgacagc aaagacttca tccgatttgc ctattcgcgg gcgctgtcgc ggccggacat
     1261 cggcctgctg cgcaactatg ttcagatcaa tccgccgctc atcgacacct cgccggattc
     1321 gccttacgtc atctataatt cgccgaccgc agcgcacacc gcggcgaatg tcgtcggtta
     1381 taagttcgtg ttccaggcca atgccggcaa tgcggggctg cggccgctca tggcagatca
     1441 gttcgacctc tcgttcgaac gctatatggg ccgaagctca tccttcacgt tcgatgtctt
     1501 ctacaagaag ctgaccaaca gcatcgccta tgggctgagc aatcgcagct tcaccaacaa
     1561 cggctcgacg cagctcgtcc agatcaacgg tccgcagaac gtgcgtcatg gcgggtcgct
     1621 gaccggcttc gaggccgcct accagacctt cttcaccttc ctgcccgatc cgttggacgg
     1681 cctcggagtg cagctcaatt acacctatgt gcatcaatcc gggatcaaca attcaaacct
     1741 gatcaacgcc acctctggcg gcgacgtcgg cgcgatcggc gtgggcatcc cggccaatgg
     1801 cggagccggg ccagtgatcg actcccatca actggccggc atctccaaac atacgttcaa
     1861 cgtcgtcggt ctcttcgaaa agggcccggt cggcgtgcgc ctcgcctaca actggcgctc
     1921 gcgctatctc actcagaatc tggactgctg catcggtctg ccggtgttcc agaaggcggc
     1981 cgggttcctc gacgcgtcgg tacgcctctc ggtggccagt ttcctcgagc tgtcaatcga
     2041 cgcaagcaat ctgctcaaca ccagaactgt ctatcagcag cagatcttcg gagactcgcc
     2101 cctgaccccg ggcgtcaagc ccgtatattt tgactcgggc tggagccggg tcgatcggcg
     2161 gttccagttc ggcgctcggg cgaagttcta aaatgacggc tctccccttg ctgcgccgcc
     2221 accagcggcg cagcattttt gggggactcc ttgcagacgc ggggcggcag gtgacatcgt
     2281 ggaacacggc gcatatcgca tcctgatcgt cggcggcggg accgccggct ggatggccgc
     2341 ggcggcgctt cggcggcggc tcgacccggc ggactacagt atcagcctgg tcgaatccga
     2401 cgagatcggc acggtcggag tcggcgaagc aacgctgccg cacatcaaaa tcttcaacga
     2461 tatgctcggc ctcagcgagc ccgagttcat gcgcgctacc cacgccacct tcaagctggg
     2521 catcgaattt tgcggatggg atcggccggg cgatcgctac atccatccgt tcggggcatt
     2581 cggagagcct tggggtggcg tcgaattcca gcaccattgg ctgcgcgcgc aggcgcacgg
     2641 ccgttcggtg gcgccgctgg aggcctattc gtttgccgtg atggcagcga aagcgaatgc
     2701 cttcgacctg cccgatgaag atccggactc gatccgatcg acctactcct acgcatatca
     2761 tttcgatgcc gggcgcttcg ccgactatct ccgggcccat gcgacggaac gcggcgtcgc
     2821 gcgcatcgaa gggcaggtct gcgccgtgga gcgcgagagc gaatccggcg cgctggcagc
     2881 cgtgacgctg aaatccgggc agcgcctgga agccgatctc ttcatcgact gtaccggctt
     2941 ccgctcgctc ctgctcggcg gccagtttgg cgtcgaatgg gaggattgga gccgctggtt
     3001 gccttgcgac cgggcgctcg cggtcccttg cgaccatggc gagggcgggt tcacgcccta
     3061 cacgcgagca accgcgcgga cggccggctg gcaat
//
LOCUS       DASQVK010000035         2312 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_223605,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000035 DASQVK010000000
VERSION     DASQVK010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2312)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2312)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2312
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223605"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            126..833
                     /locus_tag="VE567_00780"
     CDS             126..833
                     /locus_tag="VE567_00780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYZ47407.1"
                     /translation="MTAPNILIVEDDPALRALVTRALKENGFAVRAAAAAPEMWAAFE
                     SGPVDCILLDVMLPGTNGYDLCRALRQRTAAPIIFISAKASETDRVVGLELGADDYLP
                     KPFGTRELVARVRAVLRRPPLAESAARKPDRIVFDGWTVNLPRRELLSPTSAIVELTG
                     AEFDLLVALCDNAGRVIARERLIELSRARLGDSSDRSVDVLVSRLRRKLSGAGHEAPI
                     LTVRGVGYMLNTAVERL"
     gene            830..2143
                     /locus_tag="VE567_00785"
     CDS             830..2143
                     /locus_tag="VE567_00785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYZ47408.1"
                     /translation="MSLLRPTPGLIGRLIAILLLTVLIEFGISTSLYERASHFSVRDD
                     EARRLAEHLVIAERLLAERPPMERPAIANELTTERYLVRWSATPPRMPAIAPPALDGM
                     QRQVLAWEPSLKATALRLWLAEPGRSSVVAGALRLPDGTWIGFRTLHPLTGLDLATER
                     ILLALIPAMGPMLLGGLLVRLTLKPLRRLALAADQIGDGGEAHVPEQGPSEVATVIRA
                     FNRMQARIHQLIENRTQALAAVGHDLRTPLSRLKFRAEAVLDGEARQAIEADIAEMEA
                     MIESLLAYLGGENDPEPPARADVAILCATLADEAADLGHDVTYDGPVHLDLTVRPLAL
                     KRAISNLIHNGVHYATRVVVRLTDATDQATIAVEDDGPGLPEAMLEEAKKPFVRLDMA
                     RPRDTVGFGLGLAIAARAVEREGGRFSLSNRAEGGLRAEVKLPRR"
BASE COUNT          384 a          807 c          749 g          372 t
ORIGIN      
        1 tgcaagcggg ggcctgtcct gagtgccgcg tctcgtgctc gcaatccgat ctcgcgagcg
       61 agttgacatt gaccgccctt tcgttggctc ataccgcgct gagccaatcc gacgaaatcg
      121 aattcgtgac tgccccgaac atcctgatcg ttgaggacga ccctgcgctg cgcgccctcg
      181 tcacgcgcgc gctgaaggag aatggcttcg ccgtccgcgc cgccgccgct gcgccggaga
      241 tgtgggccgc gttcgaaagc gggccggtcg actgcatcct cctggacgta atgctgcccg
      301 gcacgaacgg ctatgacctg tgccgcgcgc ttcgacagcg cactgcggcc ccgatcatat
      361 tcatcagcgc caaggccagc gagaccgatc gggtcgtcgg cctggaactc ggcgcggacg
      421 attacctgcc gaagccgttc ggcacgcgag agctggtcgc gcgcgtccgc gccgtactcc
      481 gccggccgcc gctcgcagag agcgcggcgc gcaagcccga ccggatcgtg ttcgacggct
      541 ggacagtcaa cctgccgcgc cgcgaattgc tctcccccac cagcgccatc gtcgagctga
      601 ccggcgcgga gttcgacctg ctggtggcgc tgtgcgacaa tgccggccga gtgatcgcgc
      661 gcgagcggct gatcgagctt tcccgcgcgc gccttggcga cagctcggac cggagcgtcg
      721 acgtgctggt aagccgtctc cgccgtaagc tttccggtgc cggccacgaa gcgccgatcc
      781 tgaccgtgag gggcgtgggt tatatgctca acacggcggt cgagcggctg tgagcctttt
      841 gcggccaaca cccgggctga ttggccggct gatcgcgatc ctgctgctga cggtgctgat
      901 cgagttcgga atcagtacgt cgctctatga gcgcgcaagc cacttctcgg tgcgcgacga
      961 cgaggcgcgg cggctcgcgg agcatctggt gatcgcggaa cgattgctcg ccgaacgccc
     1021 gccaatggag cggccggcga tcgcgaacga gcttacgacc gagcgttatc tcgtgcgttg
     1081 gagcgccacg ccgccgcgaa tgcccgcgat cgcgcccccg gcgctggacg gcatgcagcg
     1141 ccaggtgctc gcctgggagc cgagcctgaa agcgaccgcg ctacggctct ggctggctga
     1201 gcccgggcgc agctccgtcg tcgccggtgc gctgcgcctg cccgacggca catggattgg
     1261 cttccggacc ttgcacccgc ttaccggcct cgatctcgcg accgaacgga tcttgcttgc
     1321 gctgatacct gcgatgggac cgatgctgtt gggaggcctg ctggtccggc taacgctgaa
     1381 gccgctgcgc cggctcgcgc tcgcagccga tcagatcggc gacggcggcg aagcgcatgt
     1441 gcccgaacag gggccgagcg aagtggcaac cgtgatccga gcgttcaacc ggatgcaggc
     1501 gcgtatccac caattgatcg agaatcgcac ccaggcgctc gccgcggtcg gccatgacct
     1561 gcgcacgccc ctgtcccgcc tgaagttccg cgcagaagcc gtgctcgacg gcgaagcgcg
     1621 ccaggcaatc gaggccgaca tcgccgagat ggaagcgatg atcgagtcac tgctcgccta
     1681 tctgggcggc gagaacgacc ccgagccgcc ggcccgggcc gacgtcgcga tcctctgcgc
     1741 gaccctcgcc gacgaagccg ccgacctcgg ccatgacgtc acctatgacg gcccggtcca
     1801 tctcgacctt actgtccgcc cgctcgccct caaacgcgca atttcgaacc tgatccataa
     1861 tggggtccat tacgccacac gggtcgtggt ccgcctcacc gatgcgacgg accaggcgac
     1921 gatcgccgtg gaggacgacg gtccgggctt gcccgaagcc atgctggaag aagcgaagaa
     1981 gcccttcgtt cgcctggaca tggcccggcc ccgcgacacg gtcggcttcg gcctgggcct
     2041 cgccatcgcc gctcgcgcgg tcgaacggga gggcgggcgc ttcagcctga gcaaccgcgc
     2101 ggaagggggc ttgcgggcag aagtcaaact cccccgccgc tgagcaacat ttccttacac
     2161 ttcagccgaa cgccggcaaa acgcgcaccc taagtcacct ccacaaacac ggaggtactc
     2221 aagtgaatga gctgatcgga cgcgttctga actttcagcg cgacgttttc cccatccgtt
     2281 ccggcctata cgagcggctc gccaccaacg ga
//
LOCUS       DASQVK010000036         9251 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_223681,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000036 DASQVK010000000
VERSION     DASQVK010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 9251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9251)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9251
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223681"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..295)
                     /locus_tag="VE567_00790"
     CDS             complement(<1..295)
                     /locus_tag="VE567_00790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C biosynthesis protein"
                     /protein_id="HYZ47409.1"
                     /translation="MGWLIILGLVALTGGALWKWGHLPRAAFEPIAAALLLGLAGYAL
                     QGRPDLPGHPVAAPDSGSKANEAEIEIRNKMGQQRFGSGPNWLMAADGAMRAGS"
     gene            complement(295..699)
                     /locus_tag="VE567_00795"
     CDS             complement(295..699)
                     /locus_tag="VE567_00795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019052072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein"
                     /protein_id="HYZ47410.1"
                     /translation="MRRLIFALSLIAAAPVLADSALPAAKWANEQLPDASQEGQAKAL
                     MLTIRCIVCQGQSIADSDAELAGDMRAMIRTRIAAGEKPEAIRAWLIERYGQWVSYKP
                     EVEPITWPLWAAPLLLLVIGAFLARGRFRRHG"
     gene            complement(696..1223)
                     /locus_tag="VE567_00800"
     CDS             complement(696..1223)
                     /locus_tag="VE567_00800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004207282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbE family thiol:disulfide interchange protein"
                     /protein_id="HYZ47411.1"
                     /translation="MKRFWLWVPLIGFVIFFGVVATGLIKPENRTIASKMIGKPVPAF
                     DLPAGAPDRTAFSSKDLADGQPRLLNVFASWCVPCIAEAPNLMELKRRGVKIDAIAIR
                     DRPEDVAAFLARNGDPYDRIGSDTASRVQLAMGSSGVPETFVIDGKGVIRYQHIGDIR
                     PENIPELIERLEKAR"
     gene            complement(1220..3142)
                     /locus_tag="VE567_00805"
     CDS             complement(1220..3142)
                     /locus_tag="VE567_00805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HYZ47412.1"
                     /translation="MIAEAGLAALWLAAALSLLQLIMGAVALTPGREQAAAIVRPVAV
                     VQGLLTLLAFALLITLFVTSDMSVKLVAANSNSMKPLLYKFAGTWGNHEGSMLLWVTI
                     LGIAGAAVAIFERRVSERMLVATLAAQAAIGLGFFAFLLFSSNPFERLPIPAADGQGL
                     NPLLQDPGLAFHPPTLYLGYVGLSVAFSFAVGALVTREVNAAFARAMRPWVLAAWILL
                     TLGITAGSYWAYYELGWGGWWFWDPVENASLMPWLAATALLHSVTVLATRDSLRAWTV
                     MLAVVAFSMSMVGTFLVRSGILTSVHAFAVDPERGSFILALLAIYIGGALALFALRVS
                     TVKEGTQFDPVSREGLLVGNNLLLTAILGIVFIGTLYPLAVEGLSGEKLSVGPPYFNM
                     AAGPIALLLVALMAAGPLTRWRRDQIGMVVRRLALPILLTAIVLLLAVLLAPPLGLLP
                     MLGLVLAIGVAAGSVAPLWGRNLRRTPMFTWGMVIAHLGIAVALAGMACDSSFTKETL
                     VAARLGETKQVGPWSVRLDSVEPVAGPNWTALEATLTAARGAASITLRPQARSWPNPP
                     TETSESAIATRWNGQLYTVLGKEDEDGRWQLRLWWKPFVTLIWLGGGMVAFGGALSLL
                     GRVRRERRYQDRIAYA"
     gene            complement(3139..3585)
                     /gene="ccmE"
                     /locus_tag="VE567_00810"
     CDS             complement(3139..3585)
                     /gene="ccmE"
                     /locus_tag="VE567_00810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HYZ47413.1"
                     /translation="MKAKHQRLTLALLALAALIGAGLLAASALRDQAAYFYSPADLQR
                     NPVPPGKHMRLGGMVADHSIVKQPDGVTIDFVVTDGPATTKVRFRGIPPDLFKEKSGV
                     VAEGAFAPDGVFVADTILAKHDERYMPPELARKNGKVEHKTETLER"
     gene            complement(3582..3710)
                     /gene="ccmD"
                     /locus_tag="VE567_00815"
     CDS             complement(3582..3710)
                     /gene="ccmD"
                     /locus_tag="VE567_00815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HYZ47414.1"
                     /translation="MSHWPYIIAAYALTIGGMAGLALVSWLRMRTAERDAEAVRRK"
     gene            complement(3707..4423)
                     /gene="ccmC"
                     /locus_tag="VE567_00820"
     CDS             complement(3707..4423)
                     /gene="ccmC"
                     /locus_tag="VE567_00820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015456907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015232 - heme transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease CcmC"
                     /protein_id="HYZ47415.1"
                     /translation="MHAFANPARFLSIARPLTPWLLWLGAALSAYGFYAGLFITPPDY
                     LQGESVRIMYVHVPAAWLGMGGWTGLAVASLTQLVWRHPLAGVAARAIAAPGALFTAI
                     CLVSGSIWGSRTWGTWWQWDGRMTSMLVLLFLYFGYIALANAGDEKVGVSKATAIFGL
                     IGAVNLPIINRSVVWWNSLHQGPSITMRGSTIAPEILWPLAFTTLGFTLMFAAIVLMR
                     MRTRLAAAKVEARLRRLATA"
     gene            complement(4495..5541)
                     /locus_tag="VE567_00825"
     CDS             complement(4495..5541)
                     /locus_tag="VE567_00825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase dimerization
                     domain-containing protein"
                     /protein_id="HYZ47416.1"
                     /translation="MTAWDLPDFDDHEGVHLFRDRASGLTAIIAVHSTALGPAAGGVR
                     FWHYPNRQDAVTDALRLSRGMSYKNAMANLPLGGGKGVILADRSGAKTASLLQAFGKA
                     VDSLGGRYVTAEDVGISTDDMVAISKETKFVSGLPVAQGSAGGDPGPFTSYGIFLGVK
                     AAVQRALGKDSMSGVHVAIQGVGSVGGGLARLLAEEGAQLTLADVNADRARALADELG
                     GKAVGADEILAVEADVVSPNALGAILTEQSIAALKTPIVAGGANNQLATPEDGDRIHA
                     RGILYAPDYVINAGGIINVGLEYLGRGDEAEVRARIRLIPDRLEQVWAESAETGDPAA
                     RVADRIAQRLIGRG"
     gene            complement(5571..5647)
                     /locus_tag="VE567_00830"
     tRNA            complement(5571..5647)
                     /locus_tag="VE567_00830"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5611..5613),aa:His,seq:gtg)
     gene            complement(5722..6432)
                     /gene="gspN"
                     /locus_tag="VE567_00835"
     CDS             complement(5722..6432)
                     /gene="gspN"
                     /locus_tag="VE567_00835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein N"
                     /protein_id="HYZ47417.1"
                     /translation="MRLRVPMRRAVLFAALFAFALILFLPLRLALGLIDSGLSAREAS
                     GTVWAGSLKEARFGPATLGDLNARLAFPPLLLGRARVELERPSAAPDRLAGAFGIAGN
                     RRSVESVTGLIPVESRFGPLPIASFELTDLTVRFRDGACDRAEGLVRANLSGEVAGLS
                     LPAGLSGAARCDRGALLLPLASGAGMEGMALRIYGDGRYEARLNARATDPAVVARLTG
                     AGFTLGPGGYETVIRGKL"
     gene            complement(6432..6908)
                     /locus_tag="VE567_00840"
     CDS             complement(6432..6908)
                     /locus_tag="VE567_00840"
                     /inference="COORDINATES: protein motif:HMM:NF016493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein M"
                     /protein_id="HYZ47418.1"
                     /translation="MKAQFLAWWRERSLREQRMLLVMFAAVAVTFLWLGVYRPVGNAL
                     SHARERHQEAVVRLGEVRAQADALRELQKTGLPALPAPVAAVITQSANEAGFANATIA
                     PQGDRRATVSIPSARPAAIMAWVAAQEGRGIVVERFAARANNDQTLAVDLTLAGGA"
     gene            complement(6905..7978)
                     /gene="gspL"
                     /locus_tag="VE567_00845"
     CDS             complement(6905..7978)
                     /gene="gspL"
                     /locus_tag="VE567_00845"
                     /inference="COORDINATES: protein motif:HMM:TIGR01709.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspL"
                     /protein_id="HYZ47419.1"
                     /translation="MSALILFIAPDDRLHGWWIVRDGGLAERGEADTPLPDDPPERIV
                     AIAPASAMTLHVAELGSLATQQARTAARLLVAETSVAPIETQHVAVGEADGPDRSVAV
                     IGNGRMSAWLEALQARGIDPDMILPAPLLLPRPETGFVRASLGGETVLRGRNAAFADD
                     PDLTELLVGDAQVEDVDPEPLILAALDAAELDLRQGEFAKRRRFRIDWPLVRRLAVLG
                     GAIAAVTLLISLVQIVRYGFGADALDAQAEAIAQAAVPNAGPNPVSTMQARLAARRGS
                     GLGFTTTAGAVLSAVKAVPNVELASLDFDADGLMRATILAPGAAEAEALRTRLRATGL
                     SVEATPFTAENGRIRGEFRIGRP"
     gene            complement(7975..8946)
                     /gene="gspK"
                     /locus_tag="VE567_00850"
     CDS             complement(7975..8946)
                     /gene="gspK"
                     /locus_tag="VE567_00850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014075708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspK"
                     /protein_id="HYZ47420.1"
                     /translation="MKASERGAALLTVLLLVSVMAVLSASALERLRLSTRLAANAGAI
                     DQARAYALAAEQIAASRISSLVDADPARTPLGWAGRETNLPLPGGIATAVVRDGGNCF
                     NLNSVVSGQAGTPLIARPVGIAQFENLMQILGIGEGEAHKVAVSLADWIDSDTQAQPD
                     GAEDGAYAGGETPYKTANTLIADPSELRAVAGVTPELYEKVRPWVCALPATDLSPLNV
                     NTLTPEQAPLLAMLQPAIISPDRARALIAGRPVGGWESTTQFWQQFASQGQVIDLGVQ
                     QQLFVRTRWFGLHLHVQLGDSEVDETALIDASVPPAKLVRRNWGEGI"
     gene            complement(8943..>9251)
                     /locus_tag="VE567_00855"
     CDS             complement(8943..>9251)
                     /locus_tag="VE567_00855"
                     /inference="COORDINATES: protein motif:HMM:NF023044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspJ"
                     /protein_id="HYZ47421.1"
                     /translation="VRAGVDPLEDSTRPALQKVTYRVEGGRLLRQAWSMLDGAAANPP
                     AVLAEGVAAVTLRYRAKDGWREIWDPLRPDLLPRAIEMIVQPVRGPTMRYLFLVGAGA
                     "
BASE COUNT         1603 a         3224 c         3110 g         1314 t
ORIGIN      
        1 gcgagccggc gcgcatcgcg ccgtcggcgg ccatcagcca attgggaccg ctgccgaagc
       61 gctgctggcc catcttgttg cggatctcga tctccgcttc gttcgccttg gagccgctat
      121 caggcgcggc gaccggatgg ccgggcaagt cgggacggcc ttgcagggca tagccggcca
      181 gcccgagcag cagtgcggcg gcaatcggct cgaacgcagc gcgcggcaga tggccccatt
      241 tccagagggc gcccccggtg agcgcgacaa ggcccaggat gatcaaccag cccatcagcc
      301 gtgcctcctg aaccgcccgc gcgcgagaaa ggcgccgatg accagcagca gcaggggcgc
      361 agcccaaagc ggccaggtga tcggctcgac ctcaggcttg tagctcaccc attggccata
      421 gcgttcgatc agccacgcac ggatcgcctc gggcttctcg cccgccgcga tgcgggtacg
      481 gatcatcgcg cgcatgtcgc cggcaagctc ggcatccgaa tcggcgatcg actggccttg
      541 gcagacgatg caacggatgg tcagcatcag cgccttggcc tgcccttcct gactggcatc
      601 gggaagctgt tcgtttgccc atttcgcggc gggcagcgcc gaatccgcga ggacgggggc
      661 ggcggcgatc agcgaaagcg cgaagatcag ccgcctcacc gcgccttctc cagccgctcg
      721 atcagctccg gaatattttc aggccggatg tcgccgatat gctggtagcg gatcacgccc
      781 ttgccgtcga tcacgaacgt ctccggcacc cccgacgaac ccatcgccag ctgcacgcgc
      841 gaggccgtgt cggagccgat ccggtcatag ggatcgccgt tgcgcgcgag gaaagcggcg
      901 acgtcttccg gccggtcgcg gatcgcgatc gcgtcgatct tcacgccgcg gcgcttcagc
      961 tccatcaggt tcggcgcttc ggcaatgcag ggcacgcacc agctggcgaa gacgttgagc
     1021 agccgcggct ggccgtccgc cagatccttg ctcgaaaacg ccgtgcggtc cggagcgccg
     1081 gccggcaggt cgaaggcggg aacgggcttg ccgatcatct tcgaagcgat cgtgcggttt
     1141 tcgggcttga tcagcccggt cgcgacgaca ccgaagaaaa tcacgaagcc gatcaggggc
     1201 acccagagcc agaagcgctt catgcgtagg cgatccggtc ctggtagcgc cgctcgcgcc
     1261 gcacgcggcc gagcagcgac agcgcgccgc cgaacgcgac catcccgccc ccaagccaga
     1321 tcagcgtcac gaacggcttc caccagagac ggagctgcca gcggccgtcc tcgtcttcct
     1381 tgccgagcac ggtgtagagc tgtccgttcc agcgcgtggc gatggcggac tcgctcgtct
     1441 cggtcggcgg attgggccag cttcgcgcct ggggcctgag cgtgatcgag gcggcgccgc
     1501 gtgccgcggt gagcgtggct tcgagcgcgg tccagttcgg gcctgcgacc ggttcgactg
     1561 agtccagccg caccgaccag ggaccgacct gtttggtctc gccgagccgg gcggccacca
     1621 aagtctcttt ggtgaacgag ctgtcgcagg ccatgccggc cagcgcgacg gcgatgccga
     1681 ggtgagcgat caccatgccc caggtgaaca ttggcgtgcg cctgagattg cggccccaga
     1741 gcggtgccac gctgccggcc gccacgccga tcgcgagcac cagccccagc atcggcagca
     1801 ggccgagcgg cggcgccagg agcacggcca gcagcagcac gatcgcggtc aaaaggatcg
     1861 gcagcgccag acggcgcacc accatgccga tctgatcccg ccgccagcgc gtgagcggcc
     1921 ccgccgccat cagcgcaaca aggagaaggg cgatcgggcc ggcggccatg ttgaaatagg
     1981 gcgggcccac cgaaagcttt tcgcccgaca gcccctcgac tgcgagagga tagagagtgc
     2041 cgatgaacac gatgccgagg atcgcggtca gcagcaggtt gttgccgacg agcaggcctt
     2101 cgcggctcac cggatcgaat tgcgtgcctt ccttcacggt cgagacgcgc agcgcgaaca
     2161 acgccagcgc gccgccgata tagatagcga gcagcgcgag gatgaagctg ccgcgctcgg
     2221 gatcgacagc gaaggcatgg accgaggtca ggattcccga gcgcaccagg aacgtgccga
     2281 ccatcgacat cgagaaggcc acgacggcaa gcatcacggt ccaggcgcgg agagagtcgc
     2341 gcgtggcgag caccgtcacc gaatgcagga gcgcggtggc tgcgagccag ggcatcagcg
     2401 aagcgttctc gaccgggtcc caaaaccacc agccgcccca gcccagctca taataggccc
     2461 aatagctgcc ggcggtgatg ccgagcgtca gcaggatcca tgcagcgagc acccagggcc
     2521 gcattgcgcg cgcaaaggcg gcgttcactt cgcgcgtgac cagcgcgccg accgcgaagg
     2581 agaaagcgac cgagaggccg acatagccga ggtaaagcgt cggcgggtgg aacgctaggc
     2641 cggggtcctg cagcagcgga ttgagcccct gcccgtccgc cgccgggatc ggcagccgct
     2701 cgaacgggtt ggacgagaag agcaggaacg cgaagaagcc gagcccgatc gccgcctgcg
     2761 ccgccagcgt cgcgaccagc atccgctccg acacgcgacg ctcgaagatc gccaccgccg
     2821 cgcccgcgat gcccaggatc gtcacccaga gcagcatcga gccttcgtga tttccccagg
     2881 tgcccgcgaa tttgtagagc agcggcttca tcgagttgct gttcgccgcg accagcttca
     2941 ccgacatgtc cgaggtgacg aacagcgtga tgagcagcgc gaaggcgagc aaggtcagca
     3001 aaccctgcac gaccgcgacg ggccggacga tcgcggccgc ttgctcacgg ccgggtgtca
     3061 gcgcgaccgc gcccatgatc agttgcagca gcgacagcgc cgccgcgagc cataaggccg
     3121 ccaggcccgc ttcggcgatc atcgctccag cgtctccgtc ttgtgctcga ccttgccgtt
     3181 tttccgcgcc agctcgggcg gcatatagcg ctcgtcatgc ttggcgagga tcgtgtccgc
     3241 gacgaacacg ccgtcgggcg caaaggcgcc ttccgcgacc acgccgctct tttccttgaa
     3301 cagatcgggc gggatgccgc ggaagcggac cttggtggtg gcgggcccgt cggtgacgac
     3361 gaaatcgatc gttacgccat caggctgctt cacgatcgaa tggtcggcaa ccatgccgcc
     3421 cagccgcata tgcttgcccg gcggaaccgg gtttcgctgc agatcggcgg gcgagtagaa
     3481 ataggcggcc tggtcgcgca gcgccgaggc ggcgagcaag cccgcgccga tcagcgccgc
     3541 cagcgccagc agcgccagcg tgagccgttg gtgcttggct ttcatttgcg ccggaccgcc
     3601 tccgcgtctc gctccgccgt gcgcatgcgc agccaactga ccagcgccaa gccggccatg
     3661 ccgccgatcg tcagcgcata ggcagcgatg atataaggcc agtggctcat gcggtcgcga
     3721 gcctccgcaa gcgcgcctcg accttggcag cggcgagcct tgtacgcatt cgcatcagca
     3781 cgatcgcggc gaacatcagc gtgaagccca atgtggtgaa cgccagcggc cacagaatct
     3841 caggcgcgat tgtcgagccg cgcatcgtga tgctcggccc ctggtgcagc gagttccacc
     3901 aaacgaccga gcggttgatg atcggcaggt tgaccgcccc gatcagcccg aaaatcgcgg
     3961 tcgccttcga gacgccgact ttctcgtcgc ccgcattcgc cagcgcgata tagccgaaat
     4021 agaggaacag caggacgagc atcgaggtca tccgcccgtc ccattgccac caggtgcccc
     4081 aggtgcggct gccccagatc gagcccgaga cgaggcagat ggcggtgaac aaggccccgg
     4141 gcgcagcgat cgcgcgcgcg gcgacgccgg ccagcggatg ccgccagacg agctgggtca
     4201 ggctcgccac cgccagcccg gtccagccgc ccatgccgag ccaggcggca ggcacgtgca
     4261 catacatgat gcgcacgctc tcgccctgca gatagtcggg cggcgtgatg aacagcccgg
     4321 catagaagcc ataggccgac agtgccgcgc ccagccacaa cagccagggc gtcagcggac
     4381 gcgcgatcga caggaatcga gcaggattgg cgaaagcatg cattgcgagg cgcttaccta
     4441 gcgcagccgg cgtccctaag aaagcgcggc tttacgtcta ttgacgccga agaatcagcc
     4501 gcgcccgatc agccgctggg cgatgcgatc ggcgacacgc gcggccgggt cgccggtctc
     4561 ggcgctctcg gcccatacct gctccagacg gtcggggatg aggcggatgc gcgcgcgcac
     4621 ctcggcttcg tcgccacggc cgagatattc gaggccgaca ttgatgatgc cgcccgcatt
     4681 gatcacgtaa tcaggcgcat agaggatgcc gcgggcatgg atgcggtcgc cgtcctcggg
     4741 cgtggcgagc tggttgttcg cgccgccggc gacgatcggc gtcttcagcg ccgcgatgct
     4801 ctgttcggtg aggatagcgc ccaaggcatt cgggctgacg acatcggcct cgaccgccag
     4861 tatctcgtcc gcgccgaccg ccttgccacc gagttcatcg gccagcgccc gggcgcggtc
     4921 ggcattgaca tcggcaagag tcagctgcgc gccttcctcg gccagcagtc gcgcgagccc
     4981 gccgccgacg ctgccgacgc cctggatcgc gacatggacg ccgctcatgc tgtccttgcc
     5041 aagcgcgcgc tgaaccgcgg cctttactcc caggaagatg ccataggacg tgaacgggcc
     5101 cggatcgccg cccgcgctgc cttgcgcgac gggtagcccc gagacgaact tcgtctcctt
     5161 ggaaatcgcg accatgtcgt cggtcgagat gccgacatcc tcggcggtca catagcggcc
     5221 gccgagcgaa tccaccgcct tgccgaacgc ctggagcagc gacgcggttt tggcgcctga
     5281 gcggtcggcc aggatcacgc ccttgccgcc gcccagcggc aggttcgcca tggcattctt
     5341 atagctcatg ccgcgcgaca gtcgcagcgc gtcggtcacg gcgtcctgac ggttcggata
     5401 atgccagaaa cgcaccccgc cggcggcggg cccgagcgcg gtcgagtgca ccgcgataat
     5461 cgcggtcagc ccgctcgccc ggtcgcgaaa caggtgtacg ccttcatggt cgtcgaaatc
     5521 gggaaggtcc caagctgtca cggaaatgcc cctgatactg attacaaaaa tggggcgatc
     5581 gacggggatt gaacccgcaa cctctggtac cacaaaccag cgctctaacc aattgagcta
     5641 cgatcgccgt gacggcggaa accgcgggcg cgcacatagg agcgctaaac cgcgggcgtc
     5701 aacctttcat tcccgaacgc ttcagagttt gccccggatc accgtctcat atccgccggg
     5761 gccgagagtg aagccggcac cggtcaggcg cgcaaccacg gccggatcgg tcgcgcgggc
     5821 attcaggcga gcctcgtaac ggccgtcccc atagatgcgg agcgccatgc cctccatgcc
     5881 ggcgccgctg gcgagcggca gcaagagcgc gccgcggtcg cagcgggccg cgccgctcaa
     5941 gccggcggga agcgagaggc cggcgacctc gcccgagaga ttggcacgca ccagcccctc
     6001 ggcgcggtcg catgcgccgt cgcggaagcg gacggtcagg tccgtcagct cgaaggaagc
     6061 gatcggcagc gggccgaacc gcgactcgac cgggatcagg ccggtcaccg actcgaccga
     6121 gcggcggttg ccggcaatgc cgaaagctcc ggccagacgg tccggggcgg cactcggccg
     6181 ttcgagctcg acccgcgcgc ggccgagcag cagcggcggg aaggcgagac gcgcgttcag
     6241 atcgcccagc gtcgccgggc cgaaccgagc ttccttgagg ctcccggccc agaccgtccc
     6301 gctcgcctcg cgcgcgctga ggccgctatc gatcaggcca agcgccaagc gcagcggcag
     6361 gaacaggatc agcgcgaacg caaacagcgc cgcgaacagc accgcccggc gcatcggtac
     6421 gcgcagccgc atcaggcgcc tcccgccagg gtcaggtcga cggcgagagt ctggtcattg
     6481 ttcgcgcgcg cggcgaaccg ctcgacgacg atcccgcgcc cctcctgcgc cgcaacccag
     6541 gccatgatcg cagccggccg ggccgaagga atcgagaccg tcgctcgtcg atcgccttgg
     6601 ggtgcgatgg tggcattggc aaagccggct tcgttcgccg attgggtgat caccgccgca
     6661 accggcgcgg ggagtgccgg cagccctgtc ttctggagct cgcgcagcgc atccgcctgg
     6721 gcccgcacct cgcccagccg caccaccgct tcctggtgcc gctcgcgcgc atgggagagt
     6781 gcgttgccga ccgggcgata gacgccgagc cataggaaag tgacggcgac ggccgcgaac
     6841 atgaccagca gcattcgctg ctcgcgcaag ctccgttcgc gccaccaggc aaggaattgc
     6901 gctttcatgg ccggccaatc ctgaactcgc cgcggatgcg gccgttttcg gcggtgaacg
     6961 gcgtcgcctc gacggacagg ccggtcgcgc ggagccgagt gcgcagcgcc tctgcctcgg
     7021 ctgccccggg cgcgagaatg gtcgcgcgca tcagtccgtc ggcatcgaag tccaggctcg
     7081 ccagctcgac atttggcact gccttcactg ccgacaggac ggcgccggcg gtggtggtga
     7141 acccgagccc gctgccgcgc cgcgccgcca gccgggcctg catcgtcgag accggattcg
     7201 ggccggcatt gggcacggcc gcctgcgcga tcgcctccgc ctgcgcgtcg agtgcatcgg
     7261 cgccgaaccc atagcgcacg atctgcacca gggagatgag caaagtcaca gccgcaatcg
     7321 cgccgcccag caccgccagc cgcctgacca aaggccaatc gatccgaaac cggcggcgct
     7381 tggcgaattc gccctggcgc aggtcgagct cggcggcgtc gagcgcggcg aggatcagcg
     7441 gctcagggtc gacatcctcg acctgcgcat cgccgaccag caactcagtg agatccggat
     7501 catccgcaaa agcggcattg cggccgcgca gcaccgtctc cccgccgagg ctcgcgcgga
     7561 cgaagccggt ttcgggccgc ggcagcagca gcggcgcggg caagatcatg tccggatcga
     7621 tgccgcgcgc ctgcaacgct tcgagccagg cggacatccg cccattgccg atcacagcga
     7681 cgctgcggtc cggcccgtcc gcctcgccga ccgcgacgtg ctgcgtctcg atgggggcga
     7741 cgctggtctc ggccaccagc agccgcgcgg cggtgcgggc ctgctgcgtc gcgaggctgc
     7801 cgagctcggc gacgtgaagc gtcatcgcgc ttgccggcgc gattgccacg atgcgttcgg
     7861 gcgggtcgtc cggaagcggc gtatcggcct cgcctcgttc ggcaaggccg ccatcccgca
     7921 cgatccacca gccatgcagc cggtcgtcgg gagcgatgaa gaggatgagc gcgctcaaat
     7981 cccctccccc caattgcgcc ggaccagttt cgcgggcggc acgctggcgt cgatcagcgc
     8041 ggtttcgtcg acttcgctat cgccgagctg gacgtgcaaa tgcagtccga accagcgcgt
     8101 gcgcacgaat agctgctgct ggacgcccag atcgatcacc tggccctggg acgcgaattg
     8161 ctgccagaac tgggtcgtgc tctcccagcc gccgaccggc cgcccggcga tcagcgcgcg
     8221 ggcgcggtcc ggcgagatga tggcgggctg cagcatggcg agaagcgggg cctgttccgg
     8281 cgtgagggtg ttgacgttaa gcggcgacag gtcggttgca ggaagcgcgc agacccaggg
     8341 gcggaccttc tcgtaaagct cgggcgtgac gcctgcaacc gcacggagtt cgctcgggtc
     8401 cgcgatcagc gtgttcgccg tcttgtacgg tgtctcgccg cctgcatagg cgccgtcctc
     8461 ggcgccgtcg ggctgcgcct gggtgtcgga gtcgatccaa tcggcgagcg agaccgcgac
     8521 cttatgcgcc tcgccttcgc cgatgccgag gatctgcatc aggttctcga actgagcgat
     8581 gccgacaggc cttgcgatca gcggcgtgcc tgcctggccg gagacgacgc tgttcaggtt
     8641 gaagcaattc ccgccatcgc gcaccaccgc cgtcgcgatg ccgccgggga gcggcaggtt
     8701 ggtttcgcgc cccgcccagc ccaacggagt gcgcgccgga tctgcatcga ccaagctgct
     8761 gatccgcgag gccgcgatct gttcggccgc cagcgcatag gcgcgcgcct ggtcgatcgc
     8821 gccggcattg gccgctagcc gcgtcgacag ccgcagccgt tccagcgcgg aagcggacag
     8881 caccgccatc accgagacga gcagcagcac tgtcaacagc gccgccccgc gttcgctcgc
     8941 cttcatgcgc ccgcccccac caggaagagg tagcgcattg tcggcccgcg caccggctgc
     9001 acgatcattt cgatggcacg gggcaggaga tcgggacgca agggatccca tatctcgcgc
     9061 cagccgtctt ttgcgcggta gcggagcgtg accgcggcga cgccttccgc cagcaccgca
     9121 ggcgggttcg cagcagcgcc gtcgagcatc gaccaggcct ggcggagcag ccggccgccc
     9181 tcaacgcgat atgtgacttt ttgcaacgct ggccgcgtcg agtcctccag cggatcgacg
     9241 ccggcgcgca c
//
LOCUS       DASQVK010000037         3685 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_287064,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000037 DASQVK010000000
VERSION     DASQVK010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3685
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287064"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(215..472)
                     /locus_tag="VE567_00860"
     CDS             complement(215..472)
                     /locus_tag="VE567_00860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47422.1"
                     /translation="MRLLLLLSALIAGLTGLIAGQPASARAPAAIAAALSGSIEQAKD
                     PAEVQRLPEASAGPARLKRHAEARLRSIAPQSHAVDERRIE"
     gene            600..2054
                     /locus_tag="VE567_00865"
     CDS             600..2054
                     /locus_tag="VE567_00865"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HYZ47423.1"
                     /translation="MRISSSCLPLVAGAGLLLAAFALSAPLNHDESQYVAGAVLAAGR
                     VPFRDFLALQPPLALWAWAPLTLALPGWSFVAIRLSSALFGLVTLIAVANAERRVGSR
                     WRWPIGAALLACSHIFLFTSGVARNDALPGMLLALGMAAGLRGIEGRAGWLGLCGLLL
                     GAAGAAKLSFLPSLATAGLLLIVWHRKIGIGGVAAFSVAALLGLLPLALGWAAAPEAF
                     WFGVFRAGATIPFDWYRQTGDAFDLTLTGKLIGTAGAMLVGPVLVVFLVVAADAQRLA
                     RDPAKLFLLVLAAGGLVGGLLPTPTHPQYLLPLLPPLFALLPATVERVQRPGFVLAVL
                     VVFAIIGAAPSVLALPRGFPAIELERQAHVIGRLAKGPIATLSPDRVADSGWPLDARF
                     ATGPFVFRSGSVLSPEQALNFNVAIPAALAAMFAAAPPAAILVGYEKEWRAGAPAPDQ
                     PLELWARAHGYRALPLSDGRGRLYLAPDRSGDKP"
     gene            2051..3277
                     /gene="argJ"
                     /locus_tag="VE567_00870"
     CDS             2051..3277
                     /gene="argJ"
                     /locus_tag="VE567_00870"
                     /EC_number="2.3.1.1"
                     /EC_number="2.3.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010542939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004358 - glutamate N-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate
                     N-acetyltransferase/amino-acid acetyltransferase ArgJ"
                     /protein_id="HYZ47424.1"
                     /translation="MTAARSPLARPFPDLPPIAGAHPAIARARYKEWDRCDLTFVRLD
                     EGTSVAGVLTRSKCASPEVEWCRKALTLGSARALVVNAGNSNAFTGNRGRAAVEAIAA
                     RAATHLGCRPSDVFVASTGVIGVPLPIDKAEAGLDAAFSAAGCNWLAAAEAIGTTDTF
                     PKGAVQRAVVGDRTVTLSGIIKGSGMIAPDMATMLGFIFTDAAVEPGFLQRLLDAANR
                     RSFSCITVDGDTSTSDTVLTFATGKAGNAPLASHDDAGADAFAAALEALCLDLAQQVV
                     RDGEGASKFIEVEVTGAASDGSAHRIAMSIANSPLVKTAIAGEDANWGRVVMAVGKAG
                     EPAERDRLAIRFGNTIVAREGCAVEGYDEAPVAAHLKGQEIEIGVDLGLGSGRATVWT
                     CDLTHGYISINADYRS"
     gene            3318..>3685
                     /locus_tag="VE567_00875"
     CDS             3318..>3685
                     /locus_tag="VE567_00875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HYZ47425.1"
                     /translation="MRYRLNSAPYDAGWCHCRTCQLNSGSPAMAFATIAYTDYEVVVG
                     AHAVKRFASSDFGWRIFCGECGTPLAVHVTHQPDTLDFSVATLDEPARIAPGFHIFYA
                     SRIPWAEAGDELPRHDRFRP"
BASE COUNT          536 a         1178 c         1295 g          676 t
ORIGIN      
        1 ggttgcggag ctcatcgtcc gtcagcgcgg cgatgttcgt ctcgaagccg ttgatccgat
       61 tgacgatcgg ctgcagcgac ttgacgtagc gttcgttgga agacccgaaa atggccttgg
      121 cgatggcgcc gagcatggaa atacctatcg aatagaagat gcgatcggac gctcaaaggc
      181 gcccagcgac gtggtggata atgcgcgagg cgggctattc gatgcgccgc tcatccaccg
      241 catgcgattg gggggcgatc gaacgcaggc gcgcctcggc gtgccgcttc aggcgggccg
      301 gtcccgccga cgcttccgga aggcgctgaa cctccgccgg atccttcgcc tgttcgatgc
      361 tgcccgacag cgccgccgca attgccgccg gcgcacgtgc cgacgccggt tgcccggcga
      421 tgaggccggt cagacccgca atcagggcgg aaagaagcag tagcagacgc aacgaggagg
      481 aatccctgtt tccagccaat cgctcgtcac atagtgctgc cccggccccg cgtccactgg
      541 cagcgcacgg cggtatcaaa gcggttgccg gggagacccg gggccggcat ggcgcggcga
      601 tgcggatcag ctcctcgtgc ctgccgctcg tcgccggggc gggcctcttg cttgcggcgt
      661 tcgcgctctc cgcgccactc aatcatgacg agagccaata tgtggcgggc gcggtgctgg
      721 ccgccgggcg ggttcctttc cgcgacttcc tcgcgctgca gccgccgctt gcgctttggg
      781 cctgggcgcc gctgacgctg gccctccccg gctggagctt cgtcgcgatc cgcctgtcct
      841 cagcgctttt cgggctggtg acgctgatcg ctgtcgccaa tgcggagcgg cgtgtgggat
      901 cgcgctggcg ctggccaatt ggagcggcgt tgctagcgtg cagccacatc tttcttttca
      961 cgagtggcgt cgcccgcaac gacgccttgc cgggcatgct tcttgcgctt ggtatggcgg
     1021 ctgggcttag gggtattgag ggaagagcgg gctggcttgg cctgtgcggg cttctgctcg
     1081 gcgcggccgg cgcggcaaag ctgtccttcc tgccgtcgct ggctacagcg gggctgttgc
     1141 tgatcgtctg gcaccgcaag attgggatcg gcggcgtggc ggcgttttcg gtggccgcgc
     1201 tgctcgggct gctgcccctt gcgctgggct gggcggccgc accggaggct ttctggttcg
     1261 gcgtgttcag agccggcgcg acaatcccgt tcgactggta ccggcaaacg ggagatgcgt
     1321 tcgacctgac gctcacggga aagctgatcg gcacggcggg cgcaatgctg gtggggccgg
     1381 tgctggtcgt gttccttgtg gtggcggcgg acgcccaacg gctcgctcgc gatccggcca
     1441 agctgttcct ccttgtgctg gcggccgggg gcttggtcgg cggtctgcta ccgacgccga
     1501 cccatccgca atatctgctg ccgctgctgc ctccactttt cgcattgctg ccggccaccg
     1561 tcgaacgcgt ccagcgcccg ggtttcgtat tggcagtgct cgtcgtcttt gcgatcatcg
     1621 gtgcggcgcc gtcagtgctg gcgctcccgc gcggctttcc tgcgatcgag ctcgaacgcc
     1681 aagcccatgt aatagggcgc cttgccaagg gcccgatcgc cacgctgtct ccggatcgcg
     1741 tcgccgattc cggctggccg ctcgatgccc gctttgccac gggtccattc gtctttcgga
     1801 gcggatcggt gctgagcccg gagcaagcac taaacttcaa cgtggcgatt cctgccgcgc
     1861 tggccgccat gttcgctgcc gctccgcccg ccgcgatcct ggtcggctat gaaaaagagt
     1921 ggcgcgcagg cgcgcccgcg cccgaccagc cgctggagct atgggcgcga gcgcacgggt
     1981 atcgcgcttt gccgttgtcc gacgggcgcg gaaggctcta cctcgcgccc gaccgatccg
     2041 gagacaagcc atgaccgcag cccgctcgcc gctcgcgcgg ccctttcccg accttccgcc
     2101 cattgccggc gcgcaccctg caatcgcccg cgcccgctac aaggaatggg accggtgcga
     2161 cttgactttt gtcaggctgg acgagggcac atcggtggcg ggcgtgctga cgcgcagcaa
     2221 atgcgcttcg ccggaagtcg aatggtgccg caaggcgctg accctgggct cggcccgcgc
     2281 actggtggtg aatgcaggca attcgaatgc gtttaccggc aatcgcggac gcgcggcggt
     2341 cgaggcgatt gcggcgagag cggcgacgca tctcggctgc cggccgtcgg acgtgtttgt
     2401 cgcctcgacg ggcgtgatcg gcgtgccgct gccgatcgac aaggccgagg ccgggctgga
     2461 tgctgcgttc agcgcggcgg gatgcaactg gctggcggca gccgaggcga tcgggacgac
     2521 cgataccttc cccaaaggcg cggtgcagcg ggcggtggtt ggtgaccgca cagtgacgct
     2581 cagcggcatc atcaagggct cgggcatgat tgcgcccgac atggcgacga tgctggggtt
     2641 catcttcacg gatgccgcgg tggagcctgg gtttctgcag cggctgctgg atgcggcgaa
     2701 ccggaggagc ttttcctgca tcaccgtgga tggcgatacc tcgacctcgg acactgtgct
     2761 gacctttgca acgggcaagg cggggaatgc tcccctcgcc tcccatgacg atgccggcgc
     2821 ggacgcgttc gcggcggcgc tggaggcgct ctgcctggat ctcgcacagc aggtcgtgcg
     2881 cgacggcgaa ggcgcgtcca aattcattga ggtcgaagta acgggtgctg cgagcgatgg
     2941 cagcgcacac cggatcgcga tgagcatcgc caactcgccc ctggtgaaga ccgcgattgc
     3001 tggcgaggac gcaaattggg gccgagtcgt gatggcggtg ggcaaggcag gcgagccggc
     3061 ggagcgcgac cggctcgcga tccgtttcgg caacacgatc gtggcgcgcg agggttgtgc
     3121 ggtcgagggc tatgacgaag cgccggtcgc ggcgcatctg aaaggccagg agattgagat
     3181 tggcgtcgat ctgggcctcg ggtcggggcg cgcgacggtt tggacctgcg acctgactca
     3241 cggctatatc tcgatcaacg ccgactatcg gagttgaggc gatgagcgat tggacgggtg
     3301 gatgcctgtg cggggcggtg cgctaccggc tgaacagcgc gccttacgac gccggctggt
     3361 gtcattgccg cacgtgccag ctcaactccg gctcgccagc catggccttc gcgaccatcg
     3421 cctacacgga ctatgaagtc gtcgtaggcg cccatgccgt gaagcgtttt gcttcaagtg
     3481 actttggctg gcggatattt tgcggcgaat gcggcacgcc gctcgccgtt catgtcacac
     3541 atcagcccga cacactggat ttcagtgtcg cgacgctgga tgagccggcc cgcatcgcgc
     3601 cgggcttcca catcttttac gcaagccgga tcccgtgggc cgaggcggga gacgagctcc
     3661 cccgccacga ccggttcagg cccga
//
LOCUS       DASQVK010000038         5742 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_287109,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000038 DASQVK010000000
VERSION     DASQVK010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5742)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5742)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5742
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287109"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..491
                     /locus_tag="VE567_00880"
     CDS             <1..491
                     /locus_tag="VE567_00880"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HYZ47426.1"
                     /translation="IAGYCLGAGMEIATSCDIRAAATNAKFGMPEVRYGVPSGMEACL
                     IPSLVGWGKARELVYTGDIIDAAEAYHFGYVEKLVPLDELDVQIERWVSSICKSGPRA
                     IRIQKELIRDWEQMSVSDAVQAGIRAVGRAHTTDEPKRLMTEWREKQAAKAAAKEKAG
                     IN"
     gene            508..1281
                     /locus_tag="VE567_00885"
     CDS             508..1281
                     /locus_tag="VE567_00885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006950756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HYZ47427.1"
                     /translation="MDTGAVITARDGAVGIVRLCREDKLNALDLAARKALACAFEELA
                     ADDAIRVIIVTGGKKVFAAGADLALLAGKGSGAIRALDLLGYWRPVAECTKPVIAAVS
                     GYALGAGCELALMCDIIIADSSAQFGLPESRVGIMPGAGGTQRLVRVLGKHVTSHLLM
                     TGGTLDAGRAYALGLVCELAQDGGTEALALEHAKRIARQPPLALQAIKRALAVGADLP
                     LTAANALENREFLLLFDSDDAQEGIAAFLEKRRPLFKGV"
     gene            1285..2775
                     /locus_tag="VE567_00890"
     CDS             1285..2775
                     /locus_tag="VE567_00890"
                     /inference="COORDINATES: protein motif:HMM:NF006124.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase"
                     /protein_id="HYZ47428.1"
                     /translation="MATNEKIGVVGAGVMGRGIAQLFAQSGFSVTLFDAEPGVAANAR
                     AAVLELLSRQVEKGKLTAANLVGIAARLGTCASLDEFSGCDIVIEAVVEDLSVKQAIF
                     GQIERVVDASAIIASNTSSLTISALAAVCTTPERVAGLHFFNPVPLMKIVEVIPGIRT
                     DPAVSARLAELVARTGHRSVLAADQPGFLINHAGRALYTEGLRIIEENAADAATVDLV
                     MRESCGFRMGPFELLDLTGLDVSGKVMQSIFDQFQHDPRYRPSSLIPPRIAAGLYGRK
                     SGRGFYDYAQGAPTRPAEPPVPPATNGKVWIEPGDAASDIAALLRRGGAQSVDSPAEA
                     DVQLVLPLGEDATAAAIRHGLDAGRVVALDRLIPSDKRQVIMAPPGADPTATARVAGW
                     IAAAGVSVSIIGDSTGFIAQRILSMIVNTGCEIAQRKIASPMDIDTAVTIGLGYPKGP
                     LELGDAIGPARVLQILSAIQTLSGDPRYRPSPWLRRRASLGRNLMD"
     gene            complement(2854..4284)
                     /locus_tag="VE567_00895"
     CDS             complement(2854..4284)
                     /locus_tag="VE567_00895"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007682015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HYZ47429.1"
                     /translation="MSYPELGLYIGGAWIMDRKGEPVINPADGTVVANLPHASGDDLD
                     AAVAAAVRGFERWRRTDPAERERIILRAADNLAARGEEIAQALVLDQGKTIAEARSEV
                     RTACERIGWDAGEARRLYGRIVPTNGALRKFVTRHPLGVVAAFTPWNYPLASPTRKVA
                     GALAAGCSIILKGAEETPAGAVELVRAFAEAGVPDGVVNLVFGKPSDISSCLIPKPEV
                     RLVTFTGSVPVGKQLAALCGQHMKPAIMELGGNSPVVIWDDVDAAKVAALSVTGKARN
                     AGQVCVSPTRFFVHDRVHDAFVEHLAEGARALRIGTGADPELQMGPLANPRRLEAVEA
                     YVADAVDRGARLLAGGARARNQGFLYPLTVLADVPDAARAMTEEPFGPVALVQRVSDL
                     DEAIAKSNSIDFGLAAYAFTDRASVAARLSEEIACGSLSINHYTSSFPDIPFGGIKDS
                     GYGREGGTEGLDCYTFTRAVTQLPLG"
     gene            4449..>5742
                     /locus_tag="VE567_00900"
     CDS             4449..>5742
                     /locus_tag="VE567_00900"
                     /inference="COORDINATES: protein motif:HMM:NF024994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HYZ47430.1"
                     /translation="MKRPVYTYEQMRRLIAPQSVALVGLSRKEGSFGARTAINLKHFE
                     GQLYGVNPNADELWGIPCHASLRSLPEPPDCVVLAIPADAVLATVEEAAAAGVGGCII
                     FASGFAETGVPDQVAIQDKLAAIARASGMRIAGPNCLGLINNVLRAGMSFTSGYAEPP
                     RPGPIAIVSQSGGLGQSIAQVGQRGGSWSHLLAAGNSCDVDVCDYMSYLADDPSCSVI
                     ACIAEGVADGDRLIEAGERALAADKPIVMYKIATGSAGAKAAMSHTGTLAGSNAAYDA
                     AYRRLAVVKADNIEDVYETATFLAKAGRPKARGVAAMAASGGACVIALDKAEQFGVDM
                     PLPEAATRAILESNVPSFGNPTNPCDITAQVATNPQSYSACAGALLADPNYGALVIMT
                     PSVIPDRTPGNVAMFGELAAAAGKPVCLSWMSEWKEGPG"
BASE COUNT         1064 a         1801 c         1838 g         1039 t
ORIGIN      
        1 ggatcgcggg ttattgcctc ggagccggca tggagattgc gacctcgtgc gacatacggg
       61 ccgccgccac caacgcgaaa ttcgggatgc cggaagtccg gtacggagtg ccgtcgggga
      121 tggaggcgtg cctgatccca tcgctcgtgg ggtggggcaa ggcgcgggaa ctcgtctata
      181 ccggcgacat catcgacgcg gccgaagcat atcatttcgg atatgtcgaa aagctcgtgc
      241 ccctcgatga actcgacgtt cagatcgaac gctgggtgag ctcgatctgc aaatcgggcc
      301 cgcgggccat ccgcatccag aaggagttaa tccgcgattg ggagcagatg tcggtctccg
      361 acgctgtcca agctggcatt cgagcagtcg gccgcgcgca tacaaccgat gaaccgaagc
      421 gcctgatgac ggaatggcgc gagaagcagg ctgccaaagc ggcggcaaag gaaaaggccg
      481 gcatcaacta aaccagcggg gtacaccatg gatacaggcg cggtcatcac tgcgcgggac
      541 ggtgccgtcg ggatcgtccg cctgtgccgc gaggacaagt tgaatgccct cgatctggcc
      601 gcgcgaaaag ccctggcatg cgcctttgag gaactggccg cggacgacgc gatccgtgtc
      661 atcatcgtca ctggcggcaa gaaggttttc gccgcggggg ccgacctggc ccttctggct
      721 ggcaagggat ccggcgcaat cagggcgctc gacctgctcg gctattggcg gcccgtggca
      781 gaatgcacga agccggtcat tgcagcggtc tccggctacg ccctgggcgc gggatgcgag
      841 ctcgcgctga tgtgcgacat catcatcgcc gactccagcg cacagttcgg cctgcccgaa
      901 agtcgcgtgg ggatcatgcc gggagccggc gggacgcaac ggctcgtccg ggtgcttggc
      961 aagcatgtga caagccactt gctcatgacc ggcggcactc tggatgccgg acgtgcttat
     1021 gctctaggtc tggtttgcga actcgcccag gatggtggca ccgaagcgct tgcactcgaa
     1081 catgcaaagc gcattgcgcg gcagccaccg cttgcgcttc aggcaatcaa gcgggcgctc
     1141 gcggtcggcg cggatctccc gctgacagcg gccaacgctc tcgaaaatcg ggaattcctg
     1201 ttgctgttcg acagcgacga cgcccaggag ggcatcgccg cctttctgga gaagcgccgt
     1261 cccctattca aaggcgtctg aacaatggcc acgaacgaga agatcggtgt cgtcggcgcg
     1321 ggtgtgatgg ggcgaggcat cgcccaactc tttgcccaat cgggcttttc ggtcacactg
     1381 ttcgacgccg aaccgggcgt tgccgctaac gcccgcgccg cggttctcga gctgctcagc
     1441 cgccaggtcg agaagggcaa gctgaccgcc gcgaacctag taggcatagc ggcgcgcctt
     1501 ggcacctgcg cgtcgctcga cgaattttcc ggatgcgata tcgtcatcga ggcggtcgtc
     1561 gaggaccttt ccgtcaagca agccatcttc ggacaaatcg agcgcgtcgt cgacgcaagc
     1621 gcgatcatcg caagtaacac gtcgtcactc accatcagtg ccctcgcggc cgtctgcacc
     1681 acaccggagc gtgttgccgg actgcatttc ttcaatccag ttccgctaat gaagatcgtc
     1741 gaggtaattc ccggaatccg gacggacccg gcggtatcgg cacggcttgc ggaactcgtg
     1801 gcgaggaccg gccaccgaag cgtcctcgct gccgatcagc ccggctttct gatcaatcat
     1861 gcgggccgcg cgctttatac agaaggcctg cggatcatcg aggagaacgc cgccgacgcc
     1921 gcaaccgtcg atttggtaat gcgcgagagc tgcgggtttc ggatgggtcc gttcgaactc
     1981 ctcgacctca ccgggctcga cgtgtcgggc aaggtcatgc aatcaatctt cgaccagttc
     2041 cagcacgacc cgcgctatcg cccttcgtcg ctcattccgc cgcggatcgc ggctggtctt
     2101 tacgggcgaa agtcggggcg cggcttctac gattatgcgc aaggcgcgcc gacacggcca
     2161 gccgagccac cagtgccgcc tgcaaccaat ggtaaggttt ggatcgagcc tggcgatgcc
     2221 gcctccgaca ttgcggctct tcttcgccgg gggggagcac aaagcgtcga ctcaccggcc
     2281 gaggcggatg ttcagctggt gcttccattg ggtgaggacg ccacagcagc ggcgatccgc
     2341 cacggcctcg atgccggccg ggtcgtcgcg ctcgaccggc tcattccttc cgacaagcgc
     2401 caggtcatca tggctccgcc cggcgcggac cccacggcaa cagcgcgtgt ggccggctgg
     2461 atcgcagccg cgggtgtttc ggtcagcatc atcggcgaca gcaccggctt catcgcgcag
     2521 cgcatcttgt cgatgatcgt caatacggga tgcgagattg cccagcggaa gatcgcttcg
     2581 ccgatggaca tcgataccgc ggtcaccatt ggcctgggat atcctaaagg tccattggag
     2641 ctgggcgacg caatcggtcc tgcccgcgtc ctccagatat tgtccgcgat ccagacgctt
     2701 tccggcgatc ctcgttaccg tccaagtccc tggctccgtc gtcgcgccag tttgggacgt
     2761 aatctcatgg actgagacgg tctgtgaatt aagcggaccg accttcgcag gatttggcct
     2821 ttgaggatcg accgccgctc ggctgacgcc tcgtcagccg agcggcagct gcgtcacggc
     2881 acgcgtgaag gtgtagcagt cgagaccttc cgtgcctcct tcccgcccat agccgctgtc
     2941 tttgatgccg ccgaatggga tgtcggggaa agatgaggtg taatgattga tcgacaggct
     3001 gccgcacgcg atctcctcgg acaggcgtgc ggccaccgag gcgcggtcgg tgaacgcata
     3061 ggcggcaaga ccgaaatcga tcgagttgga cttggcgatc gcttcgtcga gatcggagac
     3121 gcgttgaacg agggcgacag gtccgaatgg ttcttcggtc atggcgcgcg cagcgtcggg
     3181 aacatccgcc agcacggtca agggatagag aaacccctgg ttgcgggctc gcgccccgcc
     3241 ggccaggagc cgcgccccgc gatccacggc gtcagcgaca taagcttcca cggcctcgag
     3301 tcgacgcgga tttgcaagcg ggcccatttg cagctccggg tcggcgccgg tcccgatacg
     3361 caacgctctc gcgccctcgg cgagatgctc gacgaatgcg tcatggacgc gatcgtgtac
     3421 gaagaagcgc gtcggtgaga cgcagacctg accggcgttg cgcgcctttc cggtaaccga
     3481 aagggcagcg actttcgctg catcgacatc gtcccagatg acgacaggag agttccctcc
     3541 aagctccatg atggcaggct tcatatgctg gccgcaaagc gcggccagct gtttgccgac
     3601 cgggaccgac cccgtgaagg tgacaagacg aacttcaggc ttggggatga ggcaggagga
     3661 aatatccgac ggcttgccga agaccagatt gacgacgccg tcgggaacac cggcttctgc
     3721 gaaggcacgg acaagctcga ctgcgccggc aggcgtttcc tccgccccct tcagaatgat
     3781 cgagcagcct gcagcgagcg cgcctgcgac cttgcgcgtt ggcgaggcca gtggataatt
     3841 ccagggcgtg aatgcggcaa cgacacccaa gggatgtcgc gtaacaaatt tgcgcagcgc
     3901 accgttggtc ggaacgatcc gtccataaag ccgtcgcgct tcgcccgcat cccagccaat
     3961 cctttcgcat gcggtacgta cctcggagcg cgcctcggca atcgtctttc cctgatcgag
     4021 caccaaggcc tgtgcgattt cctccccccg agcggcaaga ttgtccgccg cgcgaagaat
     4081 gatgcgctcc cgttcggcgg gatccgtccg gcgccagcgc tcaaagcccc ggaccgcggc
     4141 tgcaacggcc gcgtcgagat cgtccccgct cgcatgcggc aagttggcga caaccgtccc
     4201 gtcggccggg ttgatgaccg gttcgccctt tcgatccatg atccaggcgc cgccaatata
     4261 aaggccgagt tcgggataac tcactgggtt gcctccagct atgagcattc ggtgtagaag
     4321 ctggtcactc ctgctgaaag attacagcta atcatagggc tccacgaata atcactttgc
     4381 tccacgccga cggtgacgga tgtgaaggga cgtgcgtcgg atcagctggg atcgaggaaa
     4441 gcgcgacggt gaagcggccg gtttatacct atgagcagat gaggcgattg attgcgcccc
     4501 agtcggtggc gctcgtcggt ctatcacgta aggaaggctc gttcggagcg cgcaccgcga
     4561 tcaatctcaa gcatttcgaa ggccagctct acggggtgaa tcccaatgcc gacgagctgt
     4621 ggggcatccc gtgtcatgca tcgctgcgtt ccttgcccga gcctcccgat tgcgttgtcc
     4681 tggcgatccc tgctgacgca gtgctggcga cggtcgagga agctgcagcc gccggcgttg
     4741 gcggctgcat catcttcgca tccggcttcg ccgagaccgg agtgcccgat caagtcgcga
     4801 tccaggacaa gctcgccgct attgcgcgcg catcgggtat gcggatcgcc ggcccgaact
     4861 gcctgggcct catcaacaac gtgctgcgtg ccggaatgag cttcacgtcc ggctatgccg
     4921 aaccgcctcg tcccggtcct atcgcgatcg tctcccagtc gggcggtctc ggccagtcga
     4981 tcgctcaagt cgggcagcgc ggcggctcat ggagtcacct tctggcggcg ggcaatagct
     5041 gcgacgtcga cgtgtgtgac tatatgagct acctcgcgga tgatcccagc tgttcggtga
     5101 ttgcctgcat tgccgagggc gtggccgatg gcgatcggct gatcgaagct ggcgagcgcg
     5161 cgttggccgc cgacaaaccc atagtcatgt acaagatcgc gaccgggagc gccggcgcca
     5221 aggccgccat gtcgcatacg ggcacgctgg ctgggtcgaa cgcggcctat gacgcggcgt
     5281 acaggcgcct tgcggtcgtg aaggctgaca acattgagga cgtctacgaa acggcgacgt
     5341 tcctcgccaa ggctggccgc ccaaaggcta ggggcgtggc ggccatggct gcatcgggtg
     5401 gcgcttgcgt gatcgcactc gacaaggccg agcagttcgg cgtcgatatg cctttaccgg
     5461 aagccgcgac gcgggcgatt ctcgaatcca atgtcccgag ctttggcaat ccgacaaatc
     5521 cttgcgacat cacggctcag gtcgcaacca acccccaatc ctactcagca tgtgccggcg
     5581 ccctgcttgc cgatccaaat tatggcgcgc tcgtcatcat gacgccaagc gtcatacccg
     5641 atcgcactcc cggcaatgtc gcgatgttcg gcgagctggc ggcggcggcg ggcaagcccg
     5701 tgtgcctgtc ctggatgtcc gaatggaagg agggaccggg tg
//
LOCUS       DASQVK010000039         7023 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_382158,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000039 DASQVK010000000
VERSION     DASQVK010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 7023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7023
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_382158"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1003)
                     /locus_tag="VE567_00905"
     CDS             complement(<1..1003)
                     /locus_tag="VE567_00905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019051513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016793 - triphosphoric monoester
                     hydrolase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase"
                     /protein_id="HYZ47431.1"
                     /translation="MRGLSPWACDPARSRGRLHSEERSALRGPRDEYQRDRDRVIHSI
                     PFRRLRHKTQVFVAPDGDHFRVRLTHSLEVAQIGRTIARALGLNEDLTEALCLAHDIG
                     HPPFGHSGEEALRAATEHAGGFDHNAHTLRVLMRIEKPYPRFDGLNLTWETLEGLAKH
                     NGPVEQPSWAMAEANAAFPLELGAWPSLEAQVAAVADDIAYDNHDIDDGLRAGLLTRE
                     QIQEVPQIARGWREAQARYPEIPERRLLAELVRSQIGLMVNDLIAETRRRLREAGVET
                     VEEVRAAGQALVGFSHPMQAEERTLKRFMYRELYHHQRQLEAAGAATVIVSGLFEAYS
                     "
     gene            complement(1000..2562)
                     /locus_tag="VE567_00910"
     CDS             complement(1000..2562)
                     /locus_tag="VE567_00910"
                     /inference="COORDINATES: protein motif:HMM:NF016895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HYZ47432.1"
                     /translation="MIRLLSRSTVLGLGALLLASGSIVSAQYADRPADRLSRYLRELA
                     ANPASLTALIGAGNAALDVGDGNAALGFFARADERSPRNGPVKAGLARALLMVDNPRE
                     ALKMFDAARSLGVPDIQLAPDRGLAYDLRGENRRAQQDYALALSRGPNDEVTKRYALS
                     LGITGQRDQALSLLEPLLYRRDQGAWRARAFVLALTGDVPGASRIAHQVMPDRMAQSM
                     DAFFARLGGLNSAQKAAAVHLGEMPADKRYGSNAPVPPPPVYAMPTPAPTPMPTADAR
                     ELRRRSSRSHKFDPAPVPTPTPTPPPPGPAQLAATDQAPFYAATPGMSAPVYAPGPSA
                     PLARVAPQQRGDLDAIMRDIRGGKAAPKPAPTRVAQAKLTPPKPTPTPTPKSSAAKKP
                     EPETAKQKDAAKEAPAKPGAKNAKAAAADKKKKPEQPKEPARIWVQVAGGANKGALPK
                     EWAGISGKTRDLKGKGAWTAKNRATNRLLIGPFKSEAEAQTIVTKLRKAGVGAFQWTS
                     EEGEAVEKIGGK"
     gene            complement(2722..4152)
                     /gene="ftsZ"
                     /locus_tag="VE567_00915"
     CDS             complement(2722..4152)
                     /gene="ftsZ"
                     /locus_tag="VE567_00915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004207951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HYZ47433.1"
                     /translation="MSIEFIPPEVDELKPRISVIGVGGAGGNAIANMIGSDVQGVDFI
                     VCNTDAQALNASPADTRIQLGLKITQGLGAGSRPEIGRAAAEETIEQVERAIEGAHMC
                     FIAAGMGGGTGTGAAPVIAKAAREKGILTVGVVTKPFSFEGSRRMKSAEAGIAELQKH
                     VDTLIVIPNQNLFLIANPNTTFKEAFQMADQVLQQGVRGITDLMVMPGLINLDFADVR
                     SVMGEMGKAMMGTGEASGDNRAIEAAEKAIANPLLDGVSMKGAKGVIISITGGEDMRL
                     MEVDEAANHIKELVDPDANIIWGSAFNNDLEGKIRVSVVATGIEAEQSEKPEPARVFS
                     FPTKKAEAEPRPFVMPAAAAKPAEPAPAQLAPEPELKVEAPEVEEEPLTLDAPIETAS
                     DELLLDAPEPEPEPLIDEDVTGRRWFAGNKTEPKPEPAPAVRQGGGTLFERMSSIARG
                     HAKAPTNEDDADPLDIPRFLNRQNNQ"
     gene            complement(4260..5546)
                     /gene="ftsA"
                     /locus_tag="VE567_00920"
     CDS             complement(4260..5546)
                     /gene="ftsA"
                     /locus_tag="VE567_00920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HYZ47434.1"
                     /translation="MSRRESRAAAARGEKLITALDIGSWKVSALIAERDEGGELNVLG
                     TGQRESRGVRRGYVADMAATELAVREAVEQAERIAGVNIEDVWVSFSAGGLVSNIASV
                     EVELGGHRIEQEDIDQLLGAGRESIDPAGRMVLHAQPTLYTLDGLNGVKNPKGLHADK
                     LGVDIHIVAADPSPVRNLDLCVRSAHLEVKSIVASPVATGMTCLSEEEREIGVALVEL
                     GAGVTNVSLFIGGLMVDLRSIPFGAADITDDIASAFGTRRAQAERMKCFYGSATATPR
                     DNHDMIDVAPISAEDGQTELARITRAQLIAIIRQRLEQLFGEISKALTAMGFTGSHAR
                     QVVLTGGGAELKGIADYAQGLLGRSVRVGRPRGLTGLPDAHSGPAFATLAGLTRYAAS
                     DPIDLRALQAARDQTVIRPTGSALIQRLVTAFRTNL"
     gene            complement(5543..6511)
                     /locus_tag="VE567_00925"
     CDS             complement(5543..6511)
                     /locus_tag="VE567_00925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016747718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HYZ47435.1"
                     /translation="MAAARATLKRGSRPAAPARSRKPAARKPGLASRALAALPISHET
                     VQRIVTWSTLGLGAALGLAVLQAFGVPAMAGVAVADALGRAGFEVKRVDLRGIRNMDR
                     LTVYAIAFDQHSMAMPLVDLEGVRAKLLRYGWVQDARVSRRLPDTLVVDIVERKPAAV
                     WQNQGRLRLIDTTGVVLEDVTEAPSADLPLLIGPDANTHAGELTALLATAPSLKPVIA
                     GATWIGERRWDLRFQSGETLALPEGPEESERALTRFARMDASQRLLGRGFLRFDMRDP
                     TRFVARLDRQVRAIDGTASTPTQPAPAPAPAAKEQSPGLEKVNDTI"
     gene            complement(6511..>7023)
                     /locus_tag="VE567_00930"
     CDS             complement(6511..>7023)
                     /locus_tag="VE567_00930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HYZ47436.1"
                     /translation="PVNEGSSVGVAIVTAEGNYGEPIGRDVKGPWQDFEELLAEPFIR
                     GRELTTAVLGGQALGVTELKPKSGFYDYDAKYTEGLTEHVCPANIPPDIAEACGEMAL
                     KAHKVLGCKGASRSDFRWDDEKGVEGLYLLEVNTQPGMTPLSLVPEQARLVGLSYAEL
                     VDAMVKEALG"
BASE COUNT         1055 a         2393 c         2349 g         1226 t
ORIGIN      
        1 ccgaataggc ctcgaacagc ccggagacga tcaccgtggc cgcccccgcc gcttctagct
       61 ggcgctggtg gtggtaaagc tcgcgataca tgaagcgctt cagcgtccgt tcttcggcct
      121 gcatcgggtg gctgaagcca accagcgcct ggcccgcggc gcgcacttct tcgactgtct
      181 ccacacccgc ctcacgaagg cgccggcgag tctcggcaat cagatcgttg accatcagcc
      241 cgatctgcga gcgcaccagt tcggcgagca gccggcgctc gggtatctct ggatagcggg
      301 cctgcgcctc gcgccagccg cgcgcaattt gcggcacttc ctggatctgc tcacgtgtca
      361 atagcccggc ccgaagcccg tcgtcgatgt cgtgattgtc ataggcgatg tcatccgcga
      421 ccgccgcgac ctgggcttcg agcgatggcc aggcgccaag ctccagcgga aaggcggcgt
      481 ttgcctcagc catcgcccag ctcggctgct cgaccggccc gttgtgcttg gcgagccctt
      541 ccaaggtctc ccaggtgagg ttcaatccgt cgaagcgcgg ataaggtttc tcgatccgca
      601 tcagcacgcg cagcgtatgc gcattgtgat cgaagccgcc cgcatgctca gtcgcggcgc
      661 gcagtgcctc ctcacccgaa tggccgaagg gcggatggcc gatatcatgg gccaggcaga
      721 gcgcttcggt caggtcctcg ttcaggccca gcgcgcgtgc gatcgtgcgg ccgatctgcg
      781 cgacttcgag gctatgggtg agccgcacgc ggaaatggtc tccatcgggc gcgacgaaca
      841 cctgggtctt gtgtctgagg cgccggaacg ggatcgagtg gatcacgcgg tcgcggtcgc
      901 gctgatattc gtcgcgcggg ccgcgcaagg cgcttcgttc ctccgaatgc agccgcccgc
      961 ggcttctggc cggatcgcaa gcccaggggc tgagccccct catttgcccc cgatcttttc
     1021 gaccgcttcg ccttcctcac tggtccattg gaacgcgccg acgccggcct tgcggagctt
     1081 tgtgactata gtttgcgctt cggcctcgct cttgaacggg ccgatgagca gccggttggt
     1141 ggcacgattc ttcgcggtcc atgcgccttt gcccttgagg tcgcgcgtct tgccggaaat
     1201 gccggcccat tccttgggca gcgccccctt gttcgcaccg cccgctacct gaacccagat
     1261 gcgcgccggc tccttgggct gctccggttt cttcttcttg tccgcagcgg cggctttcgc
     1321 attcttagca ccaggcttgg cgggcgcttc ctttgctgcg tccttctgct tcgccgtctc
     1381 cggctccggc ttcttggcag cgctcgactt cggcgtgggc gtgggggtcg gtttgggcgg
     1441 ggtcagcttg gcctgtgcaa cgcgcgtcgg ggcgggcttt ggagccgctt tgcccccccg
     1501 aatatcgcgc atgatcgcgt cgagatcgcc ccgttgctgc ggcgcgaccc gagcaagcgg
     1561 agcggatggg ccgggcgcgt agaccggggc cgacatgccg ggcgtggccg catagaaagg
     1621 cgcctggtcg gtcgcggcaa gctgcgccgg gcccggcggt gggggcgtcg gcgtgggggt
     1681 cgggacgggc gccgggtcga acttgtgcga ccgggaggac cggcggcgca actcacgtgc
     1741 gtcagcggtc ggcatgggag tcggcgccgg cgtcggcatc gcatagacgg gcggaggcgg
     1801 cacgggcgca ttcgagccgt agcgcttatc cgccggcatt tcgcccagat gcaccgccgc
     1861 ggccttttgg gccgaattca ggccgcccag ccgcgcgaag aaagcgtcca tcgactgggc
     1921 catgcgatcg ggcatcacct gatgcgcgat ccggctggcg cccgggacat cgccggtcag
     1981 cgccagcacg aaagcccgcg cgcgccaggc gccctggtca cgcctgtaaa gcagcggctc
     2041 caacaggctc agcgcctggt cccgctggcc ggtaatgccc agcgatagcg catagcgctt
     2101 ggtcacttcg tcattggggc cgcggctgag cgccagcgca taatcctgct gcgcgcgccg
     2161 gttttcgcct cgcagatcat aggcaaggcc gcgatcgggg gcgagctgga tgtcgggcac
     2221 acccaaggaa cgcgcggcgt cgaacatctt cagcgcctcg cgcggattgt cgaccatcag
     2281 cagcgcgcgg gcgagcccgg ccttgaccgg gccgttgcgc ggcgaccgct cgtcggcgcg
     2341 ggcgaaaaaa ccgagcgcgg cattgccgtc gcccacgtcc agcgccgcat tgccggcgcc
     2401 gatcaaggcc gtgagactgg ccgggttcgc ggcgagctcc cggagataac gcgacaggcg
     2461 atcggcgggt cggtcggcat attgagcgga cacgatcgag ccggacgcca gcagcagggc
     2521 gcccaggcca aggacagtgg agcgggaaag caatcggatc acgttgcccc catagatgcc
     2581 gcgcgattgt ttagagcaat gtgaacaacg cggtggccac gccagaccgt gcccggacct
     2641 cgacgaacca ccgcagatgc aaaacgcata caaggcccgc gctttccatg gaacgcgcgg
     2701 gccttgagtc cgtgccgtaa cttactgatt attctgccga ttgaggaagc gcggaatgtc
     2761 cagcggatcg gcgtcgtctt cattggtcgg ggccttggcg tggccgcgcg cgatcgacga
     2821 catgcgctcg aacagcgtgc cgccgccctg ccgcactgcc ggtgcaggct ccggcttggg
     2881 ctcggtcttg ttgccggcga accagcggcg gccggtcacg tcctcgtcga tcagcggctc
     2941 gggctccggc tcgggggcgt cgagcagcaa ttcgtcggac gcggtctcga tcggcgcgtc
     3001 aagcgtcagc ggctcttcct ccacctccgg ggcctcgacc ttcagctcgg gctcgggcgc
     3061 cagctgagcc ggcgccggct cagccggctt ggcggcggcg gcgggcatca cgaacgggcg
     3121 cggctcggcc tcggcttttt tcgtcgggaa ggagaagaca cgcgccggct ccggcttttc
     3181 gctctgctcc gcctcgatgc cggtggcgac gaccgagacg cggatcttgc cttccagatc
     3241 gttgttgaag gccgaacccc agatgatgtt cgcatccggg tcgaccagct ccttgatgtg
     3301 attggcggcc tcgtcgactt ccatcaggcg catgtcttcg ccgccggtga tcgagatgat
     3361 cacgcccttg gcgcccttca tgctgacgcc gtcgagcagc gggttggcaa tcgccttttc
     3421 ggccgcctcg atcgcgcgat tgtcgccgga ggcttcgccg gtgcccatca tcgccttgcc
     3481 catctcgccc atcaccgagc ggacgtcggc gaagtcgagg ttgatgaggc caggcatgac
     3541 catcaggtcg gtgatgccgc gcacgccctg ctgcagcact tgatcggcca tctggaacgc
     3601 ttccttgaag gtcgtgttcg ggttggcgat caggaagaga ttctggttgg ggatgacgat
     3661 cagcgtgtcg acatgctttt gcagctcggc aatgccggct tccgccgact tcatccggcg
     3721 cgagccttcg aagctgaacg gcttggtgac gacgccgacg gtcaggatgc ctttctcgcg
     3781 cgccgccttg gcgatcaccg gggctgcgcc ggtgccggtg ccgccgccca tgccggcggc
     3841 gatgaagcac atatgcgcgc cttcgatcgc gcgctcgacc tgctcgatcg tctcttcggc
     3901 cgccgcgcgc ccgatctccg gccgcgagcc ggcgcccagg ccttgggtga tcttcagacc
     3961 gagctgaatg cgcgtgtccg ccggggaagc gttgagcgcc tgcgcgtccg tgttgcagac
     4021 gatgaaatcg acgccctgaa cgtcggagcc gatcatgttc gcgatcgcgt tgccgcccgc
     4081 gccgccgaca ccgatcacac tgatccgggg cttcagttcg tccacttcgg gcgggatgaa
     4141 ttcgatactc atctgcttga ctcctcgtcg ttccatggcg gcgaagcgct ggccccttag
     4201 ggcttatgaa tcagcggaat cgccaaatcg accacaaagt taatttgccc acatgttatt
     4261 cacaggtttg tccggaaggc tgtcaccagc ctttggatga gtgccgagcc ggttggccgg
     4321 atcacggtct ggtcgcgcgc ggcctggagc gcgcgcagat cgatcggatc ggaagcggca
     4381 taacgcgtca gcccggccaa ggtcgcgaag gccggcccgc tatgcgcatc gggcaggccg
     4441 gtcagcccgc gcgggcggcc gacccgcacc gaacggccga gcaggccttg ggcataatcg
     4501 gcaatgccct tgagttcggc cccgccgccg gtgagcacca cctggcgcgc atggctgccc
     4561 gtgaagccca tcgcggtcag cgccttggag atttcgccga acagctgctc cagccgctgg
     4621 cggatgatcg cgatcagctg cgcccgcgtg atccgcgcca gttccgtctg cccgtcctcg
     4681 gcggagatcg gggcgacatc gatcatgtca tgattgtcgc gcggcgttgc cgtcgccgat
     4741 ccgtagaagc atttcatccg ctcggcctgg gcccggcgcg tgccgaacgc ggaggcgatg
     4801 tcgtcggtga tgtccgcagc gccgaacggg atcgagcgca gatcgaccat cagtccgccg
     4861 ataaacagcg agacattggt cacgcccgcg cccagctcga ccagcgcgac gccgatctcg
     4921 cgctcttcct cggacaggca ggtcatgccg gtcgcgaccg gcgaggcaac gatcgacttc
     4981 acctccagat gcgcggagcg gacgcacaga tcgagattgc ggaccggcga ggggtcggcg
     5041 gcgacgatat ggatgtcgac gcccagtttg tccgcgtgca gtcctttggg gttcttcacg
     5101 ccattgagcc cgtcgagcgt gtagagcgtc ggctgcgcgt gcagcaccat ccgccccgcc
     5161 gggtcgatcg attcgcggcc agcgccgagc agctggtcga tatcctcctg ctcgatccgg
     5221 tggccgccga gctcgacttc caccgaggcg atgttactga ccagcccacc cgccgaaaag
     5281 ctgacccaga cgtcctcgat gttcacgccc gcgatccgct cggcctgctc gaccgcctcg
     5341 cgcacggcaa gttcggtcgc ggccatgtcc gccacatagc cgcgccgcac gccgcggctt
     5401 tcgcgctggc cggtgccgag cacgttgagc tcgccgccct cgtcccgctc ggcgatcagc
     5461 gcggagactt tccatgaccc gatgtccagc gccgtgatca gcttctcgcc gcgggccgcg
     5521 gcggctcggg actcgcgcct gctcatatcg tgtcgttcac tttctcaagg ccggggcttt
     5581 gctccttggc ggccggagcc ggggcgggag cgggttgcgt cggggtcgaa gcggtgccgt
     5641 cgatggcgcg cacctggcga tcgagccgcg cgacgaagcg ggtgggatcg cgcatgtcga
     5701 agcgcaggaa accacggccg agcaggcgct gcgatgcatc catccgtgca aagcgcgtga
     5761 gggcgcgttc ggattcctcc ggaccctcgg gcagtgccag cgtctcaccg gactggaaac
     5821 ggagatccca gcgccgctct ccaatccagg tcgcgccagc aatgaccggt ttcagcgacg
     5881 gcgccgtggc gagcagcgcg gtgagctcgc cggcatgggt gttggcgtca gggccgatca
     5941 gcagcggcag gtcggcgctg ggcgcctcgg tcacgtcctc cagcaccacg ccggtggtgt
     6001 cgatcagccg cagccggccc tggttctgcc agaccgcggc gggcttgcgc tcgacgatgt
     6061 cgacgaccag cgtgtcggga agccggcgcg agacgcgcgc gtcctgcacc cagccatagc
     6121 gcagcagctt ggcgcgcacg ccttccagat cgaccagagg catggccatc gaatgctggt
     6181 cgaacgcgat cgcatagacg gtcagccggt ccatgttgcg gatgccgcgc agatcgacgc
     6241 gcttgacctc gaagccggcg cgcccgagcg cgtcggcgac cgcgaccccg gccatcgccg
     6301 gcacgccaaa ggcctgcagc accgccaggc ccagcgccgc gcccagccca agcgtggacc
     6361 aggtgacgat acgctgcacc gtctcatggc tgatcgggag cgccgccagg gcgcggctcg
     6421 ccagccctgg cttccttgcc gccggtttgc gcgaccgcgc cggcgccgcc gggcgcgagc
     6481 cgcgcttcaa agtggcgcgc gccgccgcca tcagccaagc gcctccttca ccatcgcatc
     6541 gaccagctcg gcataggaca ggcccaccag ccgcgcctgt tcggggacga ggctgagcgg
     6601 cgtcatgcca ggctgggtgt tcacttcgag cagataaagg ccttcgacgc ctttctcgtc
     6661 atcccagcga aaatcggagc gcgaggcgcc tttgcagccg agcaccttgt gcgctttcag
     6721 ggccatctcg ccgcacgctt cggctatatc gggcgggatg ttggccgggc agacatgctc
     6781 ggtcagccct tcggtgtatt tggcatcgta atcgtaaaag ccagatttcg gcttcaattc
     6841 agtgacgccc agcgcctgcc cgcctagcac ggcggtggtc agttcgcgcc cgcggatgaa
     6901 cggttcggcg agcagttcct caaaatcctg ccacggccct ttgacgtcgc ggccgatcgg
     6961 ctcgccgtaa ttcccttccg cagtcacgat cgcgacgccg accgacgagc cttcgttcac
     7021 ggg
//
LOCUS       DASQVK010000040         3114 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_445193,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000040 DASQVK010000000
VERSION     DASQVK010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3114
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445193"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1018
                     /locus_tag="VE567_00935"
     CDS             <1..1018
                     /locus_tag="VE567_00935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008070396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase-F iron-sulfur
                     binding region domain-containing protein"
                     /protein_id="HYZ47437.1"
                     /translation="KWNTVRLAEGRRKYIVCNADEGDSGTFADRMLMEGDPFCLIEGM
                     AIAGLAVGAGKGFVYIRSEYPHAIAKMEKAVRLAAPLIAPFEVEIRVGAGAYVCGEET
                     SLLNSLEGKRGEVRAKPPLPAIEGLFGCPTVVNNVLTLAAVPWILANSGQAYADYGTG
                     RSRGTMPVQLAGNVKNGGLFETAFGLTLGELVEEIGGGTASGRPIKAVQVGGPLGAYF
                     PPSLFDTVFDYEAFAARDGLIGHAGIVVFDDTVDMANQARFAFEFCAAESCGKCTPCR
                     LGAVRGRETMERVIAGEDGPANLALVAELCDTMKFGSLCALGGFTPYPVMSAITHFPE
                     DFAR"
     gene            1015..1548
                     /locus_tag="VE567_00940"
     CDS             1015..1548
                     /locus_tag="VE567_00940"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0061603 - molybdenum cofactor
                     guanylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HYZ47438.1"
                     /translation="MRVLGAVLAGGRSSRFGSDKALARYQGMPLIEHAVAGLAPQSDM
                     VVIVGRTNAGMTSVPDWPQPDQGPLGGLAGAFDYAARNGFTLVLTCGVDSVGVPADLR
                     ALLDPAPAYAESQPVLGLWPAEAVGALKELLLGTGKHSMLAFAETIGARPVKLPSEPA
                     NINTPDDLARLEQPHGL"
     gene            1538..>3114
                     /locus_tag="VE567_00945"
     CDS             1538..>3114
                     /locus_tag="VE567_00945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013849532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HYZ47439.1"
                     /translation="MGYEFQPDFGTPASRAVETVTLTIDGRPVTVPAGTTVMRAAAEA
                     GLPIPKLCATDSLKQFGSCRLCLVEIEGARGTPASCTTPVAEGMVVRTDSEQVARLRR
                     GVMELYLTDHPADCSACSQGDCEVRSQAEAVGLSTVRYAPGENHLCEEVDASNPYFDF
                     DPAKCIVCSRCVRACDEIQGAFALTIDGRGFASKVSAGLPSDEFLSSECVSCGACVQA
                     CPTGALQERAVKDIGMPESTTVTTCAYCGVGCTFRAEMKGEQLVRMVPWKDGKANRGH
                     SCVKGRFAWGYANHQERILSPMIRASIDEPWREVSWQEAFEYAASELKRIQDKYGRRS
                     IGGITSSRCTNEETFLVQKLVRAGFGNNNVDTCARVCHSPTGYGLKTTFGTSAGTQDF
                     DSVAQADIVMVIGANPTDGHPVFASRMKQRLRQGAKLIVVDPRRIDLVRTPHVAAAHH
                     LPLRPGTNVAVLTAMAHVVVTEGLSNEEFVRERCDWDEYCEWAAFVSDPKHSPEALAP
                     VTLVDPQELRAAARLYAT"
BASE COUNT          516 a          967 c         1072 g          559 t
ORIGIN      
        1 caagtggaac acggtgcggc tggccgaggg gcggcggaag tatatcgtgt gcaatgccga
       61 cgaaggggac agcggcacct ttgccgaccg gatgctgatg gaaggcgatc ccttctgcct
      121 catcgaaggc atggccatcg cgggcctcgc ggtgggggcg ggtaagggct tcgtctatat
      181 ccgctccgaa tatccccatg ccatcgccaa gatggaaaag gcggtgcggc tggcggcgcc
      241 gctgatcgcg ccgtttgagg tcgagatcag ggtaggggcg ggggcatatg tgtgcggcga
      301 ggagacgtcg ctgctcaatt cgctggaagg aaagcgtggc gaagtgcgcg ccaagccgcc
      361 gctgcccgcg atcgagggcc tgttcggctg cccgaccgtc gtcaacaatg tgctgacgct
      421 cgccgcggtg ccttggatcc ttgcgaatag cgggcaggct tatgcggatt acggcaccgg
      481 ccggtcgcgc ggcaccatgc ctgtccagct cgcaggcaat gtgaagaatg gcggcctctt
      541 cgagaccgcg ttcgggctga cgctcggcga gctggtcgag gagatcggcg gcggcaccgc
      601 atcgggccgg ccgatcaagg ccgttcaggt gggcggaccc ttgggcgcct attttccgcc
      661 aagcctcttc gatactgtct tcgactatga agccttcgcc gcgcgcgatg ggcttatcgg
      721 ccatgccggg atcgtggtgt tcgatgacac cgtcgatatg gcgaaccagg cccgcttcgc
      781 tttcgaattc tgcgcggccg agagctgtgg caagtgcacg ccgtgccgac ttggcgcggt
      841 tcgcgggcgc gaaacgatgg agcgagtcat cgccggtgag gacgggccag ccaatctcgc
      901 gctggtcgca gagctgtgcg atacgatgaa attcggttcg ctctgtgcgc tgggcgggtt
      961 tacgccttat ccggtgatga gcgcgattac gcacttcccg gaggattttg cccggtgaga
     1021 gtgcttggcg cggtgctggc gggcggccgg tcgagccgct tcggctcgga caaggcgctc
     1081 gcgcgttatc aaggcatgcc gctgatcgaa catgcggtgg ccggacttgc gccccagtct
     1141 gatatggtcg tgatcgtcgg ccggacgaat gccggcatga cctcggtgcc ggattggccg
     1201 cagccggacc agggcccgct cggcgggctg gccggagcgt tcgattatgc tgcgaggaac
     1261 gggtttactc tcgtgctgac ctgcggggtg gacagcgttg gcgtcccggc cgacctgcgc
     1321 gcgctgctcg atcccgctcc ggcctatgcc gaaagccagc cggtgctcgg cctctggcct
     1381 gccgaggccg tgggcgcact caaggaactg ctgctcggca ctggcaaaca ttcaatgctg
     1441 gcgtttgccg aaacgatcgg cgcgagaccg gtgaagctgc cgtctgaacc tgctaatatc
     1501 aacacgcccg acgatctggc gcgattggag caaccgcatg ggttatgaat tccagcccga
     1561 ttttggcacc ccggcatccc gcgcggtcga gacggtgacg ctcaccatcg acggtcgtcc
     1621 ggtcaccgtc cccgcgggca cgacggtgat gcgggcggcc gccgaagcgg ggctcccgat
     1681 cccgaagctc tgtgcgaccg atagcctgaa gcaattcggc tcgtgccgac tgtgcctggt
     1741 cgagatcgag ggcgcgcgcg gaacgcccgc ttcctgcacc acgcccgttg ccgaaggcat
     1801 ggtcgtgcgc accgacagcg agcaggtcgc gcggctgcgc cggggcgtga tggagcttta
     1861 cctcaccgat cacccggcgg actgtagcgc ctgttcgcag ggcgactgcg aagtgcgaag
     1921 ccaggccgag gcagtcggcc tttcgaccgt gcgctacgct ccgggtgaaa accatttgtg
     1981 cgaagaagtc gacgcctcca atccctattt cgatttcgac cccgccaagt gcatcgtctg
     2041 ctcgcgctgc gtgcgggcat gcgacgagat acagggcgcg ttcgcactga caatcgacgg
     2101 tcgcggcttt gcgtccaaag tctcggccgg gctgccgtcc gatgagttcc tgagttccga
     2161 atgcgtgtcg tgcggcgcct gcgtccaggc ctgcccgacg ggcgcgctgc aggaacgggc
     2221 ggtcaaggac atcggcatgc ccgagagcac caccgtcacc acctgcgcct attgcggcgt
     2281 gggctgcact ttccgggccg aaatgaaggg cgagcagctc gtccgcatgg tgccttggaa
     2341 ggacggcaag gccaatcgcg ggcatagctg cgtcaagggc cgcttcgcct ggggttatgc
     2401 gaaccaccag gagcggattc tcagccccat gatccgcgcc tcgatcgacg agccgtggcg
     2461 cgaagtgagc tggcaggaag ctttcgaata tgccgcgtcc gagctgaagc gcattcagga
     2521 caaatatggc cggcgttcga tcggcggcat cacttcctcg cgctgcacga acgaagagac
     2581 gttcctggta cagaagctgg tccgtgccgg gttcggcaac aacaatgtcg atacctgcgc
     2641 gcgcgtttgc cactcgccga caggctatgg cctgaagacc acgttcggca cgtccgccgg
     2701 gacgcaggat ttcgattcag tcgcacaggc cgacatcgtc atggtgatcg gcgcaaatcc
     2761 cactgacggc catcccgtgt ttgcgagccg gatgaagcag cggctgcgcc agggcgcgaa
     2821 gctgatcgtc gtcgatccgc ggcgcatcga cctcgtccgc acgccgcatg tggcagcggc
     2881 gcatcacctg ccgctccggc cgggcacaaa tgtcgcggtg ctgactgcga tggcgcatgt
     2941 cgtcgtcacc gaaggcctct ccaacgaaga gttcgttcgt gagcgttgcg actgggacga
     3001 gtattgcgaa tgggcggcgt tcgtttccga cccgaagcac agccctgagg cgctcgcgcc
     3061 ggtgacgttg gtggaccccc aggagctgcg tgcggcggcc cggctctatg cgac
//
LOCUS       DASQVK010000041        11109 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_97611, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000041 DASQVK010000000
VERSION     DASQVK010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 11109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11109
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97611"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..550
                     /locus_tag="VE567_00950"
     CDS             <1..550
                     /locus_tag="VE567_00950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47440.1"
                     /translation="LSGLSWLVFELTNVWSFNADSIPALRAIFAILVISAAGLFLFSR
                     WRLLPAALLLAVFVVTTALSNAVVTVPYLVSAGAVVLLVGWVSRKFGPPLNVRKPPLA
                     DARLSPVPRSHNPEHYSAKQPKCRDLEDGLCCQEPAIRSPNAVDHRRPSPHTFLCRTR
                     RKERDDRPRESRDDGPDNRATY"
     gene            complement(923..1882)
                     /gene="mltG"
                     /locus_tag="VE567_00955"
     CDS             complement(923..1882)
                     /gene="mltG"
                     /locus_tag="VE567_00955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007689020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HYZ47441.1"
                     /translation="MRRLILLGLALLLLAAGAAYYAWSGPGPAPKAVDVVVPEGGTLR
                     SISRELEKSGAVASADRFFLLARLFGGEGLIRAGEYEIPRHASARDILARLYSGKTLQ
                     RFVTVPEGMPSILVYEKLMANPLLTGEIPVPREGAVLPDSYSYQRGEPRAAVLKRMTD
                     AMDKALARLWSQRKSGTVVRSPEEALTLASIVEKETGVPAERRTVAAVYSNRLRIGMP
                     LQADPTVIYPVTKGKPLGRRILQSELHADNGYNTYARSGLPAGPIANPGRASIEAVLD
                     PAPTRALYFVADGKGGHVFAETLAEHNANVAKWYAIRRARGEM"
     gene            complement(1942..3201)
                     /gene="fabF"
                     /locus_tag="VE567_00960"
     CDS             complement(1942..3201)
                     /gene="fabF"
                     /locus_tag="VE567_00960"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010216935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HYZ47442.1"
                     /translation="MRRVVVTGIGLVTPLGSDVETSWANIKASKSGAGTITRFDATDY
                     ACRIACEVKPADHPYGFDPSKRVDHKVQRQVDPFIIYGIDAAGQAIEDAGLTDLPEAE
                     RLRIGCSIGAGIGGLPGIESESLVLHEKGPRRVSPHFVHGRLINLISGQVSIKYGLMG
                     PNHAVVTACSTGAHSIGDAGRMIQLGDADVMLAGGAEGAICPIGIAGFAQARALSTAF
                     NDTPEKASRPYDKDRDGFVMGEGAGVVVLEEYERAKKRGAKIYAELVGYGMSGDAYHV
                     TAPHPEGAGAFRAMQVAMQRSGLDLSDIDYINAHGTSTPLGDELELGAVRRLFGNNIA
                     NLSMSSTKSAIGHLLGGAGAVETIFCILAMRDQIVPPTLNLDNPSEGVEGVDLVPHVA
                     KERKVKAVLNNSFGFGGTNASLVLKAV"
     gene            complement(3324..3560)
                     /locus_tag="VE567_00965"
     CDS             complement(3324..3560)
                     /locus_tag="VE567_00965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003039428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HYZ47443.1"
                     /translation="MSETADRVKKIVVEHLGVEADKVTEDASFIDDLGADSLDIVELV
                     MAFEEEFGVEIPDDAAEKITTVKDAISYIDNNKG"
     gene            3680..4249
                     /locus_tag="VE567_00970"
     CDS             3680..4249
                     /locus_tag="VE567_00970"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HYZ47444.1"
                     /translation="MDMAEAKVRLRTELRARRDALVAGLDSAAQRFAFHAPPTPLKAL
                     IERARCIAGYRPVGSEADPAALLAFAAEAGKTVALPHVERPSVPMRFLAWSPGEPLLP
                     GRHGIEQPDLAAAPEVAPDLFLAPLLGFDRRLHRLGQGAGYYDRAFARYPDAIRVGIA
                     WHVQECDFVPDDPWDVPLHAVLTEREWIA"
     gene            4246..4458
                     /locus_tag="VE567_00975"
     CDS             4246..4458
                     /locus_tag="VE567_00975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017671000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2842 domain-containing protein"
                     /protein_id="HYZ47445.1"
                     /translation="MIDPAQRSVIGIFLVLGLIAAWAVIVASFAAEIGSLWFPAQIAL
                     YVVAGLVWIFPAMPIMRWIVTGRWRR"
     gene            complement(4472..4548)
                     /locus_tag="VE567_00980"
     tRNA            complement(4472..4548)
                     /locus_tag="VE567_00980"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4512..4514),aa:Asp,seq:gtc)
     gene            complement(4598..5788)
                     /locus_tag="VE567_00985"
     CDS             complement(4598..5788)
                     /locus_tag="VE567_00985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017182386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HYZ47446.1"
                     /translation="MRVEQSERVERRLEPAGFERTRKTHEPTLEYQRNRLLAGLTLIA
                     GVGLMIGLPFALRAGSEFFLPVTAALVIAIALVPLLEWLERRRVPPGVAAFLCLFVFL
                     VIANAALASIVVPATEWFQVLPERIPQIQANLAPLIDFYSNLQKFVDDTVQMLASGPV
                     AAARAQAVEAPSSIMDYISSAPHAAIQLFFGILVVYFFLCSWTRLRERTITSRGSFGG
                     ALATARVIQTLVDSTSAYLGTITLINATLGLLVAVGLWLIGMPSPLMWGGIVALLNYV
                     PYIGPILAAILLGLGGLMTFSDVWLALTPAAIQVGLHLVEANAVTPAILGRRLTINPL
                     LILLSLSYWGWVWGTPGALLAVPLLIIIQTVVAAAGKPDIAGFLFEEGTLITGGVERD
                     ADDD"
     gene            5848..7311
                     /gene="glpK"
                     /locus_tag="VE567_00990"
     CDS             5848..7311
                     /gene="glpK"
                     /locus_tag="VE567_00990"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011542236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004370 - glycerol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HYZ47447.1"
                     /translation="MAETILVIDEGTTSTRAMLFALDGRCLGSAQRELTQHYPAPGLV
                     EHDAAEIWDRTLQCAREMVAQAGGAERIAAIGITNQRETVVFWDRMTGEPLSHAIVWQ
                     DRRTAELCAGLKAEGHEPAVQAKTGLLLDPYFSASKIGWALQHWPQLREAGDRLAVGT
                     VESWLVWKLTGGVHVTDATNASRTALMAIGSGGWDDGLLALFGVPREVLPEIVDSAGS
                     FGETRLFGAPIPICGLAGDQQAATIGQACLSPGDTKATYGTGAFVLTATGTTLPTSRH
                     RLLATVAWQLHGQRHYALEGSVFVAGSLIKWLRDDIGLLATASESEAVARTVPDNGGV
                     YLVPALSGLGAPWWRPDARASISGLSFSATRAHIVRAALEAQAHQTHDLKTAFAGEGC
                     DWTRLRIDGGMAANDWLAQDLADMLGITVERPGFVETTAMGAAMLAGVGAGLFASLEE
                     AAALRGDVRVFAPGLPEERRRERLDGWARAVASVLNA"
     gene            complement(7327..7530)
                     /locus_tag="VE567_00995"
     CDS             complement(7327..7530)
                     /locus_tag="VE567_00995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47448.1"
                     /translation="MAKALSRFTIERDGDDYVLHIEDEDGDTLELTATFEQLDLISEA
                     LEEHLAFDAEDPDLLDEEEEEEE"
     gene            complement(7615..10332)
                     /locus_tag="VE567_01000"
     CDS             complement(7615..10332)
                     /locus_tag="VE567_01000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HYZ47449.1"
                     /translation="MSVHGPPGLSDNEELAALYDSAPVGLCVLDRELRFVRINSRLAE
                     MNGVPAADHIGRQLPEILPDIGEQAKLAMQRILAGETLRSLEFEGTTPAHPGAPRSWR
                     GTWVPLKNPQGEVIAASVMVEEVTEGRRARQALRLDEERLRFGLEAGRMVAWEFDLRT
                     GRSRRSANAKLLFGLEPGGGDDIYALVHPDDVDRLKALQARAVAGEAPYEVEVRMRGP
                     DGEMRWGAIRGQVRRDRHGHPVKMAGVIMDITARKEAELAASRAAAEFEALAENVNQL
                     AWMAHPDGSIFWFNRRWYEFTGMAPGEIHRNTAARTLVHPDHVERVRATWSECFARGE
                     RWEDTFPLRGADGGYRWFLTRAEPIRDESGAIVRWFGTNTDVTEQMQTAEALAESEAR
                     FRVMFDTMPALVFVTSPSGEYVDVNEGFRSYTGCTTEELLEERWLAVLHPDDHDRARE
                     IWGGAVRAQTVYIAEHRFRRRDGAFRWHLVRGLPVRDERGEVRSWIGACVDIHERRLA
                     EEELRLRVDEAVAARETALFQLHEAQKLETIGQLTGGVAHDFNNLLTPIVGSLDLLRR
                     RIEDDRSARLIEGALAAAERARTLIHRLLAFARRQTLQPRAVDPEALVEGMRDLIERS
                     LGPRIEFVTEVEPDLPPALVDPNQLELALLNLSVNSRDAMPGGGMLTWHLCEEDAPAS
                     LPELRPGRYLRMTISDTGMGMSQETLARAVEPFFSTKAAGKGTGLGLSMVHGLAAQSG
                     GAFRLESRPGEGTKATLWLPVAGESVPVASREPETRTAARRAVILLVEDDDRVRYTTA
                     ESLSELGYEVQSAISAETALDQVARGLRPDLLVTDHLMPGMTGAQLAQEVRRQLPGLP
                     VLMITGYAQLRPEETGGLDVLVKPYRHAELALRVAQLLAGEAALENSVG"
     gene            10507..>11109
                     /locus_tag="VE567_01005"
     CDS             10507..>11109
                     /locus_tag="VE567_01005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014078060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HYZ47450.1"
                     /translation="MTAVGQDTLATRSKLQVGGKSYAYYAIDKAAAKVGDVSRLPFSM
                     KVLLENLLRFEDGTTVTVEDIQALADWQKEQRINREIQYRPARVLMQDFTGVPCVVDL
                     AAMRDAMNKLGGDAQKINPLVPVDLVIDHSVMVDEFGNPKAFEANVDLEYQRNMERYE
                     FLKWGSKALNNFRVVPPGTGICHQVNLEYLARAIWSSDDAK"
BASE COUNT         1903 a         3693 c         3641 g         1872 t
ORIGIN      
        1 gctgagcggt cttagctggc ttgtattcga gctgactaac gtctggtcct tcaacgcgga
       61 cagcatacca gccttgcgag caatctttgc tattctcgta atctcagcgg caggtttgtt
      121 tctctttagt cgctggcgct tgcttcccgc cgcgctactg ctcgctgtat ttgtcgtcac
      181 cactgccctg tcaaacgcag tggttacagt tccttacctt gtttcggcag gtgccgtcgt
      241 gctgttggtg ggatgggtaa gccgcaagtt cggaccgccg ctgaatgtcc gcaaaccacc
      301 cttagcggac gcccgattgt ctcctgttcc ccgcagccac aatccagaac actactccgc
      361 caagcagccc aaatgccgcg atctggagga cggattgtgc tgccaagagc cagccatacg
      421 tagtccgaac gccgtcgatc accgtcgccc ttccccccac actttcctgt gtcgcaccag
      481 aaggaaggag cgagatgatc gcccacggga gagccgcgac gatggccccg acaacagagc
      541 aacttattag gcttgctgtg aagtgtcgcc ggagcagaaa gtaggccggc atacccagca
      601 ccagcgtcgc ggggtatgcc ccaacaacgg cgtataacag cgccgtcctc catagtcgct
      661 cggctaaact cggaagcccg tcataggcag gcgaccagca ggccatggca aacgccgccg
      721 cagtaggtgc cagaaaaaga gcgagagcta cgcgccaaat gggcggatag acctgttcgg
      781 gccagggctg atacatatcc agactgtaac agttgaacgt cggcaatcca cccttcccgg
      841 gcattgccgg tgtggtcaca ttcgctctaa gccggacata tcactatacc ccccgggtca
      901 agtccggggt gacgctgacg cgtcacattt cgccgcgggc gcggcggatg gcgtaccatt
      961 tggcgacgtt cgcgttgtgc tcggccaaag tctcggcgaa gacgtgaccg cctttgccgt
     1021 ccgccacgaa gtagagcgcc cgcgtcggcg cggggtctag cacggcctcg atcgacgcgc
     1081 ggccgggatt ggcgatcgga ccggcgggga ggccggatcg cgcataggtg ttgtagccat
     1141 tgtccgcgtg cagctccgac tggaggatgc ggcggccaag cggcttgccc ttggtgaccg
     1201 ggtagatgac ggtgggatcg gcctggagcg gcatgccgat ccggagccgg ttcgaataga
     1261 cggcagcgac cgtgcggcgc tcggccggca cgcccgtttc cttctcgacg atcgaggcga
     1321 gcgtcagcgc ttcttccggg ctgcggacaa cggtgccgga ttttcgctgc gaccagaggc
     1381 gggccaacgc cttgtccatc gcgtccgtca tccgtttcag caccgcggcg cgaggctcgc
     1441 cgcgttgata gctatagctg tccggcagca ccgcgccttc gcgcgggacg gggatttcgc
     1501 cggtgagcag cgggttcgcc atcaatttct catagacgag gatcgagggc atgccttcgg
     1561 ggacggttac gaaacgctgg agcgttttgc ccgaatagag ccgggcgaga atgtcccgcg
     1621 cgctggcgtg gcgcgggatt tcatattcgc cggcgcggat caggccttcg ccgccgaaca
     1681 gccgcgcgag caggaagaag cggtccgccg acgcgactgc tcccgatttt tccagctcgc
     1741 gcgagatgct gcgcagcgtg ccgccttcgg gcacgaccac gtccacggct ttcggcgccg
     1801 ggccgggccc gctccaggca taataagccg cgcccgcggc gagcagcagc aaggcgaggc
     1861 caagcaggat caggcggcgc attttcccaa tctcctggcc tgggagcgtt ccggcttcga
     1921 caagctaaac gggcccgtgc ctcaaaccgc cttcagcacc aggctggcat tggtgccgcc
     1981 gaagccgaag ctgttgttga gcacggcctt gaccttgcgc tccttggcga cgtgcggaac
     2041 gaggtcgact ccctccacgc cctcgcttgg attgtcgaga ttcagcgtgg gcgggacgat
     2101 ctggtcgcgc atcgcgagga tgcagaagat cgtctctacc gcgcccgcac cgccgagcag
     2161 atggccgatc gccgatttgg tcgaactcat cgagaggttc gcgatgttat tgccgaacag
     2221 gcggcggacc gcgcccagct ccagctcgtc gccaagcggc gtcgaagtgc cgtgcgcgtt
     2281 gatatagtcg atgtccgaca ggtcgaggcc ggaacgctgc atcgcgacct gcatcgcccg
     2341 gaaggcgccg gcgccttcgg gatgcggggc ggtgacgtga taggcgtcgc ccgacatgcc
     2401 gtagccgacc agctcggcat agattttggc gccgcgcttc ttcgcccgct catattcctc
     2461 cagcacgacc acgcccgcgc cttcgcccat gacgaagccg tcgcgatcct tgtcataggg
     2521 gcgcgaggct ttttcgggcg tgtcgttgaa ggcggtggaa agcgcacggg cctgggcgaa
     2581 gccggcaatg ccgatcgggc agatcgcgcc ttccgcgccg cccgccagca tcacgtcggc
     2641 gtcgccgagc tggatcatgc ggccggcatc gccgatcgag tgcgcgccgg tcgagcaggc
     2701 agtcaccacc gcgtggttcg gccccatcag cccatatttg atcgagacct ggcccgagat
     2761 gaggttgatc agccggccgt ggacgaaatg cggcgagacg cggcgcgggc ccttttcgtg
     2821 cagcaccagc gactcggact cgataccggg caggccgccg atgcccgcgc cgatcgaaca
     2881 gccgatgcgc agccgctccg cttccggcag atcggtgagg ccggcatcct cgatcgcctg
     2941 gccggcggcg tcgataccgt agatgatgaa tggatcgacc tggcgctgga ccttgtgatc
     3001 gacccgcttg gaaggatcga aaccataggg atgatcggca ggcttcacct cgcaggcgat
     3061 gcggcaggca taatcggtcg cgtcgaagcg cgtgatcgtg cccgcgcccg atttggacgc
     3121 cttgatgttg gcccagctgg tctcgacatc gctgccgagc ggggtgacga ggccgattcc
     3181 ggtgacgacg acacgacgca tgcgtttctc caagatcctg gggcgcgtac ccctaatgcg
     3241 aaacggctcc cctgcccgta aatgggccgg agagccgtcc gttcaacgcg gcttgtccgc
     3301 ggcggagcga cccgccggca gaatcagccc ttgttgttgt cgatatagct gatcgcgtcc
     3361 ttgacggtcg tgatcttctc ggcggcatcg tccgggattt cgaccccgaa ttcttcctcg
     3421 aaggccatca cgagttccac gatatcgagg ctgtccgccc ccagatcgtc gatgaagctg
     3481 gcgtcctcgg tgaccttgtc cgcttcgacg ccgagatgtt cgacaacgat cttcttcacc
     3541 cggtcggcag tctcgctcat ggagtatcct ttggttagcg ctttgcagcg cacctaatcc
     3601 gctgcctgaa cgctggcaag ccccgcgcgg gcgcgagtct cgctaggcag gggcgacgcc
     3661 gtctcttaag gcgtactgaa tggacatggc cgaagccaag gtgcggctgc gcaccgagtt
     3721 gcgcgcaaga cgggatgcgc tggtcgccgg gctcgactcg gctgcgcagc ggttcgcctt
     3781 ccacgcgccg ccgacgccgc tcaaggcgct gatcgagcgt gcgcgctgca tcgccggcta
     3841 ccggccggtc ggcagcgaag ccgatcccgc cgccctgctc gccttcgccg ccgaggcggg
     3901 gaagacggtc gcgctgcctc atgtcgagcg gccgagcgtg ccgatgcgtt ttcttgcgtg
     3961 gagcccgggc gagccgctgc tgccggggcg ccatggaatc gagcagccgg atctggcggc
     4021 ggcgcccgaa gtcgcgcccg acctgttcct cgcgccgctg ctcggcttcg accggcgact
     4081 gcaccggctg ggccagggcg ctggctatta cgaccgcgcc tttgcccgct atcccgacgc
     4141 gattcgagtc ggcattgcct ggcatgtgca ggaatgcgat ttcgtgccgg acgatccgtg
     4201 ggacgtgccg ctgcacgccg tgctcaccga acgggagtgg atcgcgtgat cgacccggcg
     4261 cagcggagcg tgatcgggat tttcctggtg ctgggcctga tcgcggcctg ggcggtgatc
     4321 gtcgcgagct ttgcggcgga gatcggcagc ctctggtttc cggcgcagat cgcgctctac
     4381 gtcgtagcgg gcctggtgtg gatcttcccc gccatgccga tcatgcgctg gatcgtgacc
     4441 gggcgctggc ggcgctgaca tctgccggaa atggcgcgag tgacggggct cgaacccgcg
     4501 acctccggcg tgacaggccg gcgctctaac cgactgagct acacccgcgc ttcggttgag
     4561 gcgggccggt taagggagtg gtctcacgct gtcaacgcta atcgtcgtcg gcgtcccgct
     4621 cgacgccgcc cgttatgagc gtgccttcct caaagaggaa accggcgatg tcgggcttgc
     4681 ctgccgcggc gacgacggtc tggatgatta tcagcaacgg caccgcgagc agcgcgcccg
     4741 gcgtgcccca gacccagccc caatagctca gcgacaacag gatcagcagc gggttgatcg
     4801 tcagccggcg gccgaggatc gcgggcgtga cggcattggc ctcgaccagg tgcaggccga
     4861 cctggatcgc ggccggcgtg agcgcgagcc agacgtccga aaaggtcatc agcccgccga
     4921 gccccagcag gatcgcggcg aggattgggc cgatataggg gacgtaattc aacagcgcga
     4981 cgataccgcc ccacatcaag ggcgacggca tcccgatcag ccacagcccg accgcgacca
     5041 gcaaccccaa agtcgcgttg atgagcgtga tcgtgcccag ataggccgaa gtcgaatcga
     5101 ccagcgtctg gatcacgcgc gccgtggcga gagcgccgcc gaagctgccg cggctggtga
     5161 tcgtgcgctc gcgcagacgc gtccagctgc acaggaagaa atagacgacg aggatgccga
     5221 aaaagagctg gatcgccgcg tgcggcgcgg acgagatata gtccatgatc gagctcggcg
     5281 cttcgacggc ctgggcgcgg gcagccgcaa ccggcccgct cgccagcatc tgcacggtgt
     5341 cgtcgacgaa tttctgcagg ttcgaataga agtcgatcag cggtgcgagg ttcgcctgga
     5401 tttggggaat gcgctcgggc agcacctgga accattcggt cgccgggacg acgatcgagg
     5461 ccaaagccgc attcgcgatc accagaaaca cgaacagaca cagaaaggcg gcaacgccgg
     5521 gcggcacgcg ccgccgctca agccattcga gcagcgggac cagcgcgatc gcgatcacga
     5581 gggccgcggt taccggcagg aagaattccg acccggcccg caacgcgaag ggaaggccga
     5641 tcatcaggcc gacgcccgca atcagcgtca agccggccag gagccggttg cgctgatatt
     5701 cgagcgttgg ctcatgcgtc ttgcgcgtgc gctcgaaccc ggccggctca agccgccgct
     5761 ccactcgctc ggattgttcg acgcgcatgg cggcactatg cgcgatgatc gaagccgccg
     5821 ccagatgcgg gagtatcggg gagacgaatg gccgaaacaa ttctcgtcat agacgaaggc
     5881 accacgtcca cgcgcgcaat gctgttcgca ctcgacgggc gctgcctggg cagcgcccag
     5941 cgcgagctga cccagcatta tccggcgccg gggctggtcg agcatgacgc ggcggaaatc
     6001 tgggaccgca cgctgcaatg cgcgcgcgag atggtcgcac aggcaggcgg tgccgaacgg
     6061 atcgccgcga tcggcatcac caaccagcgc gagacggtgg tcttctggga caggatgacc
     6121 ggagaaccgc tgtcgcatgc aatcgtctgg caggaccggc gcaccgccga actctgcgcc
     6181 gggctgaaag ccgagggtca tgagccggcg gtgcaggcga agaccgggct gctgctcgac
     6241 ccctatttct ccgcgtccaa gatcggctgg gcgctgcagc attggccgca actgagggaa
     6301 gccggcgacc ggctcgcggt cggcaccgtc gaatcctggc tcgtgtggaa gctgaccggc
     6361 ggcgtccatg ttaccgacgc gaccaacgcc tcgcgcaccg cgctgatggc gatcggcagc
     6421 ggcggctggg acgatgggct gctcgccttg ttcggggtgc cgcgcgaggt gctgcccgag
     6481 atcgtggaca gcgccggcag cttcggcgag acgcgactgt tcggcgcgcc catcccgatc
     6541 tgcggcctgg cgggcgatca gcaagcggcg acgatcggcc aggcctgtct ttcgcccggc
     6601 gacaccaagg ccacctacgg caccggtgca ttcgtgctga ccgcgacggg caccactctg
     6661 cccacttcgc gccaccggct gctcgccaca gtggcctggc agcttcacgg ccagcggcat
     6721 tatgcgctgg aaggcagcgt tttcgttgcc gggagcctca tcaaatggct gcgcgacgat
     6781 atcggcctgc tcgcgacggc aagcgaaagc gaggccgtgg cgcgcaccgt cccggacaat
     6841 gggggggtct atctggtgcc ggccctgtcg ggcctcggcg cgccctggtg gcggcccgat
     6901 gcgcgggcgt ccatctcggg cctgagcttc tctgcgaccc gcgcgcacat cgtccgcgcc
     6961 gcgctcgaag cccaggcgca ccagacgcac gacctcaaga ccgccttcgc cggggaaggc
     7021 tgcgactgga cccggctccg catcgacggc gggatggccg cgaacgactg gctcgcccag
     7081 gacctggccg acatgctggg aatcacggtc gagcggcccg gcttcgtcga gaccaccgcg
     7141 atgggcgcgg cgatgctggc cggcgtgggc gccgggctgt tcgcgtcgct ggaggaagcg
     7201 gcggcactgc gcggggacgt gcgggtgttc gcgccgggat tgccggagga acggcgccgc
     7261 gaacggctcg acggctgggc gcgcgcggtg gcttccgtgc tgaacgctta gcccccagca
     7321 ggcaggctat tcctcttctt cctcttcctc atccaacaag tccgggtcct cggcgtcgaa
     7381 cgcaagatgc tcttcaagcg cttcgctgat caggtcgagc tgctcgaacg tcgcggtaag
     7441 ctcaagcgta tccccgtcct catcctcgat atggagcaca tagtcgtcgc cgtcgcgttc
     7501 gatcgtgaac cgtgaaagcg ccttggccat gcctgtcttc ctcctcgtgc gcgcctcaca
     7561 acgcacatgg agcgcactgg gtgcatggaa atttgcgaga cggtgcggac cgcttcagcc
     7621 gaccgaattc tccagtgcgg cttcgccggc caagagctgg gcaacgcgca gggccagctc
     7681 ggcgtggcga tagggtttga ccaggacatc gagcccgccg gtctcttccg gccgaagctg
     7741 ggcatagccg gtgatcatca acaccggcag gccgggaagc tggcgcctca cttcctgcgc
     7801 caattgcgcc cccgtcatgc cgggcatcag atgatcggtg acgagcaggt cgggcctcaa
     7861 gccccgcgcg acctggtcga gcgcggtttc ggccgaaatg gcgctctgca cctcatagcc
     7921 gagttcgctc aggctttccg cggtggtgta gcgtacgcga tcatcgtctt cgacgagcag
     7981 aataaccgcg cgccgcgccg cagtccgcgt ctccggttcg cgcgaagcga ccgggacgga
     8041 ctctccagcc accgggagcc agagagtcgc tttggtcccc tcccccggcc ggctctccag
     8101 gcgaaaggcg ccgcccgatt gcgccgccag gccgtgcacc atggagaggc cgaggcccgt
     8161 ccctttgccg gcagccttgg tcgagaaaaa gggttcgacc gcccgcgcca gcgtttcctg
     8221 actcatgccc ataccggtgt cgctgatcgt catccgcagg tagcggccgg gcctgagctc
     8281 cggcagagag gccggcgcgt cttcttcgca caagtgccac gtcagcatgc cgccgccggg
     8341 catcgcatcg cgcgaattga ccgacaggtt cagcagcgcg agttcaagct ggttgggatc
     8401 gaccagcgct ggcggcaggt ccggctcaac ttcggtcacg aactcgatcc gcgggccgag
     8461 cgagcgctcg atcagatcgc gcatgccttc caccagcgct tcgggatcga ccgcgcgcgg
     8521 ctgcagcgtc tggcgacgag cgaacgccaa cagccggtgg atgagcgtgc gcgcccgctc
     8581 cgccgcggcc agcgcaccct cgatcagccg cgcggagcgg tcatcctcga tacggcggcg
     8641 cagcaaatcg aggctgccga cgatgggcgt cagcaaattg ttgaagtcgt gcgcgacgcc
     8701 gccggtcagt tgcccgatgg tttccagctt ctgtgcctcg tgcagctgga acaaggcggt
     8761 ctcacgcgcg gcgaccgctt catcgacgcg cagccgcagc tcctcctcgg caaggcgccg
     8821 ctcatgaatg tcgacgcaag cgccgatcca gcttcggacc tcgcctcttt cgtcacgaac
     8881 cggcaggccg cgaaccagat gccagcgaaa ggcgccatcg cgtcggcgga agcggtgttc
     8941 ggctatataa acggtttgcg cacggaccgc tccgccccag atctcgcgcg cccgatcatg
     9001 gtcgtcggga tgaagcactg caagccagcg ctcttcgagc aactcctccg tggtgcagcc
     9061 ggtatagctt cggaagcctt cgttgacgtc gacatattcg ccgctcgggc tggtaacgaa
     9121 cacgagcgcg ggcatggtat cgaacatgac gcgaaaccgc gcttccgact cggcaagcgc
     9181 ttctgccgtc tgcatctgct ccgtcacgtc ggtgttggtg ccgaaccagc ggacgatcgc
     9241 tccgctttcg tcccggatcg gctcggcgcg cgtaagaaac cagcgatagc cgccatcggc
     9301 gccgcgaagc gggaacgtat cttcccaccg ctcaccgcgc gcgaagcact cgctccatgt
     9361 cgccctcact cgctcaacat ggtccggatg caccagagta cgggcggcgg tgttgcggtg
     9421 aatttctccg ggggccatgc cggtgaactc gtaccagcgg cggttgaacc agaagatgga
     9481 gccgtccgga tgcgccatcc acgcgagctg attgacattt tcggccagcg cctcgaactc
     9541 cgcagcggcc cgcgaggccg ccagttcggc ctccttgcgt gcggtgatgt ccatgatcac
     9601 gcccgccatc ttgacgggat ggccatgccg atcgcgccgc acctgcccgc gaatcgcgcc
     9661 ccatcgcatc tcgccatccg gcccccgcat ccgaacctcg acctcgtacg gagcctcgcc
     9721 ggcgacagcg cgagcctgaa gggccttgag ccggtcgaca tcgtccggat ggacgagggc
     9781 atagatgtcg tcgcccccgc cgggttcgag gccgaacagc agcttcgcat tggcggagcg
     9841 gcggctgcgc cccgtgcgca gatcgaattc ccaggcgacc atccgtccgg cctccagccc
     9901 gaagcgcagc cgctcctcgt cgagccgcag cgcctgccgc gcgcggcggc cttcggtcac
     9961 ctcttcgacc atcacgctcg cggcaatcac ttcgccttgg gggtttttga gtggaaccca
    10021 ggtgccgcgc cagctgcgcg gtgcgccggg atgcgccggc gtggtgcctt cgaactcgag
    10081 gcttcgcagg gtttcaccgg ccaggatgcg ctgcatcgcc agcttcgcct gttcgccgat
    10141 atcgggcagg atttcgggga gctggcgacc gatatggtcg gccgccggaa cgccattcat
    10201 ttcggccagg cggctgttga tccgcacgaa gcgcagctca cggtccagca cgcagaggcc
    10261 taccggcgca ctgtcgtaca gcgccgccag ctcctcattg tcggaaaggc cgggcgggcc
    10321 gtgcaccgac atatgctaac ccctgccaac gcggacgaca ggcccacgag cggagagtct
    10381 atctgcacgc cgcgcggaag tccaacacac ccgccctttt cgctggccca ccctcttgct
    10441 agagccaccg cgcacgagtc tggctcgcgt tccgagccgc ccaccaaata gaacaaggga
    10501 aaccctatga ccgccgtcgg acaggatacg ctcgccaccc gctcgaagct gcaagtgggc
    10561 ggcaaaagct atgcctatta tgcgatcgac aaggcggcgg cgaaggtcgg cgacgtttcc
    10621 cgcctgccct tctcgatgaa agtgctgctc gaaaacctgc tgcgcttcga agatggcacg
    10681 accgtcacgg tcgaggatat ccaggcgctt gccgattggc agaaggagca gcggatcaac
    10741 cgtgagatcc agtatcgccc ggcgcgcgtg ctgatgcagg actttaccgg cgtgccctgc
    10801 gtggtcgatc tcgccgcgat gcgcgacgcg atgaacaagc tcggcgggga cgcgcagaag
    10861 atcaatccgc tggttccggt cgatctggtc atcgaccact cggtaatggt cgacgagttc
    10921 ggcaacccca aagcgttcga ggcgaacgtc gacctcgaat atcagcgcaa catggagcgc
    10981 tatgagttcc tcaaatgggg atcgaaggcg ctcaataatt tccgtgtggt gccgcccggc
    11041 accggcatct gccaccaggt gaacctggaa tatctcgccc gcgcaatctg gtcttccgac
    11101 gacgccaaa
//
LOCUS       DASQVK010000042         3179 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_160635,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000042 DASQVK010000000
VERSION     DASQVK010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3179
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160635"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..468
                     /locus_tag="VE567_01010"
     CDS             <1..468
                     /locus_tag="VE567_01010"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HYZ47451.1"
                     /translation="WISPDDYPAEALKAGQEGNVRVTLDIGPDGAPRACRIDESSGVA
                     VLDEGSCAVLMARARFQPPKSRDGKPTEANFTRNIRWVIPGTAEPDWVWVKLAAVGER
                     FACSAEVGGKVRKLTDRVCQALGESVKKSGGSLDAPAFALLPDDPRFLKPAEQ"
     gene            complement(615..2480)
                     /locus_tag="VE567_01015"
     CDS             complement(615..2480)
                     /locus_tag="VE567_01015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HYZ47452.1"
                     /translation="MLNLTDITVRLGGRTIIDAATAKLPPRGRIGLIGRNGAGKTTLV
                     RTITGFIEPDAGSIDMPRGARLGYIAQEAPAGDATPFETVLAADTERTALMAESESCH
                     DPDRLGDIYERLIAIDAYTAPSRAAQILVGLGFDEEAQHRPLDSFSGGWKMRVALASL
                     LFSQPDLLLLDEPSNHLDLEAVLWLEDFLKSYPATILLVSHERDFLNNVVDHILHLGN
                     GKLTLYPGGYDAFERQRAERQAQIASARAKQQAEREKLQDYVARNSARASTAKQAQSR
                     AKMLAKMQPIAEMIDDPSLTFDFPDPDALRPPLITLDMATVGYGETPILKRLNMRFDP
                     EDRIALLGRNGNGKTTLARLLAAQLTPMEGGMSASGRMRVGYFTQYQVEELDRDETPL
                     QHMTQMMKGASQSAVRAQLGRFGFQGQKATTQVGKLSGGERARLALALITRDAPHMLI
                     LDEPTNHLDVDAREALIQALNAYTGAVVIVSHDRHMIEMTADRLVLVDGGTAREFDGS
                     VDDYIAFVLSKDGAGAKPPKAEKKEARRAAAEAREREKELRQVAKAAEAELARLSEQR
                     SAVDRALSDPSAAELRLARLSMTELMKRRAELDAEVATAETAWLEANEALEAIAA"
     gene            complement(2882..3076)
                     /locus_tag="VE567_01020"
     CDS             complement(2882..3076)
                     /locus_tag="VE567_01020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47453.1"
                     /translation="MDQRDGGTNARSLKDTIAGTGPGIPDDSLAPGEESLPEPPSDED
                     VKRTAEKLGAPDEQFAPEGK"
BASE COUNT          486 a         1056 c         1065 g          572 t
ORIGIN      
        1 tggatatcgc cggacgatta tccggcagag gcgctcaagg cgggacagga ggggaatgtc
       61 cgggtgacgc tcgatattgg ccccgatggc gccccccgcg cctgtcgtat cgacgagagc
      121 agtggggtgg ccgttctgga cgagggaagc tgcgccgtcc tcatggcgcg tgccaggttt
      181 cagccgccga aaagccgtga cggcaagcca accgaggcaa atttcacgcg taacatccgc
      241 tgggtcattc ccggtactgc cgagccggac tgggtctggg taaagctcgc agccgtcggc
      301 gaacgcttcg cgtgctcagc ggaagtcgga ggtaaagtgc gcaagctgac cgatcgggtc
      361 tgccaggcgc tcggcgagtc agtgaaaaag tccggagggt cattggatgc gccggccttt
      421 gccctgctgc cggacgatcc gcggtttctg aaacccgcag agcaatagaa agcgccttaa
      481 ggacgtagag cggggcctcg caccgcgcct gcagtccggc aaactgctcg cgggagccgg
      541 gacgcagccg gcagccaagt tcaggccaag gccggcttga tgccggcggg gagcatggct
      601 ttcagctgtg aatcctaagc cgcgatcgct tccagcgctt cattggcctc gagccaggcc
      661 gtttctgccg tcgcgacttc cgcgtcgagt tcggcccggc gtttcatcag ctcggtcatc
      721 gacagcctgg caagccgcag ctcggcggcc gagggatcgg acagtgcgcg atcgactgcg
      781 cttcgctgct cggagagtcg ggccaattcg gcttccgcgg ccttggcgac ttgccgcagt
      841 tccttttccc gttcgcgcgc ctcggcggcc gctcggcgcg cttccttctt ctcggccttg
      901 ggcggcttgg cgcccgcgcc gtccttgctg agcacgaacg cgatataatc gtccaccgac
      961 ccgtcgaact cccgggcggt gccgccgtcg accagcacca gccggtcggc ggtcatctcg
     1021 atcatgtgcc ggtcgtggct cacgatcacc acggcgccgg tataggcgtt gagcgcctgg
     1081 atcagcgcct cgcgtgcatc gacgtcgagg tggttggtgg gctcgtcgag gatcagcatg
     1141 tgcggcgcgt cgcgcgtgat cagcgccagc gccaatcggg cacgctcgcc gcccgaaagc
     1201 ttgccgacct gcgtcgtcgc cttctgcccc tgaaagccga agcgccccag ctgcgcccgc
     1261 acggcggact ggctcgcgcc cttcatcatc tgcgtcatgt gctggagcgg cgtttcgtcg
     1321 cggtcgagct cctcgacctg atactgggtg aaatagccca cccgcatccg gccgcttgcg
     1381 ctcatgccgc cttccatcgg cgtaagctgc gccgccagca ggcgcgccag cgtcgtcttg
     1441 ccgttcccgt tgcgccccag cagcgcgata cgatcctccg gatcgaaccg catgttgagc
     1501 cgcttgagga tcggcgtctc gccatagccc actgtcgcca tgtcgagcgt gatcagcggc
     1561 ggccgcagcg cgtcgggatc ggggaagtcg aaagtcaggc tgggatcgtc gatcatctcg
     1621 gcgatcggct gcatcttggc cagcatcttg gcgcgcgact gggcctgttt ggcggtggac
     1681 gcccgggcgg agttgcgcgc gacatagtcc tgcagctttt cgcgctcggc ctgctgcttc
     1741 gcgcgggcgg acgcgatctg cgcctgccgc tcggcacgct gccgctcgaa cgcgtcatag
     1801 ccgcccgggt agagggtcag cttgccgttc cccagatgca ggatgtggtc cacgacattg
     1861 ttgaggaagt cacgttcgtg gctgacgagc aggatcgtcg ctggatagct cttcaggaaa
     1921 tcctccagcc acagcacagc ctcgaggtcg aggtggttgg aaggctcgtc gagcaggaga
     1981 aggtcgggtt gggagaaaag caggctggcg agcgccacgc gcatcttcca gccgcccgaa
     2041 aagctgtcga gcggccggtg ctgcgcctcc tcgtcgaagc ccagcccgac caggatctgc
     2101 gcggcgcgcg agggcgcggt ataggcgtcg atcgcgatca gccgctcata aatgtccccc
     2161 agccggtcgg ggtcgtggca gctttcgctt tcggccatca gcgccgtgcg ctcggtatcg
     2221 gcggccagca cggtctcgaa cggcgtcgcg tcgcccgccg gcgcctcctg cgcgatatag
     2281 cccagcctcg cgccgcgcgg catgtcgatc gagccggcgt ccggctcgat gaaaccggta
     2341 atggtgcgca ccagcgtcgt cttgcccgcc ccgttgcgtc cgatcagccc gatccggccg
     2401 cgcggcggca gcttcgcggt cgcagcgtcg atgatcgtgc gcccaccgag gcgcacggtg
     2461 atgtcggtca gattgagcat ggccgcgcgc ccgtagcaga agaaggagcg ctccccaagc
     2521 atccgccgct tcggcgggcc gcaaacaagc gctgtcctac acccccgtcc gcccgctagc
     2581 ctggcgcagg cccgagtctg cactcggggg cgcggctctt tgatcctgtt catgatgtcg
     2641 ccgcttgcgc gccgtcgcgg gcagtgcgcc tgcgcgcccg acgatcgcga tgtggagtga
     2701 ggggcggccg aaatggggcc gatttaatcc tggaatccga aagacttgca gccggcaacc
     2761 acaatcaagt tttaacttga gcgcgcaact ctggcttcag ccacaaaaat cgcgcttaag
     2821 ttcacgaaaa tggcggctca ccctaagaac tttgtgaact taaggagggc gccgaagggc
     2881 cctatttccc ctccggcgcg aactgctcgt ccggcgcgcc gagcttttcg gccgtgcgct
     2941 tcacgtcttc gtcgctcggc ggctcgggca aggactcctc accgggcgcg agactgtcgt
     3001 cgggaatgcc ggggccggtg ccggcgatcg tgtccttgag cgagcgcgcg ttcgtgccgc
     3061 catccctctg gtccatggcc tctctccttc gcgcatcagg cgcgtcggcg gagtcaacgc
     3121 ctctggaggc gaggcgttgc cctcggctgg agcgtgttca ggcctggctg gccgagcag
//
LOCUS       DASQVK010000043         2128 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_160707,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000043 DASQVK010000000
VERSION     DASQVK010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2128
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160707"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1190)
                     /locus_tag="VE567_01025"
     CDS             complement(<1..1190)
                     /locus_tag="VE567_01025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020820112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HYZ47454.1"
                     /translation="MNPPPALIVRPASGPRRMRIVATGLLVLMAGLFFAARALEPRHP
                     GWGFVRSFAEAAMVGGLADWFAVTALFRHPLGLPIPHTAIIPRNKDRIGDTLALFLKD
                     NFLIPGVVARRMRRVDVAGAVGRFLATPPEGEGRIRETGSRLVADIMEALDPERLGGM
                     IKGAIDSRLRGIDLAPLLGQALQAAIAKDRHLPLMDGVIRWAARALEANEHLIHDMVH
                     DRAGSILRWTGLDETLANKIIDGLMRLLDEVAVNPGHPLRLKAEEGLERLAEDLQFDP
                     VMQRRIAGIRDELLDNPAMRRWIDGLWEQARAAILRAARDPRSALGGKFGDALRQLGQ
                     TLQEDERLRVTINRFARRTAVGFAANYGANVVRLVSDTVRAWDTRTITRRLEDAVGRD
                     LQYIR"
     gene            complement(1238..>2128)
                     /locus_tag="VE567_01030"
     CDS             complement(1238..>2128)
                     /locus_tag="VE567_01030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007687292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYZ47455.1"
                     /translation="SDRQIPIRVVLPEAARRDLTNIENLPVPTSAGGSVPLKSVAEIR
                     FGAGPTEIRRYNQVRRIVIGADLAPSVVMSEAMKQIDALPAYKNLPQGIRKITQGDAK
                     WQGELIQNFVIAVISGILLVFAVLVLLYRRVMPPFVNMGSLLLAPLGGAVALHLAGMP
                     VSMPVFIGLLMLLGIVAKNSILLVDFAIEELGSGVPKREAILDAGHKRAQPIVMTTVA
                     MVAGMVPTAISLSGDAAWRAPMGVTVIGGLILSTLLTLVIVPAGFSIADDAERWLGKR
                     FGRLLTFKPGDEQPASQPAE"
BASE COUNT          361 a          732 c          711 g          324 t
ORIGIN      
        1 cggatatatt ggagatcgcg gccgaccgcg tcttcgaggc ggcgagtgat ggtgcgcgta
       61 tcccaggcgc ggacagtgtc gctgacgagg cggaccacgt tcgcgccgta attcgcggcg
      121 aagccgaccg ccgtgcggcg cgcgaagcgg ttgatggtga cgcgcagccg ctcgtcttcc
      181 tgcagcgtct ggccgagctg gcgcagcgcg tcgccgaatt tgccgcccag ggccgagcgg
      241 gggtcgcggg cagcgcgcag gatcgccgcg cgcgcctgtt cccaaagccc gtcgatccac
      301 cgtcgcatcg ccggattgtc gagcagttcg tcgcgaatac cggcaatgcg ccgctgcatc
      361 accggatcga attgcagatc ttcggccagc cgctccagcc cctcctcggc cttcagccgc
      421 agcggatggc ccggattgac cgcaacctcg tcgagcagcc gcatcagccc gtcgatgatc
      481 ttgttcgcga gcgtctcgtc gagcccggtc cagcgcagga tcgagcccgc gcggtcatgg
      541 accatgtcgt ggatcagatg ctcgttggcc tccagcgcgc gggctgccca gcggatcacg
      601 ccgtccatga gcggcagatg ccggtctttc gcgatcgcgg cctgcagcgc ctggccgagc
      661 agcggcgcca agtcgatgcc ccgcagccgg ctgtcgatcg cgcccttgat catgccgccg
      721 agccgctcgg gatcgagcgc ttccataatg tcggcgacga gccgcgagcc ggtttcgcgg
      781 atgcggcctt cgccttccgg cggcgtcgcg aggaagcgtc cgaccgcgcc ggcaacatcg
      841 acgcggcgca tccgccgcgc caccacgccg ggaatcagga aattgtcctt gaggaacaag
      901 gcgagcgtgt cgccgatccg gtccttgttg cgcggaatga tggcggtatg cgggatcggc
      961 aggcccagcg gatgccggaa tagggccgta actgcgaacc agtcggcaag gccgccgacc
     1021 atcgccgcct cggcaaagga gcggacaaag ccccagccgg gatgccgcgg ctcgagtgcg
     1081 cgggcggcaa agaacaaccc cgccatcagc accagcaacc ctgtcgccac gatccgcatg
     1141 cgccgcgggc cgctggcggg gcgtacgatc agggcgggcg gcgggttcat gcactatcca
     1201 aagcgcgggg ggcgccttgg ttcaaccttg cgcgttttca ctccgccggt tgcgacgcgg
     1261 gctgctcgtc gcccggcttg aacgtgagca gccggccgaa gcgcttgccc agccagcgtt
     1321 cggcgtcgtc ggcgatgctg aagcccgccg ggacgatcac cagcgtcagc aaggtcgaga
     1381 ggatcaggcc gccgatcacg gtcacgccca tcggcgcgcg ccaagcggcg tcgcccgaca
     1441 gggagatcgc ggtcggcacc atgccagcga ccatcgccac cgtcgtcatg acgatcggct
     1501 gcgcgcgttt gtggccggcg tccaggatcg cctcgcgctt gggaaccccg ctccccagct
     1561 cctcgatcgc gaaatcgacc agcaggatcg aattcttggc gacgatgccc agcagcatca
     1621 gcaagccgat gaacaccggc atcgaaaccg gcatgccggc caagtgcagc gccaccgcac
     1681 cgcccagggg cgccagcagc agcgagccca tgttcacgaa cggcggcatc acgcggcgat
     1741 agagcagcac cagcaccgcg aataccagga ggatgcccga gatcaccgcg ataacgaagt
     1801 tctggatcaa ttcgccctgc catttggcgt cgccttgcgt gatcttgcga atcccctgcg
     1861 gcagattctt gtaggccggc aacgcgtcga tctgcttcat cgcctcgctc atgacgacgc
     1921 tgggggcgag gtcggcgccg atcacgatgc ggcgcacctg gttgtaacgc cggatctcag
     1981 tggggcccgc accgaagcga atttccgcga ccgacttgag cggcaccgat ccgcccgcac
     2041 tagtgggaac cggcagattc tcgatattcg tcaaatcgcg ccgggctgcc tcgggcagca
     2101 cgacccggat ggggatttgc cggtcgga
//
LOCUS       DASQVK010000044         3539 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_66123, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000044 DASQVK010000000
VERSION     DASQVK010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3539
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66123"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..629)
                     /locus_tag="VE567_01035"
     CDS             complement(<1..629)
                     /locus_tag="VE567_01035"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003039487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYZ47456.1"
                     /translation="MRVALFSGNYNYLKEGANQALNRLVRYLEERAGCSVRVYSPVAD
                     RPAFEPAGTLVPVPSVPLPVRGEFRLALGLPADIRADVKRFAPQIVHVSTPDILNTRA
                     QTLAMKLGVPIVASMHTLFETYLEYYRLGWARPIVEAHLRRFYRRSSHVLAPTSELAE
                     EVMRFRGDDGASVWSRGVDHQLFHPNRRDQAWRRAQGIADRETAILFFGR"
     gene            complement(632..1069)
                     /locus_tag="VE567_01040"
     CDS             complement(632..1069)
                     /locus_tag="VE567_01040"
                     /inference="COORDINATES: protein motif:HMM:NF016060.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HYZ47457.1"
                     /translation="MGDAIEVRPSGIAARLISRNAGAMLARNTVVSCAAFAFDLLLLW
                     ALVRWTGMDKLVAAAIGFVAANTFHYALGRAWIFYGTERRVIAGYIYFLTNAAIGLGV
                     TILLYAAFLRFTALDYLVSRVIVSVFAGLAVFLLNAVLNFRRL"
     gene            complement(1069..1758)
                     /locus_tag="VE567_01045"
     CDS             complement(1069..1758)
                     /locus_tag="VE567_01045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010542606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HYZ47458.1"
                     /translation="MLTWFRRRYLDLLGSIYIYNEHRGYTAIQRVLDAVRARSPDDKA
                     LIAAVEKHRADERKHYVMFRRWFERRGVMPFAVDRTCGHIDRFVEIMFRSTIDRLDTQ
                     AVIDRDELFERLCRVISLTERRGYRQVAILLAHPLVRSDPVLMRIFRIIEKDEPSHWA
                     PYDGWLAAHARRAPNRWERAIDSFIHSELLFLKLPLLFLNPYLRRRDDWADANEPRER
                     RAPAPAMDVAC"
     gene            2038..2733
                     /locus_tag="VE567_01050"
     CDS             2038..2733
                     /locus_tag="VE567_01050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010542835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HYZ47459.1"
                     /translation="MRNLTIAAIALGLTGPAFGANLVTNGSFEAGNTGFTSSYGYVAP
                     APNSMYPEGVYTVSNDASVVHDQWVAAHGVGGSGNFLIVNGKTEAGNFDVWRSGSINV
                     TAATDYFFEAFATNLCCNANRTGPASLLTFKIVGDVTGSQVLGTFSTANAAVGTWQPL
                     SNLWNSGANTSVQLFLVNASTDYFGNDFGVDQINFDTQSAIPEPATWALMIGGFGLAG
                     AALRRKASKVSFA"
     gene            complement(2811..>3539)
                     /locus_tag="VE567_01055"
     CDS             complement(2811..>3539)
                     /locus_tag="VE567_01055"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYZ47460.1"
                     /translation="LAYDAPAAIPAAPPVENVAIEASDGTLIYGTYYPAYEARAIVLL
                     FHQAGASREEYATVAPKLAAAGYSALAIDQRSGGDMFGHNETAAEQPLPASYLDARKD
                     IEAALAWSRRMEVPVFLVGSSYSSALVLLVAADHPGQVAGVASFSPGEYLGRDGLVRE
                     AAARVRVPTLIVTTAEAGERLRCGPIVAALRHAGAELEYEPLVQGKHGAAVLIEAMNP
                     GGARASFGILLRWLWRYTEPATRA"
BASE COUNT          706 a         1153 c         1099 g          581 t
ORIGIN      
        1 cggccgaaga agaggatagc ggtttcgcgg tctgcaatgc cttgcgcccg ccgccaagcc
       61 tggtcgcgtc tgttcggatg gaacagctgg tggtccacgc cgcgactcca gacgctcgca
      121 ccgtcgtcgc cacggaaccg catgacctct tcggcgagtt cggacgtcgg cgcaagcacg
      181 tgactgctcc gacggtaaaa gcggcggaga tgcgcttcca cgatcggccg cgcccagcca
      241 aggcgataat attcaagata ggtctcgaac agcgtgtgca tgctggcgac gatgggaacg
      301 ccgagcttca tggccagcgt ctgcgcccgc gtgttcagga tgtcaggggt cgacacatgg
      361 acgatttggg gcgcgaaccg cttcacatcg gcacgaatgt cggccggcag cccaagcgcg
      421 aggcgaaact cgccgcgcac tggcagcggc acggatggga ccggcaccag cgttcccgcc
      481 ggctcgaatg ccggccgatc ggccaccggc gaatagacgc gaaccgaaca ccccgcccgc
      541 tcctccagat aacgcaccag ccggttgagg gcttggttgg caccctcctt cagatagttg
      601 taattgcctg agaacagcgc gacccgcatc gtcagagccg gcggaaattg agaacggcgt
      661 tcagcagaaa caccgcgagg ccagcgaaga ccgatacgat cacgcgagac acgagataat
      721 cgagagccgt gaatcgcaaa aaggcggcgt acagcaatat cgtcactcca aggccgatgg
      781 cggcgttggt gaggaaatag atatagcctg cgatgacgcg ccgttcggtg ccgtagaaaa
      841 tccaggcgcg gccaagcgcg tagtgaaatg tgttcgcggc cacgaagccg atcgcggccg
      901 ccaccaattt gtccatgccg gtccagcgca ccaacgccca gagcagcaac agatcgaagg
      961 caaaggccgc gcagctgacg acagtgttgc gcgccagcat cgcaccggca ttccgcgaga
     1021 tcagccgggc cgcgatcccg ctcggtcgca cttcgatagc gtcccccatc agcaggcaac
     1081 atccatcgcc ggcgcaggcg cgcgccgctc gcgcggctcg ttcgcatcgg cccaatcatc
     1141 tcgccgccgc agatacgggt tcagaaacag gagcggcaat ttcagaaaca gcagctcgga
     1201 atggatgaag ctgtcgatcg cgcgctccca tcggttgggg gcgcgtctgg catgagccgc
     1261 aagccaacca tcataaggcg cccaatggct gggttcgtcc ttctcgatga tgcgaaagat
     1321 cctcatcagg acgggatcgc tgcgcaccag cggatgcgcc agcaggattg cgacctgacg
     1381 atagccgcgc cgctcggtca acgaaatcac gcggcagagc cgctcgaaca gctcgtcgcg
     1441 atcgatcact gcctgagtgt ccagccgatc gatcgtcgag cggaacatga tttcgacaaa
     1501 acggtcgata tgaccgcagg ttcggtcgac cgcgaacggc atcacgcccc gccgttcgaa
     1561 ccagcggcga aacatcacat aatgtttgcg ttcgtcggcg cggtgcttct cgacggccgc
     1621 gatcaaggcc ttgtcgtcgg gcgagcgagc gcgcaccgca tccagcaccc gctggatcgc
     1681 ggtgtatccc cgatgctcat tgtagatgta gatcgatccg agaaggtcga gatagcgtcg
     1741 gcgaaaccaa gtcagcatta atgcgcctct tcaatccagc gcaaacgctc gatgggttgt
     1801 ttcggtcccg tttcctattg agacgcgatg cattgcagga agcgcaggcg cgcgcgccca
     1861 agcgaatcga cgggtgctat ttcccaaggg cccggcggaa gtctcgcccc cgcggctgct
     1921 tgcggttcgg cattgtccca cagcgagacg gtccaagata gttaatcgta aaataacgct
     1981 ctcggaacga tcggcgcgcc agcgtaaaag cagcaacgga cagcaagggg atttcatgtg
     2041 cgtaacttga ccatcgcggc gatcgcgctc ggcctgaccg gcccggcctt tggcgccaac
     2101 ctcgtcacca atggcagctt tgaggcaggc aataccggct tcacttcaag ctatggctat
     2161 gtcgcgccag cgccaaactc gatgtacccg gaaggcgtgt acaccgtttc caacgatgca
     2221 agcgtggtgc atgaccaatg ggtcgcggcg cacggcgtcg gcgggtcggg caatttcctg
     2281 atcgtcaacg gcaagaccga agccggcaat ttcgacgtct ggcggtcggg cagcatcaac
     2341 gtcaccgcgg caaccgatta cttcttcgag gcgttcgcga ccaatctgtg ctgcaatgcc
     2401 aaccggaccg gcccggcatc gctgctgacc ttcaaaattg tcggcgacgt gaccggctcg
     2461 caggtgctcg gcactttctc gaccgcaaac gcagctgtcg gcacctggca gccgctttcg
     2521 aacctctgga actcgggcgc gaacaccagc gtgcagctct tcctggtcaa cgcgagcacc
     2581 gattatttcg gcaacgactt cggcgtcgac cagatcaact tcgacaccca atcggctatc
     2641 ccggagccgg cgacctgggc gctgatgatc ggcggcttcg gcctggccgg cgcggcgctg
     2701 cgccgcaagg cgagcaaggt ctcgttcgcc taaacgccaa gcaagacacg gacgaggggc
     2761 cgtcccgcga ggggcggccc tttttcgtaa gccgatatgc tgccccgcgt tcaggcgcgc
     2821 gtggccggct cggtgtagcg ccaaagccag cggagcagga tgccgaagct tgcgcgggcc
     2881 ccgcccgggt tcatggcttc gatcagcact gcggcgccgt gctttccctg gacgagcggc
     2941 tcatattcaa gctccgcgcc ggcatgacga agcgccgcca cgatcggccc gcaacgcagc
     3001 cgctcgccgg cttccgcggt cgtgacgatc agcgtcggca cccgcacgcg cgctgcagcc
     3061 tcgcgcacca ggccatcgcg gcccagatat tcgccgggcg agaaggacgc gacgcccgcg
     3121 acttgccccg gatggtccgc cgcgaccaac agcacgaggg cagagctgta gctgctgccg
     3181 accaggaata ccggcacctc catgcgccgg ctccacgcca gcgcggcctc aatatccttg
     3241 cgagcatcga gatagctggc cggcaaaggc tgctccgcgg ccgtttcatt gtggccgaac
     3301 atgtcgccgc ccgaccgttg gtcgatcgca agcgcgctat agccggcggc cgccaatttg
     3361 ggcgccaccg tcgcatattc ttcccggctc gcgcctgcct ggtgaaaaag cagcacgatg
     3421 gcccgcgcct cataagcggg atagtaggtg ccgtagatga gggttccgtc gcttgcctcg
     3481 attgccacat tctcgaccgg cggcgcggcc ggaattgcgg caggcgcatc gtaagcgag
//
LOCUS       DASQVK010000045         2561 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_445654,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000045 DASQVK010000000
VERSION     DASQVK010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2561
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445654"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2297
                     /locus_tag="VE567_01060"
     CDS             <1..2297
                     /locus_tag="VE567_01060"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010407622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYZ47461.1"
                     /translation="GNQHEIWMLDAASFHNQVLAARAAGISAIGLWRLGTEDPSVWQI
                     FGRSHRAGGDIRAIEHIPAGTEVDIEGTGEVLRVGSTPVQGTRRLAIDRDGLVTDETF
                     VQLPLPFSIERAGYKPGLVALTFDDGPDPDWTPKILDVLKAKHAPAAFFVIGENALTY
                     RGLLEREIREGHEVGNHTYTHPNLGETSNPVTRLELNATQRLVEAFAGRSMRLFRAPF
                     FGDAEPTTADEIVPVLVGQNLGYLSVGLHVDPGDWTRPGVQAIVDRTVAGVIASNEER
                     SGNIVLLHDAGGNRAQTVAALPQIIDALRARGYRLVPVSALIGLTPEQVMPPLTADEQ
                     AAARTDLYLFTALSMLQTGLVWLFAIAITLGIARALLLSGLALWQARREQKERPPVIH
                     TDRFVSVLIPAFNEARVIEASVRRVLASAAVQLEVIVIDDGSKDGTGDIVERAFAGEP
                     RVRLLRLENGGKARALNHGLAIAKGEFIVALDADTQFPRKTIARLARWFEDPRIGAVA
                     GNAKVGNRINLITRWQALEYITAQNLERRALARLDAMTVVPGAVGAWRAEALRQVGGY
                     PPDTLAEDQDLTIAIQRAGWKVRYDQDAVAFTEAPESFKALAKQRFRWAFGTLQCLWK
                     HGAVLRTGTPRGLARVGLPQAMLFQVGFAAISPVIDLALVFSIVSTAMRVHAHGWAQT
                     HTDLAVMAIYWFAFTAIDVLAASIAFALSTRERWGLMWLLIPQRIGYRQIMYYVVLKA
                     LAAAIRGPRVGWGKLERSGRVKTA"
     gene            complement(2298..>2561)
                     /locus_tag="VE567_01065"
     CDS             complement(2298..>2561)
                     /locus_tag="VE567_01065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase TldD-related protein"
                     /protein_id="HYZ47462.1"
                     /translation="VDIVSGKFVFSCTEAYRIENGRLGAPIKGATLIGDGPTVLTKVR
                     AIGNDFALDEGVGVCGKAGQSVPAGVGQPSLLIEGLTVGGTAA"
BASE COUNT          412 a          853 c          864 g          432 t
ORIGIN      
        1 gtggcaacca gcatgagatc tggatgctcg acgccgcctc cttccacaat caagtgctgg
       61 cggcacgcgc agcgggaatc agcgcgatcg gcctgtggcg gctcggcacc gaagacccgt
      121 cggtctggca gattttcgga cgatcgcacc gcgccggcgg cgacattcgc gcgatcgagc
      181 atatccccgc cggcaccgaa gtggacatcg aagggacggg cgaagtgctg cgcgtcggct
      241 cgacgcccgt gcagggaacc aggcgactcg cgatcgacag ggacggcctg gtcacggacg
      301 aaacgttcgt gcagctgccg cttcccttct cgatcgagcg ggcaggctac aagccgggac
      361 tggtggcgct gaccttcgac gacgggcccg atccggactg gacgcccaag attctcgacg
      421 tcctcaaagc caagcacgcg ccggcagcct tcttcgtcat cggcgaaaat gcgctcacct
      481 atagaggcct gctcgagcgc gagatccgcg agggccatga agtcggcaat cacacctaca
      541 cacaccccaa tctcggggag accagcaatc ccgtcacgcg gctggagctg aatgcgaccc
      601 agcggctggt ggaggcgttc gcaggccggt cgatgcgctt gtttcgcgcc ccgttttttg
      661 gtgacgccga gccgacgaca gccgacgaaa tcgtgccggt gctggttggc cagaatctcg
      721 gctacctttc ggtcggtctg catgtcgatc ccggcgattg gacccggccc ggcgtgcagg
      781 cgatcgtcga ccgcaccgtt gcgggcgtga tcgcgtcgaa cgaggagcgg agcggaaaca
      841 tcgtgctgct gcacgatgcc ggcggcaatc gcgcgcagac ggtcgcggcc ctgccacaga
      901 tcatcgacgc gctccgtgcg cgcggctatc gcctcgtgcc ggtctccgcg ttgatcgggc
      961 tcacgccgga gcaagtgatg ccgccgctca ctgccgacga gcaggccgcc gcgcgaaccg
     1021 atctctatct cttcaccgcg ctcagcatgt tgcagaccgg gctggtctgg ctgttcgcca
     1081 tcgcgatcac cctgggcatc gctcgcgcgc tgctcctgtc gggccttgcc ttgtggcagg
     1141 cgcggcgcga gcagaaggag cgtccgcctg tcatccacac cgaccgcttc gtttcggtgt
     1201 tgatcccggc gttcaacgaa gcgcgcgtga tcgaggcttc ggtacgccgc gtgctggcga
     1261 gcgccgcggt gcagctggaa gtgatcgtca tagacgacgg ctcgaaggac ggcaccggcg
     1321 acatcgtcga acgggcgttt gccggcgagc cgcgcgtcag gctgctgcgg ctggaaaatg
     1381 gcggcaaggc gcgcgcgctg aaccacggcc tcgcaattgc caagggcgag ttcatcgtcg
     1441 cgctggacgc cgatacgcaa ttccccagga agacgatcgc ccggctcgcc cgctggttcg
     1501 aggatcctcg tattggcgcg gtggcgggca acgccaaggt cggcaaccgc atcaacctga
     1561 tcacgcgctg gcaggcgctc gaatatatca ctgcccagaa tctcgagcgg cgcgcgctgg
     1621 cccggctgga cgctatgacg gtcgtccctg gcgcggtcgg cgcgtggcgc gcggaagcgt
     1681 tgcgacaggt cggcggctat ccgcccgata ccttggcgga agaccaggac ctgacgatcg
     1741 cgatccagcg cgccggctgg aaagtgcgct acgatcagga cgcggtggcg ttcaccgaag
     1801 cgccggagag cttcaaggcg ctcgccaagc agcgcttccg ctgggccttc ggcacgctgc
     1861 aatgcctatg gaagcacggc gcggtgctgc ggaccggcac gccgcgcggg ctcgcacgcg
     1921 tgggtttgcc ccaggcgatg ctgttccagg tcggctttgc ggcgatctcg cccgtcatcg
     1981 acctggcgct ggtcttcagc atcgtctcga ccgcgatgcg cgtgcacgcg catggctggg
     2041 cgcagaccca taccgacctg gcggttatgg cgatctactg gttcgcattc actgcgatcg
     2101 acgtgctggc cgcctcgatc gctttcgcgc tgtcgacgcg cgagcgctgg ggcctgatgt
     2161 ggctgctgat cccgcagcgg atcggctacc ggcagatcat gtattatgtc gtgctgaagg
     2221 cccttgccgc agccattcgc ggcccacggg tcggctgggg caagctggag cggagcgggc
     2281 gcgtgaagac cgcctgatca tgccgccgtg ccgccgacgg tcagtccttc gatcaggagg
     2341 ctcggctggc cgacgcccgc gggcacgctc tgtccggcct tgccgcagac gcccacaccc
     2401 tcgtcgagcg cgaagtcgtt gccgatcgcg cggactttgg tgagcaccgt cggcccgtcc
     2461 ccgatcagcg tcgcgccctt gatcggtgcg ccgagcctgc cgttctcgat gcggtaagcc
     2521 tcggtgcagg aaaatacaaa tttgcccgag acgatatcga c
//
LOCUS       DASQVK010000046         2197 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_160910,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000046 DASQVK010000000
VERSION     DASQVK010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2197
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160910"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..206
                     /locus_tag="VE567_01070"
     CDS             <1..206
                     /locus_tag="VE567_01070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47463.1"
                     /translation="RASPRSSSQSIRPRTNRDLTEVTDRQMQRLVRAFRAIRSVRLRA
                     SIVSFAEAVALPKRFHGQRRKGD"
     gene            complement(236..>2197)
                     /locus_tag="VE567_01075"
     CDS             complement(236..>2197)
                     /locus_tag="VE567_01075"
                     /inference="COORDINATES: protein motif:HMM:NF017964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amylo-alpha-1,6-glucosidase"
                     /protein_id="HYZ47464.1"
                     /translation="GKKPALLSAALSQDNVLFTSHLTNRPLPPLGGQSLPQGVIHVER
                     QRLIFEGGLYERITLSNFGPAETQVPLELEFDADFRDMFEVRGVSRAARGALLAPEIG
                     PSHVCLHYRGLDGVVRQSCLRFSRTPRRLSDRKAEFTIRLRHAASTSLYVEIAPGPGD
                     PPSRDRFRAAAARARFGMRSKRRRGATVFSPARVFNDWVEKSRADLALLTTELKTGPF
                     PYAGIPWFSTPFGRDAIITSLQMLWLDPSLARGVLAFLAANQAKGRSAFQDSAPGKIM
                     HETRKGEMVALDELPFGLYYGGVDTTPLFVMLAGAYADRTADLAFIEEIWPALLGAMG
                     WIEGDGDSNGDGFVDYMRAAASGLANQGWKDSQDSVFHADGSDPAGPIALVEVQGYCY
                     AAFRAMAMLAARRGDEQRSAHWNGQADRLRDATEARFWMHEKGLYALALDGNGRPCRV
                     LSSNSGQLLYTGLPSPERARAVIDNLLTAPFNSGWGLRTLAEGEARYNPMSYHNGSIW
                     PHDTALCVAGMARYGERAGVVRILDEMFEAAVRFEMRLPELYCGFERRGRGDAPVAYP
                     VACLPQAWASGSLFMLLQAALGISVSAWREEIRVHEPRLPTGIESLEIRNLAVGEKRV
                     NLSFQRVGTGIVAYSDQHFSGLVPIMLRA"
BASE COUNT          401 a          749 c          724 g          323 t
ORIGIN      
        1 aacgcgccag cccacgcagc tcctcacaaa gcattaggcc ccgcacgaat cgcgatctca
       61 ccgaggtgac ggatcggcag atgcaacgtc tcgttcgcgc cttccgcgcg atccgcagcg
      121 tcagactgcg tgcatcgatc gtcagtttcg ccgaagccgt cgcgctgccg aagcgattcc
      181 acggacaaag gcgaaaaggc gactagccct gccggtcggg tctgcccgcc aaccctcagg
      241 cgcgcagcat gatcggcacc aggccgctga aatgctggtc tgaataagcc acaatgcccg
      301 tgccgacgcg ctggaagctg agattcaccc gcttctcgcc gacggcaaga ttgcggattt
      361 cgagactctc gatgccggtc ggcagccgcg gctcgtgcac gcgaatctcc tcgcgccagg
      421 ccgaaaccga gatgcccaag gcggcctgca gcagcatgaa caaggagccc gaggcccagg
      481 cctgcggcag acaggcgacg ggataggcga ccggcgcatc gccgcgtccg cgccgctcga
      541 agccgcaata aagttccggc agccgcatct cgaaacgcac cgcggcttcg aacatctcgt
      601 cgagaatgcg cacgacgccg gcgcgctcgc cgtagcgcgc cattcccgcc acgcagagcg
      661 cggtgtcgtg cggccagatc gagccgttgt gataggacat cggattgtag cgcgcttcgc
      721 cttcggccag cgtgcggagg ccccaacccg aattgaacgg ggcggtgagc agattgtcga
      781 tcaccgcgcg cgcccgctcc ggcgacggca ggcctgtata aagcaattgg ccggaattcg
      841 agctgagcac ccggcacggg cggccgttgc cgtcgagcgc cagagcgtag aggcccttct
      901 cgtgcatcca aaagcgggcc tccgtcgcgt cgcgcagccg gtcggcttgc ccgttccagt
      961 gcgccgagcg ctgctcatcg ccccgccgcg ccgccagcat cgccatcgcc cggaacgccg
     1021 catagcaata gccctgcacc tcgacgagcg cgatcggccc ggcgggatcg ctgccgtcgg
     1081 cgtggaagac cgaatcctgg ctgtccttcc aaccctggtt ggcaagcccg cttgccgcgg
     1141 cgcgcatata gtcgacgaag ccgtcaccgt tcgaatcgcc gtcgccctcg atccagccca
     1201 tcgcgccgag cagcgccggc cagatttcct cgatgaaagc gagatcggcg gtgcggtccg
     1261 cataggcgcc ggccagcatg acgaagagcg gcgtcgtatc gacgccaccg tagtagaggc
     1321 cgaagggcag ctcatcgagc gcgaccatct cgcctttgcg cgtctcgtgc atgattttgc
     1381 cgggcgccga atcctggaag gccgaacgcc ccttggcctg attcgctgcg agaaaggcga
     1441 gaacgccgcg cgccagcgag ggatcgagcc acagcatctg cagcgatgtg atgatggcgt
     1501 cgcggccgaa cggcgtcgag aaccacggta tgcccgcata cgggaacggg ccggtcttca
     1561 gttcggtcgt caacagcgcg agatcggcgc gggatttttc gacccagtcg ttgaacacgc
     1621 gtgccgggct gaagaccgtt gcgccgcggc ggcgtttgct gcgcatgccg aagcgggccc
     1681 gcgccgcggc ggcacggaag cggtcgcgcg agggcggatc gccgggcccc ggcgcgatct
     1741 cgacatagag cgaggtcgag gcggcgtgcc gcagccgtat cgtgaattcc gccttgcggt
     1801 cgctcagccg acgtggcgtg cgcgagaaac gcaagcagga ttggcgcacg acgccgtcga
     1861 gaccgcgata gtgcagacag acatgcgaag gcccgatctc cggcgccaaa agcgcgccgc
     1921 gcgccgcccg gctgacgccg cgtacttcga acatgtcgcg aaaatcggca tcaaattcga
     1981 gttccagcgg aacctgcgtc tccgccgggc cgaaattgct cagggtgatg cgctcgtaga
     2041 gcccgccctc gaaaatcagg cgctggcgct cgacatggat gacgccctgc ggcaacgact
     2101 ggccaccgag cggcggcagc ggccggttgg tcagatgcga cgtgaacagg acgttgtcct
     2161 gactgagcgc cgcgctgagc agcgccggct tcttgcc
//
LOCUS       DASQVK010000047         2983 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_34625, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000047 DASQVK010000000
VERSION     DASQVK010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2983)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2983)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2983
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34625"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(13..159)
                     /locus_tag="VE567_01080"
     CDS             complement(13..159)
                     /locus_tag="VE567_01080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47465.1"
                     /translation="MFKSFEARKTFSAILCTLLFSATCVLSAVGPAGAVEVRPASVVS
                     TPLA"
     gene            369..1406
                     /gene="pspF"
                     /locus_tag="VE567_01085"
     CDS             369..1406
                     /gene="pspF"
                     /locus_tag="VE567_01085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein operon transcriptional
                     activator"
                     /protein_id="HYZ47466.1"
                     /translation="MERESVFIGQSLAFLDSVERASRAAALNRPVLVIGERGTGKELV
                     AERLHRLSPRWDGPLVVMNCAALPETLIEAELFGHEAGAFTGATRARAGRFEEADGGT
                     LFLDELGTLSAAAQERLLRAVEYGEVTRIGASRPMRVDVRIVAATNENLPILVEQNRF
                     RADLLDRLSFEVITLPPLRAREGDVPVLADHFGRRMAAELGWTRWPGFSRPAMEALAG
                     YEWPGNVRELRNVVERAVYRWEDQAHPVDGIEFDPFASPWRPKGDAARSLSPAAASAA
                     APSAPHAANDELECEDFKAACDAHERKLLEAALRRCRYNQRLTAKALALTYDQLRHAL
                     RRHDLLQAGNS"
     gene            1438..1992
                     /locus_tag="VE567_01090"
     CDS             1438..1992
                     /locus_tag="VE567_01090"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYZ47467.1"
                     /translation="MRIFPCVAVAAILIPGAAHASSMVIGSGFARMCYEAADAERATV
                     GTIEACDRALNEEALSFDDQVATFVNRGILRARTNDMAGALADYDQAIRLNPAQPEAY
                     LNKGALVLKVQRDWRAARDLFAAALERHTSRPEFAYFGRAITNELAGDYAAARADYQK
                     ASEFAPKWDEPRKELMRFSVRKRG"
     gene            2094..2738
                     /locus_tag="VE567_01095"
     CDS             2094..2738
                     /locus_tag="VE567_01095"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004210428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HYZ47468.1"
                     /translation="MAFELPPLPYDKSAFGDLLSPETFDFHWGKHHRAYVTKTNELAP
                     QAGLDGRKLSDVIRSAHQSGNRGLFNNSGQLWNHSFYWQCLSPERQEPTGVLKQKIEE
                     AFGSADALIDALKTESVNHFASGWGWLVLDGDRLKVTSLHDADTPVAYEGMKPLLTID
                     VWEHAYYIDYRNERPRYVETLLKNAINWDFVGQNLDGRGVERADQEPAMVSEPA"
     gene            complement(2779..>2983)
                     /locus_tag="VE567_01100"
     CDS             complement(2779..>2983)
                     /locus_tag="VE567_01100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="septation protein IspZ"
                     /protein_id="HYZ47469.1"
                     /translation="TVNWVGFFLFMALLNEAVWRTQSWDFWVGFKLWGAVPLTLLFAI
                     ANIPMLLKHGLSDKKEAPLPPEG"
BASE COUNT          524 a          951 c         1008 g          500 t
ORIGIN      
        1 gcagtgatgt cgtcaggcga gaggcgtgct gacgacggaa gcggggcgaa cctccaccgc
       61 gccggcgggg ccgaccgcgc tgagcacgca cgtggcgctg aacagcagcg tgcagaggat
      121 ggcggagaag gtcttgcgag cttcgaacga cttgaacatg gcgtgctcct gtttgatcct
      181 gtgaacctgc gccaccttgc agtggcttcg tcccaacttt tgcagggggc gtgccaagtc
      241 cagaaaatgg ctaaaatctg cggtttcgca gtgagacgca gtcggcatcc gcaaatcgct
      301 cttgccaagg attgggaaat ttccccatgt tgtggcgagc ggattcatgt ctgccgaggt
      361 gggagcgcat ggagcgggaa agcgtcttta tcggccagtc gctggccttt ctcgactcgg
      421 tcgagcgcgc cagccgggcg gcggcgctga accggcccgt gctggtgatc ggcgagcgcg
      481 gcaccggcaa ggagctggtc gccgagcgcc tgcaccgcct gagcccgcgt tgggacgggc
      541 cgctggtcgt catgaactgc gcggcactgc ccgagacgct gatcgaggcg gagctgttcg
      601 ggcatgaggc gggcgccttc accggcgcca cgcgagcgcg cgccggacgg ttcgaggaag
      661 ccgatggcgg caccttgttc ctcgacgagc tcggcacgct ctcggccgcg gcgcaggagc
      721 ggctgctgcg cgcggtcgaa tatggcgaag tgacgcggat cggcgcgtcg cggccgatgc
      781 gcgtcgatgt gcgcatcgtc gctgcgacca acgagaatct gccgatcctc gtggagcaga
      841 accgcttccg cgccgacctg ctcgaccggc tgagcttcga agtgatcacc ttgccgccgc
      901 tccgcgcgcg cgagggcgat gtgccggtgc ttgccgatca tttcggccgg cgcatggctg
      961 ccgagctggg gtggacccgc tggccgggct tttcccgccc ggcaatggag gcgctggccg
     1021 gctatgaatg gcccggcaat gtgcgcgagc tgcgcaacgt ggtcgagcgc gccgtctatc
     1081 gctgggaaga ccaggcgcac cccgtcgacg gcatcgaatt cgatcctttc gcctcgccgt
     1141 ggcggcccaa gggcgacgcg gcgcgctcgc tgtccccggc cgctgcgagt gcggccgcgc
     1201 cgtctgcccc gcatgcggcg aacgacgagc tggagtgcga ggacttcaag gcagcgtgcg
     1261 atgcgcatga gagaaagctg ctggaagcgg cgctgcgccg ctgccgctac aatcagcggc
     1321 tgaccgccaa ggcgctggcg ctgacctacg accaattgcg ccatgcgctc aggcgccatg
     1381 atttgctgca agccggcaat tcgtgatatt cttgcgcctc taacagggag aggtgtgatg
     1441 cgcatattcc cctgtgtcgc ggtggccgcg atcctgatcc ccggtgccgc ccacgcgtcc
     1501 agcatggtga tcgggtccgg ctttgcccgg atgtgctacg aggcggctga cgccgagcgc
     1561 gccacggtgg gcaccatcga agcctgcgat cgggcgttga acgaagaggc gctgtcgttc
     1621 gacgaccagg tcgccacctt cgtcaatcgc ggcatcctgc gcgcgcggac caacgacatg
     1681 gcgggcgcgc ttgccgacta tgaccaggcg atcaggctga accccgccca gcctgaagcc
     1741 tatctcaaca agggggcgct ggtcctcaag gtgcagcgcg actggcgggc ggcgcgcgac
     1801 ctgttcgcgg cggcgctgga gcggcacacg agccggcccg aattcgccta tttcggccgt
     1861 gccatcacga acgagctggc cggcgactat gccgcggccc gggcggacta tcaaaaggca
     1921 agcgagttcg cccccaaatg ggacgagccg cggaaagagc tgatgcgctt ttcagtgcgc
     1981 aagcgcggct gatcgaagct ttctgcaggc ctgaacgaga attctcgttc actcggcgta
     2041 ggccggtgcg ttagggggag ccccgaatcc aaccccctga cggagagtag cgtatggctt
     2101 tcgaactgcc cccgcttccc tatgacaaaa gcgccttcgg cgacctgctt tcgcccgaga
     2161 cgttcgattt ccattggggg aagcatcacc gcgcctatgt aaccaagacc aatgagctgg
     2221 cgccgcaggc gggccttgac ggccgcaagc tgtcggacgt gatccgctcc gcgcaccaaa
     2281 gcggcaaccg cggcctgttc aacaattccg gccagctctg gaaccacagc ttctactggc
     2341 aatgcctcag ccccgagcgg caggagccga ccggcgtgtt gaagcagaag atcgaggaag
     2401 cgttcggctc ggccgatgcg ctgatcgacg cactcaagac cgagtccgtc aatcacttcg
     2461 ccagcggttg gggttggctg gtgctcgacg gcgaccggct gaaagtcacg tcgctgcacg
     2521 acgccgacac gccagtcgcc tatgaaggca tgaagccgct gctgaccatc gatgtgtggg
     2581 agcacgccta ttacatcgat tatcgcaacg agcggccgcg ctatgtcgag acgctgctca
     2641 agaacgcgat caactgggac tttgtcggcc agaacctcga tggccgcggc gtcgagcgcg
     2701 cggaccagga gccggcgatg gtcagcgagc cggcttgatc agaatgcgtc atccctccgg
     2761 gaggggggat gacgatcctc acccttcggg cgggagcggg gcttccttct tatcgctcag
     2821 gccgtgcttc agcagcatcg ggatgttcgc gatcgcgaac aacaaggtca gcggcactgc
     2881 gccccatagc ttgaagccta cccagaaatc ccagctctgg gtgcgccaga ccgcctcgtt
     2941 cagcagcgcc atgaacagga agaagccgac ccaatttacg gtc
//
LOCUS       DASQVK010000048         2092 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_34793, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000048 DASQVK010000000
VERSION     DASQVK010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34793"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1194
                     /locus_tag="VE567_01105"
     CDS             <1..1194
                     /locus_tag="VE567_01105"
                     /EC_number="2.7.7.65"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015456917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA];
                     GO_function: GO:0071111 - cyclic-guanylate-specific
                     phosphodiesterase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional diguanylate
                     cyclase/phosphodiesterase"
                     /protein_id="HYZ47470.1"
                     /translation="NGHEIGDATLKLAAELIQLNAPEGALIARLGADEFGVMFSYDGT
                     RRDMVDAFAERLVADLGRRLDVGGAAIHTGASIGIAHCEAGGEGIEKLLRRADIAMFA
                     SKNAGRNRYHWFDESMERELNMRNAIEAGMREGIPLGQFVPYYEQQIDLATGRLHGFE
                     MLARWEHPTRGLIPPDIFIPIAEETGMIADLSMSVMRQAFEEAKNWDPSLTLSVNIAP
                     SQMMDPWFAHKIIKLLVETGFPANRLEIEITEGALVENMCVAQSVVGSLKNQGIRIAL
                     DDFGTGYSSLSNLRALPFDRVKIDRSFITSLGTNSESTAVVNAITRLSDSLGLPVTAE
                     GVETPEIEQKLKTMGSYHGQGWHLGKPMEVGQVRAMLAERNLLPVRRLAAPAGERIRE
                     LRRQA"
     gene            1262..2065
                     /gene="dapF"
                     /locus_tag="VE567_01110"
     CDS             1262..2065
                     /gene="dapF"
                     /locus_tag="VE567_01110"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003043039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HYZ47471.1"
                     /translation="MRFAFHKMHGLGNDFVVVDTRAQALAMTEARARAIADRRTGIGC
                     DQLILLEPSETAELRMRIFNADGGEVEQCGNALRCVAELTGAERIETVGGLVRAAPAD
                     NGVTIDMGAPRFGWDEIPLAYPLDTADIPIGWEGLDHGGAVNVGNPHIVFFVDDLDAV
                     PLDRLGPLIERDPLFPERVNVNVAQVTGPSALRLRVWERGAGLTQACGTGACATAVAA
                     IRRGLVASPVAVSLPGGLLSIAWGPGENIRMTGPATHVFIGEADLEAFG"
BASE COUNT          351 a          713 c          682 g          346 t
ORIGIN      
        1 aacgggcacg aaatcggcga cgccacgctt aagctcgcgg ccgaactcat ccagctcaac
       61 gcgcctgaag gcgcactcat tgcccggctg ggcgcggacg aattcggcgt aatgttcagc
      121 tacgacggta cccggcgcga catggtcgac gcatttgccg agcggctggt ggccgatctc
      181 ggcaggcggc tcgacgtcgg cggggccgcg atccacaccg gcgcctcgat cggcatcgcc
      241 cattgcgagg cgggtgggga gggcatcgag aagctgctgc gccgcgccga catcgcgatg
      301 ttcgcgtcca agaatgccgg gcggaaccgc tatcactggt tcgacgagtc gatggagcgc
      361 gagctcaata tgcgcaatgc catcgaggcg ggcatgcgcg agggcatccc gctcggccag
      421 ttcgtgccct attacgaaca gcagatcgat ctcgccaccg gccggctcca cggcttcgag
      481 atgctggcgc gctgggagca tccgacgcgc ggcttgatcc cccccgacat tttcatcccg
      541 atcgccgagg aaaccggcat gattgccgac ctgtcgatgt cggtgatgcg ccaggctttc
      601 gaggaagcga agaattggga tccgtcgctc acgctttcgg tcaatatagc gccgagccag
      661 atgatggatc cctggttcgc acacaagatc atcaagctgc ttgtcgagac cggctttccc
      721 gccaaccggc tggagatcga gatcaccgaa ggcgcgctcg tcgaaaatat gtgcgtcgcc
      781 cagtcggtgg tcggcagcct caagaatcag ggcatccgca ttgcgctcga tgatttcggc
      841 actggctatt cgtcgctgtc caacttgcgc gcgctcccct tcgaccgggt gaagatcgac
      901 cgcagcttca tcacctcgct cggcaccaac agcgagagca cggcagtggt gaacgcgatc
      961 acgcgcctca gcgacagcct gggcctgccg gtcaccgctg aaggtgtcga aacgccggag
     1021 atcgagcaga agctgaagac gatgggcagc tatcacgggc agggctggca cctcggcaag
     1081 ccgatggaag tgggccaggt ccgcgcgatg ctcgccgagc gtaacctgct ccctgtccgg
     1141 cgcctcgccg cccccgccgg cgaacgcatt cgcgaactcc ggcgccaggc gtaactcacc
     1201 ctcagtccgt tcgtccgcct tcgcatggac ttggggctcc cacgccccta gatcgcgcgc
     1261 aatgcgtttc gctttccata agatgcacgg gctcggcaac gacttcgtcg tggtggatac
     1321 gcgcgcccag gcattggcga tgacggaggc gcgcgcccgc gcgatcgccg atcgccgcac
     1381 cggcatcggc tgcgatcaat tgatcctgct cgaaccgtcc gagacggccg agctgcgcat
     1441 gcgcatcttc aacgccgatg gcggcgaggt cgagcaatgc ggcaacgccc tgcgctgcgt
     1501 cgccgagctg accggcgcgg agcggatcga aactgtcggc ggcctggtcc gggccgctcc
     1561 ggccgacaat ggcgtcacga tcgacatggg ggcgccgcgc ttcggctggg acgaaatccc
     1621 cctcgcctat cccctcgaca ccgccgatat ccccatcggc tgggagggcc tcgatcacgg
     1681 cggggcggtg aatgtcggca atccgcacat cgtcttcttc gtggacgatc tcgatgccgt
     1741 gccgctcgac cggctcgggc cgctgatcga acgggatccg cttttccccg agcgcgtgaa
     1801 cgtgaacgtc gcgcaggtga ccggcccctc ggcgctgcgc ttgcgcgtct gggagcgcgg
     1861 cgcgggcctc acccaggcct gcgggacagg cgcctgcgcc actgccgtgg cagcgatccg
     1921 ccgcggcctg gtcgcctcgc ccgtcgcggt gagcctgccc ggaggtctgc ttagcatcgc
     1981 ctggggcccc ggcgagaaca tccgcatgac cggcccggcc acgcacgtct tcatcggcga
     2041 agccgatctg gaggcgttcg gatgagcgac gtcatcacgc ttggctgccg cc
//
LOCUS       DASQVK010000049         2963 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_319621,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000049 DASQVK010000000
VERSION     DASQVK010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2963)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2963
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319621"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..609
                     /locus_tag="VE567_01115"
     CDS             <1..609
                     /locus_tag="VE567_01115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017181306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYZ47472.1"
                     /translation="NFKTERAVGLEAILRGSGSWYTLEASAYHTWFSNFIYENLTGET
                     EAESGLPIYQFLQGKARFYGFEVQGTATLATFGEVKVVADGLADYTHAGIVNVGPAPR
                     IPPLRVLGGIGATSPKIDGRIEVEWNDKQNRVTEFETPTKDFTLVNAEVNIRPWGKER
                     PLSFALSANNIFDVDARRHASFLKDFAPLAGRDFRITARASF"
     gene            891..>2963
                     /gene="pepN"
                     /locus_tag="VE567_01120"
     CDS             891..>2963
                     /gene="pepN"
                     /locus_tag="VE567_01120"
                     /EC_number="3.4.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013038706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HYZ47473.1"
                     /translation="MADAPTADAMPRVIRREDYTPPNWHVPEIALEFDLDPARTVVRA
                     RLEVERASEGALALDHGGQEILGLRVDGRAVTPRNEGGRLVLDLAGDRHIVETECVIA
                     PERNTGLMGLYASGGLLCTQCEAEGFRRITPFPDRPDVLSRYSVRMTADKARFPVLLA
                     NGDRVGGGDLPDGRHWTEWRDPFFKPCYLFALVAGDLKANRDSFKTMSGREVELGIWV
                     READLPRTRHAMQALKDAMTWDERVYGREYDLDVFNIVAVADFNFGAMENKGLNIFNS
                     RYILADPETATDADYDAIAAVVAHEYFHNWSGNRVTCRDWFQLSLKEGFTVFRDQQFS
                     ADYGSAAVERINGVRNLRAAQFPEDAGPLAHPVRPDSYIEIGNFYTATVYNKGAELIR
                     MMATMLGQERFRRGADLYFERHDGQAVTCDDFVKAMEDGSGVDLSKFRLWYSQAGTPR
                     VKATLRQEARDVVVSLEQTVPPTPGQPVKQPMPIPLRMALFGAGTGARQGEERLIVLD
                     EAQADVRFEGVTEPPVLSVNRGFSAPIIVESDRGPAQLALLSAHDDDPFARYEALQQL
                     MLDTLIAHASGGTADFAPVIDAVRLTLENPALDKAFIAEAVLPPSEAFVGDQLSLVEP
                     EAIHRAREGLRAALGRELEGQWRAAYFGSASNRFELTPAAKGGRRLRSIALGFLMTGG
                     AADAPELAW"
BASE COUNT          492 a          941 c          989 g          541 t
ORIGIN      
        1 aacttcaaga ccgagcgcgc agtgggtttg gaagcgatcc tgcgtggcag cgggagctgg
       61 tataccttgg aagcgtctgc ctatcacacc tggttctcca actttatcta tgagaacctg
      121 actggtgaga ctgaggcgga aagcgggctg ccgatctatc agttcctgca ggggaaagcg
      181 cgcttctatg gtttcgaagt gcaaggcacg gcgacactcg cgaccttcgg cgaggtgaag
      241 gtcgtcgccg acgggctcgc cgattacacg catgcgggca tcgtcaatgt ggggcccgct
      301 ccgcgcattc cgccgctgcg ggtgctcggc ggcatcggcg cgaccagccc aaagatcgac
      361 ggccgcatcg aggtcgagtg gaatgacaag cagaaccgcg tgacggagtt tgagactccc
      421 accaaggatt tcacgctggt caatgccgag gtgaacattc ggccctgggg caaggagcgc
      481 ccgctgagct tcgctctttc ggcgaacaac atcttcgatg tcgatgctcg ccggcacgcc
      541 tcgttcctga aggatttcgc gccgctcgcc ggacgggatt tccggatcac ggcgagagcg
      601 agcttctgac gaaacagcga ccgggcggac tttccgcccg gtcgtgagct ggaaggcgtg
      661 tgagacgacc ttcccgtttg cgccttggtt gttggctgca cgctgcatcc cggtcgcggc
      721 gatggtgctc cagaatgcgc cgcatgtctc gctcggccgc tccccgcgaa acctgggatt
      781 cggaattgcg gcccgcgccc ctccggacgg agcgcctctc cggcagcacc tttttccgat
      841 ttcgcagctt tgcgcttccg ccccaaggcc gagccggtta ggtcatgcgc atggccgatg
      901 caccgaccgc cgacgcgatg ccgcgcgtta ttcgccgtga agactatacc ccgcccaatt
      961 ggcatgtccc cgagattgcg ctcgagttcg atctggaccc ggcgcgcacg gtggtgcgtg
     1021 cccggcttga agtcgagcgc gcctcggaag gggcgcttgc gctcgatcat ggcgggcagg
     1081 agatcctcgg cctacgcgtg gacggcagag cggttacgcc gcggaacgaa ggcggcaggc
     1141 tggtccttga tctggccggc gacaggcata tcgtcgagac cgaatgcgtg atcgcgccgg
     1201 agcgcaatac cgggctgatg gggctctacg cctcgggggg cttgctgtgc acgcagtgcg
     1261 aggcggaagg ctttcgccgg atcacgccat ttcccgaccg gccggacgtg ctcagccgct
     1321 attcggtccg gatgaccgcg gacaaggcgc gtttcccggt gctgctggcg aatggcgacc
     1381 gcgtcggcgg cggcgacttg ccggacgggc ggcattggac cgaatggcgt gatccgttct
     1441 tcaagccctg ctatctgttc gcgctggtcg cgggcgacct caaggccaat cgcgacagct
     1501 tcaagacgat gtcgggccgc gaggtcgagc tcggcatctg ggtgcgcgaa gcggacctgc
     1561 cgcgcacgcg gcacgccatg caggcgctca aggacgcaat gacctgggac gagcgcgtct
     1621 atggccgcga atatgatctc gacgtgttca acatcgtcgc ggttgccgac ttcaacttcg
     1681 gcgcgatgga gaacaaaggt ctcaacatat tcaattcgcg ctatattctc gccgacccgg
     1741 aaaccgcgac cgatgccgat tatgacgcaa tcgcagccgt cgttgctcac gaatatttcc
     1801 acaattggtc gggcaaccgg gtcacctgcc gcgactggtt ccagctttcg ctgaaggaag
     1861 gcttcacggt tttccgcgac cagcaattct cagccgatta cggatcggca gccgttgaac
     1921 gcatcaacgg ggtccgcaac ttgcgcgctg cgcagttccc ggaggatgcg ggcccgctcg
     1981 ctcatccggt gcggcccgat tcctatatcg agatcgggaa tttctacacc gcgaccgtct
     2041 ataacaaggg cgccgagttg atccggatga tggcgacgat gttgggccag gagcggttcc
     2101 ggcggggtgc cgatctctat ttcgagcggc atgacggcca ggccgtcacc tgcgacgatt
     2161 tcgtgaaggc gatggaagac ggcagcgggg tcgatctgtc caagttccgg ctttggtatt
     2221 cgcaggccgg cacgcctcgc gtgaaagcga cgcttcggca ggaagcccgc gacgtggtcg
     2281 tctcgcttga gcagaccgtg ccgcccacgc ccggccagcc ggtcaagcag ccgatgccga
     2341 tcccgttgcg catggcgctg ttcggcgccg gcacgggcgc ccgccagggt gaggagcggc
     2401 tgatcgtgct ggatgaggcg caggcggacg ttcgcttcga aggcgtgaca gagccgccgg
     2461 tgctctccgt caatcgtggt ttctccgcgc cgatcatcgt cgagagcgat cgcggcccgg
     2521 cccaactcgc gttgctctcc gcgcacgatg acgatccctt cgcgcgctac gaggcgctcc
     2581 agcagctcat gctcgacacg ctgatcgccc atgcgagcgg gggcaccgcc gacttcgcgc
     2641 cggtgatcga cgccgtgcgg ctgacgcttg aaaaccccgc cctcgacaag gctttcatcg
     2701 ccgaggccgt gctgccgccg tccgaagcct ttgtcggcga tcagctgagt ttggtcgagc
     2761 cggaagcgat tcaccgcgcc cgcgaagggc tgcgtgcggc gcttggccgc gagctggagg
     2821 ggcaatggcg cgcggcctat ttcggcagcg cttccaaccg tttcgaactc acgcccgcgg
     2881 ccaagggcgg gcgacgcctg cgctcgatcg cgctcgggtt cctgatgacc ggcggggcgg
     2941 cggacgcgcc cgagctcgcg tgg
//
LOCUS       DASQVK010000050         2763 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_351075,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000050 DASQVK010000000
VERSION     DASQVK010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2763)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2763)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2763
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351075"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..411
                     /locus_tag="VE567_01125"
     CDS             <1..411
                     /locus_tag="VE567_01125"
                     /inference="COORDINATES: protein motif:HMM:NF012273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione binding-like protein"
                     /protein_id="HYZ47474.1"
                     /translation="NTPERLRYTYWMHYAEGSAMPPLLLKLLFTLMPKRAPALLRPLV
                     RKVANQALTTVVIPQLKQHMAFWEAELGKSEWFAGHEFSGADIQMSFPLEAAAARGGL
                     DEGHPRAMAFLERIHSRSAYARALEKGGPYQVGR"
     gene            complement(479..1774)
                     /locus_tag="VE567_01130"
     CDS             complement(479..1774)
                     /locus_tag="VE567_01130"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYZ47475.1"
                     /translation="MATTDPSRPMEVAEIEDTSLLAFYRDMNLQERRTFWACAAGWAL
                     DGMDFMIYPLVIGTIIALWKVDAGTAGLAGTVTLLFSAVGGWLGGYLADRIGRVKTLQ
                     LTILWFSFFSLVCAFVQDFNQLLIARAILGLGFGGEWAAGAVLMGEAIRPQYRGRAVG
                     SVQSGWAVGWGLAVLAQAILFSVFPAETAWRWMFAVGALPALLVFYLRRHVREPEIAA
                     AARVKHAEEGHPPLWEIFSGPILKTTILASLVATGMQGGYYAITAWVPRFLTTERHLS
                     IVSSTGYLATLIIGSFVGYLVGAWLADRIGRRNLFLTFSLGAIAVVLLYTQVPLSNEW
                     LWVLGFPLGFFASGYFSGMGAFLTELYPTRLRGSGQGFCYNFGRGIGALFPFLVGALS
                     TTTTLANAIAIFAVAAYGVFFLAAFALPETRGKVLHAHG"
     gene            complement(1886..>2763)
                     /locus_tag="VE567_01135"
     CDS             complement(1886..>2763)
                     /locus_tag="VE567_01135"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF013206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HYZ47476.1"
                     /translation="VSMPLPSSGGTVLLETLNILEGFPMADLPQGSPASLHLMIEAMK
                     RAYADRARYLGDPAFVNAPTNILLSKDYAARQRAGIDPDRATPATETLASKPPREGAN
                     TTHFSVVDSRGNAVSNTYTLNFPYGVGLVADGTGVLLNNELDDFTAAPGASNAFGLVG
                     FEANLPGAGKRPLSSMSPTIVLKDGKPVLVTGTPGGSRIISAVVQIVVDVLDYNMDIA
                     AAVAAPRVHHQWMPDEVRVERGFPEETLAALRAKGHKVVEPLGQTSANSIFVTPNGLL
                     GAPDPRTRGAEAAGQ"
BASE COUNT          530 a          885 c          918 g          430 t
ORIGIN      
        1 aacacgccgg agcggctgcg ctacacctac tggatgcact atgccgaggg atcggcgatg
       61 ccgcctttgc tgctaaagct tctgttcacg ctgatgccga agcgggcgcc cgccttgctg
      121 cggccattgg tgcgaaaagt cgccaaccag gcgctgacga ccgtggtcat tccgcagctc
      181 aagcagcata tggcgttctg ggaagcggag ctcggcaaga gcgaatggtt cgcaggacac
      241 gaattttcag gcgccgatat ccagatgagc tttccgttgg aagcggccgc cgctcgcggc
      301 gggttggacg aaggccatcc gagagcgatg gcgttcctcg aacgcatcca ttcgcggtcc
      361 gcttatgcgc gggcgctgga gaagggcggg ccataccagg tggggaggta agtctcacaa
      421 agacgatggc caaggcggca ccgccgcgat cacttccttc acccattacg gccgcccgtc
      481 agccatgcgc atgcagcacc tttccgcggg tctcgggtag cgcaaacgcc gcaaggaaga
      541 acacgccata ggcggcgacc gcaaagatcg cgatcgcatt ggcaagcgtg gtcgtggtcg
      601 agagcgcgcc gaccaggaac gggaacaacg ctccgatacc gcggccaaaa ttgtagcaaa
      661 agccctggcc cgatccgcgc agccgcgtcg gataaagttc ggtgaggaac gcgcccatgc
      721 cggagaaata gccggacgcg aagaagccaa gcggaaagcc cagcacccac agccattcat
      781 tgctcagcgg cacctgcgta tagagcagca ccacggcgat ggcgccgagc gagaaggtca
      841 ggaacagatt ccgccgtccg atgcggtcgg cgagccaggc gccgacgaga tagccgacga
      901 acgagccgat gatcagcgtc gcgagatagc ccgtcgagga gacgatcgac aggtggcgtt
      961 ccgtcgtcag gaagcgtgga acccatgcag tgatcgcgta atagccaccc tgcatgccgg
     1021 ttgcgaccag cgacgccagg atcgtggtct tcaggatcgg accggagaaa atctcccaca
     1081 gcggcggatg accttcctcg gcgtgcttga cgcgggcggc cgccgcgatc tccggctccc
     1141 tgacgtggcg gcgcagatag aacacgagca gcgccggcag ggcgccgacc gcgaacatcc
     1201 agcgccacgc ggtctccgcg ggaaataccg agaacaggat cgcctgcgcc aacaccgcaa
     1261 gtccccagcc gaccgcccag ccggattgca ccgagcccac ggcgcgtccg cgatattgcg
     1321 gccggatcgc ttcgcccatc aggaccgcgc cggccgccca ctcgccgccg aagccaagtc
     1381 cgaggatcgc gcgggcgatg aggagctggt tgaaatcctg cacgaacgcg cagaccagcg
     1441 agaagaacga gaaccagagg atggtgagct gcagcgtctt cacccgcccg atgcggtcgg
     1501 cgagatagcc gccgagccaa ccgccgacgg cggagaataa cagcgtcacg gtgccggcca
     1561 accccgcggt gccggcatcg accttccaca gtgcgatgat ggtgccgatc accagcggat
     1621 agatcatgaa atccatgccg tcgagcgccc agcccgccgc gcaggcccag aacgtccgcc
     1681 gctcctgcag gttcatgtcg cggtagaagg cgagcaggct ggtgtcttcg atctcggcga
     1741 cttccatcgg tcttgacggg tcagtcgtgg ccatgggcag gtctcccgaa gttttttctt
     1801 gaccggcctc ttgttctcgc cgccggcgtg cggacagcct ttctactccg atgtcgtatg
     1861 tgggcaaagc cgctgttggg ccggttcatt gccccgccgc ttcggcgccg cgcgtgcgtg
     1921 gatcgggggc gccgagcagt ccattgggcg tcacgaagat cgagtttgcc gaggtctggc
     1981 cgagcggctc gaccaccttg tgacccttgg cgcgcagcgc cgcgagcgtc tcctccggaa
     2041 aaccgcgctc cacacggact tcgtccggca tccattgatg atgcacgcgc ggcgccgcca
     2101 cggcagcggc gatatccatg ttgtagtcca gcacgtcgac gacgatctgc acgaccgcgg
     2161 aaatgatgcg gctgccgccg ggcgtgccgg tcaccagcac cggcttgccg tccttcagca
     2221 cgatggtcgg cgacatcgag gacagcggcc gtttgcccgc gccgggcaaa ttggcttcga
     2281 acccgactag gccgaacgcg ttggaagcgc cgggtgccgc cgtgaaatcg tcgagctcgt
     2341 tgttgagcag cactccggtg ccgtcggcga ccagcccgac gccatagggg aaattcagcg
     2401 tgtaggtgtt gctgacggca ttgccgcggc tgtcgaccac tgaaaaatgc gtggtgttcg
     2461 cgccttcgcg cggcggcttc gaggcgagcg tctccgtcgc aggcgtggcg cgatcgggat
     2521 caatgccggc gcgctgcctg gcggcatagt ccttcgagag caggatgttg gtcggcgcgt
     2581 tgacgaaggc gggatcgccg agatagcggg cgcgatcggc ataggcgcgc ttcatcgcct
     2641 cgatcatcag gtgcagcgag gccggcgagc cctgcggcag atcggccatc ggaaatcctt
     2701 cgaggatatt cagcgtctcg agcagcacgg tgccgccgga cgagggcagc ggcatcgaga
     2761 cga
//
LOCUS       DASQVK010000051         2193 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_224634,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000051 DASQVK010000000
VERSION     DASQVK010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2193)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2193)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2193
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224634"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2193)
                     /locus_tag="VE567_01140"
     CDS             complement(<1..>2193)
                     /locus_tag="VE567_01140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47477.1"
                     /translation="GGPLLPRLVPSQRRARVAIADGTLRAFGFSKGGQFQLIAPDISF
                     GSDAPRDGATHIGLDFAVRQGFGSLDLTSNRTRFVSGLFDNGRANVSAFRETTSFRVR
                     AGETLSLSQTLLPLVTSRADVTALLTLPTGGALLDRLTPAIPGFAIDRRAIDLRIGGL
                     GELVVDAGAAIIGEAGATITAPKIINSGRIVLPGGTLRQEAAAPSADAATNGLGVRSL
                     AALLGAERGNSETAPNALGLTQNGRVLTNAELFTRDGADRLVFLLGEGDETDGIRLRA
                     GSVTDLSGTAIFDPRARFLQDPQTGQLRQERIGTLIGGGTIATASTLNDEGAAPLNLF
                     SRTLVAEAGATIDISGARATFDEFVPGKGFVASDQWSAGGRIAALGGGTIAGARINAY
                     GGYGEDGGAFLATGQIVAGAIEGRAQGGTLEWARPTVAAALPANAENVLLDSAIEASG
                     FDTLIARNGLRFDGAVDLTLGKALFVTAPVTRGGVLPVNTSYQISATAGTRARVNAPY
                     IAFVSRAGSSALGEGFADQVQGEKAEVQFEAGAQGIDLVGATLFGASIGKLEFRTDAD
                     IRFIGVDTRTDLQRQTAAGQGSLNGQIASFADMTFAAARTYATTGTGNLQAFVDAERT
                     TGKAPVSTAVATYAPYTVLALGNSTIRFEQTVSNLEAPLSAGSYVRVLATRIEQDGYL
                     AAPLGRLELGTAQAPAGIPTNISFTPTESVTFGAGSVTSVAGGTTSVPY"
BASE COUNT          350 a          737 c          760 g          346 t
ORIGIN      
        1 gtacggcacc gatgtggttc ctccggcaac ggatgtgacg ctgcctgcgc cgaaggtgac
       61 gctttccgtc ggcgtgaacg agatgttcgt cgggataccg gctggcgcct gcgccgtccc
      121 gagctccagc cggccaagcg gcgcggcgag atagccatcc tgctcgatcc tggtggcgag
      181 tacccggaca tagctgcccg cggacagcgg agcctcgaga ttgctgacgg tttgctcgaa
      241 acgaatcgtg ctgttgccca gcgccaggac ggtgtagggc gcgtaagtgg cgacggccgt
      301 cgagacgggg gccttgcccg tcgtccgctc cgcatcgaca aaggcctgca gattgcccgt
      361 ccccgtcgtc gcataggtgc gtgccgcggc gaaggtcatg tcggcaaagc tggcgatctg
      421 gccgttgagc gacccttggc cggcggcggt ctggcgctgc agatccgtgc gcgtgtccac
      481 gccgatgaag cgaatatcgg cgtcggtccg gaactccagc ttgccgatcg acgcaccgaa
      541 cagcgtcgcg ccgaccaggt caatcccctg cgccccggct tcgaactgga cttccgcctt
      601 ctccccttga acctgatcgg cgaagccttc gcccagggcg gagcttcctg cccggctgac
      661 aaaggcgata tagggcgcgt tcacgcgcgc ccgggtgccg gcggtggcgg agatctgata
      721 ggaggtgttg accgggagca cgccgccgcg cgtgacgggg gcggtgacga acagtgcctt
      781 gcccagcgtg aggtcgaccg ccccgtcgaa ccgcaatccg tttcgagcaa tcagcgtgtc
      841 gaagcccgac gcctcgatcg cgctgtcgag cagcacgttc tcggcattgg ccggcagcgc
      901 ggccgccacc gtgggccggg cccattccag cgtgccgccc tgagcgcggc cctcgatcgc
      961 ccccgcgacg atctggccgg tggccagaaa ggcgccgcca tcctcgccat aaccgccata
     1021 ggcgttgatg cgcgcgccgg cgatcgtgcc gccgcccagc gcagcgatac gtccgcccgc
     1081 actccactgg tccgatgcca caaagccctt gccgggcacg aattcgtcga acgtggcccg
     1141 cgcgccgctg atgtcgatcg tcgcccctgc ctcggcgacc aatgtgcgcg agaacaggtt
     1201 caatggggcc gcaccctcgt cgttaagggt cgaggccgtc gcgattgtgc cgcccccgat
     1261 cagggttccg atccgctcct gacgcagctg accggtttgc ggatcctgga ggaaacgtgc
     1321 gcgtgggtcg aaaatcgcag tgccggacaa gtcggtgacg ctgccggcgc gcaggcggat
     1381 gccgtcggtc tcgtcgcctt cgccaaggag gaaaaccagg cgatccgcgc catcccgcgt
     1441 gaacagttcg gcatttgtga gaacgcgtcc gttctgggtc aaaccgagcg cgttcggggc
     1501 cgtttcgctg ttgccgcgct ctgcgccgag cagggccgcc agcgaacgca cccccagccc
     1561 gttggtggcg gcatcggcgc ttggcgcggc tgcttcctgg cgcaaagtgc cgccgggaag
     1621 cactatcctg ccggaattga tgatcttggg cgccgtgatc gtggcgcccg cttcgccgat
     1681 aatggcggct ccggcgtcga cgaccagctc cccaagcccg ccgatgcgca ggtcgatggc
     1741 gcggcggtcg atcgcaaagc cgggaatggc cggcgtcagc cggtccagca atgcgccgcc
     1801 ggtcgggagc gtcagaagcg ccgtgacatc ggccctggag gtgacgagcg gaagcagcgt
     1861 ctggctaagc gacaatgttt cgccggcgcg gacgcggaag ctcgtcgtct cgcggaaagc
     1921 gctgacattc gcgcggccat tgtcgaacag acccgagacg aaccgggtgc ggttgctggt
     1981 caggtcgagg ctgccaaagc cctgccgcac ggcgaagtcc aggccgatat gggtagcacc
     2041 gtcgcgtggc gcatcggagc cgaagctgat gtcgggcgcg atcagctgga actgcccgcc
     2101 cttggagaag ccgaaggcgc gcaacgtgcc atcggcgatc gcaacccggg cgcgacgttg
     2161 ggacgggacc aggcgcggca gcaatggccc gcc
//
LOCUS       DASQVK010000052         3740 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_3310, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000052 DASQVK010000000
VERSION     DASQVK010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3740)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3740)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3740
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3310"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..862)
                     /locus_tag="VE567_01145"
     CDS             complement(<1..862)
                     /locus_tag="VE567_01145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47478.1"
                     /translation="MRLNAALIALAVSACSGPAEKAQSATPPVSPKPMLIGVSTHFGQ
                     GWPERYWTTLGSVPAPLVRDSVSWKSIETIPGQYSFTGATVGHVRRLCATGHRAVLVL
                     LPKHPAYDGNFTVYSLAGRTAFGSYVAALAREFGTCLAGVQIGNEINGPGNVTGPAAT
                     DRPASYTAILQAVHAALANMSPRPLILGGSTNTIGTGFLEQVFKAGALDYMDAVVVHP
                     YRKDPANVDWELGLLREAMARHGAVKPIWANEFSIDTTDTVAAADYLAKMLVQLSAAG
                     VEAGFWYALVD"
     gene            complement(853..1917)
                     /locus_tag="VE567_01150"
     CDS             complement(853..1917)
                     /locus_tag="VE567_01150"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008069821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYZ47479.1"
                     /translation="MHYWLVGMRGGERVLERLLHLFPQADIFTHVYMPEAVSDTIRAR
                     PVHTSFIQKLPGARRHYQKYLPLMPLALEQLDMRGYDLVISSESGPAKGVIAAPDALH
                     LCYCHSPMRYLWDHYHHYRATAGRVARMLMPPLFHYLRQWDVSSAARVDGFVANSRFI
                     QRRIRRAWNREARVVHPPVAVDSFRPIEDVGPAYLWVGQMIAYKRPDLALETFNRLGL
                     PLLMVGDGDMAAELRRRAGPNISFRERLSFAELQRAYASARALVFTAEEDFGIVPVEA
                     NASGRPAIVLGRGGTLDSIVPDETGIFFEEQTIDALTDAVERLEAWLPDFNPAMAVRQ
                     AQRFRPERFDEGFREVLACA"
     gene            complement(1972..>3740)
                     /locus_tag="VE567_01155"
     CDS             complement(1972..>3740)
                     /locus_tag="VE567_01155"
                     /inference="COORDINATES: protein motif:HMM:NF013793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYZ47480.1"
                     /translation="PGFVEQLGQVLPARRREAAISLLHRNLDARRIGTSYALRISYSD
                     PDPDRAARIANGYASAYTQNQVQTKVQTNQTAIGVLRSRMEELRTQAQSDFRALQNYR
                     ISNGLETKSGTALTEQEVSAYSQQVATARSDAARDQARLAQAREQLRRGEISDGGALS
                     ALRAQRAQLSVKLAELSQRYLDTHPEVVAARSQVEDIDRQIQAEAARSVASVEAAATA
                     SQQRLASLEASLGGASRRLATNNSALVVMDDLERRAQASQELYESYLNRYKEAVARSG
                     AEQPNADVLSAAVPPPAPSSPILLLNLVLGVLVGILLGVAAAIAAEQSYSGLTTGEEV
                     ERRLGVPAIGSLPLLKSLGIKSGTPLETVQREPGGAFAESIRSVLAAVRQANSGRGQV
                     VMITSALPKEGKTTLSACLAQAAATANDRVVLIDCDTVRSSLSAALVVDKSGPGLKEI
                     LDESAPVEAALQPFGDTGALLPIRTRFKTGERLLEQGRLQRLVASLRERFDLIVLDCA
                     PLLPIAETREIASLADAILVTVRWRNTGDGAIRAALKMVPPQKIARLGVVLNMVDMRK
                     RARFGEGDPAAYFRRYRHYYTS"
BASE COUNT          635 a         1228 c         1247 g          630 t
ORIGIN      
        1 ggtccacgag cgcgtaccag aaaccggcct ctacccccgc cgcgctcagc tggaccagca
       61 tcttggccag gtaatcggcg gccgcgaccg tgtcggtcgt gtcgatgctg aattcgttgg
      121 cccagattgg cttgaccgcg ccgtgtcggg ccattgcctc acgcagcagc cccagctccc
      181 aatcgacatt ggccgggtcc ttgcgatacg gatgcacgac caccgcatcc atatagtcga
      241 gcgccccggc cttgaagacc tgttccagaa agcccgtgcc gatcgtattg gtcgagccgc
      301 cgaggatcag cgggcgcggc gacatgttcg cgagcgccgc atgcactgcc tgcaggatag
      361 ccgtgtagct ggccgggcga tcggtggccg cggggccggt cacattgccc gggccgttga
      421 tctcgttgcc gatctgaacg cccgccaggc acgtcccgaa ctcgcgcgca agcgccgcga
      481 catagctgcc aaaggccgtg cgccccgcaa gactataaac agtgaagttg ccgtcatagg
      541 cagggtgttt gggaagcagc accaggaccg cacgatgccc ggttgcgcac aaccggcgta
      601 catggccaac ggtggcgccg gtaaagctgt attggccggg tatcgtctcg atcgacttcc
      661 agctgacgct gtcgcggacc agcggggcgg gcacgcttcc cagtgtcgtc caatagcgtt
      721 cgggccagcc ttgcccgaaa tgggtggaga ctccgatcag catcggcttt ggcgacacgg
      781 ggggcgtcgc gctctgcgcc ttctccgcag ggccggagca ggcggaaacc gcaagcgcga
      841 tcaacgcggc attcaggcgc acgccagcac ctcgcggaac ccctcgtcga accgctccgg
      901 gcgaaagcgc tgcgcctggc gaaccgccat tgcaggattg aaatcgggga gccacgcttc
      961 aagtcgctcg accgcatcgg tcagcgcatc gattgtctgc tcttcgaaga aaatgccggt
     1021 ctcgtccggc acgattgagt cgagcgttcc cccgcggccg agcacgatcg cgggcctgcc
     1081 acttgcattc gcttcgaccg gcacgatccc gaaatcctcc tcggcggtaa acacgagcgc
     1141 ccgcgcgcta gcgtaggcgc gttgcaattc ggcgaaactc aatcgctcgc ggaacgaaat
     1201 attgggtccg gcccggcggc gcagctcggc cgccatgtcg ccgtcgccga ccatgagcaa
     1261 cggtagccca aggcggttga acgtctccag tgccaggtcg gggcgcttat aggcaatcat
     1321 ctgcccgacc cacagatagg cgggcccgac gtcttcgatc gggcgaaagg aatcgaccgc
     1381 caccggcgga tgcaccaccc gcgcctcgcg attccaggcg cggcgaatac ggcgctgaat
     1441 gaagcgcgaa ttggcgacaa acccgtcgac gcgggctgcc gagcttacat cccattgccg
     1501 gagatagtgg aacagcggcg gcatcagcat tcgggccacc cggcctgccg ttgcgcgata
     1561 gtggtgatag tgatcccaca gatagcgcat cggcgagtgg cagtagcaga ggtgcagggc
     1621 gtccggcgcg gcgatcacgc ccttggctgg cccggattcg ctggagatca ccagatcata
     1681 gccgcgcata tccagctgct cgagcgcaag cggcatcagc ggcaggtatt tctgatagtg
     1741 ccgccgcgcg ccgggcagct tctgaatgaa gctggtgtgg acggggcgcg cacggatcgt
     1801 atccgacacg gcctccggca tgtagacgtg cgtgaagatg tcggcttgcg ggaagaggtg
     1861 cagcagccgt tcgagcaccc gctcgccgcc gcgcatgccg acgagccagt agtgcacgat
     1921 cgctactcgc ctgaaccgcg ccgccatttc ttttcccccc aaatcaaacg gctagctggt
     1981 gtagtaatgg cggtagcgcc ggaaatatgc cgccggatcg ccttcgccga accgggcccg
     2041 cttgcgcatg tccaccatgt tgagcacgac gcccagccgg gcgatctttt gcggcgggac
     2101 catcttcagc gcggcccgga tcgcaccgtc tccggtattg cgccagcgca cggtcaccag
     2161 gattgcgtcg gcgagcgaag cgatctcacg ggtttcggcg atcggcagca atggcgcgca
     2221 atcaagcacg atcaggtcga agcgctcgcg cagcgaagcg acaagccgct gcaggcgccc
     2281 ttgctccaat agtcgctcgc ccgtcttgaa gcgcgtccgg atcgggagca gcgcgccggt
     2341 atcgccgaag ggctgcagcg ccgcctcgac cggcgcgctc tcgtccaata tttccttgag
     2401 ccccggaccc gatttatcca ccaccagcgc ggcgctgagc gagctgcgca cggtgtcgca
     2461 gtcgatcagc acgacgcggt cattcgctgt cgctgcggct tgggcgaggc aggcggagag
     2521 cgtggtcttg ccttccttgg gcaatgcaga cgtgatcatg acgacctgcc cgcggccgct
     2581 gttcgcctgg cgcacggcgg cgagcacgga gcggatcgat tcggcaaagg cgccgccggg
     2641 ctcccgctgc accgtctcaa gcggggtgcc ggatttgatg ccgagcgact tgaggagcgg
     2701 cagcgagccg atcgcgggca cgcccaggcg gcgttcgacc tcctcgccgg ttgtgaggcc
     2761 ggaatagctc tgctcggccg cgatcgcggc ggcaacgcca agcagaatcc cgaccagcac
     2821 cccaagcacg aggttgagaa gcaggatggg gctgctgggc gccggtggcg gcacggcagc
     2881 cgagagcacg tcggcgttgg gctgttcggc gccggaccgt gcgacggctt ccttgtaacg
     2941 gttgagatag ctttcgtaga gttcttgcga agcctgggcc cgccgctcca ggtcatccat
     3001 gaccacgagc gcgctgttgt tcgtggcaag ccgccggctc gcaccgccaa ggctggcctc
     3061 cagcgaagcc aggcgctgct gggaggcggt cgcagccgct tcgacggagg cgacggatcg
     3121 ggccgcctct gcctggatct ggcggtcgat gtcttcgacc tgggatcgtg ccgcaaccac
     3181 ttcagggtgc gtgtcgaggt agcgctgcga cagctcggca agcttgacgc tcagctgggc
     3241 gcgttgggcg cgcagtgcgc tcaaggcccc gccatcgctg atctcgcccc ggcggagctg
     3301 ttcccgcgcc tgggccagcc gcgcctggtc gcgcgcggca tctgatcgcg cggtggccac
     3361 ctgctgacta taggcggaga cttcctgctc ggtcagcgcg gtgccggact tggtctcgag
     3421 cccattgctg atccgataat tctgaagtgc ccggaaatcc gactgcgcct gcgtgcgcag
     3481 ctcttccatc cggctgcgga gcacgccgat tgcggtctga ttggtctgga ccttcgtctg
     3541 gacctgattc tgggtgtagg cgctggcata gccgttcgcg atgcgcgccg cgcgatcggg
     3601 atcgggatcg gaatagctga tcctcagtgc gtaggaagtg ccaatacgtc gcgcgtcgag
     3661 gttgcggtga agcagcgaga tcgccgcttc gcgcctgcgg gcggggagca cctgccccag
     3721 ctgctccaca aaacccgggt
//
LOCUS       DASQVK010000053         2619 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_288030,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000053 DASQVK010000000
VERSION     DASQVK010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2619
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288030"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..444
                     /locus_tag="VE567_01160"
     CDS             <1..444
                     /locus_tag="VE567_01160"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010338101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HYZ47481.1"
                     /translation="MLAILVLPLMYLGWTAIAVVYPTAVASMANAGPHGFSELLYAFT
                     SQTANNGSAFAGLSGNIPFYNITGGVSMFVGRFFMIVPAMAIAGALAEKKSIPPSMGT
                     FPTTGGLFVGLVVGVILIIGGLTFFPALALGPIVEQIAMNAGTLY"
     gene            469..2583
                     /gene="kdpB"
                     /locus_tag="VE567_01165"
     CDS             469..2583
                     /gene="kdpB"
                     /locus_tag="VE567_01165"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003047296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HYZ47482.1"
                     /translation="METMKLQKKVTASTMLDPNILVPAITSAFVKLDPRLMMKNPVMF
                     VVEVVAALTTVIFLRDLAAGGEHLGFTFQIILWLWFTVLFANFAEAVAEGRGKAQAES
                     LKKTRTESQAKLLTGSDKTYRLVPGTALKVGDIVLVEAGDNIPSDGEVIEGVASVNEA
                     AITGESAPVIRESGGDRSAVTGGTQVLSDWIRVRITAAQGSTFIDRMIRLVEGAERQK
                     TPNEIALNILLAGLTIIFVFATVTIPSYAAYAGGSISVVVLVALFVTLIPTTIGALLS
                     AIGIAGMDRLVRFNVLAMSGRAVEAAGDVDTLLLDKTGTITLGNRQATEFRPVRGVSE
                     QELADAAQLASLADETPEGRSIVVLAKEKYGIRGRDMHELHATFVPFTAQTRMSGIDA
                     GSSAVRKGAVDAILNYIGGGTAQSIASGNAVRALQPTVNSDAARELQAIADEIAKEGG
                     TPLAVAKDGRLLGVIHLKDIIKGGIRERFAELRRMGIRTVMITGDNPMTAAAIAAEAG
                     VDDFLAQATPEDKLKLIRDEQAKGKLVAMCGDGTNDAPALAQADVGVAMNTGTQAARE
                     AGNMVDLDSNPTKLIEVVEIGKQLLMTRGALTTFSIANDVAKYFAIIPAMFLAFYPQL
                     GLLNVMHLTSPQSAILSAIIFNALIIIALIPLSLKGVAYRPIGAGPLLRRNLLIYGLG
                     GLVAPFIGIKLIDMLVSATGLA"
BASE COUNT          456 a          881 c          818 g          464 t
ORIGIN      
        1 atgctcgcca tcctggtgct gccgctgatg tatctgggct ggacggcgat tgccgtggtt
       61 tatccgacgg cggtggcctc aatggccaat gccggtccgc acggtttctc ggaattgctg
      121 tacgccttta cgtcgcagac cgccaacaac ggttcggcct ttgccggcct tagcggcaac
      181 attcccttct acaacatcac cggcggtgtc tccatgttcg tcggccgctt cttcatgatc
      241 gttccggcga tggcgatcgc gggcgcgctc gccgaaaaga agtcaatccc gccgtcgatg
      301 ggcactttcc cgaccacggg cggactgttc gtcgggctgg tcgtcggcgt gatcctgatc
      361 atcggcggcc tgaccttctt cccggcgctg gcgctggggc cgatcgttga gcaaatcgcg
      421 atgaacgcag gcaccctgta ctgatcgatc cctttcggag ttacatccat ggaaaccatg
      481 aaactgcaga agaaggtgac ggcgtcgacc atgctcgacc cgaacatcct ggtgcccgcc
      541 atcacctcgg cattcgtcaa gctcgacccg cggctgatga tgaaaaaccc cgtgatgttc
      601 gtggtcgagg tcgtcgccgc attgaccacc gtcatcttcc tgcgcgacct tgccgccggc
      661 ggcgaacatc tcggattcac cttccagatc atcctgtggc tctggttcac ggtgctgttc
      721 gccaattttg ccgaagccgt cgccgaaggc cgcggcaagg cgcaggcgga atcgctgaag
      781 aagacccgca ccgagagcca ggccaaattg ctgacgggct cggacaagac ctatcgcctg
      841 gtccctggca ccgcgctcaa ggtcggcgat atcgtgctgg tcgaagccgg cgacaatatt
      901 ccgtcggatg gtgaggtgat cgagggcgtc gcctccgtga acgaggccgc gattaccggt
      961 gaatccgcgc ccgtgatccg cgagtccggc ggcgaccgct cggcggtgac cggcggcacc
     1021 caggtgctgt ccgactggat ccgcgtccgc atcaccgcgg cgcagggctc gaccttcatc
     1081 gaccgcatga tcaggctggt cgaaggcgcc gagcggcaga agacgccgaa cgagatcgcg
     1141 ctgaatatcc tgctcgccgg ccttaccatc atcttcgtgt tcgcgaccgt gacaatcccg
     1201 agctacgcgg cctatgccgg cggctcgatc tcggtcgtgg tgctggtggc gctgttcgtg
     1261 acgctgatcc cgaccacgat cggcgcgctg ttgtcggcga tcggcatcgc cggcatggac
     1321 cgcctggtgc gcttcaacgt gctggcgatg tccggccggg cggtcgaggc cgccggcgac
     1381 gtcgacacgc tgctactcga caagaccggc accatcacgc tcggcaaccg gcaggcgacc
     1441 gagttccgtc cggtgcgcgg cgtcagcgag caggagcttg ctgacgcagc gcagctggcc
     1501 tcgctggccg acgaaacgcc ggaaggccgc tcgatcgtcg tgctggcgaa ggagaaatac
     1561 ggcatccgcg gccgcgacat gcatgaactc catgcgacct tcgttccctt caccgcccag
     1621 acccgcatga gcggcatcga cgcgggatct tccgccgtcc gcaagggcgc ggtggatgcg
     1681 attctcaact atatcggcgg cggaacggcc caatccattg ccagcggcaa cgcggttcgc
     1741 gcactgcagc cgaccgtcaa cagcgacgcg gcgcgcgaac tccaggccat cgccgacgag
     1801 atcgccaagg agggcggcac gccgcttgcc gtggcaaagg acggccgtct gctcggtgtc
     1861 atccacctga aggacatcat caagggcggc atccgcgagc gctttgccga actgcgccgc
     1921 atgggcatcc gcaccgtgat gatcaccggc gacaatccga tgacggcggc ggcgattgcc
     1981 gcggaggccg gcgtcgacga tttcctggcg caggcgacgc ccgaggacaa gctgaagctg
     2041 attcgtgacg agcaggccaa gggcaaattg gtggcgatgt gcggcgacgg caccaacgac
     2101 gcgccggcgc tcgcgcaggc cgacgtcggc gtcgccatga acaccggcac ccaggctgcg
     2161 cgcgaagccg gcaacatggt cgacctcgac tccaacccga ccaagctgat cgaggtggtc
     2221 gagatcggca agcaactgct gatgacccgc ggcgcgctga cgacgttctc gatcgccaac
     2281 gacgtcgcca aatactttgc catcatcccg gcgatgtttt tggcgttcta tccgcagctc
     2341 gggctgctca atgtcatgca cctcaccagc ccgcaaagcg cgatcctgtc ggcgatcatc
     2401 ttcaacgcgc tgatcatcat tgcgctgatt ccgctgtcgc tgaagggcgt cgcctatcgt
     2461 ccgatcggcg ccggcccgct gctccgccgc aacctgctga tctacggcct cggcgggctg
     2521 gtagcgccat tcatcgggat caagctgatc gacatgctgg tctccgccac gggcctcgcc
     2581 tgaaccacgc tcccgccaaa cccccttccg cgccggaag
//
LOCUS       DASQVK010000054         2145 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_66537, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000054 DASQVK010000000
VERSION     DASQVK010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2145
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66537"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..221
                     /locus_tag="VE567_01170"
     CDS             <1..221
                     /locus_tag="VE567_01170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010337522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HYZ47483.1"
                     /translation="LAKGAGLGPIVGLNDAQVDACLSDDAQEKAVLAMTDEAWNKRSI
                     PGTPYFLVNGAGVENTATWEALEPRLNK"
     gene            235..969
                     /locus_tag="VE567_01175"
     CDS             235..969
                     /locus_tag="VE567_01175"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HYZ47484.1"
                     /translation="MTKAHLLALGAVALALAGCDKGADNAAAPAKISGPIAPPAGQDW
                     RNMVSRTADGFVMGNPNAPVKLVEYGSRSCPHCAKFDEEGAPQLRDKYVASGRVSYEF
                     RDYAIHGPIDVPAIILGRCGDPSTYFPMLDQMMRNQNNFLSKASSLDQAKLTPIQNDP
                     VKLASVLAEQLGYLDFVRQRGVSESAARACLADKSAYDAMVKTMQKANALPDFVGTPT
                     FLINDQKLDNVGTWEQLEPKLKEAGA"
     gene            1092..>2145
                     /locus_tag="VE567_01180"
     CDS             1092..>2145
                     /locus_tag="VE567_01180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013038753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYZ47485.1"
                     /translation="MRFKRLKLTGFKSFVDPTELRIEPGLTGVVGPNGCGKSNLLEAL
                     RWVMGEGSAKSLRGGAMEDVIFAGTASRAARDFAEVQLFAETGDNDDGEIEVVRRIER
                     GAGSAYRLNGRDVRAKDVALLFADAATGAHSPALVSQGRIGAVIAAKPVERRAMLEEA
                     AGIAGLHVRRKDAEQKLRATEANLTRLGELIGDMETRSGQLKRQARAAERYRAISAEI
                     KMAEARLIFARWREAAQAADAAKKEAVAAEERVAQLAEAQRAAAAWNAEATRLLGDAR
                     AAAQAARDRAAEIAHKLATARAELASAERRLAELAQARERLAGDREREGALANDAAEA
                     IARLAAEARALDVRVAQ"
BASE COUNT          390 a          710 c          729 g          316 t
ORIGIN      
        1 tgctcgccaa aggcgcgggg ctgggcccga tcgtcggctt gaatgacgcc caggtcgatg
       61 cctgcctgtc cgacgacgcg caggaaaagg cggtgctggc gatgaccgac gaggcctgga
      121 acaagcgctc gatccccggc accccctatt tcctcgtgaa cggcgccggc gtcgagaata
      181 cggccacctg ggaagcgctg gagccgcgcc tcaacaagta agacggagac gggaatgacc
      241 aaagctcatc tgctggcgct tggcgccgtg gcgctggcgc tcgcaggctg cgacaagggc
      301 gcggacaatg ctgccgcgcc ggccaagata tcgggcccga ttgcgcctcc cgccggacag
      361 gattggcgga atatggtttc gcgcaccgcc gacgggttcg tgatgggcaa tccgaacgcg
      421 cccgtcaaac tcgtcgaata tggctcgcgg agctgcccgc actgcgcaaa attcgatgaa
      481 gaaggcgcgc cgcagcttcg cgacaaatat gtcgccagtg gacgcgtgag ctacgagttt
      541 cgggactatg ccatccacgg ccccatcgac gtccctgcca taatcctggg ccgctgcggc
      601 gatccttcga cctattttcc gatgctcgac cagatgatgc gcaatcagaa caattttctg
      661 agcaaggcga gcagcctgga ccaggccaag ctcacgccga tccagaacga tccggtcaag
      721 ctggcgagcg tgcttgccga gcagcttggc tatctggatt ttgtccgcca gcgcggcgtt
      781 tcggaatccg ccgcgcgcgc atgcctcgcg gacaagtcgg cctatgacgc gatggtgaag
      841 accatgcaaa aggcgaacgc actcccggat ttcgtcggca cgccgacgtt tctgatcaac
      901 gatcagaagc tcgacaatgt cggcacctgg gaacaactcg agcccaagct taaggaggcg
      961 ggcgcttagt cccatccaca actggactcg tttgcacacc tgtccgccta aatcttgggg
     1021 ataagggtgc gccccggcct ttcgccctca tgcgcgcgcg ataagctctt gcgcaggagg
     1081 aggcagcagc gttgcggttc aagcgactga agctcaccgg cttcaagagc ttcgtcgatc
     1141 cgaccgagct gcggatcgag ccggggctga ccggcgtcgt cggacccaat ggctgcggca
     1201 aatcgaacct gctcgaagcc ctgcggtggg tgatgggcga aggcagcgcc aagtcgctgc
     1261 gcggcggcgc tatggaagat gtgatcttcg ccggcaccgc cagccgcgcc gcgcgcgact
     1321 tcgccgaagt ccagcttttc gccgagaccg gcgacaatga cgacggtgag atcgaggtag
     1381 tccgccggat cgagcgcggg gccgggtcgg cctatcggct gaacggccgc gacgtccgcg
     1441 ccaaggacgt cgccttgctc ttcgccgacg ctgccaccgg cgctcattcg cccgcgctcg
     1501 tcagccaggg ccgaatcggc gcggtgatcg ccgccaagcc ggtcgagcgg cgggcgatgc
     1561 tggaggaagc ggcgggaatc gccggcctcc atgtccgccg caaggatgcc gagcagaaat
     1621 tgcgcgcgac cgaggccaat ctcacgcggt tgggcgagct gatcggcgac atggaaacgc
     1681 gctcgggcca gctgaagcgc caggcgcgcg cggcggagcg ctaccgggcc atctcggccg
     1741 aaatcaagat ggccgaggcg cggctgatct tcgcccgctg gcgcgaggcc gcccaggccg
     1801 ccgatgccgc gaagaaggaa gccgtcgccg ccgaagagcg cgtcgcgcag ctcgccgagg
     1861 ctcagcgcgc ggcggctgcc tggaatgcgg aggcgactcg cctgctcggt gacgctcgcg
     1921 ccgccgctca agccgcacgc gaccgggccg ccgagatcgc ccacaagctc gccacggccc
     1981 gcgcggagct ggcgagcgcc gaacggcggc tggccgaact tgctcaggcg cgcgagcggc
     2041 tcgccggcga ccgcgaacgc gaaggtgcgc tcgccaatga tgccgcggaa gcgattgcgc
     2101 gcctcgcggc cgaggccagg gcgctcgacg tgcgcgttgc acaag
//
LOCUS       DASQVK010000055         4609 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_3392, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000055 DASQVK010000000
VERSION     DASQVK010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4609
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3392"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1709)
                     /gene="mutS"
                     /locus_tag="VE567_01185"
     CDS             complement(<1..1709)
                     /gene="mutS"
                     /locus_tag="VE567_01185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HYZ47486.1"
                     /translation="MNSAPTPMMAQYLRLKAEAGDCLLFYRMGDFFELFFDDAKAAAA
                     ALDIALTARGEHGGAPIPMCGVPAHAAESYLARLIKAGFRVAIAEQTESPAEAKARGS
                     KALVDRAIVRFVTAGTLTEETLLDARRSNWLVALAEIGGMLGLAAADISTGAFEIAEI
                     APELLDAELAHYAAAEVIAPDGWPRAEAIERPRAGFDSAAAERRLCELFGVATLDGLG
                     SFGRAGVSAAGGLVVYLEHVGKGALPFLQRPRPRSIAEHMLIDAATRESLELTQAQGG
                     GRAGSLLDCIDRTVTGAGARLLAADLGTPLTDRAKIEARLDLVALFHDDGLRHATRAA
                     LRAMPDIGRALGRLVAKRGGPRDLAQLRDGLIEARSLRDRLVRVEAPPVLLARLLPAL
                     EGHAAFTDLLVRALIPNPPLDASQGGYIAEGYDAALDELRGLGGEGRRAIAALEARFR
                     DQTGIAALKIRHNGVLGYHVEVPARAADRLMAPDSGFTHRQTLAGAVRFNAPELHEQA
                     MRVTQAGAHALAAEAAHLEDLTERALTRRDAIAAAADAIARLDVAAALAERAVEGGWC
                     RPGL"
     gene            1788..2840
                     /locus_tag="VE567_01190"
     CDS             1788..2840
                     /locus_tag="VE567_01190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020817734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III polyketide synthase"
                     /protein_id="HYZ47487.1"
                     /translation="MHVAQAFINAIGTAVPDHDIHGAFIGWALGKIPEPRERKLFERM
                     VARSGIEHRWSVLPRADDGGDPTHPGGFYHGDALPSTGTRMRLYGEAAPALALQAIAG
                     LDFDPAEISHIVVASCTGFVAPGVDQIIARRLGLSPSVERLLVGYMGCYAAVIALRSA
                     RHIVRSDPSARVLVVTVEICSLHLHEMHQVEALLAGLQFGDGAAAALVTSDEQGIEIE
                     MPFATTLPESHDLIRWDITDEGFAMHLSGEVPGRIAAALAEPELRETIVNGGVDQWAV
                     HAGGRSILDAVENSLQLPPDSLVDSRIVLRDYGNMSSSTLMFVLARQLGRPIERGAAI
                     AFGPGLAAEGFRFRSA"
     gene            2837..3523
                     /locus_tag="VE567_01195"
     CDS             2837..3523
                     /locus_tag="VE567_01195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYZ47488.1"
                     /translation="MTSLAHRAIAEEQMDAEDLSAADYAAVIGDLAKANRWTLAARPT
                     LSFVARATNGRPFRLLDVGFGHGDMLRTVARWAARRGQSCELVGVDLNPRSEPTARAA
                     TPPDLPIRYVTGDYADLAGEPWDLIVSSLVAHHMTHAQLIAFLRFMDAHARMGWLVND
                     LHRHGLAHFGFPILATLMGWHRMVREDGKLSIARAYRPAEWPPILAEAGVSARVYRAF
                     PYRLCVEKIC"
     gene            3502..4575
                     /locus_tag="VE567_01200"
     CDS             3502..4575
                     /locus_tag="VE567_01200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HYZ47489.1"
                     /translation="MRREDLLILGGGPAGSAAAIGLARAGRRPLLLERQRETGDALCG
                     GFLSWHSLAALDQLGLEKLRGATVERVRLFAPAGSASAPLPRPALGVSRRHLDSALLA
                     HAEALGARIERGVLAREIEGRSVRTDGDRFEPEHLLLATGKHDVRGCGRPRPDGDPAL
                     GLRVRLGPAPALTRLIEGAIELHLFDRGYAGLVCQEDGAANLCLAVRKSRLAEAGGPR
                     ALIAAIGRELPALGERFAWLADEAEIDAIASIPYGWRATGTEAGVYRLGDQAGVIPSL
                     AGEGMGIALASGAAAAAAVLAGEDAKHFQQALAARIRRPIAVASGVWRLAERPPGGAL
                     LVRLMRLAPGLATLIARATRVGH"
BASE COUNT          665 a         1603 c         1611 g          730 t
ORIGIN      
        1 agcccgggcc ggcaccagcc gccttcgacc gcgcgctcgg caagcgcggc ggcgacgtcc
       61 agccgcgcaa ttgcatcggc ggccgcggcg atcgcgtcgc gccgggtgag cgcccgttcg
      121 gtcaaatcct cgagatgcgc agcttcggcg gcgagggcat gagctccggc ctgagtgacg
      181 cgcatcgcct gctcgtgcag ctcgggcgca ttgaaccgaa ccgcgccggc aagggtctga
      241 cggtgcgtga aacctgaatc gggcgccatc aacctgtcgg ccgcccgcgc cggcacttcg
      301 acatgatagc cgagcacgcc attatggcgg atcttgagcg cggcaatgcc ggtctggtcg
      361 cggaagcgcg cctccagtgc cgcaatcgca cggcggccct cgccgcccag gccgcgcaac
      421 tcgtcgaggg cggcatcata gccttccgca atatagccgc cctgcgatgc gtcgagcggc
      481 ggattcggaa tcagcgcgcg gacgagcaga tcggtgaagg cggcatggcc ttcgagcgcg
      541 ggcagcaatc gcgcaagcaa tacaggcggc gcctcgaccc gcacgagccg gtcgcgaagg
      601 ctacgcgctt cgatcaatcc gtcccgaagc tgggcgagat cgcgcggtcc gccccgtttg
      661 gcgaccagcc ggccgagtgc tcggccgata tcgggcatcg cccgcagcgc cgcgcgcgtt
      721 gcatggcgaa gcccatcgtc gtgaaagagc gccacgagat cgagtcgagc ctctatcttc
      781 gcccggtcgg tcagcggcgt gccgagatcg gcggcgagca gccgcgcccc cgcgccggtg
      841 acggtccggt cgatacagtc gagcaggctc ccggcgcggc cgccgccctg ggcttgggtc
      901 agctccaggc tttcccgcgt cgccgcgtcg atcagcatat gctccgcgat cgagcgaggg
      961 cgggggcgct ggaggaacgg cagcgctccc ttgccgacat gctcgagata gacgacgagc
     1021 ccgcccgcag ccgagactcc ggcgcggccg aagctgccca gcccgtccag ggttgcgacg
     1081 ccaaacagct cgcacagccg ccgttcggca gcggcgctgt cgaagcccgc ccgcggccgc
     1141 tcgatcgcct cggcgcgcgg ccagccgtcg ggcgcgatca cttcggcggc ggcataatgg
     1201 gcaagctcgg catcgagcag ctcgggcgcg atctcggcaa tctcgaaggc gccggtcgag
     1261 atatcggccg ccgccaaccc gagcatgccg ccgatctcgg ccagtgcgac cagccagttg
     1321 gagcgacgcg cgtcgagcaa tgtctcttcg gtcagcgtgc cggccgttac gaagcgcacg
     1381 atcgcacggt cgaccagcgc tttcgatccg cgcgctttcg cttcggcagg agactcggtc
     1441 tgttcggcaa tggcgacgcg gaatcccgcc ttgatcagcc gcgccagata ggattcggcc
     1501 gcgtgcgccg gcactccgca catcggaatg ggtgcgccgc catgctcgcc gcgcgcggtg
     1561 agcgcgatgt cgagcgccgc cgccgctgcc ttcgcgtcgt cgaagaacag ctcgaaaaaa
     1621 tcgcccatcc ggtagaagag caggcaatcg ccggcttccg ccttgaggcg cagatattgc
     1681 gccatcatcg gcgttggggc gctgttcatc ttccccggat tagcgtttgg agggcggctt
     1741 tccaacgggc gcgtgatcga tcagagacca ttgtccacag ctaaggaatc catgtggccc
     1801 aggcgttcat caatgcaatc gggaccgcgg ttccagacca tgacatccac ggggccttta
     1861 tcggctgggc gctcggcaaa atcccggagc cgcgcgagcg caagctgttc gaacgcatgg
     1921 tcgcgcgaag cggaatcgag catcgctggt cggtgctgcc gcgcgccgac gatggcggcg
     1981 acccgacgca cccgggcggt ttctatcatg gcgatgcgct gcccagcaca ggcacacgga
     2041 tgcgcctcta tggcgaagcc gcgccggcgc tggccctgca ggcgattgcc gggctcgatt
     2101 tcgatccggc cgagatcagc cacatcgtcg ttgcgagctg caccggcttc gttgcgccgg
     2161 gcgtcgacca gatcatcgcg cgccggctgg gactcagccc ctcggtcgag cggctgctgg
     2221 tcggctatat gggctgttat gccgcggtga tcgcgctccg gtccgcccgc cacatcgtcc
     2281 gctccgaccc gagcgcccgc gtgctggtgg tgacggtgga gatctgttcg ctgcacctgc
     2341 acgaaatgca ccaggtcgag gcgctgctcg cgggcctgca attcggcgac ggcgcggctg
     2401 cggcgctggt gaccagcgat gagcagggca tcgaaatcga aatgccgttc gcaaccacgc
     2461 tgccggaatc gcacgacctg attcgctggg acatcactga cgagggcttc gcaatgcatt
     2521 tgtctgggga agtccccggc cgcatcgccg cggcgctggc ggagccggaa ctgcgcgaga
     2581 cgatcgtcaa tggcggcgtc gaccaatggg cagtgcatgc cggcgggcgc tcgatcctcg
     2641 acgcggtcga gaattccctg cagctgccgc ccgattcgct cgtcgactca cgcattgtgt
     2701 tgcgcgacta tggcaacatg tcctcctcga cgctgatgtt tgtgctcgct cgacaattgg
     2761 gccggccgat tgagcgcggc gcggcaatcg ctttcgggcc cggcctcgcc gccgagggct
     2821 tccggttccg gagcgcatga cgagtctcgc gcaccgcgcg atcgccgagg agcagatgga
     2881 cgcggaggac ctctccgcgg ccgactatgc cgcggtgatc ggcgatctcg ccaaggcaaa
     2941 tcggtggacg ctggcggcgc ggccgaccct gtccttcgtc gcgcgcgcga cgaacggacg
     3001 gccgttccgc ctgctcgatg tcggcttcgg ccatggcgac atgctgcgca ctgtcgcgcg
     3061 ctgggccgcc cggcgcgggc agagttgcga gctggtcggc gtcgatctca atccgcgcag
     3121 cgagcccacc gctcgtgctg cgacgccgcc cgacctgccg attcgctatg taacgggcga
     3181 ttatgccgat ctggccggcg agccctggga cctcatagtc tccagcctcg tcgctcatca
     3241 catgacgcac gctcagctga tcgcgttcct gcgcttcatg gatgcgcatg cgcggatggg
     3301 ctggcttgtg aacgacctgc accgccacgg cctcgcccat ttcggctttc cgatcctggc
     3361 gacactgatg ggctggcacc ggatggtgcg tgaggacggc aagctctcga tcgctcgcgc
     3421 ctatcgtccc gccgaatggc cgccgatcct cgccgaagca ggcgtgagcg cccgcgtcta
     3481 tcgcgccttt ccgtaccggc tgtgcgtcga gaagatctgc tgatcctggg cggcgggccc
     3541 gccggctcgg ccgcggcgat cggcctagcg cgagcggggc ggcgtccgtt gctgctcgaa
     3601 cgccagcgcg aaaccgggga cgctttgtgc ggcgggttcc tgagctggca cagcctcgcc
     3661 gcgctcgacc agctcggtct cgaaaagttg cgcggcgcga ctgtcgagcg cgtgcggctg
     3721 ttcgctccgg ccggatcggc gagcgcgccg ctgccgcgcc ccgcgctcgg cgtgtcgcgg
     3781 cggcacctcg attccgcgct gctcgcccat gccgaagcgc tcggcgctcg tatcgagcgc
     3841 ggggtgctgg cgcgcgaaat cgaggggcgt tccgttcgga ccgatggcga ccggttcgag
     3901 cccgagcacc tgctgctcgc gaccggcaag catgatgtgc gcgggtgcgg acggccgcgg
     3961 cccgatgggg atccggcgct tgggctgcgc gtgcggctcg ggcccgcgcc ggcgctgact
     4021 cggctgatcg agggcgcgat agagctgcat ctgttcgatc gcggctatgc cgggctggtt
     4081 tgccaggaag acggggccgc caatctctgc ctcgccgtgc gcaagtcgcg gctggcggaa
     4141 gcgggcggcc cgcgcgcgct gatcgcggcg atcgggcgcg agctgccggc actcggcgaa
     4201 cggttcgcct ggctcgccga cgaggccgag atcgatgcga tcgcctccat cccctatggc
     4261 tggcgcgcga ccggtacgga ggcgggcgtc tatcgattgg gggatcaagc aggcgtcatc
     4321 ccgtcgctgg ccggcgaggg gatgggcatc gcgcttgcca gcggcgcggc ggccgccgcg
     4381 gccgtgctcg ccggtgaaga tgcgaagcac ttccagcagg cgctcgccgc ccggattcgc
     4441 cgcccgatcg ccgtcgcgag cggagtctgg cggctcgccg agcgcccgcc cggcggcgcc
     4501 ctgctcgtcc ggctgatgcg ccttgcgccc ggcctcgcta cgctgatcgc ccgcgccacc
     4561 cgcgtcgggc attgaagccg ccaaggctgc gcgccacatt cgcgtcatg
//
LOCUS       DASQVK010000056         2692 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_382955,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000056 DASQVK010000000
VERSION     DASQVK010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2692
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_382955"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(111..353)
                     /locus_tag="VE567_01205"
     CDS             complement(111..353)
                     /locus_tag="VE567_01205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47490.1"
                     /translation="MQRVRVGLTGLGAVLLIVAVSAAIFESARHQPSAALAPTNRTEQ
                     TVANMVGTAKQAPADPLTEIGLTPAASNTAAPAPAK"
     gene            complement(416..1384)
                     /locus_tag="VE567_01210"
     CDS             complement(416..1384)
                     /locus_tag="VE567_01210"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HYZ47491.1"
                     /translation="MTLPDTLALIGNTPLVRLKGPSEATGCDIYGKCEFMNPGASVKD
                     RAALRIVEDAEERGVLSPGGTIVEGTAGNTGIGLALVGNAKGYRTIIVMPETQSREKM
                     DTLRALGAELVLVAAAPYSSPCHFVHTSRRIAEETPNAIWANQFDNIANRRAHIHGTA
                     EEIWTQMEGRVDGFTCAVGTGGTLAGVGLGLKAKDPNVTIALTDPYGAALYSYYACGE
                     LKAEGSSVAEGIGQGRITANLEGAPVDTQFRISDAEGLAQVEALLSEEGLCLGLSSGI
                     NVAGAIALARQLGPGKRIVTVLCDTGFRYLSTLYNPEWLRTKGLGV"
     gene            1615..2103
                     /locus_tag="VE567_01215"
     CDS             1615..2103
                     /locus_tag="VE567_01215"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033958 - DNA-deoxyinosine glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006285 - base-excision repair, AP site
                     formation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HYZ47492.1"
                     /translation="MIRHASFPPVVDRRTQILILGSLPGAASLAAGRYYAHPRNQFWR
                     LVGSVINVDLQRLDYDARLAALLEHRIGLWDVIAEAERAGSLDAAIRNPAANDLQSLV
                     QSLPDLRTIGFNGGTAARIGEMQLGAFAALFRLVRLPSSSPAHAIAFETKLRQWRSLS
                     FG"
     gene            2222..2605
                     /locus_tag="VE567_01220"
     CDS             2222..2605
                     /locus_tag="VE567_01220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009821182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47493.1"
                     /translation="MTRFAPLSAAAALLALAACNNSNKPEVIDTNPDPMANQIANAAP
                     VELPPPVTDSAIYRCKDNSIVYVDFMGDKTQANVRTKKDGTPVHVKAEGADKPLTGGN
                     GFSVSGNGKTVQIAVDGGAAQTCNR"
BASE COUNT          468 a          887 c          857 g          480 t
ORIGIN      
        1 ggaaaatccg ggagaaaagg cgcgaactat cgcgtttaag gtgggcctcg gccttggcag
       61 agtccgatgt tcttgaactg ttcacgggaa agcacgggaa atcgcggctt ttacttggcc
      121 ggggccggtg ccgcggtatt gctggcggcg ggtgtgagac cgatctcggt caacgggtcc
      181 gcaggcgcct gcttggccgt gccgaccatg ttggcaacag tctgttcggt ccgattggtc
      241 ggggcgagcg cggcggaggg ctggtggcgc gcagactcga agatggcggc tgacaccgca
      301 acgatcaaca gcacagcgcc gagcccggtc aacccgacgc gaacccgttg catgccagcg
      361 cgtttgtctt ccgacatggc ccgcgagtgt agcaagtccc gcgccgaacg caaactcaga
      421 cgccaagccc cttcgtgcgc agccattcgg gattgtagag cgtcgagaga tagcggaagc
      481 cggtgtcgca cagcaccgtc acgatccgct tgcccggtcc gagctggcgc gccaaggcga
      541 tcgcgccggc cacatttatg ccagacgaca agccgaggca caggccttcc tcgctcagca
      601 gcgcttcgac ctgcgccagc ccttccgcgt ccgagatccg gaattgcgta tcgacgggcg
      661 cgccttccag gtttgcggtg atccgaccct ggccaatacc ttcggcaacc gagctgccct
      721 cggccttcag ctcgccacag gcatagtagc tatagagcgc cgcgccgtac gggtccgtca
      781 acgcgatcgt gacgttcggg tccttggctt tgaggccgag cccgacaccg gccagcgtgc
      841 ccccggtgcc gaccgcgcag gtaaagccgt cgacgcgccc ttccatctgc gtccagatct
      901 cctcggccgt gccgtggatg tgcgcgcggc ggttggcgat attgtcgaac tggttggccc
      961 agatcgcatt cggcgtttcc tcggcgatcc ggcgcgaggt gtgcacgaaa tggcaggggc
     1021 tggaataggg tgccgcggcg accagcacca gctcggcgcc cagcgccctg agcgtgtcca
     1081 ttttctcgcg gctctgcgtt tcgggcatga cgatgatcgt gcgatagccc ttggcgttgc
     1141 cgaccagcgc caggccgatg ccggtattgc cggcggtccc ctccacgatc gtgccgcctg
     1201 ggctcagcac gccccgctcc tcggcatcct cgactattct cagcgccgcc cggtccttga
     1261 ccgaagcgcc ggggttcatg aactcgcatt taccgtagat gtcgcagccg gtcgcctcgc
     1321 tcggcccttt caggcgcacc aaaggcgtgt tgccgatcag tgccagcgtg tcgggtaatg
     1381 tcatgccggc ggacgtaggg ccggtaggcg ccacgggcaa gcaggcgaaa cttgttgctg
     1441 ctcaagcggc gctgcactga ggtaagcaca atcttcctca ggagagtctt gcgcgcccga
     1501 aagcccgagg cagattgaca tctggaggtt agaaatgtgc gctcagctga acttcgacga
     1561 caagcaaacg atcacgcttg ctggagagtt gggccggcag cttggcagcg caatttgatc
     1621 cgccacgcct ccttcccgcc ggtggtggat cggcgcaccc aaatcctgat tctcggcagc
     1681 ctgccgggcg ccgcttcgct ggccgcgggg cgctattatg cccatccccg gaaccagttc
     1741 tggcggttgg tgggctcggt gatcaacgtg gatctacaga ggctcgacta tgacgctcgc
     1801 ctggccgcgc ttctcgagca tcgcatcggg ctttgggacg tgatcgccga ggcagagcgc
     1861 gccggcagtc tcgacgccgc gatccggaac cccgccgcca acgacctgca aagcctcgtc
     1921 cagtccctgc ccgatctgcg cacgatcggc ttcaatggcg gcaccgccgc ccggatcggg
     1981 gaaatgcaac tcggcgcttt cgcggcgctt tttcggctgg tgcgactgcc gtccagcagc
     2041 ccggcgcacg cgatcgcttt tgaaacgaag ctccggcagt ggcggtcact gtcgttcggc
     2101 tgacatttct tcccgaactg agcgaaattc cgtgaatgac agcgcttgac cgccgaacgt
     2161 cacgtcacat tgtcaagcgc cacttgaccg ggcatgctgc gcccgcgaaa gccggaggcc
     2221 tatgacgcga ttcgctcccc tctccgccgc ggcggcgctg ctggcgcttg ccgcctgcaa
     2281 caattccaac aagccggaag tcatcgacac caatccggat ccgatggcca accagatcgc
     2341 caacgcagcg ccggtcgagc tgccgccgcc ggtcaccgac agcgcgatct accgctgtaa
     2401 ggacaacagc atcgtctatg tggacttcat gggcgacaag acgcaggcca atgtccgcac
     2461 gaagaaggac ggcacgccgg tgcacgtgaa ggccgaaggc gcagacaagc cgctgacggg
     2521 cggcaacggc ttctcggttt ccggcaacgg caagaccgtg cagatcgcgg tggatggcgg
     2581 cgcagcccag acctgcaacc gctgatcttc cgaaggttca acaagccggc gcggcgatcg
     2641 ctgcgccggc ttttttatgc cgcgtcgatc gctgccggct cgtactgatt gc
//
LOCUS       DASQVK010000057         4822 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_3671, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000057 DASQVK010000000
VERSION     DASQVK010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4822
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3671"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            250..852
                     /locus_tag="VE567_01225"
     CDS             250..852
                     /locus_tag="VE567_01225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010215766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYZ47494.1"
                     /translation="MRFSFTGAALAALATPALVLAQPADPARATIQSLCDGLIATMKA
                     GKKAGAKGRAAAIAPVLDHSFDLALMARLSVGTSWAGMTPTQQQAVTAAFRRMTIAQY
                     AKNFDNFSGQSFTIAPQVEARGSDRLVRTTLNSPGDAPVAIAYRLRQTGGGWRVIDIF
                     YRNAVSQIATRRADFAQTLQKGGANALIARLNQIAAEAGG"
     gene            849..1742
                     /locus_tag="VE567_01230"
     CDS             849..1742
                     /locus_tag="VE567_01230"
                     /inference="COORDINATES: protein motif:HMM:NF016236.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HYZ47495.1"
                     /translation="MILALLAAAALQQSNPPNEPSAPIPYAAAAGAPQHAKGDPLESF
                     NRRMFRSYLRFDRDVFGPVARGYKKAVPNPVRSGLRNALSNLTEPVVFLNYLLQLKPG
                     KAIETFGRFLINSTLGFGGLVDMAKTPGVRLPHRPNGFGNTLGFYGVKPGPFLFLPVL
                     GPTTFRDLFGGQADGLVLPLAVGKPFDRWEYVVGTGVISGLDKRAESEDELKALLGDA
                     VDPYATLRSSYLQVREAEIRALKGKRGPEQAVPGSELEEPLEDPGQTPAASSPPQGAA
                     PELEDPLADPAQAAPEPPKPD"
     gene            complement(1729..4323)
                     /locus_tag="VE567_01235"
     CDS             complement(1729..4323)
                     /locus_tag="VE567_01235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HYZ47496.1"
                     /translation="MSHGPVPRLVSLSVRRPRAVLALTLVAAALALLFVARNFAMTTD
                     TAALISPDVAWRQQEQATENAFPQLRDAMLVVIDGQTPELAERAAARLTARLAADRRH
                     FRLVRRPDGGDFFAREGLLFSSLPEVRATTSALIDAQPLLGPLAADPSLRGVASALST
                     MLDGVEAGSTDLGKIDPAMRALDRTMGGVLAGRPIPFSWYRLFEAQGGLAAPERRLIL
                     AQPVLDHEALMPGEAASAAVFAAARAEQLDPMRGATVRLTGEVPLADEEFATLNENIG
                     AVGVLMLAAMLLTLWLATRSVRLVAALLLTVVAGLIVTTALGLAAVGRLNLISVAFIP
                     LFVGLGVDFGIQLGVRFNAERRAGLAPSAALEAAATALGAPLSLAAGAVFLGFAAFLP
                     TAYIGIAELGVISGLGMIVALLFSVTLLPAAILLFTPPLPREEVGFAQLAPVDRFLER
                     RRSAVLWAFAISLVVSIALLPWVRFDFNPLHLRDPNAPAMRTLSDLTRDPDRTPNTID
                     VLAPDPAAAAALARRLERIAEVGRVVTVDSFVPADQPAKLALISDAQMLLDLTLNPFD
                     VAPPPRDPELVSALRQTAAKLRAVAGGKADPASADARRLAQTFERLAGATPKQRAQAN
                     AALAEPLGVMLDGVRALLQAEPITRETLPPAIVRDYVAPNGLTRIQLFPRGDANDNRV
                     LQRFRAAVERLTPSVSGLPVATQKAASTVAGAFIQAGVIALALIGLLLFAVLRSMREV
                     AFTLAPVVLSIFLTLASCVLIGLPINFANIIAFPLLLGVGVAFHIYFVMAWRAGAHDL
                     LQSSLARAVLFSALATGSAFGSLWLSRHPGTASMGEILLVSLVWTLICALIFEPALLG
                     PQRKPSPA"
     gene            complement(4327..4752)
                     /locus_tag="VE567_01240"
     CDS             complement(4327..4752)
                     /locus_tag="VE567_01240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2141 domain-containing protein"
                     /protein_id="HYZ47497.1"
                     /translation="MAVVAAALPPDAALVVEVSNVRNGRGHVHVDLCPEGQFLTDNCQ
                     IAGNAPARPGVTIVTFRNVPPGRYAAQVFHDENDDKKVDRALFGIPKEGVGFSRDAPI
                     RLSAPKWGDAAFDHVREPQVIRLRMRYFLGPSGPAPAAH"
BASE COUNT          849 a         1615 c         1701 g          657 t
ORIGIN      
        1 cggcgcaaaa gccgcgcggc ttggcgagaa tcacctcgat cggcgaggca tctacgggga
       61 ccgtcgaacg catctgcacc atgacctcgc ccctttgccc ctcggaacgc gcctgaaatc
      121 cagactatat ctagcggcgg aattcccgcg gaaaaagagg acggcgttgc ggacgcgaaa
      181 tcggccgttc aggacgtgga ccctatgggc cgctcgccct atgttgacgc agcaatagga
      241 agagttcgca tgcgcttttc gttcaccggt gcggcactgg ccgcgcttgc cacgccagcc
      301 ctggtgcttg cgcagccggc ggatccggcg cgcgccacga ttcagtcgct gtgcgacggg
      361 ctcatcgcga cgatgaaggc cggcaagaag gccggagcga aggggcgcgc ggctgcgatc
      421 gcgccagtgc tcgatcacag cttcgatctc gctctgatgg cgcggctctc ggtcggcacg
      481 agctgggccg gcatgacgcc tacgcaacag caggcagtca ccgcagcgtt ccggcgcatg
      541 acgatcgcgc aatatgccaa gaatttcgac aatttctccg gccagagctt cacgatcgcg
      601 ccgcaggtcg aagcgcgcgg gagcgaccgg ctggtccgca ccacgctgaa cagccccggc
      661 gatgcgccgg tggcgatcgc ctatcggctc cggcagacgg gcggcggctg gcgcgtgatc
      721 gacattttct accgcaacgc cgtcagccag atcgcgacgc gacgcgccga tttcgcgcag
      781 acgctgcaaa aaggcggggc gaatgcgctg atcgctcggc tgaaccagat cgccgccgag
      841 gctggcgggt gatcctggcg ctgctcgcgg ccgccgcgct ccagcagtcc aaccccccaa
      901 acgagccttc agcgcccatc ccctatgctg ccgcagcggg agcgccgcag catgccaagg
      961 gcgatccgct cgaatccttc aaccggcgca tgtttcgatc gtacctgcgg ttcgaccgcg
     1021 acgttttcgg ccccgtcgcg cgcggatata aaaaggcggt gccgaacccg gtgcggtccg
     1081 gacttcgcaa tgcgctcagc aacctgaccg aacccgttgt cttcctgaac tacctgctgc
     1141 agctgaagcc cggcaaggcg atcgagacgt tcggccgctt cctgatcaac tcgacgctcg
     1201 gctttggcgg gcttgtcgac atggcgaaaa cgccaggcgt caggctgccg caccggccga
     1261 atggctttgg caacacgctc ggcttctatg gcgtgaagcc ggggccgttc ctgttcctgc
     1321 cggtgctggg accgaccacg ttccgcgacc tgttcggcgg ccaggcggac ggcctggtgc
     1381 tgccgctcgc ggtcggcaag ccgttcgacc gctgggaata tgtggtcggc acgggcgtga
     1441 tctccggcct ggacaagcgc gccgagtcgg aggacgagct caaggcgctg ctgggcgacg
     1501 ccgtcgatcc ttatgcgacg ctccgatcga gctatctcca ggtccgcgag gcggaaatcc
     1561 gcgcgctcaa agggaagcgc ggccccgagc aagccgtgcc gggatcggag ctggaggagc
     1621 cgctggagga tcctggacaa acgcccgcgg cgtcatcgcc cccgcaagga gcagcgcccg
     1681 aactcgaaga tccgcttgcc gatccggcgc aggccgcgcc ggagccgcct aagccggact
     1741 aggcttgcgc tgggggccga gcagcgccgg ttcgaagatc agcgcgcaga tcagcgtcca
     1801 cacgagcgag accagcagga tttcgcccat gctcgcggtg ccgggatggc gcgagagcca
     1861 gaggctcccg aaggcactcc cggtcgccag cgcgctgaac agcaccgcgc gcgcaaggct
     1921 cgattgcagc aggtcatggg cgccggcgcg ccaggccatg acgaaataga tgtggaaagc
     1981 gacgccgacg cccagcagca gcggaaaggc gatgatgttc gcgaaattga tcgggaggcc
     2041 gatcagcacg cagcttgcga gcgtcaggaa aatggagagc accaccggcg cgagcgtgaa
     2101 ggcgacctcc cgcatgctgc gcagcacggc gaacagcaaa aggccgatga gcgcgagggc
     2161 gatcactccg gcctgaatga acgctcccgc gacggtggag gcggctttct gggtggcgac
     2221 cggcaggccc gaaaccgacg gagtcaggcg ttcgaccgct gcgcggaacc gttggagcac
     2281 gcgattgtcg ttcgcgtcgc cgcgcgggaa cagctggatg cgggtgagcc cgttcggcgc
     2341 gacatagtcg cgcacgatgg caggcggcag cgtctcgcgc gtgatcggct ccgcctgcag
     2401 caacgcgcgc acgccgtcca gcatcacacc gagcggttcg gcgagcgctg cgttcgcctg
     2461 agcgcgctgc ttgggcgtgg cgcctgcgag gcgttcgaag gtctgcgcga gccgccgggc
     2521 gtcggcggag gccggatcgg ccttgccacc ggccaccgcg cgcagcttcg cggcggtctg
     2581 acgtagtgcc gagacgagct ctggatcgcg gggaggcggc gcgacgtcga acggattgag
     2641 ggtaaggtcg agcagcatct gcgcgtcgga tatcagcgcg agctttgccg gctggtcggc
     2701 cggcacgaag ctgtcgaccg tcaccacccg cccgacttca gctatgcgct ccagccggcg
     2761 cgccagcgcc gcggcggccg cgggatcggg ggcgagcacg tcgatcgtgt tcggcgtgcg
     2821 atcgggatcg cgggtcagat cggaaagggt acgcatcgcg ggcgcgttcg ggtcgcgcag
     2881 atgcagcggg ttgaagtcga accggaccca gggaaggagg gcgatgctga cgacaaggct
     2941 gatcgcgaac gcccagagca ctgcgctgcg gcgccgttcg aggaagcgat cgaccggggc
     3001 gagctgcgcg aacccgactt cctcccgcgg cagcggcggc gtgaagagca ggatcgcggc
     3061 gggcagcaac gtcacgctga acagcagggc gacgatcatg ccaaggcccg aaatcacgcc
     3121 gagctccgcg atgccgatat aggcggtcgg caggaaggcc gcgaagccga ggaacaccgc
     3181 gcccgctgcc agagacaaag gtgcgccgag cgccgttgcc gccgcttcga gcgctgcgga
     3241 aggggcaagc ccggcccggc gctcggcatt gaagcggacg ccgagctgga tgccgaaatc
     3301 gacgcccaat cccacgaaca gcgggatgaa cgcgaccgag atgaggttga ggcgcccgac
     3361 ggcggcgagg cccagcgcgg tggtgacgat cagcccggcg acgaccgtca gcagcagcgc
     3421 cgcgacgagc cgcaccgacc gggtcgccag ccacagcgtc agcagcatgg ccgccagcat
     3481 cagcacgccg accgcgccga tattctcgtt gagcgtcgcg aattcctcat cggccagcgg
     3541 cacttcgccg gtgagccgca cggtcgcgcc gcgcatgggg tcgagctgct cggcgcgcgc
     3601 ggcggcgaaa acggccgcgc tcgccgcttc gcccggcatc agcgcttcgt gatcgagcac
     3661 gggctgggca aggatcaggc ggcgctcggg cgcggcaagc ccgccttgcg cttcgaacag
     3721 ccgataccag gaaaagggaa tcggcctgcc ggccagcacg ccgcccatgg tgcggtcgag
     3781 cgcccgcatc gccgggtcga tcttgccgag atcggtcgag ccggcttcca cgccgtcgag
     3841 catcgtcgaa agcgcgcttg ccacgccgcg cagcgacggg tcggcggcca gggggccgag
     3901 cagaggctgg gcatcgatca gcgccgatgt ggtcgcgcgg acctccggca gggacgaaaa
     3961 gagcagcccc tcgcgtgcga agaagtcgcc gccatcgggg cgccgtacga ggcggaaatg
     4021 acgccggtcc gccgcgaggc gcgccgtcag ccgggcggcg gcgcgttcgg ccagctcggg
     4081 cgtttggccg tcgatcacga ccagcatcgc gtcgcggagc tgcggaaagg cgttctcggt
     4141 cgcctgctcc tgctggcgcc aggcgacatc aggagagatc agcgccgccg tgtccgtggt
     4201 catcgcgaaa ttgcgcgcga cgaagagcag cgccagcgcc gccgcgacca gtgtcagcgc
     4261 cagcaccgcg cgcggccggc gcacgctcag gctcacgagc ctggggaccg ggccgtggct
     4321 cattgctcag tgcgcggcgg gcgcgggacc ggaaggcccg aggaaatagc gcatgcgcag
     4381 ccggatgacc tgaggctcgc ggacatgatc gaacgccgca tcgccccatt tcggcgccga
     4441 gaggcggatg ggcgcgtcgc gcgaaaagcc gaccccttcc ttgggaatgc cgaacagcgc
     4501 acgatcgact ttcttgtcgt cattctcgtc atggaaaact tgcgcagcat aacgtccggg
     4561 cggcacgttc cgaaacgtca cgatcgtcac gcccggccgg gcgggcgcat tgccggcaat
     4621 ctgacaattg tccgtgagga actggccttc ggggcagaga tcgacatgca catggccgcg
     4681 gccattgcgc acgttcgaga cctcgaccac cagcgcggcg tcgggaggga gcgccgccgc
     4741 tacaaccgcc atctacgacg cacccagcgg gcgcgccgcg tccagcgcca ccgaattgtg
     4801 ccgcagcgcc ttgagcaccg tc
//
LOCUS       DASQVK010000058         3508 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_446343,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000058 DASQVK010000000
VERSION     DASQVK010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3508
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_446343"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            115..921
                     /locus_tag="VE567_01245"
     CDS             115..921
                     /locus_tag="VE567_01245"
                     /inference="COORDINATES: protein motif:HMM:NF003738.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent protein deacetylase"
                     /protein_id="HYZ47498.1"
                     /translation="MGNSDLKAFIESHQRLFVLTGAGCSTNSGIPDYRDADGTWKGTQ
                     PVRFQAFVADDATRRRYWARSMIGWRRFGYALPNDAHHALARLEASGRSQMLLTQNVD
                     RLHQAAGSRVVIDLHGRLDLVRCMTCSAALRRADFQNDLVRLNAAWADLDAVLLPDGD
                     ADLDRMDFSDFAVPHCTSCGGLMKPDVVFFGENVPRSQVALAMENLEQADAMLVVGSS
                     LMVYSGFRFAQAAAHLAIPIAAVNLGRTRADDLLTLKVEDRCEAALSFLL"
     gene            complement(1074..1292)
                     /locus_tag="VE567_01250"
     CDS             complement(1074..1292)
                     /locus_tag="VE567_01250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007706233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="HYZ47499.1"
                     /translation="MRTWQVERRKRTRHLIELGGLVVKAGIVDLTGNDRAMIFGALLW
                     MADKLQSDQAERARALWAEKGKQAFKAD"
     gene            complement(1294..1620)
                     /locus_tag="VE567_01255"
     CDS             complement(1294..1620)
                     /locus_tag="VE567_01255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010335929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="HYZ47500.1"
                     /translation="MRKPRDFDAELKALGDKARDLKSRKVHQLGELVIATGADALNAN
                     ELAGALIVLAETKEAGKREAWARRGAAFFQSRAKRNAPTTDRNTDGAPAQPSGAQPAS
                     SRKGAT"
     gene            1791..>3508
                     /gene="traA"
                     /locus_tag="VE567_01260"
     CDS             1791..>3508
                     /gene="traA"
                     /locus_tag="VE567_01260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006023182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ti-type conjugative transfer relaxase TraA"
                     /protein_id="HYZ47501.1"
                     /translation="MAIYHLHVKIIGRKSGSSAVASAAYRSGSRLRDERLGRDQDFSA
                     KRGVVHSEVVLPEHAPEAWSDRERLWNDVEAFEIRKDAQLAREVEFAIPREMMQAQGI
                     ELARDFVRGEFVDRGMIADLNVHWDVAEDGMLKPHAHVMLTMRAVDENGFGRKVRDWN
                     RTEMVERWRRRWAEIANERLAELDIDARIDHRSLKAQGIALEPQTQVGAPAQRIDGEG
                     IEAADRAEMHREIARGNGVRIIANPSLGLDAITQQQSTFTQRDLAKFAHRHSDGIDQF
                     NEVMGAMRGAPDLVELGKDARGEDRFTTRDMIHAERRLHHAARLMAERERHEVNDADR
                     QAALARAEARGLVLSGEQADALAHITDGRDLGIVVGHAGTGKSALLGVARDAWEAAGY
                     EVRGVALSGIAAENLQSGSGIASRTIASLEHGWEQGRDLLTNSDVLVIDEAGMVGTRQ
                     LERVLSHAAAAGAKVVLVGDPQQLQAIEAGAAFRSIHERHGGAEIGEVRRQRQGWQRD
                     ATRDLANGRTGNALGAYRSHGLVHEAPTREEARGDLIERWDRERQASPDQSRIILTHT
                     NDEVRTL"
BASE COUNT          609 a         1121 c         1148 g          630 t
ORIGIN      
        1 gtggatctgc atggcgcacc aaaacgatga cgataggatc ggacgttccc agcacactga
       61 cgagcgactg cgcgcctgga aacgcgggca aggacgcacc aactatgctt cgagatggga
      121 aacagcgacc tcaaagcatt cattgaaagc caccaacgac tgttcgttct cacaggtgcc
      181 ggctgcagca cgaactccgg gataccggac tatcgggatg cggacggcac ctggaaggga
      241 acgcagcctg tgcgctttca ggcgttcgtc gcggacgacg ccacccgacg ccgttactgg
      301 gcccgcagca tgatcggctg gcgtcggttc ggctatgccc tgccgaatga cgcccaccac
      361 gccttggccc ggctagaggc cagcggccgg agtcagatgc tgctcaccca gaacgtggac
      421 cggctgcacc aggcggccgg gagcagggtg gtgatagacc tccacggacg gctcgacctg
      481 gtccgctgca tgacctgctc ggccgcccta cgccgcgccg actttcaaaa cgatctggtc
      541 cgcctcaacg ccgcctgggc cgaccttgat gcagtcctct tgccggatgg cgacgccgat
      601 ctcgaccgca tggatttctc ggacttcgcc gtgcctcatt gcacgtcctg cgggggcctt
      661 atgaagccag acgtcgtgtt cttcggcgaa aacgttccgc gtagccaagt cgccttggcc
      721 atggagaact tggagcaggc cgacgccatg ctggtcgtgg gctcgtcctt gatggtctat
      781 tcgggcttcc ggttcgccca agcggctgcc cacctcgcca ttccaatcgc tgccgtcaat
      841 ctgggccgga cgcgggcaga cgaccttctg accctaaagg tcgaggaccg ctgcgaggcg
      901 gctctctcgt ttctcctata gcgccgcaga gcttggcgaa cgcttcgtag cccttagccg
      961 tcgcaatggc tttgtcgcgc agcatcgcgt tgaagaccac gttctcgatc gcgacgacga
     1021 gctgttcgct catgcgcttg cggccgatga atttgcgcag ttcgccgcgg cgcctagtct
     1081 gccttaaagg cttgcttccc tttttcggcc cacagcgctc gtgcccgttc ggcttgatcg
     1141 ctttggagct tgtctgccat ccagagtagc gcgccgaaga tcatggcgcg gtcgttgccg
     1201 gtcaggtcca cgataccggc tttgacgact agccccccga gttcgatgag gtgccgcgtg
     1261 cgcttgcggc gctcgacctg ccatgtacgc atgtcatgtc gcgcccttgc ggcttgatgc
     1321 cggttgcgcg ccgctcggtt gcgcaggagc gccatccgtg ttgcggtcag ttgttggtgc
     1381 atttcgcttc gcccggcttt gaaaaaacgc ggccccgcgc ctggcccacg cctccctctt
     1441 tccagcctct tttgtctcgg ccagcacgat cagcgcacca gccagttcat tggcgttaag
     1501 cgcgtctgcc cccgtggcga tgacaagttc gccgagctga tgcaccttgc ggctcttgag
     1561 gtcgcgtgcc ttgtctccaa gtgccttcag ttcagcatca aagtcccgtg gcttacgcat
     1621 agtcgtctcc gtcggtgttg atggagagat gatagtcggc cgccggcata atgctgtaat
     1681 gttgtcagga cggcctggga cgcagtagtc cctcccgaga ttttttcgag ggagggcgcg
     1741 cttatacgtc gtgccgacgt gcgcttcgcc ctgtagatga tctggtcgcg atggcgatct
     1801 atcatcttca cgtcaagatc attggccgca agtctggctc tagcgcggtg gcgtcggccg
     1861 cctaccgctc gggatcgcgg ctgcgcgacg agcggctcgg ccgtgaccag gatttttccg
     1921 ccaagcgcgg cgtcgtccat tccgaggtgg tgctgcccga acatgcgccg gaggcatgga
     1981 gcgatcgcga acggctctgg aatgatgtcg aggcgttcga gatccgcaaa gatgcccagc
     2041 ttgcccgcga ggtcgagttc gccattccgc gcgagatgat gcaggctcag ggcattgagc
     2101 tggcccgcga cttcgttcgg ggcgaattcg tcgaccgagg catgatcgcc gatctcaatg
     2161 tgcattggga cgtggccgag gacggcatgc tcaaacccca tgcccatgtc atgctgacca
     2221 tgcgcgcggt ggacgagaac ggttttgggc ggaaggtacg ggattggaac cgcaccgaga
     2281 tggtcgagcg ctggcggaga cgctgggccg agatcgccaa tgagcgcctg gctgagctcg
     2341 acatcgacgc tcgcatcgac catcgcagtc tcaaagccca aggcatcgcg ctggagccgc
     2401 aaacccaggt cggcgcgccg gcacagcgga tcgacggcga aggaatcgag gccgccgacc
     2461 gcgccgagat gcatcgcgag atcgcgcgcg gcaatggcgt gaggatcatc gccaatccct
     2521 cccttgggct ggacgcgatt acccagcagc aatcgacctt cacgcagcgc gacctggcga
     2581 aattcgctca ccgtcacagt gacggaatcg accagttcaa tgaggttatg ggcgcgatgc
     2641 gcggcgcgcc cgatctggtc gagctcggca aggatgctcg cggcgaagat cgcttcacca
     2701 cccgcgacat gatccatgcc gaacggcgcc tgcaccatgc cgccagactc atggcggaac
     2761 gggaacgcca tgaggtgaac gacgccgaca ggcaggcggc gctggcgcgc gcggaagcac
     2821 gcggtcttgt cctgtccggc gagcaggccg acgcgctggc gcatatcacc gacgggcgcg
     2881 atcttgggat cgtggtcggc catgccggaa cgggaaagag cgcgctgctg ggggtggccc
     2941 gggacgcctg ggaagcggcc ggctatgagg tccggggcgt cgcgctgtcc ggcatcgccg
     3001 cggaaaacct ccaaagcgga tcgggcattg cgtcccgcac cattgccagc ctggagcacg
     3061 gctgggaaca gggccgcgac ctgctcacga acagcgatgt cctggtgatc gacgaggcgg
     3121 gcatggtcgg cacgcgccag ttggaacgcg tgctgtccca tgcggcagcg gccggcgcca
     3181 aggtcgtgct ggtcggcgat ccgcagcagc tgcaagcaat agaagcgggc gcggcgtttc
     3241 ggtcgatcca cgagcgtcac ggcggggcgg aaatcggcga ggtgcgccgc cagcgccagg
     3301 gctggcagcg ggacgccacg cgggatctcg ccaatggcag aaccggcaat gcgctgggag
     3361 cctaccgctc ccacggcttg gtgcatgagg ctccaacccg cgaagaggcg cggggcgatc
     3421 tgatcgagcg ctgggaccgc gagcggcagg cctcgcccga ccagagccgg atcatcctga
     3481 cccacaccaa cgacgaggtc cgcaccct
//
LOCUS       DASQVK010000059         2128 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_35289, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000059 DASQVK010000000
VERSION     DASQVK010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2128
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35289"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..234)
                     /locus_tag="VE567_01265"
     CDS             complement(<1..234)
                     /locus_tag="VE567_01265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HYZ47502.1"
                     /translation="MNYESGIRADGTIIVEDGSRRRRRMLIIGAAVIAVALVLAFLMF
                     GRGGQPAAAPGAADKGKAQAPHISFIIPGREAVS"
     gene            467..1180
                     /locus_tag="VE567_01270"
     CDS             467..1180
                     /locus_tag="VE567_01270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HYZ47503.1"
                     /translation="MKSFLPLALAAASAPALAQTAPGTVQPIAGALLELSAQGESRRT
                     PDIATVSAGVVTQAADAAGAMRENAARMERVIAAIKRAGVADRDIRTSNISLQPQYRY
                     GENQPPVITAYQASNMVTVRFRDIARSGAILDALVATGANQINGPELGLDDPAAAMDE
                     ARLDAIAKARARAQLYARAAGLKVKRILSISEAAFELPRPIPLMMRATGARAEAADSK
                     IEPGEQALNATVSIRFELE"
     gene            complement(1236..1493)
                     /locus_tag="VE567_01275"
     CDS             complement(1236..1493)
                     /locus_tag="VE567_01275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017184327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HYZ47504.1"
                     /translation="MGLILWLVVGGVIGWLASIVMRTDAQQGILLNVVVGIVGAFIGG
                     MIFAGGSINNAGLNLYSFLVSLLGAIILLAIVNLFRRGSVR"
     gene            1680..>2128
                     /locus_tag="VE567_01280"
     CDS             1680..>2128
                     /locus_tag="VE567_01280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017181943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HYZ47505.1"
                     /translation="MATAALRNSRMSEAEWQARQQLAACYRVFAMLGWDEMIYNHITV
                     KVPDEQDAFLINPFGLHFSEVKASNLVKIDIDGNKLDDNPHPVNLAGFVQHSVFHRHL
                     PDAHCIMHTHTTAGMAVSSLEGGLQPINFYAANFIGQIAYHDFEGVTV"
BASE COUNT          441 a          703 c          632 g          352 t
ORIGIN      
        1 cgaaaccgct tcgcgcccgg ggataatgaa gctgatatgc ggcgcctggg ccttgccctt
       61 gtcggcagcc ccgggcgctg cagccggctg tccgccacgg ccgaacatga gaaaggcgag
      121 cacgagagcg actgcgatca cggcggcccc gatgatcagc atacgccggc gccggcgcga
      181 tccgtcctcg acgatgatcg tcccgtcggc ccgaatgccc gattcgtagt tcatgttcac
      241 gtgccttccg ccccgacgat ctctatggtt gcggagctgt attatcgtaa taactcaccc
      301 gcctcaaggg cggaaaatcg cgatttccgt cgtgtcgcgc acgaaggggc cgggcgagtt
      361 ggcgccgggt gctcctaccc cattgccatg acggaagaaa gacgcgttca tgatcgatgc
      421 agcccgtgcg cgccatcacg gcagcgaaac aagcatggag ccgatgatga agtctttcct
      481 gccgctcgca ctggccgccg cgtcggcgcc cgcgctcgcc cagaccgcgc cggggaccgt
      541 tcagccgatc gccggcgctt tgctcgaatt gtcggcgcag ggagaatccc gccgtacgcc
      601 tgatatcgca accgtgagcg ccggcgtcgt cactcaggcg gccgacgccg cgggcgcgat
      661 gcgcgagaat gccgcgcgaa tggagcgcgt catcgccgcc atcaagcgcg ccggggttgc
      721 cgaccgcgac atccgcactt caaatatctc gctccagccg caatatcgct atggcgaaaa
      781 ccagccgccc gtcatcaccg cctatcaggc cagcaacatg gtgacggtcc gcttccgcga
      841 catcgcccgg tcgggtgcga tcctggacgc gctggtcgcg accggggcca accagatcaa
      901 tggccccgag ctcggcctcg acgaccccgc cgccgcgatg gacgaagcgc ggctcgacgc
      961 gatcgccaag gcccgcgcgc gcgcccaact ctatgctcgc gcagccggat tgaaagtgaa
     1021 gcgaatcctt tcgatcagcg aagcggcgtt cgagctgccg cgcccaattc cactgatgat
     1081 gcgcgccacc ggcgcgcggg cggaggccgc cgactcgaag atcgagccgg gcgagcaggc
     1141 gttgaatgcc actgtatcca tccgcttcga gctcgaatga aaaaagggcc gggcaaaggc
     1201 ccggcccctt cagatgacgt tggttaaagt aaatcttaac gcacgctgcc gcggcggaaa
     1261 agatttacga tagcaagcag gataatcgca cccagcaatg agaccaggaa cgaatagagg
     1321 ttcaatcctg cgttgttgat cgatccgccg gcaaatatca taccgccgat aaaggcgcca
     1381 acaatgccga cgacgacatt aagcagaatg ccctgttgcg catcggtgcg cattacgata
     1441 cttgcaagcc agccaatgac gccgccgacc accagccaaa gaataagtcc catcttgtcc
     1501 tcctgtcgga accaacgcgt tttcgtcagt aatcttctgg tgttgaaccg aggcattaga
     1561 cgcttgggac gccgcaacgg ttccgcaacg gacccgagat tgtttcgcgc ccggcccgcc
     1621 gccagccgat tgcggggctg caaggcgcgt gcgataaacc gcgccgaagg agaggcacga
     1681 tggcgactgc agcgctgcgc aattcccgga tgagcgaagc cgagtggcag gcccggcagc
     1741 agctggccgc ctgctaccgc gtgttcgcga tgctcggctg ggacgagatg atctacaacc
     1801 acatcacggt gaaagtgccg gacgagcaag acgcgttcct gatcaacccc ttcggcctgc
     1861 acttcagcga agtgaaagcc tcgaacctcg tcaagatcga catcgacggc aacaagctcg
     1921 acgacaatcc ccatccggta aaccttgccg gcttcgtcca gcacagcgtc ttccatcgcc
     1981 atctgcccga tgcgcattgc atcatgcata cccacacgac ggccggcatg gcggtgagtt
     2041 cattggaagg cgggctgcag ccgatcaact tctacgcggc caatttcatc ggccagatcg
     2101 cctatcacga cttcgaaggc gtcactgt
//
LOCUS       DASQVK010000060         2159 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_351482,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000060 DASQVK010000000
VERSION     DASQVK010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2159
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351482"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..272
                     /locus_tag="VE567_01285"
     CDS             <1..272
                     /locus_tag="VE567_01285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HYZ47506.1"
                     /translation="GKRIAFDGPRRTVIDGPFAETRELVAGFWVWEVKDMDEAVAWAK
                     RCPNPMPGPSELEIRPFYESADFEELLTPEIKATHERTREKLGGS"
     gene            327..1580
                     /locus_tag="VE567_01290"
     CDS             327..1580
                     /locus_tag="VE567_01290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HYZ47507.1"
                     /translation="MAGGETHQAIEAVFRIERARLVGGLARIVRDVDLAEELAQDALL
                     VALSEWPRTGVPANAGAWLMTTAKRRAIDAIRRDKMRTRKHEEIARELDGAFDGRDES
                     LAMDDELGDEVLGLIFTACHPVLSPDARAALTLRIVGGLTTDEIARAFLSSEATIAQR
                     IVRAKKTIGQAGLSFEVPRGAERAARLSSVLEVIYLIFNEGYAATAGDDLFRPGLARE
                     AQRLGRMLAALSPKDAEVFGLLALMEIQASRLPARIGPDGALLTLTEQNRARWDQLLI
                     RRGLDALARAEALGGADGPYALQAAIAACHARAKKPADTDWLRIAALYDRLCVAMPSP
                     IVDLNRAVAHSMAFGPEAGLRLVDEIAGAAALQNYAPFPAARGDFLFRAGRRAEARFE
                     FEAAARLTRNGRERAFLLARADACV"
     gene            complement(1585..2157)
                     /locus_tag="VE567_01295"
     CDS             complement(1585..2157)
                     /locus_tag="VE567_01295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013846601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HYZ47508.1"
                     /translation="MGAAALLLVAALTQFAARRPQPHVAAAKPPRPALSDRIFASAKQ
                     PLDLPGAVAPVRSLLAVSGPMRFGQSLWDETGVPPGPLWIRVDRDAQLISVFRGGHEI
                     GTAVILYGAPEKPTPAGRYPILAKLRNHRSSLYEAEMPYTLRLTGDGVAIHASSIREG
                     RATHGCIGVPEDFAAKLFEAAQTGDSVVIV"
BASE COUNT          344 a          701 c          778 g          336 t
ORIGIN      
        1 aaggcaagcg catcgcattc gacggtcctc gccgtacggt catcgatggg cctttcgccg
       61 aaacgcgcga gctcgtcgcc ggcttctggg tctgggaagt caaggacatg gatgaggcgg
      121 tcgcctgggc gaagcgctgc cccaatccca tgccggggcc gagcgagctc gagatccggc
      181 cgttctacga gagcgccgat ttcgaggagc tgctgacccc cgagatcaag gcgacccacg
      241 agcggacgcg cgagaagctg ggcggcagct gaggcgatcg acggctgccc acttgccgcc
      301 gttatggctt cggccgaaaa ggcggcatgg cgggcggcga gacgcaccag gcgatcgaag
      361 cggtttttcg tatcgaacgg gccaggctcg tcgggggcct ggcccgcatc gtgcgcgatg
      421 tcgatcttgc cgaggaactg gcgcaggatg ccctgctcgt cgccctgtcc gaatggccca
      481 ggaccggcgt tccggccaat gccggcgcct ggctgatgac gaccgccaag cgccgcgcca
      541 tcgacgcgat ccgtcgcgac aagatgcgga cgcgcaagca tgaggagatc gcgcgggagc
      601 tggacggcgc gttcgacggc agggatgaga gcctggccat ggacgatgag cttggcgacg
      661 aggtcctggg cctcatcttc acggcctgcc accccgtgct ttcgcccgat gcgcgcgcgg
      721 cgctcacact acgcatcgtg ggcggcctga cgaccgacga aatcgcccgc gctttcctgt
      781 ccagcgaggc gacgatcgcc cagcgcatcg tccgcgcgaa gaagacgatc ggccaggcgg
      841 ggctcagctt cgaggtgccg cgcggcgccg aacgggcggc gcggctctcc tcggtgctgg
      901 aagtcatcta cctcatcttc aatgaaggct atgccgcaac ggcgggcgac gatcttttcc
      961 ggccaggcct ggcccgggaa gcgcagcggt tgggccgcat gctggcggcg cttagcccga
     1021 aggacgcaga agtgttcggc ctgctggccc tgatggaaat ccaggcatcg cgtctgccgg
     1081 cacgcatcgg gccggacggc gcgctcttga cgctgaccga gcagaatcgc gcgcgctggg
     1141 atcaattgtt gattcgccgc ggccttgacg cgctcgcccg ggccgaagcc cttgggggcg
     1201 ccgacggccc atatgctttg caagccgcca ttgccgcgtg tcatgcgcgt gcgaaaaagc
     1261 ccgccgatac cgattggctc cgcattgcag cgctctacga ccggctatgc gtggcgatgc
     1321 cgtcgccgat cgtggacctc aatcgggcgg tcgcccatag catggccttc gggcccgaag
     1381 cgggcctgcg actggtcgac gaaattgccg gcgcagccgc cttgcaaaat tatgcgccgt
     1441 tcccggcggc gaggggcgat tttctgtttc gggccgggcg ccgggccgag gcccgctttg
     1501 aattcgaggc tgcggccagg ctcacgcgca acgggcggga aagggccttt ctcctcgccc
     1561 gcgcagacgc ttgtgtctga tgccctacac gataaccacg gagtcgcctg tctgcgccgc
     1621 ctcgaacagc ttggcggcga aatcctccgg cacgccgatg cagccgtgag tggcgcggcc
     1681 ttcgcggatt gagctcgcgt ggatcgcgac gccgtcgccg gtgaggcgga gcgtgtaggg
     1741 catctccgct tcgtaaaggc tggagcggtg gtttcgcagc ttggccagaa tcgggtagcg
     1801 gccggccggg gtcggctttt cgggagcgcc gtagaggatc acggcggtgc cgatctcatg
     1861 cccgccgcga aagacggaga taagctgcgc gtcgcgatcg acgcggatcc agagcgggcc
     1921 gggcgggacg ccggtttcgt cccacagcga ctggccgaag cgcatagggc cggagaccgc
     1981 caacaggctc cgcaccgggg cgaccgcgcc gggaaggtcg agcggctgtt tcgctgaggc
     2041 gaatatccgg tcggatagag cagggcgggg cggcttggcg gcagcgacgt gcggctgcgg
     2101 ccgcctcgcc gcgaactgcg tgagcgccgc gaccagcagc agcgcggcgg cgccgatac
//
LOCUS       DASQVK010000061         3893 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_383320,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000061 DASQVK010000000
VERSION     DASQVK010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3893)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3893)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3893
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_383320"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..361
                     /locus_tag="VE567_01300"
     CDS             <1..361
                     /locus_tag="VE567_01300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47509.1"
                     /translation="ADWADLHIRPIIDRVTDSHPAIEGSVCSDVNGYLPTHQTARSKP
                     PKPNDPEWNDRNCRNRRIFNDDEATMRAVKSNASFMMAVYLLDRGSEELMVKNVFVPL
                     WINGKRWGNLEIAYVDR"
     gene            complement(539..1390)
                     /locus_tag="VE567_01305"
     CDS             complement(539..1390)
                     /locus_tag="VE567_01305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010217182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HYZ47510.1"
                     /translation="MRFEGTRDYVATDDLKVAVNAAVTLRRPLLVKGEPGTGKTVLAQ
                     EIAKAIGAPLIEWNVKSTTKAAQGLYEYDAVARLRDGQLGDPRVHDISNYIRPGKLWE
                     AFTSERLPVLLIDEIDKADIEFPNDLLHELDRMEFHVYETKETVHAKERPIVVITSNN
                     EKELPDAFLRRCFFHYIKFPDRETMQAIVDVHFPGIQKILVQRAMDIFYEVREVPGLK
                     KKPSTSELLDWLKLLLNEDMPLDVLQNRDPSRAIPPLHGALLKNEQDVMLFERLAFMA
                     KRQGRPG"
     gene            complement(1488..2156)
                     /locus_tag="VE567_01310"
     CDS             complement(1488..2156)
                     /locus_tag="VE567_01310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003047360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47511.1"
                     /translation="MTQAIEMVRSEQVADLLISLVAAEGTAGHRYPLAPELTSGPQAM
                     RNLADAAHYLSVLHGRAPGVIDHAAKCTAHPAALGWLAAARDGFASERALLTKLAVAT
                     GPLPSTPGQAECESAVLQQRHALEMLARSERAGCALGAAFALALDWMAVRAVLEAAAR
                     RVSVAPGDCALPSEEETRTVAMGAADSPAFERAMGFGAQQLLAQQRGLWDLLEARQQA
                     RAKA"
     gene            2324..2749
                     /locus_tag="VE567_01315"
     CDS             2324..2749
                     /locus_tag="VE567_01315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003051357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HYZ47512.1"
                     /translation="MATQHHATIDTPDVKNRHQYSITDLSEEFDVTPRALRFYEEEGL
                     ISPIRRGTTRIYTKRDRARLAWILRAKRTGFSLAEIREMIDLYDVGDGRHMQRKVTIE
                     KCKARVELLKRQRLDIDAQIDELTRFVRLVEDVEAKASH"
     gene            2864..>3893
                     /locus_tag="VE567_01320"
     CDS             2864..>3893
                     /locus_tag="VE567_01320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010217087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYZ47513.1"
                     /translation="MPQYTPPVRDTRFILDHVIGLDRYANLPGFGNATPDTVEAVLSE
                     GGRFVAEVVFPLNQIGDREGCTRHEDGSVTTPTGFKEAYRQFVEAGWPTLVGPEEFGG
                     QGLPHVVMTAFEEYLASANMAFQMYPGLTAGATAAILAKGSDAQKALYTPKMISGEWG
                     GTMNLTEPQCGTDLGLIRTRAEPAEDGSYRITGTKIFISAGEHDLTENIVHLVLAKLP
                     GAPAGTRGISLFLVPKFLPIDGKPGPRNGVACGGIEHKMGIRASSTALLNFDNATGWL
                     VGRENQGLRCMFTMMNAARLAVGMQGLGVAEAAYQAGAAYAKERKQGKSLARGEAGGA
                     EADPIIVHP"
BASE COUNT          696 a         1275 c         1237 g          685 t
ORIGIN      
        1 cgccgattgg gccgatcttc acatccgtcc gattatcgat cgcgtgaccg actcccatcc
       61 cgcgatcgaa ggctcggtct gctccgatgt gaacggctat ctgccgactc accagaccgc
      121 ccggtcaaag cctcccaagc cgaacgaccc ggaatggaac gaccggaatt gccgcaaccg
      181 ccgcatattc aatgacgacg aagcgaccat gcgtgcggtc aagagcaatg cctctttcat
      241 gatggccgtc tatctgctcg atcgcggcag cgaggagctg atggtcaaga acgtcttcgt
      301 gccgctgtgg atcaacggca agcgctgggg caatttggaa atcgcctacg tggatcggta
      361 agttcgctcc agctgcgcgc cattcgacgc cccacagcgg gaagcgcgct attttttctc
      421 ccgaagacat gaagacgcga aggtgcaaag cgtccccgga ctcccctcct tccggctcgt
      481 gtcttcgtct gggctcaaac ggcctcggcg ctgcgcgggc gcaggaacag cttagccctt
      541 acccgggccg gccttgccgt ttcgccatga aggcgaggcg ttcgaacagc atcacgtcct
      601 gctcgttctt gagcaacgca ccgtggaggg gagggatcgc cctggaaggg tcgcggttct
      661 gcagcacgtc gagcggcatg tcctcgttga gcagcagctt cagccagtcg agcagttcgc
      721 tggtggacgg cttcttcttc aggccgggca cctcacggac ctcgtagaag atatccatcg
      781 cgcgctgcac caggattttc tggatgcccg gaaaatgcac gtcgacgatt gcctgcatcg
      841 tctcgcggtc cgggaatttg atatagtgga aaaagcagcg gcgcaggaac gcgtcgggca
      901 gctctttctc gttgttggac gtgatgacga cgatcggccg ctccttggcg tggaccgtct
      961 ccttggtctc gtagacatgg aattccatgc gatcgagctc gtgcagcaga tcgttcggga
     1021 actcgatatc cgccttgtcg atctcgtcga tcaacagcac gggcagccgc tcggacgtga
     1081 acgcctccca tagcttgccc gggcggatat agttggaaat gtcgtgcacg cgcgggtcgc
     1141 cgagctgacc gtcgcggagc ctcgcgaccg cgtcatattc gtaaagcccc tgcgcggcct
     1201 tggtcgtcga tttgacgttc cattcgatca gcggggcgcc gatcgccttg gcgatttcct
     1261 gtgcgagcac ggtcttgccg gtgcctggct cgcctttgac gagcagcggg cggcgcagcg
     1321 tcacggccgc attgaccgcc actttcaggt cgtcggtggc gacataatcc cgcgtgcctt
     1381 caaagcgcat gcccggcctt tcccttgctc aaggccggcc gggataggtg acgtttacgg
     1441 caagggcaat aaggtcgcgc cagccccgaa cgaaagcccg tccgatctta cgccttggcc
     1501 cgtgcctgtt gccgggcttc gagcagatcc caaaggcccc gctgctgcgc gagcaattgc
     1561 tgtgcgccga agcccatggc gcgctcgaag gccggcgaat ccgccgcgcc catcgcaacc
     1621 gtgcgcgttt cctcctcgct cggcagcgcg cagtcgcccg gggccacgga tacgcggcgc
     1681 gccgctgcct cgaggaccgc gcgcaccgcc atccagtcga gcgccagcgc gaaagcggcg
     1741 cccagagcgc agcccgcccg ctctgaccga gcaagcattt cgagagcatg gcgctgttgc
     1801 agcaccgccg attcgcactc cgcctggccg ggcgtgctcg gcaatgggcc ggtcgcaacc
     1861 gcaagcttgg tcaggagcgc ccgctcggag gcaaagccat cgcgggcagc ggccagccag
     1921 ccgagcgcag ccgggtgtgc cgtgcacttg gcggcatgat cgatcacgcc cggtgcgcgg
     1981 ccgtgcagca ccgaaagata gtgcgcggca tcggccaggt tgcgcatggc ctggggcccg
     2041 gaggtcagct ccggggcgag cgggtagcgg tgcccggcgg tcccttccgc ggctaccagc
     2101 gagatcagca agtctgcgac ttgctcgctg cgtaccattt cgatcgcttg cgtcatctac
     2161 tcatccttac tgcccgcgcg ctccgccaag cggcgctggt gatgggcgaa gcgtgtagcg
     2221 ctcgcgcgta aagaggtggt ttatggggcg ttcggcaaac ggggttaacg ccgtcggcaa
     2281 agaagcttga cgcttacgta aatggcatgc tttagaacgg ggcatggcca ctcagcacca
     2341 cgccacgatc gatacgccgg acgtcaagaa tcggcaccaa tattcgatta cggacctttc
     2401 cgaggagttc gacgtcactc cgcgcgcgct ccgcttttat gaggaagagg ggctgatctc
     2461 gccgatccgc cggggtacga cgcgtatcta caccaagcgc gaccgggctc gcctcgcctg
     2521 gatcctgcgc gccaagcgca ccggcttcag cctcgcggaa atccgcgaga tgatcgacct
     2581 ctacgatgtg ggcgacggcc gtcacatgca gcgcaaggtg acgatcgaaa agtgcaaggc
     2641 gcgcgtcgaa ctgctgaagc ggcagcggct cgatatcgac gcgcagatcg acgaactcac
     2701 gcgtttcgtg cggctggtgg aagacgtcga agccaaagcg agccattgac ggcattttcc
     2761 gttacacctg cgcaagcggg gttggttcgt ttcctgtttg cgggcaatcc tgacgacgct
     2821 cctgcctttg cgggggtggg aattgtctct ggagatcgga cgaatgcccc aatacacccc
     2881 gcctgtccgc gatacgcgct tcatcctgga tcacgtgatc ggcctggacc gctatgccaa
     2941 tctgccgggt tttgggaatg cgacccccga cacggtggag gcagtgctga gcgagggcgg
     3001 gcgcttcgtc gccgaagtgg tgttcccgct caaccagatc ggcgatcgcg aaggctgcac
     3061 ccggcacgag gacggctccg tcaccacgcc aaccggcttc aaggaagcct atcgccagtt
     3121 cgtcgaggcc ggttggccta cgctggtcgg gcctgaggag ttcggcgggc aggggttgcc
     3181 gcatgtcgtc atgaccgcgt tcgaggaata tctcgcctcg gccaacatgg ccttccagat
     3241 gtacccgggc ctcaccgcgg gcgcgaccgc ggcgattctc gccaaaggct cggacgcgca
     3301 aaaggcgctc tacacgccca agatgatctc gggcgaatgg ggcggcacaa tgaacctgac
     3361 ggagccgcaa tgcggcaccg acctcggcct gatccgcacc cgcgccgagc ccgccgaaga
     3421 cggcagctac cgcatcacgg gaaccaagat ctttattagt gccggcgaac acgacctaac
     3481 ggagaacatc gtccatctcg tactcgccaa gctgcccggc gcgcctgcgg ggacgcgcgg
     3541 catcagcctg ttcctggtgc cgaaattcct gcccatcgac ggcaagcccg gcccgcgcaa
     3601 cggcgtcgcc tgcggcggca tcgagcacaa gatgggcatc cgcgcctcgt cgaccgcgct
     3661 gctcaacttc gacaacgcca ccggttggct ggtcgggcgc gagaaccagg gcctgcgctg
     3721 catgttcacc atgatgaacg cggcccggct cgccgtcggc atgcaggggc tcggcgtcgc
     3781 cgaagccgcc tatcaggccg gcgccgccta tgcgaaggag cgcaagcaag gcaagtcgct
     3841 cgcccgcggc gaagcgggcg gcgcggaagc cgatcccatc atcgtccatc ccg
//
LOCUS       DASQVK010000062         5207 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_35445, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000062 DASQVK010000000
VERSION     DASQVK010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5207
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35445"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..393
                     /gene="dctP"
                     /locus_tag="VE567_01325"
     CDS             <1..393
                     /gene="dctP"
                     /locus_tag="VE567_01325"
                     /inference="COORDINATES: protein motif:HMM:NF015445.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein DctP"
                     /protein_id="HYZ47514.1"
                     /translation="LVEGSDNPLWVLAAMRVYEVQKHVTITNHSWDAFVTVANSRAWA
                     RLPPNIQEIASKHFTEAALGQRQDTAKLETEAEAKLVANGITIHRPPPGQFREALAKT
                     DYYPSWRQKIGPEGWAVLQRASDLGQLS"
     gene            405..1436
                     /locus_tag="VE567_01330"
     CDS             405..1436
                     /locus_tag="VE567_01330"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYZ47515.1"
                     /translation="MYDGYFIFDNVIHMFDNRPGNKLGEEGRKIIDSIWGAAKLFSNS
                     QYPAHPSFGDSYIEPAEAYRILFEESDTDMAVAQTVPLMGWFKEGFSPARANHALAAA
                     YPDRVVFCGGVDPLYLGSRAVLDEMQRQREEWNAVSFKFYQSQLNGTMWRADDRYIAY
                     PLWEKCLELGVTSVQFHKGLPFGRQLLEHQRPNDIEQAALDFPELTFIIHHLGIPFID
                     DTINIASRHPNVWLALSAWINIYAIQPRLALDIIGKALMYVGEDRLLYGSEAFVWPSL
                     QPYIKAFADMQMPEDLQEGYGYPELTREMKRKVFGENQARLFGIDLAKKRQELAGKAR
                     KQPELQPAK"
     gene            1433..1729
                     /locus_tag="VE567_01335"
     CDS             1433..1729
                     /locus_tag="VE567_01335"
                     /inference="COORDINATES: protein motif:HMM:NF013286.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HYZ47516.1"
                     /translation="MTAAPDSATLLEALDPVRRRLRAHAGDVELVSVSGEGEVTLAFT
                     GACVACPAQAMTFGTAVLPVLERVPGVSKVSAKGMTVSPAAMRRIRAMFGPVEP"
     gene            1726..2517
                     /locus_tag="VE567_01340"
     CDS             1726..2517
                     /locus_tag="VE567_01340"
                     /inference="COORDINATES: protein motif:HMM:NF039346.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYZ47517.1"
                     /translation="MSPHPPTGAFPRALSETLLWTGGCLSVLYHDRMVHSHTSAYLVL
                     GTERTMLVDTGNAQDWPRIEGDVERFLAGRTLDFVFPTHGELPHCGLLTAWLDKYPDA
                     LAVGSLRDFPLYYPDYADRMRSVAAGEAIDLGDRRIVFLPPVWRDLRDTLWAFDTTER
                     TLFVADAFAYLHYHEADRCDHLISEQPLPAVEMIKYFNERAMYWTRFTDTERSFADID
                     EMLAVLRPKLIATAHGGVIDATEAMLPLVKQGMTVRAPRILAQAS"
     gene            2529..3467
                     /locus_tag="VE567_01345"
     CDS             2529..3467
                     /locus_tag="VE567_01345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47518.1"
                     /translation="MLEIVPDTLYAVGGGLPDSLPVSWLTDGRVGWMPVQCYVFRGGG
                     DAMVLDSGIGAHRRLVADGLAGLLHGAGRKRVLVGRWEPDAMVNLPSLIEAFGIREIL
                     SYGGINPLDFFEGFEAAVTHSVAQQAAGPAELVPIGPGDVIEVGRLRLEVLSPVLRLL
                     LTTWYYERVTRSLFTADAFGLLANPDAPYPCIAHPEPGRLSPEILRENLVTKFDWLIG
                     AHCDALVADLARLRDGFTIDRICPTFGAVIEGSDAVTAVFDAAIAALEMLARERPRRA
                     LAGFDWQRALSPPASVDPFDPGRRPATAGSAIGRAE"
     gene            3522..4412
                     /locus_tag="VE567_01350"
     CDS             3522..4412
                     /locus_tag="VE567_01350"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYZ47519.1"
                     /translation="MDSGAARLAQAPGFYRFRLGDFDIVPLHDGVLSFDRPPGFVRNA
                     TDEQVGGAYAAAGMPRDKVTITFTPLAVRTPEGIVLIDSGLGQSGPPGTGALMRNLSA
                     AGLRPEDVSTVIISHFHGDHIGGLVGKDGSLAFPNAELAVPAQEWAYWMDEGNMSRAP
                     EGLQANFAQARGVFGAHSGRVRQFGWGEQMVPGFTAVDANGHTPGMSALLIASGREQM
                     MFVADITNNPLVFARNPDWQVVFDMDPVAATATRRRLLDRAAADNLRLSFFHAPFPAT
                     GYIAKSGTGYEYLPALWAAS"
     gene            complement(4553..5194)
                     /locus_tag="VE567_01355"
     CDS             complement(4553..5194)
                     /locus_tag="VE567_01355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYZ47520.1"
                     /translation="MEREADIEAAVAELTEARANLLDLRTIILVHQPDRTIVRRALRS
                     GIDAVLSKDISGEVLQRSLDLVMLGQKLFPAAVFGEAEAGAGQPIAAGLPTTQAVPPA
                     LKVSSTPAATSMPVSMALGGEIPLSEREDQILRCLVAGLANKLIARDLGITEGTVKVH
                     IKALLRKIRAGNRTQAAIWAMSRGITLENGTVPPAPGSANRPRPALQSLGGPN"
BASE COUNT          827 a         1803 c         1708 g          869 t
ORIGIN      
        1 ctcgtcgaag gctcggataa cccgctctgg gtgctggccg ccatgcgcgt ctacgaggtc
       61 cagaagcacg tcaccatcac caaccacagc tgggacgcct tcgtcaccgt cgccaacagc
      121 cgcgcctggg cccgcctgcc gcccaacatc caggagatcg cgtccaagca tttcaccgag
      181 gcggcgctgg gccagcgcca ggacaccgcc aagctcgaga ccgaggcgga ggcgaagctg
      241 gtcgcgaacg gcatcaccat ccaccgaccg ccgccgggtc agttccgcga ggcgctcgcc
      301 aagaccgact actacccgag ctggcgtcag aagatcggtc ccgagggctg ggccgtgctc
      361 cagcgcgcct ccgatctcgg ccaactcagc taggggatac gaccatgtac gacggctact
      421 tcatcttcga caacgtcatc cacatgttcg acaaccgccc cggcaacaag ctgggcgagg
      481 aggggcgcaa gatcatcgat tcgatctggg gcgccgccaa gctgttctcg aacagtcaat
      541 accccgccca tccgagcttc ggcgattcct acatcgagcc cgcggaggcg taccggatcc
      601 tgttcgagga gtccgacacc gacatggcgg tggcgcagac cgtcccgctg atgggctggt
      661 tcaaggaggg tttttcgccc gcccgcgcca accacgccct agccgccgcc taccccgacc
      721 gggtcgtctt ctgcggcggc gtcgacccgc tgtacctcgg ctcgcgcgcc gtgctggacg
      781 agatgcagcg ccagcgcgag gagtggaacg cggtcagctt caagttctac caatcccagc
      841 tgaacggcac gatgtggcgg gccgacgacc gctacatcgc ctacccgctc tgggagaagt
      901 gcctcgaact cggcgtcacc agcgtccagt tccacaaggg cctgccgttc ggccgccagc
      961 tgctcgagca ccagcgcccg aacgatatcg agcaggcggc gctcgacttc cccgagctca
     1021 ccttcatcat ccaccatctc ggcatcccgt tcatcgacga cacgatcaac atcgcctcgc
     1081 gccatccgaa cgtctggctg gcgctctccg cctggatcaa catctacgcc atccagccgc
     1141 gcctcgcgct cgacatcatc ggcaaggcgc tgatgtatgt cggcgaggac cggttgctct
     1201 acggctccga agccttcgtc tggccgagcc tgcagcccta catcaaggcg tttgccgaca
     1261 tgcagatgcc ggaggatctg caggagggct acggctaccc cgagctcacg cgcgagatga
     1321 agcgcaaggt gttcggcgag aaccaggcgc ggctattcgg catcgacctc gccaagaagc
     1381 ggcaggagct cgccggcaag gcgcgcaagc agcccgaatt gcagcccgcc aagtgaccgc
     1441 cgccccagac agcgccacgc tgctcgaggc gctggacccg gtccgccgtc gtctgcgcgc
     1501 ccatgccggc gatgtcgagc tggtctccgt gtccggtgaa ggcgaggtca cgctcgcctt
     1561 caccggcgcc tgcgtcgcct gcccggcgca ggcgatgacc ttcggcaccg ccgtcctgcc
     1621 ggtgctcgag cgcgtgcccg gggtcagcaa ggtttccgcc aagggcatga ccgtctcgcc
     1681 cgcggccatg cgccggatcc gcgccatgtt cggccccgtc gagccatgag cccgcacccg
     1741 ccgaccgggg cgtttccccg cgcgctgagc gagacgctgc tgtggaccgg cgggtgcctg
     1801 agcgtgctgt atcatgaccg gatggtgcac tcgcacacct cggcctacct ggtgctgggg
     1861 accgagcgca cgatgctggt cgataccggc aatgcgcagg actggccgcg catcgagggg
     1921 gacgtggagc ggttcctggc cggacggacg ctcgatttcg tgttcccgac ccatggcgaa
     1981 ctgccgcatt gcggcctgct gacggcctgg ctcgacaagt atccggacgc cctcgccgtc
     2041 gggtcgctgc gcgactttcc actctactac ccggactatg cggatcgcat gcgcagcgtc
     2101 gcggccggcg aggcgatcga cctcggcgac cggcggatcg tcttcctgcc gccggtctgg
     2161 cgggacctgc gcgacacgct gtgggcgttc gacaccacgg agcgaacgct gttcgtcgcc
     2221 gacgcattcg cgtacctcca ctatcacgag gccgaccgtt gcgatcatct gatcagcgag
     2281 cagccgctgc cggctgtgga gatgatcaag tatttcaacg aacgggcgat gtattggacc
     2341 cgctttaccg acacggagcg cagcttcgcc gatatcgacg agatgctggc cgtgctgcgc
     2401 ccgaagctga tcgcgacggc gcatggcggc gtgatcgacg cgactgaggc catgctgccg
     2461 ctggtcaagc agggcatgac cgtgcgcgcg ccacggatcc tggctcaggc atcctagtgc
     2521 caggctcggt gctcgagatc gtgcccgaca cgctgtacgc ggtcggcggt ggcttgccgg
     2581 attcgctgcc ggtcagctgg ctaaccgacg gccgggtcgg ctggatgccc gtccagtgct
     2641 acgtcttccg cggcggcggc gatgccatgg tgttggacag cggcatcggc gcgcaccggc
     2701 gattggtcgc ggacgggctc gcggggctgc tgcacggcgc tggccgcaag cgcgtgctgg
     2761 tggggcgctg ggaacccgac gccatggtga acttgccctc gctgatcgag gcgttcggca
     2821 ttcgcgagat cctgtcctat ggcggcatca acccgctcga cttcttcgaa ggcttcgagg
     2881 cggccgtgac gcactcggtc gcgcagcagg cggccgggcc ggccgaactg gtcccgatcg
     2941 ggcccggcga cgtcatcgag gtcggcaggc tccggctcga agtgctttcg ccggtgctgc
     3001 ggctgttgct gaccacgtgg tattacgagc gggtcacgcg atcgctgttc accgccgacg
     3061 cgttcggctt gctcgcgaac ccggacgctc cctatccctg catcgcgcac ccggagccgg
     3121 gtcggctctc gcccgagatc ctgcgcgaaa atctggtcac caagttcgac tggctgatcg
     3181 gcgcgcattg cgacgcattg gtggccgacc tcgcacgttt gcgcgatggg tttacgatcg
     3241 accgcatctg ccccacattc ggcgcggtga tcgagggatc cgacgcggtg actgcggtct
     3301 tcgacgccgc aattgccgcg ctcgagatgc ttgcgcgcga gcggccccgc cgcgcactcg
     3361 ccgggttcga ttggcagcgt gcgctatcgc ctcctgccag cgtcgacccg ttcgatccgg
     3421 ggcgtcggcc agccacggcc ggttccgcaa tcggccgagc cgagtaaact gggctcacgc
     3481 ctaccctgag cgacaaagga gatcagatca tggatgcagc tgtggacagc ggcgcggcac
     3541 gcctcgcgca agcccctgga ttctaccgtt tccgcctggg cgacttcgac atcgtcccct
     3601 tgcatgacgg cgtgctcagc ttcgaccgtc caccggggtt cgtccgcaat gccactgacg
     3661 agcaggtcgg cggagcctac gccgccgcgg ggatgccaag ggacaaagtg acgatcacgt
     3721 tcacccccct ggccgtccgg acgccggagg gcatcgtcct catcgatagc gggctcggcc
     3781 aaagtggccc gcccgggact ggcgcgctga tgcggaacct gagtgcggcc ggcttgcgcc
     3841 ctgaggatgt cagcaccgtg atcatcagcc acttccatgg cgaccacatc ggcggcctgg
     3901 tcggcaagga cggctcgctt gccttcccga acgcggagct ggccgtgcct gcccaggagt
     3961 gggcctactg gatggacgaa ggcaatatga gccgcgcgcc ggaggggctc caagccaatt
     4021 tcgcgcaggc gcgcggcgtg ttcggggcac attccgggcg cgtgcgtcag ttcggttggg
     4081 gcgagcagat ggtccccggg ttcaccgcgg tggacgcgaa cggccacacg ccgggcatgt
     4141 cggcgctcct gatcgcctcg ggccgcgagc agatgatgtt cgtcgccgac atcaccaaca
     4201 accctctggt cttcgcgcgc aacccggatt ggcaagtcgt gttcgacatg gatccggtcg
     4261 cggcgacggc gacccggcgc cggctactgg accgcgccgc cgccgacaac cttcgcctgt
     4321 cgttcttcca cgcgccgttc cccgcgacag gctatatcgc caagagcggc acggggtacg
     4381 agtatctgcc ggcgctctgg gcggctagct gacggatagg gccggcaagt ccgctacggc
     4441 cgggatggcg cgaacgacgt ttcatcctgg ccgcgtttgc acgagcaagt tgaaccgcga
     4501 cgccttcagc cttgccctgg gtgaaacccg tggcaatcgc gattcgattc gttcagttcg
     4561 gacccccaag ggattgtaac gccgggcgcg gcctgttggc ggaacccggg gcaggtggta
     4621 cggtcccgtt ctcgagcgtg atgccgcggc tcatcgccca gatcgccgcc tgggtacggt
     4681 tacccgcgcg gatcttgcgc agcagggcct tgatatggac tttcacggtc ccttcggtga
     4741 tgccgagatc gcgcgcgatc agcttattgg caagccccgc gaccaggcag cgcaggatct
     4801 ggtcctcgcg ttccgagagc ggaatctcgc cgcctagggc catgctcacc ggcatcgacg
     4861 tggccgcggg cgtgctcgac accttcaagg ccgggggcac ggcttgtgtc gtcggcaggc
     4921 cggccgcgat aggctggccg gctccggctt ccgcctcccc gaataccgcg gccgggaaca
     4981 gtttctgtcc gagcataacc agatcgaggg aacgctgcag gacctcgccg gaaatatcct
     5041 tcgagagcac ggcgtcgatc ccggaccgca gcgcccgtcg aacgatggtc ctgtccggct
     5101 ggtgcacaag gatgatcgtt cggaggtcga gcaggttcgc gcgcgcctcg gtcaactccg
     5161 ccactgctgc ttcgatatcg gcctcccgct ccaggccaca cggggcg
//
LOCUS       DASQVK010000063         2325 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_161875,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000063 DASQVK010000000
VERSION     DASQVK010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2325)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2325)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2325
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161875"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..109)
                     /locus_tag="VE567_01360"
                     /pseudo
     CDS             complement(1..109)
                     /locus_tag="VE567_01360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212067.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            257..658
                     /locus_tag="VE567_01365"
     CDS             257..658
                     /locus_tag="VE567_01365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47521.1"
                     /translation="MTRHSTLLATTLAFALSTAAAYAEGDRTLDAARSSFPVAAAGGF
                     AATARVVPGSSAAALSALLREWDRAGFSAPSKPAQARVYGQDGAVTTGGEYHAMVSLI
                     RAAIRDSTDGRDQAALNEIAKARTLLSESGD"
     gene            complement(766..1659)
                     /locus_tag="VE567_01370"
     CDS             complement(766..1659)
                     /locus_tag="VE567_01370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HYZ47522.1"
                     /translation="MKASLAELEAVAAVARHGGFRAAARELGTSSSALSSAVAKLEER
                     LSVRLFNRTTRSVTFSDAGERFVAAVTPALAAIDSAIAHAGEHSGQPSGTLRLNMALG
                     AARMLMAPIILEYGRRFPNVDVEIVTEAALVDVIGQGFDAGVRLAEAVPADMVSVPIF
                     RTLRLLVVGSPGYFLDHPRPVVPADLLHHRCIRFRLTTGRLYRWEFERHGEGQLIDVP
                     GSLTLDETDLMLQAALDGAGLAYLSEHAVAEHVKQGRLITVLEEWSPPFHGLSLYFAQ
                     RRHMPARLRALIDLIKQVAGS"
     gene            1748..>2325
                     /locus_tag="VE567_01375"
     CDS             1748..>2325
                     /locus_tag="VE567_01375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYZ47523.1"
                     /translation="MHDITHIYIDGRFVEPRGTEMFELHNPATGAVFGRVRLGDAQDA
                     RAAIAAAKRAFPSWSQSTKPGRLDLLHRLHEAMAARRDALLDAIILEYGAPISRARWM
                     AAYASNSFLDAGRALASYNLVQKVGTAEVIMAPVGVVGLITPWNSNAGFICNKLAYAL
                     AAGCTAVIKPSEMSAAQTQVVLEALHEAGAPAG"
BASE COUNT          429 a          760 c          752 g          384 t
ORIGIN      
        1 cttgatctgc tggctgagag gcggctgtcc gatgccgacc ctggcagccg cgcgtgaagt
       61 gacgatcctc cgcgaccgcc aagaaatagc gaatgtgacg cagctccatc gcccatctcc
      121 aagacctctc acagaagcca gtattatata ttgggcgcat gaggcgaccc gtccatcttc
      181 tctgaagaga gaacaggacc tcgccgatga ccaacccacc aagcgggtca tcgcgctcga
      241 gaagggaccc gcaatcatga cgagacacag cactctgctc gccacaacct tggctttcgc
      301 actctcgacg gccgctgcgt atgctgaagg tgatcgcacg cttgacgccg cccgatcatc
      361 atttccggtc gccgcagcgg gcggcttcgc agcgaccgct cgggtggtcc cgggcagcag
      421 cgccgcggcc ctcagcgcgt tgctgcggga gtgggaccgc gccggcttca gtgcgcccag
      481 caagcccgcc caggctagag tttacggcca ggatggcgca gtgaccaccg gtggcgagta
      541 ccacgccatg gtttcgctca ttcgcgcggc gatccgggac tccactgacg ggcgtgatca
      601 ggccgcattg aacgagatcg ctaaagccag gaccttgctg tcagagagtg gcgactgaaa
      661 ttttcagaaa atggcgactg aagctttcca ttcgatgcga ctccggtccg aggtgggcgg
      721 cgcggccgga ggctacgaag ttgccccggt cgatgacgtc tctcgctatg aacccgccac
      781 ttgcttgatg aggtcgatga gcgcccggag ccttgcgggc atatgacggc gctgggcgaa
      841 gtagaggctg aggccatgaa aaggcgggct ccactcttcc agcacggtga tgaggcgacc
      901 ctgtttgaca tgctcggcga ccgcatgctc ggagagatag gcaagcccgg ctccgtccag
      961 ggcggcctga agcattaggt cggtttcgtc caaagtgagg cttccgggga catcgatgag
     1021 ctggccttct ccatgtcgct cgaactccca gcggtagagc cggccggtcg ttagcctgaa
     1081 ccggatgcag cgatggtgca gaaggtcggc cggcacgact ggtcgggggt ggtccaggaa
     1141 atagcctggc gagccgacca ccagtaagcg caaggtccgg aagatcggca ccgacaccat
     1201 gtcggccggc accgcctccg caagccgcac gccggcgtcg aagccctggc cgatgacgtc
     1261 gaccagcgcc gcttcggtca cgatctcgac atcgacattg ggaaagcggc ggccgtattc
     1321 gaggatgatc ggcgccatca gcatccgcgc tgcgcccagc gccatgttga gccgcagcgt
     1381 gccagacggc tggcccgaat gttcgccggc atgcgcgatc gcgctgtcga tcgcggcgag
     1441 cgcgggcgtc accgccgcca cgaaccgctc gccggcatcc gaaaaagtca cgctgcgtgt
     1501 tgtccggttg aacagccgca ccgacaggcg ctcctccagc ttcgcgaccg cagagctgag
     1561 cgcggaagag gatgtgccca gctcgcgcgc ggccgcgcgg aaccctccat ggcgcgcgac
     1621 ggctgcgacc gcctccaact cggcgaggct cgccttcatt gcccgatatt ccttatcagc
     1681 ctgtccgact ttgtcgtgct tatcagctca atcggcaagg tccaccttgc tccgcggaag
     1741 aagccgaatg catgacatca ctcacatcta tatcgacggc cggttcgtag agccgcgcgg
     1801 aacagagatg ttcgagctgc ataatccggc aaccggcgcg gtgttcggcc gggtcaggct
     1861 cggagatgcg caggacgctc gagccgcgat cgccgccgca aagcgcgcct ttccgtcgtg
     1921 gtcgcaaagc accaaacccg ggcgcctcga cctcctgcac cgtctgcacg aagcgatggc
     1981 ggccaggcgg gacgcgctgc tggacgcgat catcctggag tatggtgcgc cgatctcccg
     2041 cgcgcgctgg atggcggctt acgcctcgaa cagcttcctg gatgcggggc gcgccctggc
     2101 gagctacaac ctggttcaga aggtcggcac ggcggaggtc atcatggcgc cggtcggcgt
     2161 tgtcgggctg atcacgccgt ggaacagcaa cgccggcttc atctgtaaca agctcgccta
     2221 cgcgctcgca gctggatgca ccgccgtcat caagcccagc gagatgagcg cggcccagac
     2281 gcaggtcgtg ctcgaagcgc tgcacgaggc cggcgcgccg gctgg
//
LOCUS       DASQVK010000064         3997 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_256884,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000064 DASQVK010000000
VERSION     DASQVK010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3997
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256884"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..832)
                     /locus_tag="VE567_01380"
     CDS             complement(<1..832)
                     /locus_tag="VE567_01380"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016703 - oxidoreductase activity, acting
                     on single donors with incorporation of molecular oxygen,
                     incorporation of one atom of oxygen (internal
                     monooxygenases or internal mixed function oxidases)
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HYZ47524.1"
                     /translation="MPGQRKLKSLMARGAAFLGCDVAILGGAMSWVSERNLVSAISNA
                     GGFGVIACGAMSPELLDQEIAATRALTDRPFGVNLITMHPQLFDLIEICAKHEVGHVV
                     LAGGLPPAGSLEAIKGRGAKLICFAPALSLAKKLIRSGVDALVIEGMEAGGHIGPVST
                     SVLAQEILPEIADQVPVFVAGGIGRGELIAGYLEMGAAGVQLGTRFVCATESIAHPRF
                     KQAFIRAAARDAVPSVQLDARFPVIPVRALVNDGVRRFMEVQRAVVERFNRGDVAQKD
                     A"
     gene            complement(832..2073)
                     /locus_tag="VE567_01385"
     CDS             complement(832..2073)
                     /locus_tag="VE567_01385"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HYZ47525.1"
                     /translation="MARIVMKFGGTSMAGVERIRAVAERVKREVDAGNQVAVVVSAMA
                     GETDRLVAFCRGVSPLYDPREYDVVVASGEQVTSGLLAISLQAIGVKARSWMGWQLPI
                     RTSDGHGSARIAEIDTSSLDAALGSGEVAVIPGFQGVAAGERVTTLGRGGSDTSAVAV
                     AAAMKADRCDIYTDVDGVYTTDPRIVPRARKLQKITFEEMLELASVGAKVLQTRSVGL
                     AMKENVRLQVLSSFDDKPGTMIVGDDEIEEAMERQFITGIAHDKNEAKITLTDVPDRP
                     GAVASIFAPLADANINVDMIVQNIAHDTGSTDVTFTVPAAELARSLDVLEKGKEAIGY
                     ARMVHDTNVAKVTIVGVGMRSHAGVAAKMFKTLGDRGINIQAITTSEIKVSVLIEEDY
                     TELAVRVLHTAYGLDAEAAAA"
     gene            2178..2900
                     /gene="ubiG"
                     /locus_tag="VE567_01390"
     CDS             2178..2900
                     /gene="ubiG"
                     /locus_tag="VE567_01390"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008689 - 3-demethylubiquinone-9
                     3-O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HYZ47526.1"
                     /translation="MGPSTIRPEEAAHFGKLAADWWDPRGASAMLHRLNPVRLRYIRD
                     QLDHHWELDEHDRRPLAGKRAADMGCGAGLLCEPLARLGAEVVGIDAAPENIAAARLH
                     AEGQGLAIDYRVGSIEALGPVPFDVITSLEVVEHVEDPAAFVRGLADALTSGGLLILS
                     TPNRTPLSRLAMITLGEGLGAIPRGTHHWSQFLTPDELRAHIEAAGLEVLDTTGLSFN
                     PTRGFALGENLALNYLVTARRR"
     gene            complement(2951..>3997)
                     /locus_tag="VE567_01395"
     CDS             complement(2951..>3997)
                     /locus_tag="VE567_01395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011445153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HYZ47527.1"
                     /translation="RFGRAAVGSGIPQVIAAAQAPETSRALVSIPIALWKFGLTILVL
                     LGGASVGREGPTVQISAALMVAWHRALRVPISPGVLIAGGAAGVAAAFNTPLAGIAFA
                     IEELASAYEQRVAVLVMGTVMIAGLTSLGIAGDYVYFGAMGRTLPLASTLIFAPVVGL
                     LGGLAGGAFTRAVLWFGRSPSPFVKRIRESPVLFAAGMGIVVAAIGLLSGGLTWGTGY
                     APTRTLLAGDAVAPGFGPLKFIASLATTLSGVPGGVFAPSLAVGAGLGNIAALVASPQ
                     AQGPIVLLGMTAYFTGVVRAPLTAVIIMIETTASRGMILPLFAVALIADATSALISPQ
                     RLYHGLSMRFRPAE"
BASE COUNT          689 a         1332 c         1336 g          640 t
ORIGIN      
        1 gggcgtcctt ctgcgcgacg tcgccgcggt tgaagcgctc gacgaccgcg cgctgcacct
       61 ccatgaagcg ccgcaccccg tcattgacga gggcgcggac cgggatcacg gggaagcgcg
      121 cgtcgagctg caccgagggc acggcgtcgc gcgcggcggc gcggatgaag gcctgcttga
      181 agcgcggatg ggcgatcgac tcggtggcgc agacgaagcg cgtgccgagc tgcacgcccg
      241 ccgcgcccat ttcaagatag cccgcaatca gctcgccccg gccaatgccg ccggcgacga
      301 aaaccggcac ctggtcggcg atttcgggca ggatttcctg cgcgagcact gaggtagaaa
      361 ccgggccgat atggccgccc gcctccatgc cttcgatcac cagcgcgtcg acgcccgagc
      421 ggatcagctt tttcgccagt gatagcgccg gagcgaagca gatgagcttc gcgccgcgcc
      481 ccttgatcgc ctctaggctc ccggccggcg gcaagccccc cgcaagcacg acatggccga
      541 cctcgtgctt cgcgcatatt tcgatcaggt cgaagagctg ggggtgcatg gtaatgaggt
      601 tcacgccgaa cggtctgtcg gtcagcgccc tggtcgccgc gatttcctgg tcgagcagct
      661 caggcgacat cgctccgcaa gcgatcacgc cgaagccacc ggcgttcgag atggcggaaa
      721 cgagattgcg ttcggatacc caggacatgg cgccgcccag gattgcgacg tcgcagccaa
      781 ggaacgcggc gccgcgcgcc atcagcgatt tgagcttgcg ctgacccggc atcaggcggc
      841 tgccgcctcc gcatcaaggc cataggcagt gtgcagcacg cgcacggcga gttcggtata
      901 gtcttcctcg attagcaccg agaccttgat ctccgacgtc gtgatcgcct ggatgttgat
      961 gccgcgatcg cccagcgtct tgaacatctt ggcggcaacg cctgcatggc tgcgcatgcc
     1021 gacgccgacg atcgtgactt tcgcgacatt ggtgtcgtgc accatccgcg catagccgat
     1081 cgcttccttc cctttttcga gcacgtcgag cgaacgggcg agttcggctg cgggcacggt
     1141 gaaggtgacg tcggtcgagc cggtgtcgtg cgcgatgttc tgcacgatca tgtcgacatt
     1201 gatgttcgcg tcggcgagcg gggcgaagat cgaggccact gcgcccggcc ggtcgggcac
     1261 atcggtgagg gtgattttcg cttcgttctt gtcgtgcgcg atgccggtga tgaattgccg
     1321 ttccatagct tcctcgatct cgtcgtcgcc gacgatcatg gtgccgggct tgtcgtcgaa
     1381 ggacgagagc acctgcagcc gaacattttc cttcatggca agcccgacag agcgggtctg
     1441 cagcaccttg gcgccgacgc tcgcgagttc gagcatttcc tcgaacgtga tcttctggag
     1501 cttgcgcgcg cgcggcacga tgcgcgggtc ggtcgtatag acgccgtcca catcggtata
     1561 gatgtcgcac cggtccgcct tcatcgccgc ggcgaccgcg accgccgaag tatcggagcc
     1621 gccgcggcca agggtggtca cgcgctcgcc ggccgccacg ccctgaaagc ccgggatcac
     1681 cgcgacttcg ccgctgccaa gcgccgcgtc gagtgagctc gtgtcgattt cggcgatgcg
     1741 cgccgaacca tggccgtcgg acgtgcggat cgggagctgc cagcccatcc agctccgcgc
     1801 cttcacgccg atcgcctgca gcgagatcgc gagcagcccg ctcgtcactt gctcgcccga
     1861 ggcgaccacc acgtcatatt cgcgtggatc gtagagggga gagactccgc gacagaaggc
     1921 gacgagccgg tcggtctcgc cggccattgc ggaaaccacg accgcgacct ggttgccggc
     1981 atcgacttcc cgcttcacgc gctcggccac cgcgcgaatc cgctccaccc cggccatcga
     2041 ggttccgccg aatttcatta cgatgcgggc catagggtgt gtatgttgct cctgagggag
     2101 gcgctctgtt aaggggcggc ctctgcgttg gcaagaattg gctgaggccg tgccggcgcc
     2161 ccttggagtt taaggtgatc ggcccgtcaa ccatccgccc cgaggaagct gcgcatttcg
     2221 ggaagctcgc ggccgactgg tgggatccgc gcggcgcctc ggcgatgctg caccggctga
     2281 accccgtgcg gctgcgctat attcgcgacc agctcgatca tcactgggag ctggacgagc
     2341 atgaccggcg gccactcgcc ggcaagcgcg ccgctgacat gggctgtggc gcggggctgc
     2401 tgtgcgaacc gctcgcgcgg ctgggtgcgg aggtggtcgg catcgacgct gcgcctgaaa
     2461 atatcgcggc ggcgcggctc catgccgaag gccaagggct ggcgatcgat tatcgcgtgg
     2521 gcagcatcga ggcgctcggc cccgtgccat tcgacgtgat cacgtcgctc gaagtagtcg
     2581 agcatgtcga ggacccggcg gcgttcgtgc gcgggcttgc cgacgcgctg acgtcgggcg
     2641 gcttgctgat cctctcaacg cccaaccgca cgccgctttc acgcctcgct atgattacgc
     2701 tgggcgaagg cttgggcgcg atcccgcgcg gcacgcacca ttggagccag tttctgacac
     2761 cggacgaact gcgggcgcac atcgaggcgg cggggctgga agtgctcgac acgacaggct
     2821 tgagcttcaa cccgacgcgc ggcttcgcgc tgggcgagaa cctggcgctg aactacctcg
     2881 tcacggccag gcggcgctga ccagctgaac atcggcgtgg tggccgcttc ggttcacgcc
     2941 agatcctggc tcattccgcc ggacggaagc gcatcgacag gccgtgatag agccgctggg
     3001 gcgatatgag cgcacttgtc gcgtcggcaa tcagcgccac cgcaaagagc gggagtatca
     3061 tgcctcggct tgctgttgtc tcgatcatga tgatcacggc cgtgagcggc gcgcgcacga
     3121 cgccagtgaa ataggcggtc atgccaagca ggacgatcgg cccctgtgct tgcggtgagg
     3181 cgacaagcgc ggcgatgttg ccgagccccg cacccacagc gagcgacggc gcgaaaacgc
     3241 cgccgggaac gccgctcaga gtcgttgcga ggctggcgat gaacttcaaa ggcccgaagc
     3301 ccggcgcgac tgcgtcgccg gccagcagcg tgcgcgtagg cgcatagccg gtgccccagg
     3361 tgaggccgcc gctcagcagg ccaattgcgg caaccactat gcccattccc gccgcgaaca
     3421 ggaccgggct ttcccgaatc cgcttgacga agggcgaggg ggagcgcccg aaccacagca
     3481 ccgcgcgcgt gaacgcgccg ccggcaagcc cgcccagcag tcccaccacc ggagcgaaga
     3541 taagggtcga ggccaatggc aaggtgcgcc ccatcgcgcc aaaataaacg tagtcgcccg
     3601 cgatccccag gctcgtcagg ccggcaatca tcaccgtgcc catcacgagc acggccacgc
     3661 gctgttcata ggccgaagcg agttcttcaa tcgcaaaggc gatcccggcc agcggcgtgt
     3721 tgaaggcagc ggcgacgccg gcggcgcccc cagcgatcag cacgccggga gagatcggca
     3781 cgcgcagcgc gcgatgccac gcgaccatca gcgcggcgct gatctgcacc gtcggccctt
     3841 cacgtcccac cgaagcgccg ccgagcagca ccagaatagt gagcccgaat ttccagagcg
     3901 cgatcgggat tgagacgaga gctcggctgg tctccggagc ttgcgccgcg gcgataacct
     3961 gaggaatgcc ggagccgaca gcggcacgac cgaagcg
//
LOCUS       DASQVK010000065         3084 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_4004, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000065 DASQVK010000000
VERSION     DASQVK010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3084
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4004"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(50..1345)
                     /gene="hisD"
                     /locus_tag="VE567_01400"
     CDS             complement(50..1345)
                     /gene="hisD"
                     /locus_tag="VE567_01400"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017501120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HYZ47528.1"
                     /translation="MPIRLDARAVDFSERFRAFLATKREASADVEQAVRAIIAEVIES
                     GDQALLELTKKFDRVDLAQVGLKVNGDEIEAGYAACNRRALDALVFARDRIEAYHQRQ
                     RPVDERFIDALGVELGHRWTAIEAVGLYVPGGTAAYPSSVLMNAVPAKVAGVPRIVMV
                     VPAPDGQVAPLVLAAAKIAGIDEIYRVGGAQAIAALAYGTQTIRPVAKIVGPGNAYVA
                     AAKRLVFGKVGIDMVAGPSEVLIIADETGNPDWIAGDLLAQAEHDASAQSILITNDVM
                     LADAVEKAVATQLHSLPRAAVAGASWRDFGAIILVADLDQAIPLIDAVAPEHLEIETA
                     DAELLASKVRNAGAIFIGAHTPEAIGDYVGGSNHVLPTARSARFSSGLGVLDFMKRTS
                     ILKCGTDQLRALGPAAIALGEAEGLHAHARSVAMRFNPP"
     gene            complement(1378..1863)
                     /locus_tag="VE567_01405"
     CDS             complement(1378..1863)
                     /locus_tag="VE567_01405"
                     /inference="COORDINATES: protein motif:HMM:NF022612.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2948 family protein"
                     /protein_id="HYZ47529.1"
                     /translation="MEPLKFIALDKDDLEVVSTHLQDAVVRVADVHWRPQEKRLVLGL
                     DRFDWLAAIGPVPENRRCRSALRFERVLACKCKHVDPAIKDGVLNLLAVEFEQTEPPA
                     GIVTLIFSGGPVLRLHVECLEAELIDLGPSWTTTCCPCHADDLMDAPGLTPPPAHVID
                     R"
     gene            complement(1962..2393)
                     /locus_tag="VE567_01410"
     CDS             complement(1962..2393)
                     /locus_tag="VE567_01410"
                     /inference="COORDINATES: protein motif:HMM:NF023520.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3574 domain-containing protein"
                     /protein_id="HYZ47530.1"
                     /translation="MRRAGRNALVAAWLILVSAAGLSDSAKAQAIECHIGKPQQVAEL
                     FFGRKVGDRVGVSNAAWARFVDREITPRFPDGFTVIEAKGQWRDAARNAILRESSKVV
                     QIVLPGNGEDLDRLAAITQAYKQRFRQQSVAVLLRPACVAF"
     gene            complement(2412..>3084)
                     /locus_tag="VE567_01415"
     CDS             complement(2412..>3084)
                     /locus_tag="VE567_01415"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011241471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HYZ47531.1"
                     /translation="DCLIKMGAKISGAGTSRIVVEGVSRLNGARHAVLPDRIETGTYA
                     MAVAMTGGDVLLEHARADLLQAALDVLAEAGAEIAETNTGIRVARNGSGISPIDVTTA
                     PFPGFPTDLQAQLMALMTRARGTSHITETIFENRFMHVQELARLGARIHLNGECATIE
                     GVKKLKGAPVMATDLRASVSLVIAALAAEGETMVNRVYHLDRGFERLEDKLAACGAAI
                     ERISG"
BASE COUNT          552 a         1049 c          960 g          523 t
ORIGIN      
        1 acccccacca gccggtgcgt ttttttcgta ctggtacgct cgaaccggct catggcggat
       61 tgaagcgcat ggcgaccgag cgagcatgcg catgaagacc ctcggcctcg ccgagcgcga
      121 tcgcggcagg accgagcgca cgcagttggt cggtcccgca tttgagaatc gacgtgcgct
      181 tcatgaagtc gagcacgccc agcccggacg agaaccgcgc cgagcgagcg gtcggcagga
      241 cgtgattgga gccgccgacg taatcgccga tcgcctccgg cgtgtgcgcg ccgatgaaaa
      301 tcgcgcccgc attcctgact ttggacgcca acagctcggc atcggcagtc tcgatctcga
      361 gatgctccgg cgcgaccgcg tcaatcagcg ggatcgcctg atcaaggtcc gccaccagga
      421 tgatggcccc gaaatcgcgc catgaggcgc ccgcgaccgc tgcacgcggc agtgagtgga
      481 gctgcgtcgc gaccgccttc tcaaccgcgt cggcgagcat cacgtcattg gtgatcagga
      541 tcgactgcgc gctggcgtcg tgctccgcct gcgccagcag atcgccggcg atccagtcgg
      601 gattgccggt ctcgtcggcg atgatcaaca cctccgaagg tcccgcgacc atgtcgatgc
      661 ctaccttgcc gaagacgagg cgcttcgccg ccgccacgta ggcattgccg ggtccgacga
      721 tcttggccac cggcctgatc gtctgtgtgc cgtaggctag cgccgctatc gcctgcgcgc
      781 cgcccacccg gtagatctcg tcgatgcccg caatcttagc ggctgccaat accaggggcg
      841 cgacctggcc atcgggcgcc ggaaccacca taacgatgcg cgggacgcca gcgaccttgg
      901 caggcacggc attcatcagc accgaagatg gataggcggc ggtgccgccc ggcacgtaca
      961 gaccgaccgc ctcaatggcc gtccagcgat gcccgagttc gacccctagc gcatcgatga
     1021 atcgctcgtc cacgggccgt tgccgctggt gataggcctc gatccgatcg cgggcgaaga
     1081 ccagcgcatc aagcgcccgc cgattacagg ccgcgtagcc cgcctcgatc tcatcgccgt
     1141 tcaccttgag gccgacctgc gcgagatcga cccgatcgaa ttttttggtc agttcgagaa
     1201 gcgcctggtc gccgctctcg atcacctcgg caatgatcgc acgtaccgcc tgctccacgt
     1261 cggccgaagc ctcacgcttg gtggcaagaa aggcccgaaa gcgctcagaa aaatcgacag
     1321 cgcgggcatc gagacggatc ggcatggccc tgtcctgccg ggccataagc gcccgggtta
     1381 gcggtcaatg acgtgagcag gaggaggcgt caaccccggg gcgtccatca gatcgtcggc
     1441 gtggcacggg cagcaggtcg tggtccaact cggaccgaga tcgatgagtt cggcttccag
     1501 gcactcgaca tgcagccgca gcaccggccc gcccgaaaat attaaggtga cgatcccggc
     1561 cggcggctcc gtctgttcga attccaccgc cagaagattt aagacgccat ccttgatggc
     1621 cggatcaacg tgcttgcact tgcaagccag gacgcgttcg aagcgcagcg ccgagcggca
     1681 gcggcgattc tccgggacgg ggcctattgc ggcgagccaa tcgaaccggt cgagtcccag
     1741 caccaggcgc ttttcctggg ggcgccagtg aacgtcggcg accctgacaa cggcatcctg
     1801 caggtgggtg gaaacaacct cgagatcgtc cttgtcgagc gcgataaatt tcaacggctc
     1861 catagccgcc tccctgccgc cggtctgcca caactgccta cgtaggagac cgtgcacggc
     1921 tccgcaagcc ggtcttggcc attccggatg gcatacccct gtcagaaggc tacacaggca
     1981 gggcgcagga ggacggcgac cgactgctgc cggaaacgct gtttgtaggc ttgcgtgatc
     2041 gcagcaagcc ggtccaggtc ctcgccgttg ccaggcagca cgatctgcac gaccttgctc
     2101 gactcccgta ggatcgcgtt gcgggctgcg tcccgccact ggcccttcgc ctcgattacg
     2161 gtgaagccat ccgggaagcg cggcgtgatc tcgcgatcga caaaccgcgc ccatgcggcg
     2221 ttgctcacgc cgacgcgatc gccgaccttg cgcccgaaga acagctcagc cacctgctgc
     2281 ggcttgccga tgtgacactc gatcgcttgc gccttggcgc tgtcggagag acccgctgcg
     2341 gatacaagga tcagccaagc agcgactagg gcgttacgtc cggcccgacg catgcgtcac
     2401 ggtccggatc gtcagccgct gatgcgttca atcgcggcac cgcacgccgc aagcttgtcc
     2461 tcgagccgct cgaagccgcg gtcgagatga tacacgcggt tgaccatcgt ttcgccttcg
     2521 gccgcgagcg cggcgatcac aagcgagacg gaggcgcgca ggtcggtagc cattaccggt
     2581 gcccccttga gctttttcac cccttcgatt gtcgcgcatt cgccgttgag gtgaatgcgc
     2641 gcgccgagac gagcgagctc ctgcacatgc ataaatcgat tctcgaagat cgtttcggtg
     2701 atgtgcgagg tgcctctggc acgcgtcatc agcgccatga gttgtgcctg caggtcggtc
     2761 gggaagccgg ggaacggcgc cgtcgtcaca tcgatcggcg agataccgct gccattgcgc
     2821 gccactcgta tcccggtatt ggtctctgca atctccgcgc ccgcctcggc gagcacatcg
     2881 agcgccgcct gcaacaggtc cgcacgcgcg tgctcgagca gcacgtcccc gccggtcatc
     2941 gcgaccgcca tcgcataggt gcctgtttcg atccggtccg gcaggaccgc atggcgcgcg
     3001 ccgttcagcc gcgatacgcc ctcgaccacg atgcgcgagg tgcccgcgcc cgaaatctta
     3061 gcccccatct tgatcaggca gtcc
//
LOCUS       DASQVK010000066         2767 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_98979, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000066 DASQVK010000000
VERSION     DASQVK010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2767)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2767)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2767
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98979"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..820)
                     /locus_tag="VE567_01420"
     CDS             complement(<1..820)
                     /locus_tag="VE567_01420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HYZ47532.1"
                     /translation="MIASPAFAQTDSLRGDIAKDLPSLMAIYRDLHTNPELSTQEKRS
                     AAILAAEAKKAGFEVTTGVGGTGVVAVMKNGPGPVVMLRSDMDALPVAEQTGLPFASK
                     VKAVGTDGQETPVMHACGHDTHMSAWIGTARRMAAMKDRWSGTLIMIGQPAEEVNAGA
                     QAMLKDGLFTRFPKPQYVVGFHDSASLPAGVVGYTPGYAMAAVDSVDILVKGVGGHGA
                     APATTKDPIVLAARIVTALQTLVSRETDPLDSAVVTVGSFQAGTKHNVIPDEAKL"
     gene            complement(895..1524)
                     /locus_tag="VE567_01425"
     CDS             complement(895..1524)
                     /locus_tag="VE567_01425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003044281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4893 domain-containing protein"
                     /protein_id="HYZ47533.1"
                     /translation="MRRAVIVAVLALGACGQKAPLASAASGPPDWRQVATPADRARLR
                     EWRTAFVTGLDQARASGHAAEVAREGKLLEPDAGMAGGMPPAGDYRCRVIKLGSKGQS
                     GPGYVAYPEFGCRIDDEGGIRSFRKLTGSQRPVGVIMNDGGRQVFLGTMMLSDESRAL
                     FYGRDPDRDMIGAVERLGDGRWRMILPYPHYESVMDVMELVPAAAAPRS"
     gene            complement(1587..2372)
                     /locus_tag="VE567_01430"
     CDS             complement(1587..2372)
                     /locus_tag="VE567_01430"
                     /EC_number="1.1.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003858 - 3-hydroxybutyrate dehydrogenase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyrate dehydrogenase"
                     /protein_id="HYZ47534.1"
                     /translation="MFLKGKAAIVTGSTSGIGLAYAKALAAEGAAVMINGFGDAQAIE
                     AERANLATISGAEARYSAADMSKPDQIASMVKECADTLGSPDIVISNAGIQHVSPVEE
                     FPFEKWDAIIAINLSSTFHLMRAAVPYMKAKGWGRIISTASAHSLVASPNKSAYVAAK
                     HGLAGLTKTVALETAQHRITVNCISPGYVWTPLVENQIPDTMRTRGLTREQVINDVLL
                     DAQPTKQFVQPEQVAALAVFLCRDEAAQITGANLSVDGGWTAA"
     gene            complement(2381..>2767)
                     /locus_tag="VE567_01435"
     CDS             complement(2381..>2767)
                     /locus_tag="VE567_01435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3734 domain-containing protein"
                     /protein_id="HYZ47535.1"
                     /translation="TIMDVFAREKEIRYSSRTRQVSDQLLKLRKERRAIGRLLKKLPS
                     ELKDDPDAALLLETVEEQPVSVVHLIYRAANWEGGSRDYEFSERTMREHWAAGYAAVN
                     ESIANSALLARNIIDGKTAAFDLTRK"
BASE COUNT          460 a          908 c          896 g          503 t
ORIGIN      
        1 gcagcttcgc ctcgtcgggg atcacgttgt gcttggtgcc cgcctggaag ctgccgaccg
       61 tcaccaccgc gctgtcgagc ggatcggtct cgcggctcac cagcgtctgg agcgcggtca
      121 cgatccgcgc ggcgagcacg atcggatcct tggtcgtggc cggtgcggcg ccgtggccgc
      181 ccacgccctt caccagaatg tccaccgagt ccaccgcggc catcgcatag cccggcgtat
      241 agccgaccac gcccgcaggc agcgacgccg agtcgtgaaa gccaacgaca tattgcggct
      301 tgggaaagcg cgtgaagagc ccgtccttca gcattgcctg ggcgccggca ttcacttcct
      361 cggcgggctg gccgatcatg ataagcgtcc ccgaccagcg gtccttcatc gccgccattc
      421 gccgcgcggt gccgatccag gcagacatat gcgtgtcatg tccgcaggca tgcatcaccg
      481 gcgtttcctg gccgtcggtc ccgaccgcct tcaccttgct ggcaaagggc aggccggtct
      541 gctcagccac cgggagcgcg tccatatcgg agcgcagcat cactaccgga ccggggccgt
      601 tcttcatcac cgcgaccacg cccgtgccgc cgacgccggt cgtcacctcg aatccggcct
      661 tcttcgcttc ggcggcaagg atcgcggccg agcgcttctc ctgggtcgac agctccgggt
      721 tcgtgtgaag atcgcgatag atggccatca gcgacggaag gtccttcgcg atatcgccgc
      781 ggaggctgtc ggtctgagca aaagcggggc tggcgatcat aagcggcaga gcaagaatga
      841 ggcggcgcac aggcgactcc ggtggaggac aggacttctt agaccgaatg gcggtcagga
      901 gcgaggtgcg gcggcggcgg gcaccaattc catcacgtcc atgacgcttt cgtaatgcgg
      961 gtaggggagg atcattcgcc agcgaccgtc gcccagccgt tccacggcgc cgatcatgtc
     1021 gcggtccggg tcgcggccat aaaagagcgc gcggctttca tcgctgagca tcatcgtgcc
     1081 gagaaagact tgccggccgc catcgttcat gatcacgccg accgggcgct gcgatccggt
     1141 cagcttgcga aagctcctga tcccgccttc gtcatcgatc cggcagccaa attccggata
     1201 ggcgacatag ccgggcccgc tttggccctt ggagcccaat tttataacgc ggcatcgata
     1261 atcgccggcg ggcggcatgc cgcccgccat gccggcatcg ggctcgagca gcttcccttc
     1321 gcgcgcgact tcggccgcgt gcccgctggc ccgcgcctga tcgaggccgg tgacgaaggc
     1381 agtacgccat tcgcgcagtc gcgcgcgatc cgccggggtc gcgacctggc gccagtcggg
     1441 cggacccgac gcggcgctcg cgagcggcgc tttctgcccg caagcgccga gcgccagcac
     1501 ggcgacgatg acagctcttc tcatgcgacc ctctcgttcg gccgcagctt atcgaagccg
     1561 aacgcgcgcg ccagcccgaa atgtcgttac gcggccgtcc agccgccatc aaccgagagg
     1621 ttggcgcccg tgatctgcgc ggcttcgtcg cggcagagga agacggcgag cgcggcgact
     1681 tgctccggtt gaacgaattg cttggtcggc tgagcgtcga gcagcacgtc gttgatcacc
     1741 tgctcgcggg tcaggccgcg agtgcgcatc gtatccggga tttggttttc gacgagcggg
     1801 gtccagacat agcctgggct gatgcaattg accgtgatgc ggtgctgcgc cgtctccagc
     1861 gccacggttt tggtgaggcc ggccagcccg tgcttcgccg cgacataggc cgacttgttc
     1921 gggctcgcga ccagcgagtg ggcggaggca gtggagatga tccgccccca tcccttggcc
     1981 ttcatgtacg gcaccgccgc gcgcatgagg tggaaagtgg aggagagatt gatcgcgatg
     2041 attgcgtccc acttctcaaa ggggaattcc tcgaccgggg agacgtgctg gatgccggca
     2101 ttgctgatca cgatatcggg actgccaagg gtatcggcac attccttgac catcgacgcg
     2161 atctggtcgg gcttgctcat gtcggcggcc gaatagcgcg cctccgcgcc gctgatcgtc
     2221 gccagattcg cgcgttccgc ctcgatcgcc tgcgcgtcgc cgaaaccatt gatcatcacc
     2281 gccgcaccct cggccgcgag cgccttggca taagcaagcc cgatgccgga agtggagccg
     2341 gtgacgatcg cggccttgcc tttgaggaac atgggaactc ctatttgcgg gtgaggtcga
     2401 aggcggcggt cttgccgtcg atgatgttgc gggcgagcag cgcggaattg gcaatcgact
     2461 cgttcactgc ggcatagcct gccgcccaat gctcacgcat cgtgcgttcg gagaattcat
     2521 agtcgcgcga gccgccttcc caattcgccg cgcgatagat tagatgcacg acactgaccg
     2581 gctgctcctc gacagtctca agcaaaagcg cggcgtcggg atcgtccttc agttcggagg
     2641 gaagcttttt cagcagccgg ccgatcgcac gccgttcctt gcgcagcttg agcaattgat
     2701 cgctgacttg gcgcgtgcgg ctcgaatagc ggatttcctt ttcccgcgcg aacacgtcca
     2761 tgatcgt
//
LOCUS       DASQVK010000067         4474 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_257106,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000067 DASQVK010000000
VERSION     DASQVK010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4474)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4474)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4474
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257106"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            76..1656
                     /gene="serA"
                     /locus_tag="VE567_01440"
     CDS             76..1656
                     /gene="serA"
                     /locus_tag="VE567_01440"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020820252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004617 - phosphoglycerate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HYZ47536.1"
                     /translation="MPKVLISDKMDPRAAAIFRERGLEVDEKPGLTKEELIAIIGDYD
                     GLAIRSATKAGRDVLAAATNLKVIGRAGIGVDNVDVPAASARGVVVMNTPFGNSITTA
                     EHAIALMFALARDIPEADRSTQQGKWEKNRFMGVELSGKTLGLIGCGNIGSIVADRAI
                     GLKMRVVAYDPFLSVERARELGVEKATLDELLARADFITLHTPLTDQTRNILSRENIA
                     KTKKGVRIINCARGGLVDEAALKEALDSGHVAGAALDVFVEEPAKESPLFGTPGFIST
                     PHLGASTSEAQVNVAIQVAEQMSDFLLTGAVTNALNMPSVSAEEAPRLRPYMTLAEKL
                     GSLVGQLAHDGLTQIDIEVEGAAAELNQKPITGAVLAGLMRVYSDTVNMVNAPFLAKE
                     RGLDVREVRHDREGDYHTLVRVSVATSEGERSVAGTLFGDQNPRLIELFGIKVEADLA
                     GHMLYVVNEDAPGFIGRIGTALGNAGVNIGTFHLGRRDAGGEAVLLLSVDSQVPEPLL
                     WELCRLPGVKKVKALQFA"
     gene            1748..2854
                     /locus_tag="VE567_01445"
     CDS             1748..2854
                     /locus_tag="VE567_01445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016746511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HYZ47537.1"
                     /translation="MTTGLLPEGLRDRLPPQADAAAAILRAALDAVRAHGYERVAPPL
                     AEYEESLVGRLKAGTARDLLRVVDPLSQRTLALRPDITTQVGRIAATRLAHRPRPLRL
                     SYGGPVVKLRASQLRPEREMTQIGAELIGRDSAAAAAEIVALSVEALAAAGARGITVD
                     LTLPDLVETLAAGALPLGPPETAQVRALLDAKDAGGLAALGASAYLPLIEAAGPFAEA
                     IQRLRAFDSGGALASRLAALETVAARLEGVATVTLDPTERHGFEYQSWLGFSLFAQGL
                     AGEIGRGGSYTILHEDGREEPAVGFSIYPDPLLDVLAPEAAVRRLFLPLGHDPAAAAA
                     LRAQGWVTVAALDDSCSDAGCTHILVGQSATALT"
     gene            complement(2847..3713)
                     /locus_tag="VE567_01450"
     CDS             complement(2847..3713)
                     /locus_tag="VE567_01450"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYZ47538.1"
                     /translation="MALLAAATPAIMEQAGPHVLVGGSMATQTLSYGADPKQTVTLFT
                     REKAARPPLIVYLHGGGWSAGTPKAGYGGRQAEHWTSRGYAYAATGYRFVPAATVEQQ
                     LSDAAKAIALLRKQKGLDPDRIVLLGHSSGGHLAAMLGADPAWLEKAGVPFGAVKAVV
                     LLDPAGLDIPPIMAIRGDGTIERYYRPAFGDDPARQSTLSPMKQTEPPNAPAWLMLHD
                     ANNPYAGAQSADLAAALKGAGAREATVQAIAGTTHLRLNDEIGQPGNEATGLIEAFLA
                     RALPENQRRRVR"
     gene            3817..>4474
                     /locus_tag="VE567_01455"
     CDS             3817..>4474
                     /locus_tag="VE567_01455"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007685463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthetase"
                     /protein_id="HYZ47539.1"
                     /translation="MANVTVIGAQWGDEGKGKIVDWLAERADMVVRFQGGHNAGHTLV
                     IGNQTYKLSLLPSGIVRGTPSVIGNGVVLDPWALKAEVEKLREQGVTVTPQTLSIADN
                     CPLILPFHRDLDALREDASGAGKIGTTRRGIGPAYEDKVGRRAIRVCDLAHLEGLGPQ
                     LDRLTAHHDALRAGFGEPPIDREQLLAQLREVADFVLQFAKPVWLDLNEARARGRRIL
                     F"
BASE COUNT          698 a         1570 c         1470 g          736 t
ORIGIN      
        1 tccccttcac tctcccggcg ttgacgcgcc gggcccctcc ctctcccgca aacggagagg
       61 ggcaggagac cgaaaatgcc caaagtcctg atttccgaca aaatggaccc tcgcgccgcg
      121 gcaattttcc gcgagcgcgg cctcgaagtc gatgaaaagc ccggcctcac caaggaagag
      181 ctgatcgcga tcatcggcga ttatgatggc cttgccatcc gctccgccac caaggccggc
      241 cgcgacgtgc tcgcggccgc tacgaatctc aaggtcatcg gccgggccgg catcggcgtc
      301 gacaatgtcg acgtgcccgc ggcgtcggcg cgcggcgtcg ttgtgatgaa cacgccgttc
      361 ggcaacagca tcaccaccgc cgaacatgcg attgcgctga tgttcgcgct cgcccgcgac
      421 atccccgagg ccgaccgctc gacccaacag ggcaagtggg aaaagaaccg cttcatgggc
      481 gtcgaactgt ccggcaagac gctgggtctg atcggctgcg ggaatatcgg ctcgatcgtc
      541 gccgaccgcg cgatcgggct caagatgcgc gtcgtcgcct atgacccctt tctctcggtc
      601 gagcgcgccc gcgagctggg agtcgagaaa gcgacgttgg acgagctgct cgcccgcgcc
      661 gatttcatca cgctgcacac ccctctgacc gaccagaccc gcaatatcct cagccgcgag
      721 aacatcgcca agacgaagaa aggcgtgcgc atcatcaact gcgcgcgcgg cggcctggtc
      781 gacgaagcgg cgctgaagga ggcgctcgat tccggccatg tcgcaggtgc tgcgctcgac
      841 gtgttcgtgg aagagccggc caaggagtcg ccgctgttcg gcacgcccgg cttcatctcg
      901 acgccgcatc tgggcgcttc caccagcgag gcgcaggtca atgtcgcgat ccaggtggcc
      961 gagcagatgt cggacttcct gctgacgggc gccgtcacca atgcgctcaa catgccgtcg
     1021 gtctcggccg aggaagcgcc gcggctgcgc ccctatatga cgctggcaga aaagctggga
     1081 tcgctcgtcg gccagctcgc ccatgacggc ctcacgcaaa tcgatatcga ggtcgaaggg
     1141 gccgccgccg agctcaacca gaagccgatc accggcgcgg tgctggccgg gctgatgcgc
     1201 gtctattcgg acacggtgaa catggtgaac gcgccgttcc tggccaagga acgcgggctc
     1261 gacgtgcggg aggtgcggca cgaccgcgag ggcgattacc acacgctcgt gcgcgtctcc
     1321 gtcgcgacgt ccgaaggcga gcgctcggtc gccggcactt tgttcggcga ccagaacccg
     1381 cgcctgatcg agctgttcgg gatcaaggtg gaggccgatc tcgccggcca catgctctat
     1441 gtggtgaacg aggacgcgcc gggctttatc ggccgcatcg gcacggcgct gggcaatgcc
     1501 ggcgtcaata tcgggacttt ccatctcggg cgccgcgatg ccgggggcga ggcggtgctg
     1561 ctgctctccg tcgactcgca ggtgcccgag cctttgctgt gggagctgtg ccgcctgccc
     1621 ggcgtcaaga aggtcaaggc gctccaattc gcctgagccg ctttcctccg ttcggttcga
     1681 gcgaagtcga gaggcgcaag ctctgcgctc gaatcgaacg gagtttcgca ttaggggctg
     1741 aatcccgatg accaccggcc tccttcccga aggcttgcgc gatcggctgc caccccaggc
     1801 cgacgcggca gccgccatcc tgcgagcggc gctcgatgcc gtccgcgcgc atggctatga
     1861 gcgcgtcgcg ccgccgctcg cagagtatga ggagtcgctg gtcggccggc tgaaagcggg
     1921 cacggcgcgc gacttgctgc gcgtggtcga cccgctctcc cagcgcaccc tggcgctcag
     1981 gccggacatt acgacgcagg tcggccgaat cgccgcgacc cggcttgccc atcgcccgcg
     2041 ccccttacgc ctcagctatg gcggcccggt cgtgaagctg cgcgcctcgc aactccggcc
     2101 cgaacgcgaa atgacgcaga tcggcgccga gctgatcggc cgcgacagcg ccgctgcggc
     2161 ggcggaaatc gtggcactct cggtcgaggc gctggccgcg gccggcgcca ggggcatcac
     2221 cgtcgacctg accctccccg atctggtcga aacgctcgcg gccggcgcgc tgccccttgg
     2281 cccccccgaa acggcgcagg tccgcgcgct gctggatgca aaggatgcgg gcggcctcgc
     2341 ggcgctcggg gccagcgcgt acctgccgct gatcgaagcg gcgggccctt ttgccgaagc
     2401 gatccagcgc ctgcgcgcct tcgacagcgg tggcgctctc gcctctcggc ttgcggcgct
     2461 ggaaaccgtc gccgcacggc tggagggcgt cgccacggtc acgctcgacc ccactgagcg
     2521 ccacggcttc gaatatcaaa gctggctcgg cttctcgctg ttcgcgcaag gcctggcggg
     2581 cgaaatcggc cgcggcggca gctacacgat cctgcacgaa gatggccgcg aggagccggc
     2641 ggtcggtttc tcgatctacc ccgacccgct gctcgacgtg ctcgcccccg aggcagcggt
     2701 ccgccgcctc ttcctcccgc tcggccacga cccggcggcc gcggccgcgt tgcgcgcgca
     2761 aggctgggtc acggtcgcgg cgctggacga cagctgcagc gacgctggct gcacgcatat
     2821 attggtcggt cagagcgcaa cggcgctcac ctgactctcc gccgctgatt ctccggtaga
     2881 gcgcgcgcga gaaaggcctc gatcaggccc gtggcttcgt tccccggctg gccgatctcg
     2941 tcgttcagcc gcaggtgcgt ggtgccggcg atcgcctgca ccgtcgcttc cctcgcgcct
     3001 gcccccttca gggcggcggc taaatcggcg ctttgcgcgc ccgcgtacgg attgttcgcg
     3061 tcgtggagca tcagccaggc gggcgcgttg ggcggctccg tctgcttcat cggggacagc
     3121 gtcgactgcc gcgccggatc gtcgccaaag gccggacgat aatagcgctc gatggtgccg
     3181 tcgccgcgta ttgccatgat cggcggaatg tcgagccctg cggggtcgag cagcaccacg
     3241 gccttgaccg caccgaacgg cacgcccgct ttctccagcc acgccggatc ggcgccgagc
     3301 atcgccgcga ggtggccgcc cgaactgtga ccgagcagca cgatccggtc cgggtccagg
     3361 cccttctgct tccgcagcaa ggcaatggct ttcgccgcat cgcttaattg ctgctcgacc
     3421 gtcgcggcgg gcacgaagcg gtagcccgtc gcagcatagg catagccgcg gcttgtccaa
     3481 tgctccgcct gtcgtccgcc atagcccgct tttggcgttc ccgcgctcca cccgccgccg
     3541 tgcagataga cgatcagcgg cgggcgcgcc gccttttcgc gcgtaaacag cgtgacggtc
     3601 tgtttcgggt ccgcgccata gctgagcgtc tgcgtcgcca tcgacccgcc gaccagcaca
     3661 tgcggccccg cctgctccat gattgccgga gtggccgccg ccaacagcgc cattgccaag
     3721 cctgccccca acatctctcc gcctttcatt ttccgctccg ggtgtggacc cgcccgcccg
     3781 gctccattag gcgatcctcg cacaaaggag tttgcattgg ccaacgttac cgtgatcggc
     3841 gcgcaatggg gcgacgaagg caagggcaag attgtcgact ggctcgccga gcgggcggat
     3901 atggtggtgc gtttccaggg cgggcacaat gccggccata cgctggtgat cggcaaccag
     3961 acctacaagc tctcgctgct cccctcgggt atcgtgcgcg gcacgccgtc ggtgatcggc
     4021 aatggcgtcg tgctcgaccc ctgggcgctg aaggccgaag tcgagaaatt gcgcgagcag
     4081 ggtgtgacgg taacgccgca aacgctctcc atcgccgata attgcccgct gatcctgcct
     4141 ttccaccgcg atctcgatgc gctgcgcgaa gatgcgagcg gcgccggcaa gatcgggacg
     4201 acacggcgcg gcattgggcc cgcctatgaa gacaaggtcg ggcgccgtgc gattcgcgtg
     4261 tgcgaccttg ctcatctcga ggggctcggg ccgcagctcg atcgcctgac cgctcatcac
     4321 gatgccctgc gcgccggctt tggcgagccg ccgatcgatc gcgagcaatt gcttgcccag
     4381 ctccgcgaag tcgccgattt cgtgctgcaa ttcgccaagc ccgtctggct ggacctcaac
     4441 gaggcgcggg cgcgcgggcg ccgcattctg ttcg
//
LOCUS       DASQVK010000068         2059 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_162149,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000068 DASQVK010000000
VERSION     DASQVK010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2059
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162149"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1232)
                     /locus_tag="VE567_01460"
     CDS             complement(<1..1232)
                     /locus_tag="VE567_01460"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HYZ47540.1"
                     /translation="MRYDHDWDPRHDALEPLPPFAPLPPEAEDAEPLPPRRRWLKKRY
                     IAAGIVGLFMLLVGWLAVTAPLNRSLQPIAPPSITLVASDGTPIARKGAIVAQPVTLS
                     ELPAHVPQAFIAIEDRRYYSHWGVDPIGIARAAWRNLLAGGVREGGSTITQQLAKGVF
                     LSNDRSFGRKGREMLIAFWLEAWLTKQEILERYLSAVYFGDNVYGLRAAAQHYFSREP
                     EELTLGQAALLAGLVKAPSRLAPTRNLGGARARERVVLQAMAEAGFITPAQARRQPSV
                     RLKVRREANMPTGTYFADWVMPAARDPAGAVYERQEIQTTLDARLQKLAEATVRRGAI
                     HGAQIALVAMRPDGRVVAMVGGRSYKDSPFNRVTQARRQPGSTFKLFVYLAAMRAGMR
                     PEDTIEDAPLRIGKWQPK"
     gene            complement(1330..1752)
                     /gene="ndk"
                     /locus_tag="VE567_01465"
     CDS             complement(1330..1752)
                     /gene="ndk"
                     /locus_tag="VE567_01465"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011542052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HYZ47541.1"
                     /translation="MAVTRTFSIIKPDATRRNLTGAVTKMLEEAGLRVVASKRIRMTK
                     EQAEGFYGIHRERPFFNDLVGFMTSGPVVVQVLEGEDAVKRNRDIMGATNPDNAEPGT
                     IRKELAESIEANTVHGSDSDENAATEIAFFFKPEEIVG"
BASE COUNT          331 a          669 c          713 g          346 t
ORIGIN      
        1 ttcttcggct gccatttgcc gatgcgcagc ggcgcgtcct cgatcgtgtc ctcggggcgc
       61 atgccggcgc gcatcgcggc gaggtagacg aacagcttga aggtcgagcc gggctggcga
      121 cgcgcctgag tgacgcggtt gaacgggcta tccttgtagc tgcggcctcc gaccatggcg
      181 accacgcggc cgtccgggcg catcgccacc agcgcgatct gcgcgccgtg gatcgcgccg
      241 cgacggaccg tggcttcggc cagcttttgc agccgcgcgt cgagcgtggt ctgaatctcc
      301 tggcgctcat agacggcgcc ggccgggtct cgcgcggcag gcatgaccca atccgcgaaa
      361 taagtgccgg tgggcatgtt tgcttcgcgc cggaccttca ggcggacgga gggctggcgg
      421 cgcgcctgcg ccggggtgat gaacccagcc tcggccatcg cctgcagcac cacccgctcc
      481 cgcgcccgcg cgccgccgag attgcgtgtc ggggcaaggc gcgacggggc cttgacgagc
      541 ccggcgagca aagccgcctg gccgagcgtc agttcctcgg gctcgcggct gaaataatgc
      601 tgggcggccg cgcgcaggcc atagacattg tcgccgaaat agacggccga cagatagcgc
      661 tcgagaatct cctgcttggt gagccacgcc tccagccaga aggcgatcag catctcgcgg
      721 cccttgcggc cgaagctgcg gtcgttcgac aggaacacgc ccttggcgag ctgctgggtg
      781 atcgtgctgc cgccctcgcg cacgccgccg gcgagcaggt tgcgccaggc cgcacgggcg
      841 atgccgatcg ggtcgactcc ccaatggctg taatagcgcc gatcctcgat cgcgatgaag
      901 gcttgaggga cgtgggcggg cagctcgctc aacgtcaccg gctgagcgac gatcgcgccc
      961 ttgcgcgcga tgggtgtgcc gtcgctggcg accagagtga tgctgggcgg cgcgatcggc
     1021 tgcagcgaac gattgagcgg cgcggtgacc gcgagccagc cgaccagcag catgaagagg
     1081 ccaacaatgc ccgccgcgat gtagcgcttc ttgagccagc gccgccgcgg cggcagcggc
     1141 tctgcgtctt cggcctcggg cggcagcggc gcgaacggcg gcaaaggctc gagcgcgtcg
     1201 tgccgcgggt cccaatcatg gtcgtagcgc atgcgcccgt cggtcacagg agaatcctgc
     1261 tgtgtcttat ggcgctacta cagtgaatga aggctgacgg gaagggcctc gccctccccg
     1321 cttgcaaaat cagccgacaa tctcttccgg cttgaagaag aaggcgatct cggtcgcagc
     1381 attctcgtcc gaatcggagc cgtggacagt gttcgcctcg atcgattcgg ccagctcctt
     1441 gcggatcgtg cccggctcgg cattgtcggg gttggtcgcg cccatgatgt cgcggttgcg
     1501 cttcacggcg tcttcgcctt cgagcacctg gaccaccacc ggaccggagg tcatgaagcc
     1561 gaccagatcg ttgaagaacg ggcgttcccg gtggatgccg taaaagcctt ccgcctgctc
     1621 cttggtcatg cggatgcgct tggaggcgac gacgcgcagc cccgcctctt ccagcatctt
     1681 ggtgactgcg ccggtcaggt tgcgccgggt ggcgtcgggc ttgatgatcg agaaggtgcg
     1741 cgtgacggcc atggccgagg ggctccatat gttgcgttgt cggaaagtgc gcgcccgtta
     1801 accggggaga gcgcaagagg caactccctc ggcgcaaatc acaccactgc tcgacgcacc
     1861 gaaccggctg cccgtggtcc tgaaatccct gctgtcatcc cgaacttgtt tcgggacaag
     1921 cgcgagagcg aagagcggtt ggggaaaggc cggcgcctcc aagcctactc cctgaagcgg
     1981 agctgcccca cccttgtccc gaaacaagtt cgggatgacg ggccgcgttt gccgagcggc
     2041 aagctgcgtt tggggatcg
//
LOCUS       DASQVK010000069         3996 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_4311, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000069 DASQVK010000000
VERSION     DASQVK010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3996)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3996)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3996
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4311"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..505)
                     /locus_tag="VE567_01470"
     CDS             complement(<1..505)
                     /locus_tag="VE567_01470"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010403271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HYZ47542.1"
                     /translation="MTSRFDKNKLPSRHVSVGPERAPHRSYYYAMGLSDEEIARPFVG
                     IASAGNDSAPCNTTLDAQADAARAGVEAGGGMPRRFNTITVTDGIAMGHQGMKSSLIS
                     REVIADSVELSVRGHCYDALLGFAGCDKSLPGMMMAMLRLNVPSVFVYGGSILPGSFH
                     GRDVTGVD"
     gene            complement(515..1264)
                     /locus_tag="VE567_01475"
     CDS             complement(515..1264)
                     /locus_tag="VE567_01475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-formylglutamate amidohydrolase"
                     /protein_id="HYZ47543.1"
                     /translation="MKEAFDIVRGDSATGLLVVVDHASCHVPPDIELGIDPALVRRHI
                     GWDLGAADLARSLCKRLGCPGLFGGISRLVIDLHREDDSPGLIPALSDGHRIPGNEAL
                     DAAGREARLARFWRPYHARLADLVAEGRPQLIAAIHSFTPRLETADGPTRPWQVGILY
                     NGDDRAARVAIDLLRAMGFETGDNEPYSGTLLNATMNMHAEARGIPYLAIEVRNDLIG
                     DPAGVERWAETLERVIVKCRNKLAQNGSVRT"
     gene            complement(1514..2338)
                     /locus_tag="VE567_01480"
     CDS             complement(1514..2338)
                     /locus_tag="VE567_01480"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010217299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050515 - 4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HYZ47544.1"
                     /translation="MTLTEVAPAKINLALHVRERMADGYHRIETIFAFARDGDRLSAA
                     PADALALHIEGPFAAGLSAGSDNLVLRAAEALRQASGTRAGASLRLEKNLPVAAGIGG
                     GSADAAATLRLLLRLWKGGVPLEPIARSLGADVPACLVGRPVRGEGRGDALTEVDAQR
                     LSGMPLLLVNPGVAMPTGPVFAGWDGIDRGPLPGGDPLAAALAGRNDLEAPAVALAPA
                     IGELVAWLGRQPGVVLARMSGSGATCFALFETSEGLARAANAARNRWAWCLATALA"
     gene            complement(2346..>3996)
                     /locus_tag="VE567_01485"
     CDS             complement(2346..>3996)
                     /locus_tag="VE567_01485"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYZ47545.1"
                     /translation="LAAALLTPVAAEAKRTATTEAPSLLAAYARARLAGSDGAFDQAA
                     RAYAVVLAARPDDAAVAARAYRQALTAGDFPLALKAATALNKAGAMPADGQLLFLANA
                     IRAKDWGAAGTALEALGKDGSFDFMMPVLRAWVAQGSRAGDALAILDAPNGSALTSAL
                     ASEQRALLLIAAGKLDDAATIAQAQALAAGGGSASLKLAVASKLQAMGRQDAALSLLR
                     SDEPVIAAARGLVEAGKPLKVGSLDAAGGISALLVRVGEAIQSDPRSPVGLTMARLAT
                     WLDPSNDNATLMLARLLANAGQPDQALATAAKVGPASPYAAAAIDTRVAILTELGRRD
                     EALALAMTKSAGPDATLADIVRAGDLLSALERHAEAAKLYDRAIALAERSPELADRLW
                     SLWLLKGGAEERGGNWAAAKPALEKAVALSPLQPVALNYLGYAQLERRENVKNALALI
                     ERASQLKPDDPAITDSLGWAHYLVGDVTKAIPTLEKAVQGQPGDPTINEHLGDAYWAV
                     GRKYEARYAWSAAAVFADTADVAARARAKVEQGFSPSLAAR"
BASE COUNT          639 a         1401 c         1368 g          588 t
ORIGIN      
        1 cgtccacccc cgtaacgtcg cgaccgtgaa agctgcctgg cagaatcgag ccgccataga
       61 cgaacacgct gggaacgttc aggcgcagca tcgccatcat catgccgggc agcgacttgt
      121 cgcagccggc aaagcccagc agtgcatcgt agcaatggcc gcgcacgctg agctcgaccg
      181 aatcggcgat cacttcgcgg ctgataagcg aggacttcat gccctggtgg cccatcgcga
      241 tgccgtcggt gacggtgatc gtgttgaacc ggcgcggcat gccgccgccc gcttccacgc
      301 cggcgcgcgc ggcgtcggcc tgagcgtcga gcgtggtatt gcacggcgcg ctgtcgttcc
      361 cggccgaggc gatgccgaca aaggggcggg cgatttcctc gtcgctcagc cccatggcgt
      421 aataatagct gcgatgcggc gcgcgctccg gcccgaccga gacgtggcgc gaggggagct
      481 tgttcttgtc gaaacggctg gtcatccggc aagcctatgt ccgaaccgag ccgttttgcg
      541 caagcttgtt gcggcacttg acgataaccc gttcgagagt ctccgcccag cgctcgacgc
      601 cggccgggtc gccgatcagg tcgttgcgaa cctcgatcgc cagataggga atgccgcggg
      661 cctcggcatg catgttcatc gtcgcattga gcagcgtgcc cgaatagggc tcattgtcgc
      721 cggtctcgaa tcccatggcg cggagcagat cgatcgcaac gcgcgcggcg cggtcgtcgc
      781 cattgtagag gatcccgacc tgccaagggc gcgtggggcc gtccgccgtc tccagccgcg
      841 gcgtgaagct gtggatcgcc gcgatcaatt gcggccgacc ctcggcgacc aggtccgcca
      901 gccgcgcgtg atagggacgc cagaagcgcg ccagccgtgc ttccctgccc gcggcgtcga
      961 gcgcttcgtt gccgggaatg cgatggccgt cgctgagcgc cgggatcagg cccgggctgt
     1021 cgtcctcccg gtgcaggtcg atgacgaggc gcgagattcc gccgaacagg cccggacagc
     1081 cgagccgctt gcaaagcgag cgcgcgagat cggcggcgcc gaggtcccag ccgatatggc
     1141 ggcggaccag cgccggatcg atgccgagct cgatgtccgg cggtacatgg caggaagcat
     1201 ggtcgacaac gaccaacagc ccggtcgctg aatccccgcg cacgatatcg aaagcttcct
     1261 tcacgcccgc gctgctgccc cgacttgcgg gccaagtaaa ccggggaggt aggggagcga
     1321 acgcaacagg cgcccgctcc ccaggccgga tgcatgcgcg agatacgcag cgcatggacc
     1381 aggagacgga tgagcgatgc tggcgggcag gccgatccgt gcgccttcct accgcaaggg
     1441 gcatgccaac atctaagctg ttgattctaa ataggtcgaa gatgccggcc cgtcccaaat
     1501 gcggacgggc gggtcaggcg agtgccgttg cgagacacca ggcccagcgg ttccgcgctg
     1561 cgttcgccgc tcgcgcaagg ccttcagacg tctcgaacag tgcgaagcag gtcgcgcccg
     1621 agccggacat gcgggccagc acgacgccgg gctggcgacc gagccaggcg acgagttccc
     1681 caatcgcggg cgccagcgcg accgccggtg cttcaaggtc gttgcgaccg gcaagtgctg
     1741 ccgcaagggg atcgccgccg ggcagcggcc cgcggtcgat tccgtcccag ccggcaaaga
     1801 cgggaccggt cggcatcgcc acgccgggat tgaccagcag caaaggcatg ccgctcaggc
     1861 gctgcgcgtc gacttccgtc agcgcatcgc ctcgtccctc gccgcgtacc ggccggccca
     1921 caaggcatgc aggcacatcg gcgcccagcg agcgcgcgat cggctccagc ggcacgccgc
     1981 ccttccagag gcgcaaaagc agccgcagcg ttgccgccgc gtccgccgac ccgcctccaa
     2041 ttcccgccgc gaccggcaag ttcttctcga gccgcaggga ggcgccggcg cgagtcccgc
     2101 tcgcctgccg gagcgcctcg gcggcgcgta gcaccagatt gtcggatccc gcgctcaatc
     2161 ccgccgcaaa cggaccctcg atgtgcagcg ccagcgcgtc cgccggcgcc gcggaaagcc
     2221 ggtccccgtc gcgcgcaaag gcgaagatcg tctcgatccg gtgatacccg tccgccatcc
     2281 gctcgcgcac atgcagcgcg aggttgatct tcgcgggcgc gacttcggtc agggtcacgc
     2341 gaaggtcagc gcgccgccag cgagggggag aagccctgct ccactttcgc ccgcgcgcga
     2401 gccgcgacgt cggcggtgtc ggcgaagacc gcggccgcac tccacgcgta acgcgcttcg
     2461 tatttgcggc cgactgccca ataggcgtcg cccagatgct cgttgatcgt cggatcgccc
     2521 ggctgcccct ggaccgcctt ttcgagcgtc gggatggcct tggtcacatc gccgaccaga
     2581 taatgcgccc agccgagcga atcagtgatc gcgggatcgt cgggcttgag ctgactcgcg
     2641 cgctcgatca gcgcgagggc attcttcaca ttctcgcgcc gctcaagttg cgcatagccg
     2701 agataattga gggcaaccgg ttgcagcggc gagagcgcca ccgccttttc gagcgccggc
     2761 ttggccgccg cccaattgcc tccgcgctcc tccgcgccgc ctttcagcag ccacaggctc
     2821 cacagccggt cggccagctc gggcgagcgt tcggcaaggg cgatggcgcg atcgtaaagc
     2881 ttcgctgcct cggcatgccg ttcgagggcg gacagcaaat cacccgcgcg cacgatatct
     2941 gccagtgtcg cgtcggggcc ggcactcttc gtcatggcca gcgcgagcgc ttcgtcgcgg
     3001 cgtccgagtt cggtcaggat cgccacgcgt gtatcgatcg cggccgccgc ataggggctc
     3061 gccgggccga ctttggctgc ggtcgcgagc gcctggtcgg gctggccggc attggcgagc
     3121 aaacgcgcga gcattagcgt tgcattgtca ttgctggggt cgagccaggt cgcgagccgc
     3181 gccatggtga ggcctaccgg ggagcgcgga tcggactgga tcgcctcacc cacccgcacc
     3241 agcagcgccg aaatgccgcc ggcggcgtcc agcgaaccga ccttgagcgg cttgcccgct
     3301 tcgaccaagc cgcgcgcggc ggcgatcacc ggctcgtcgc tgcgcaacag gctcagcgcg
     3361 gcgtcctgcc gtcccatggc ctgcagcttc gaggcgacgg cgagcttcag cgaggccgag
     3421 ccgccgcccg ccgcgagcgc ctgcgcctgg gcgatcgtgg cggcatcgtc gagcttaccg
     3481 gcggcgataa ggagaagcgc acgctgttcc gatgccagtg ccgaagtcag cgcgctgccg
     3541 ttcggcgcgt cgaggatcgc aagcgcatcg ccggcacggc taccctgggc tacccaggcg
     3601 cgaagcacgg gcatcatgaa atcgaagctg ccgtccttgc cgagcgcttc gagcgcggtg
     3661 cccgccgcgc cccagtcctt ggcgcggatc gcattggcaa ggaagagcaa ttgcccgtcg
     3721 gccggcatcg cgccggcctt gttgagtgct gtcgcggctt tcagcgccag cggaaaatcg
     3781 cccgcggtca gcgcctggcg ataggcgcgc gctgccacgg cggcgtcgtc gggacgcgcc
     3841 gccagcacca ccgcataggc gcgcgccgcc tggtcgaaag cgccgtcgga gccggccagc
     3901 ctcgcgcgcg cataggcggc gagcaacgat ggcgcctccg tcgtagccgt ccgcttggct
     3961 tcggcagcga cgggggtcag cagcgccgcc gcgagc
//
LOCUS       DASQVK010000070         2633 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_257327,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000070 DASQVK010000000
VERSION     DASQVK010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2633
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257327"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            377..709
                     /locus_tag="VE567_01490"
     CDS             377..709
                     /locus_tag="VE567_01490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008065350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47546.1"
                     /translation="MFKSFGSLACAFIMTATLLPSTALADDPHDPTMRSAAARARDRA
                     IIKRMNQDQLAYVRRRDAERMQAFRDARAGHDARYADARAEYGRKMAAWRHAVAACNA
                     GRWEYCDR"
     gene            917..2281
                     /gene="der"
                     /locus_tag="VE567_01495"
     CDS             917..2281
                     /gene="der"
                     /locus_tag="VE567_01495"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HYZ47547.1"
                     /translation="MPRPLPTLAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRR
                     EGDAHLIGLDFRVIDTAGFEDEDPQTLPGRMRAQTEAAVREADVALFLIDARAGVVPL
                     DEEIARWLRAEDTPIVVAVNKAEGRAGEQGALEALALGLGEPVQISAEHGEGLADLFE
                     AILPYLDREEIDEEEEADEADPAAPLKLAIVGRPNAGKSTLVNRILGQERMITGPEAG
                     ITRDSIAIDMDWQGRPIRLIDTAGMRKRANVQDKLEKLSVADAKRAVDFAEVVVLLLD
                     ATRGLEAQDLRIADAVLQEGRALVIALNKWDVAENASALFNGVRAALEEGLSQVKGLP
                     VLTISAATGKGVDTLLKVAFETRDAWSRRVPTGELNRWFEAAVERNPPPAPGGKRIKP
                     RYLTQAKTRPPGFVLFGTRVDLLPESYRRYLINGIRRDLGFGAVPVRLTLRAPKNPFD
                     RDRK"
     gene            complement(2288..>2633)
                     /locus_tag="VE567_01500"
     CDS             complement(2288..>2633)
                     /locus_tag="VE567_01500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYZ47548.1"
                     /translation="VRAKIDWRISITGKALEKAVPAGVKIAFGTDAGVSKHGRNADEF
                     ELLVKHGMTPMGAIQAATVNAADLLGLADQIGTLEPGKRADLIAVAGDPLRDVTVLKS
                     VSFVMKDGKVVK"
BASE COUNT          440 a          911 c          844 g          438 t
ORIGIN      
        1 ctaaaccgat ccgaccgacg aggcggcggc ttcgccgtcg ccggtccaga tgcaaaaaaa
       61 cgggccggag agggcgatct ctccggccct ccctttttga ttgtccggat gtccgctgtc
      121 agtcgtctct gcctgtcctg cttcccatgg agcccaacga acctgccatc cgcggcctag
      181 cccgttgcgc gggaaatcag cggccaacct tttggacgat cctctccact gtcgcatcgt
      241 ccggtagcgg catgcgtaag acccgtcgca aaacaccggg ggtacatcct tatcctgccg
      301 tttccgctga aacggtcgtg aatgtttaac ctcctccgat gcaccttgcc cggaacagcc
      361 aaccccggaa gggcaaatgt tcaaaagttt cggttcgctt gcttgtgcgt tcatcatgac
      421 cgccacgctc ctcccctcaa cggcgcttgc ggacgatccg cacgatccca cgatgcgcag
      481 cgccgctgcg cgggcgcggg atcgggcgat catcaagcgg atgaaccagg accagctcgc
      541 ctatgtccgc cggcgcgatg ccgagcggat gcaggcgttc cgtgacgcgc gggccgggca
      601 cgacgcccgc tacgccgacg cccgcgccga atatgggcgc aagatggcgg cctggcgcca
      661 cgcggtcgcc gcgtgcaatg cgggccgctg ggaatattgc gacagataag ccggcgatca
      721 gagggccgat ttcgccgccc tacacccccg cccccgaaca aactctatta tttcacaagc
      781 gcaataatcg tgaagcgggg agcccgaccg gagttcgggt cgtcccttgg ccctcgcacg
      841 cggctttgcc tcgcctttgc ctgacctttg ggcgccgcat ttccctttcg cgccctcacg
      901 cgttaacgcc gcaccaatgc ctcgccccct tcccactctc gcaatcgtcg gccggcccaa
      961 tgtcggcaag tcgacgctgt tcaaccggct cgtaggcaag aagctggcgc tggtcgacga
     1021 cacgcccggc gtgacccgtg accggcgcga gggggatgcg catctgatcg gcctcgattt
     1081 ccgcgtgatc gacaccgccg gcttcgagga cgaggatccg cagacgctgc ccggccggat
     1141 gcgcgcccag accgaagcgg cggtgcgcga ggccgatgtc gcactgttcc tgatcgatgc
     1201 gcgcgccggc gtcgtgccgc tcgacgagga gatcgcccgc tggctgcgcg ccgaagacac
     1261 gccgatcgtg gtcgcggtca acaaggccga ggggcgggcg ggcgagcagg gcgcgctgga
     1321 ggcgctggcg ctcggcctgg gcgagccggt ccagatctcg gccgaacatg gcgagggctt
     1381 ggccgatctc ttcgaggcga tcctgcccta tctcgaccgc gaggagatcg acgaagaaga
     1441 ggaggccgac gaagccgatc cggccgcccc gctcaagctc gcgatcgtcg gccgcccgaa
     1501 cgcgggcaag tcgactctgg tcaatcgcat cctcggccag gagcggatga tcaccgggcc
     1561 cgaggcgggc atcacgcgcg actcgatcgc aatcgacatg gattggcaag ggcggccgat
     1621 ccgcctgatc gacacggccg gcatgcgcaa gcgcgccaat gtccaggata agctggagaa
     1681 attgtcggtc gccgacgcca agcgcgccgt cgatttcgcc gaggtcgtgg tgctgctgct
     1741 cgacgccact cgcggcctcg aagcgcagga cctgcgcatc gccgacgccg tgctgcagga
     1801 aggccgcgcc cttgtgatcg cgctcaacaa atgggatgtg gcggagaatg cctcggcgct
     1861 gttcaacggc gtgcgcgcag cgctggagga agggctttcc caggtgaagg gcctgcctgt
     1921 gctgaccatc tcggcggcga cggggaaggg cgtcgacact ttgctcaagg tcgcgttcga
     1981 aacgcgtgac gcctggtcgc gccgcgtgcc cacgggagag ctcaaccgct ggttcgaggc
     2041 cgcggtcgag agaaacccac cgcccgcccc cgggggcaag cggatcaagc cgcgctatct
     2101 cacccaggcc aaaacgcgcc cgcccggctt cgtgttgttc ggcacgcgcg tcgacctgct
     2161 gcccgaaagc tatcggcgct atctgatcaa cggcatccgc cgcgatctgg gcttcggcgc
     2221 cgtccccgtc cgcctgacgc tccgcgcgcc gaagaacccg ttcgatcgcg accgcaaata
     2281 ggcagggtta tttcacgacc ttaccgtcct tcatcacgaa ggacaccgac ttgagcaccg
     2341 tcacatcgcg gagcggatcg cctgccacgg cgatcaggtc ggcgcgcttg cccggttcca
     2401 gcgtgccgat ctggtcggcg aggccgagca gatccgcggc gttgaccgtt gccgcctgga
     2461 tcgcgcccat cggcgtcatg ccgtgcttca cgagcagctc gaattcgtcc gcattgcggc
     2521 catgtttgct cacgcccgcg tcggtgccga aggcgatctt gacgcctgcg ggcacggcct
     2581 tctccagcgc cttgccggtg atcgaaatgc gccagtcgat cttggcgcgc act
//
LOCUS       DASQVK010000071         4046 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_225765,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000071 DASQVK010000000
VERSION     DASQVK010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4046
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225765"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1260
                     /locus_tag="VE567_01505"
     CDS             <1..1260
                     /locus_tag="VE567_01505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HYZ47549.1"
                     /translation="HDALVEMLGADASELHLAVTPQAIVMLVGLQGSGKTTTTAKLAK
                     RLAERERKKVLMASLDVNRPAAQQQLATLGEQVKVATLPIVQGQPPVEIAKRALNAAK
                     LQGFDVLLLDTAGRLHVDQALMDEMKAVADVTRPQEILLVVDSLTGQDAINVATSFSE
                     QVPLTGVILTRMDGDARVGAALSMRAVTQKPIKFAGTGEKMDGLEGFHPERVAGRILG
                     MGDVVSLVEKAAETIQVEDAERLAAKMAKGQFDMDDLRAQLAQMRRMGGLGALAGMIP
                     GMKAAKQAMASGAVDEKILVRMDAMISSMTPKERSKPELLNAKRKIRVANGSGTTVQE
                     VNKLLKMHQEMANAMKKLKKMGGLKGLAAMFGKGGAGMGGMPGGMGDMLGGMKPPAGG
                     LPGLGGGAMPSLPGNLPPGFENFLKKK"
     gene            1285..1806
                     /gene="rpsP"
                     /locus_tag="VE567_01510"
     CDS             1285..1806
                     /gene="rpsP"
                     /locus_tag="VE567_01510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017665374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HYZ47550.1"
                     /translation="MALSLRLSRGGSKKRPYYRIVVADSRSPRDGRFIEKIGTYNPLL
                     AKDSPERIKLDADRAKHWLSVGAQPTDRVLRFLDVAGIKERPSRNNPKKAEPGEKAKE
                     RAEERAAKEAEAAEAAAAASAAAEVEEAPAADEAMSDATNEGASTEQPAEGDADAPTG
                     ADAPESTDQPAEG"
     gene            1925..2398
                     /gene="rimM"
                     /locus_tag="VE567_01515"
     CDS             1925..2398
                     /gene="rimM"
                     /locus_tag="VE567_01515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020819069.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HYZ47551.1"
                     /translation="MKRVTLAAIAGAHGLKGEVRLKLFTDSAEGLKRYESFDADGRTL
                     TLASVRQAGAGAIAKFREVPDRTAAEGLRGKALTVPREVLPPLEEGEYYHADLVGLTV
                     VTPAGDSVGTVAAVENFGAGDVLDIVRPGGKSFMAPMHAVTVEPERLVIDPAFIL"
     gene            2463..>4046
                     /locus_tag="VE567_01520"
     CDS             2463..>4046
                     /locus_tag="VE567_01520"
                     /EC_number="2.3.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004474 - malate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006097 - glyoxylate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malate synthase G"
                     /protein_id="HYZ47552.1"
                     /translation="MVDRVERSGLQVASVLARFIEEQALPGTGLEADAFWAGTAEIFA
                     RYVPENVMLLARRDAIQASLDDWHEERRGQPIDQAEYRQFLREIGYLVDEPAPFAVGT
                     DNVDDEIARMAGPQLVVPSLNARFLLNAANARWGSLYDALYGTDALPGAPKPGGYDPE
                     RGAQVVARARAFLDEALPGWEQALSGGTHPLLVGRRGESLLFRHNGLHVELVIDREHP
                     IGRDDPHGIADVVLEAALTTIVDMEDSVAAVDAEDKVAAYSNWLGVLRGDLADTFEKG
                     GRMITRRLNPDREYTAPDGSRFALPGRSLLFVRNVGHLMTTPAVLLPNGPEAPEGILD
                     AIVTSLCALHDLKGLGRLRNSRTGSIYIVKPKMHGPDEAGFTNRLFDAVEDLLGLARH
                     TIKVGVMDEERRTSANLAACIQAVRERIVFINTGFLDRTGDEIHTSMQAGPMIPKGEM
                     KSSTWIKAYEDRNVRIGLACGLSGKAQIGKGMWAAPDRMAEMMEQKIGHPKSGANTAW
                     VPSPTAATLHALHYHQVDVF"
BASE COUNT          745 a         1280 c         1406 g          615 t
ORIGIN      
        1 cacgatgcgt tggtcgagat gctcggtgcg gacgcaagcg aactgcacct cgccgtcacg
       61 ccacaagcaa tcgtgatgct ggtcggtctc cagggctcag gcaagacgac caccaccgcc
      121 aagctcgcca agcgcctcgc cgagcgcgag cggaagaaag tgctcatggc ctcgctggac
      181 gtgaatcgtc ccgccgccca gcagcagctc gcgactttgg gcgagcaggt gaaagtggcg
      241 acgctgccga tcgtccaggg ccagccgccg gtcgaaatcg ccaaacgggc gctcaatgcc
      301 gcgaagctcc agggcttcga cgtgctgctg ctcgacaccg ccggccggct gcacgtcgac
      361 caggcgctga tggacgaaat gaaggcggtg gcggacgtca cgcggccgca ggaaatcctc
      421 ctcgtcgtgg acagcctgac cggccaggac gcgatcaacg ttgcgacgag cttttccgag
      481 caggtgccgc tcaccggcgt gatcctgacc cggatggacg gcgatgcgcg cgtcggcgcg
      541 gcgctgtcga tgcgcgccgt cacgcaaaag ccgatcaaat ttgcgggcac cggcgagaag
      601 atggatgggt tggaaggttt ccacccggag cgcgtcgccg gccgcatcct cggcatgggc
      661 gacgtggtca gcctggtcga gaaggctgcg gagacgatcc aggtcgagga tgccgagcgg
      721 ctcgcggcca agatggccaa gggccagttc gacatggacg atctgcgcgc tcagctcgcc
      781 caaatgcggc gcatgggcgg actcggcgcg ctcgccggca tgattcccgg catgaaggcg
      841 gcaaagcagg cgatggcttc gggtgcagtc gacgagaaga tactggtgcg catggacgcg
      901 atgatttcct cgatgacgcc aaaggagcgc tccaagcccg agctgctcaa cgccaagcgc
      961 aagatccgcg tcgccaacgg ctccggcacg accgtgcagg aagtgaacaa gctgctgaag
     1021 atgcatcagg aaatggcgaa cgccatgaag aagctgaaga agatgggcgg gctgaagggc
     1081 ctggccgcga tgttcggcaa gggcggcgct ggaatgggcg gcatgcccgg cggcatgggc
     1141 gacatgttgg gcggcatgaa accgccggcg ggcggcctcc cgggcctggg cggcggggcg
     1201 atgccgtccc ttcctggcaa tctccctccg ggtttcgaaa atttcctcaa aaagaaatga
     1261 tctgacgaaa ggaacgacaa gactatggca ctttccctcc ggctttcccg cggtggctcc
     1321 aagaagcggc cttattaccg gatcgtggtg gcggactcgc gcagcccgcg cgacggccgc
     1381 ttcatcgaaa agatcggcac ctacaatccg ctgctcgcca aggattcgcc cgagcgcatc
     1441 aagctcgacg ccgaccgcgc caagcattgg ctgagcgtcg gtgcgcagcc gaccgaccgc
     1501 gtgctccgct tcctcgacgt ggcgggcatc aaggagcgtc cgtcgcgcaa caatccgaaa
     1561 aaggccgagc cgggcgagaa ggccaaggag cgcgccgagg agcgggccgc gaaggaagcc
     1621 gaagcggccg aagcagctgc cgccgcgagc gcggctgccg aagttgagga agccccggct
     1681 gccgacgagg caatgagcga cgcgaccaac gaaggcgctt cgaccgagca gccggccgag
     1741 ggcgatgccg acgccccgac cggagccgac gcgccggaat cgaccgacca gccggctgag
     1801 ggttgatttc ggctgatatg aaatcccgtt cgtttcgagt gcggttgaga aaggcttggc
     1861 ccgacgcggc tgcttctcga ctgcgctcga agcaaacgga gtctctctct gctgtttgtc
     1921 ttatatgaag cgcgtcactc tcgccgcgat tgcgggcgcg cacgggctga agggcgaggt
     1981 gcggctgaag ctcttcaccg acagcgccga gggcttgaag cggtatgaga gcttcgatgc
     2041 cgacggtcgg acgctgacgc ttgcctcggt gcgccaggcc ggggcagggg cgatcgctaa
     2101 attccgggaa gtgcccgatc gcaccgcggc ggaaggcttg cgcggcaagg cactgaccgt
     2161 cccccgcgag gtgctgccgc cgctcgagga aggcgaatat tatcacgccg acctggtcgg
     2221 cctgacggtg gtcacgccgg ccggtgattc ggtgggcacc gtcgcggcgg tcgagaattt
     2281 cggcgccggc gatgtgctcg acatcgtgcg gccgggtggc aagagcttca tggcgcccat
     2341 gcatgccgta acggtggagc ccgaacggct ggtgatcgac cccgccttca tcctttagcc
     2401 gcgttgacaa gcggcgcggc gctcgcccaa cggtgcaccg cacaattggg aggagatggc
     2461 gcgtggtcga tcgggtcgag cgttccgggc tgcaggtcgc gtccgtcctc gcgcgcttca
     2521 tcgaggagca ggcgctgccc ggcaccgggc tcgaggcgga tgccttctgg gccggcacgg
     2581 cggagatttt cgcgcgctac gtccccgaaa acgtgatgct gctcgcccgg cgcgacgcga
     2641 tccaggccag cctggacgat tggcacgaag agcgtcgagg ccagccgatc gaccaggccg
     2701 agtatcggca attcctgcgt gaaattggct atctggtgga cgagccggcg cctttcgcgg
     2761 tcggcacgga taatgtggat gacgagatcg cgcggatggc ggggccgcag cttgtcgtgc
     2821 catcgctgaa cgcccgtttc ctgctgaacg ccgcgaatgc gcggtggggc agcctttacg
     2881 acgcgcttta cggcaccgat gcgcttcccg gcgcgccgaa gccggggggc tatgatcccg
     2941 agcgtggagc gcaggtggtc gcgcgggcgc gagcctttct cgacgaggcg ctgccgggtt
     3001 gggaacaggc gctgagcggc ggtacgcatc cgctgctggt cggccggcgc ggggagtctc
     3061 tgctcttccg ccacaatggc ttgcacgtcg aacttgtgat cgaccgcgaa catccgatcg
     3121 gccgcgacga cccgcacggc atcgccgatg tggtgctgga agccgcgctc accacgatcg
     3181 tcgacatgga ggattcggtc gcggcagtcg acgccgagga caaggtcgcg gcctattcca
     3241 actggctcgg cgtgctccgc ggcgacctgg cggacacgtt cgagaagggc gggcgcatga
     3301 taacgcgccg cctcaatccg gaccgggaat acacagcgcc cgacgggtcg cgcttcgcgc
     3361 ttcccggccg cagcctgttg ttcgtccgca atgtcgggca tctgatgacc acgccggcgg
     3421 tgctgctacc caatggaccg gaagcgcccg agggcattct ggatgcgatc gtaaccagcc
     3481 tgtgcgcgct gcacgacctg aaagggctcg gccggttgcg caacagcagg accgggtcga
     3541 tctatatcgt gaagcccaaa atgcacgggc cggacgaagc gggcttcacc aatcgcctgt
     3601 tcgacgccgt cgaggacctg ctcggcctcg cccgccacac gatcaaggtt ggcgtgatgg
     3661 acgaggagcg gcggacctcg gccaatctcg ctgcatgcat ccaggcggtt cgcgagcgga
     3721 tcgtcttcat caacaccgga ttcctcgacc gcaccggtga cgagatccac acatcgatgc
     3781 aggccgggcc gatgatcccg aaaggcgaga tgaagtcgag cacctggatc aaggcctatg
     3841 aggaccgaaa tgtccgcatc ggcctggcgt gcggcctctc aggcaaggcg cagatcggca
     3901 aaggcatgtg ggcggccccc gaccgcatgg ccgagatgat ggagcagaag atcggccacc
     3961 cgaagagcgg cgccaacacc gcctgggtgc caagcccgac ggcggcgacg ctccacgcgc
     4021 tccattacca ccaggtggac gtgttc
//
LOCUS       DASQVK010000072         4086 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_162444,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000072 DASQVK010000000
VERSION     DASQVK010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4086
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162444"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..443)
                     /locus_tag="VE567_01525"
     CDS             complement(<1..443)
                     /locus_tag="VE567_01525"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HYZ47553.1"
                     /translation="MATLVTGAAGFIGYHLADRLLAAGERVIGVDNFVHYYLPQLKED
                     RVADLQRRHGDAFTLLRTDFADHAALDEALRPFSFERIAHLGAQPGVRYSIENPRAYA
                     HSNLVGHLNMLEVARARGVPMVYASSSSVYGGNESLPFRVEDRVDR"
     gene            complement(443..1366)
                     /locus_tag="VE567_01530"
     CDS             complement(443..1366)
                     /locus_tag="VE567_01530"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HYZ47554.1"
                     /translation="MDASNTRVLPISDAAIDEAARLILAGQPVAAPTETVYGLAADAT
                     NAEAVARIYVAKGRPSFNPLIVHVPYLEAAEQLAEFSPRARSLAERHWPGPLTLVLPK
                     RETASLPSIVTAGLPTVAIRVPRHPAMQALLRASERPLAAPSANASGSISPTRAEHVL
                     KSLKGRIPLILDGGPTSVGLESTIVAAADEQLRLLRPGPIDLNLPLETSGKVQAPGML
                     ARHYAPAKPLRLDVTEAQSDEYLIGFGHVAGDASLSPSGNLVEAAAELFDALHRADAS
                     HANAIAVAPIPAEGIGHAIRDRLRRAAQRED"
     gene            1410..3092
                     /locus_tag="VE567_01535"
     CDS             1410..3092
                     /locus_tag="VE567_01535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015456985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HYZ47555.1"
                     /translation="MTYTPPTAEQRFVLDHVVRIGELVDDADLVDAIVEGAGAFAAGE
                     YAPLSRIGDEVGALWEDGKVVMPEGFRAAYRAFVESGWGSINAPEAFGGQGLPFALAT
                     VAMEDLGTANMGFSLINMLTPGAIEALVSHGSPEQQATYLPKLVTGEWNGTMNLTEPQ
                     AGSDVGALRTTATPAADGSWRIKGTKIFITFGEHDLTDNIVHLVLARTPGAPGGTKGI
                     SLFLVPKYRLNADGSPGAFNDVRCVSIEHKLGIHASPTCTLSFGDQDDCHGWLIGEEM
                     GGMRAMFTMMNNARLNVGLQGVQVAERATQGALAYARERVQLGKPIVEHPDVRRMLTR
                     MRALTQGARALIYYAAGQVDRAHRGDAAAKARLDLLTPLAKAWGTDVGCEVASLGVQV
                     HGGMGFIEETGAAQHYRDIRIAPIYEGTNGIQAADLVNRKLPMQGGEVLASLLADIRA
                     EAGDEPALMDLVGRVESVARWMLGNEATPEDRLAGSYPLTTMLSVAVGGWLLARQARV
                     AATMEASPFMEMKQAVARFFLDRIVPEATGLEASARGGAALLYRLDAERLAA"
     gene            complement(3089..3847)
                     /locus_tag="VE567_01540"
     CDS             complement(3089..3847)
                     /locus_tag="VE567_01540"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007404611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HYZ47556.1"
                     /translation="MVLKLLRRAIEPAPPAARVPEGVRIYAIGDIHGRLDLLDALLSR
                     IEADDHARRPAKSELIFLGDLIDRGPDSAGVVQRAMDIRASGRPVHFLMGNHEEVFLK
                     ALGGSVEALRLFVKIGGRATILSYGFSEAEYDALCYETLLTALMERVPLTHIAFLKSF
                     EDRIAIGDYLFVHAGIRPGLPIEEQKGGDLRWIRTEFLDFRGDHGVVVVHGHTITDEV
                     EERPNRIGIDTGAFASGRLTALGLDGAERWYLST"
BASE COUNT          698 a         1296 c         1447 g          645 t
ORIGIN      
        1 cggtcgaccc ggtcctcgac ccggaagggc aggctctcgt tgccgccata gactgacgac
       61 gacgaggcat agaccatcgg cacgccgcgc gctcgggcga cctccagcat gttcaggtgc
      121 ccgaccaggt tggaatgcgc ataggcgcgc ggattctcga tcgagtagcg cacgccgggc
      181 tgcgcgccga gatgcgcgat gcgttcaaag ctgaaagggc ggagcgcctc gtccagcgcc
      241 gcatggtcgg cgaagtctgt gcgcagcagc gtgaaagcgt cgccatgccg ccgctgcaga
      301 tcggcgaccc ggtcctcctt cagctgcggc aggtaatagt gcacgaaatt atcgacgccg
      361 atcacgcgct cgccggccgc gagcagtcgg tcggcaagat gatagccgat gaacccggca
      421 gcgccggtga cgagcgtggc catcaatcct ccctctgcgc agcgcggcgg agccggtcgc
      481 ggatagcgtg cccgataccc tcggcgggga tcggcgcgac ggcaatggcg ttcgcgtgcg
      541 acgcgtcggc ccgatgcagc gcatcgaaga gttcggccgc cgcttcgaca aggttgcccg
      601 aggggcttag cgaggcgtct ccagccacgt ggccgaagcc gatcagatat tcgtccgact
      661 gcgcctccgt cacgtccagc cgcagcggct tggcgggggc atagtggcgc gcgagcatgc
      721 cgggcgcttg aaccttgccg ctggtttcga gaggcaggtt gagatcgatg gggccggggc
      781 ggagcaggcg cagttgctcg tccgccgcgg cgacgatggt ggattcgagg cccacgctgg
      841 tcggcccccc gtccaggatc agcggaatgc ggcccttgag gcttttcagc acgtgctcgg
      901 cgcgggttgg gctgatcgag ccgctggcgt tggccgacgg ggccgcgagc gggcgctcgc
      961 tggcgcggag cagggcctgc atcgcgggat ggcgaggtac gcggatcgcg acggtcggca
     1021 ggccggcggt gacgatggag gggagggagg cagtctcgcg cttcggcagc acgagcgtca
     1081 acgggccagg ccaatgtcgc tcggccagcg agcgggctcg aggcgaaaac tcggcaagct
     1141 gctcggctgc ctccaggtac ggcacatgga cgatcagagg attgaagctc ggccggccct
     1201 tggcgacgta gatgcgcgcg accgcctcgg cgttcgtcgc atcggcggcg aggccataga
     1261 ccgtttcagt cggcgctgcg accggctggc cggccaggat caggcgtgcc gcctcatcga
     1321 ttgccgcatc cgaaatgggc agcacgcgag tgtttgaggc gtccaccgcc ccgcgctata
     1381 gcgccgggcg ccgtttctca aggagcccca tgacctatac gcctcccact gccgaacagc
     1441 gcttcgtgct ggatcatgtg gtccgcatcg gcgagctcgt cgacgatgcc gatctggtcg
     1501 atgcgatcgt cgaaggcgca ggcgcgtttg ccgcgggcga atatgcgccc ttgagccgca
     1561 ttggcgacga agtcggcgcg ctttgggagg acggcaaggt ggtgatgccg gaaggcttcc
     1621 gcgccgccta ccgcgccttt gtcgaaagcg gctggggcag catcaacgcg ccggaggcgt
     1681 tcggcgggca gggcttgcct tttgccctcg cgaccgtggc gatggaggat cttggcacgg
     1741 cgaacatggg cttttccctg atcaacatgc tgacacccgg cgcgatcgaa gccctggtgt
     1801 cgcacggaag ccctgagcag caggccacct atctgccgaa gctggtcacc ggcgaatgga
     1861 acgggacgat gaacctgacc gagccgcagg ccggctccga cgtcggcgcg ctccgcacca
     1921 ccgccacacc cgccgcggac ggcagctggc ggatcaaggg cacgaagatc ttcatcacct
     1981 tcggcgagca tgacctgacc gacaacatcg tccacctggt gcttgcccgc acacccgggg
     2041 cgccgggcgg gaccaaaggc atttcgttgt tcctggtgcc caaataccgg ttgaatgcgg
     2101 acggctcgcc cggcgcgttc aacgacgtgc gctgcgtctc gatcgagcac aagctcggta
     2161 tccacgcatc gccgacctgt acgctgtcgt tcggcgatca ggacgattgc catggctggc
     2221 tgatcggcga ggaaatgggc ggcatgcgcg cgatgttcac gatgatgaac aacgcccggc
     2281 tgaacgtcgg cctgcagggc gtgcaggtgg cagagcgcgc cacccagggt gcgctcgcct
     2341 atgcacggga gcgggtacaa ctcggcaagc ccatcgtcga gcatccggac gtgcgccgaa
     2401 tgctgacgcg gatgcgcgcg ctgactcagg gcgcacgagc gctgatctat tacgcggcgg
     2461 ggcaggtgga tcgcgcgcat cggggcgatg cggcggcgaa ggcgcggctc gacctgctga
     2521 cgccgcttgc caaggcctgg ggcaccgacg tgggttgcga ggtcgcatcg cttggcgtgc
     2581 aggtgcatgg cggcatgggt tttatcgagg agacgggcgc cgcccagcac tatcgcgata
     2641 tccgcatcgc gccgatctac gaaggcacca atggcatcca ggcggccgac ctcgtcaacc
     2701 gcaagctgcc gatgcagggc ggggaggtgc tcgcctcgct gctggccgac attcgcgccg
     2761 aagcggggga tgagccggcg ctgatggacc ttgtgggccg ggttgagagc gtcgcccgct
     2821 ggatgctcgg caacgaagcg acgccggagg atcggctcgc cggcagctat ccgctgacga
     2881 cgatgctgtc cgttgcggtc ggcggctggc tgctggcccg tcaggcgcgc gtggccgcga
     2941 caatggaggc gtcaccgttc atggagatga agcaagccgt cgcacggttt ttcctcgacc
     3001 gcatcgtgcc ggaagcgacg gggctggaag cctctgcgcg cgggggcgcc gcgctgctct
     3061 acaggctcga cgcggagagg ctcgcggcct aggtcgacag ataccagcgc tcggcgccgt
     3121 cgaggccgag cgcggtcagg cggccgctgg caaaggcgcc ggtgtctatg ccgatgcggt
     3181 tcgggcgttc ctcgacctcg tcggtgatcg tgtggccatg gaccaccacc acgccgtggt
     3241 caccgcggaa atcgaggaac tcggtgcgaa tccagcgcag gtcgccgcct ttttgctcct
     3301 cgatcggcag gccgggacgg atgccggcgt ggacgaacag gtaatctccg atcgcgatcc
     3361 gatcctcgaa actcttcagg aacgcgatat gggtgagggg aacacgttcc atcagcgcgg
     3421 tcaggagcgt ttcgtagcag agcgcgtcat actcggcttc ggaaaagccg taactgagga
     3481 tcgtcgcgcg gccgccgatc ttcacgaaaa ggcgaagcgc ttccacgctt ccgcccagcg
     3541 ccttcaggaa aacctcctca tgattgccca tcaggaaatg cacgggacgg ccgctggcac
     3601 ggatgtccat ggcgcgctgc acgacgccgg ccgaatccgg gccacggtcg atcaggtcgc
     3661 caaggaaaat cagctcgctc ttggcgggac ggcgggcgtg atcgtccgct tcgatccggg
     3721 acaggagcgc gtcgagcagg tcgagccggc cgtgaatgtc gccgatcgcg tagatgcgca
     3781 ccccttccgg tacgcgggcg gcaggcggag caggctcgat ggcgcggcgg agaagcttga
     3841 ggaccattgg aaaatcggga cgctgacgaa cgcgactgag gggcgtcata tatatcaacg
     3901 gcgccttaac gccagcttga tcagccgatc gggggacccg aataagcaaa cagcgcactc
     3961 gcgccttgct cgaattcaat ctcggcgtcg tctgtcaccg accagcattg acccgctgta
     4021 aaaggttggc cgtcgatcct gcccgcgccg gtcaccggaa cgagccaagc tgtgcggcca
     4081 ccgagc
//
LOCUS       DASQVK010000073         3447 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_226022,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000073 DASQVK010000000
VERSION     DASQVK010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3447)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3447)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3447
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_226022"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1864)
                     /locus_tag="VE567_01545"
     CDS             complement(<1..1864)
                     /locus_tag="VE567_01545"
                     /inference="COORDINATES: protein motif:HMM:TIGR02226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BatA domain-containing protein"
                     /protein_id="HYZ47557.1"
                     /translation="MIAGLPLSFAEPMLLLGLLSLPALWWLLRVMPPRPKRVEFPPTR
                     LLFDIAPREETPSRTPWWLTALRLAAAALVILAAAGPIWNPQTGLAGSKAPLAILLDD
                     GWSAASSWDMRIKAADELIANAENDRRAVALVPLSEPARDITLMPAGTARVALRQLAP
                     KPYSIERVETLPAIERFLKTTGDCEIAWLSDGVDTGRGTEFLEGLSKTIGDRTLTVVE
                     GGAPPAQALAAAENAAAKMTVKVLRTDGGSAGGVVRAMDAKGAPIAEAHYNFGAQERE
                     TEAAFDLPVELRNDIARLEISGERSAGAVQLLDKRWRRRAIGVVSGSTSDTAQPLLAS
                     TFYLSRALSPFADVRLGDRGAPQQVIAQFLAQRLPMIVMADVGTLSPEIRERLNAWID
                     QGGVLVRFAGPRLAQADDDLVPVKLRKGGRTLGGSLTWEKPQHMASFAADGPFAGLVV
                     PKDITVSRQVLAEPDAVLSTKSWASLEDGTPLVTGEHRGKGVVSLFHVGADSRWSDLP
                     MSGTFVEMLRRLVDMSGYTSTPGAGVAGEPKAETVAPLRTLDGFGAFGPPPSTAKPMS
                     ADYRDRATIDHPPGFYGPAEGPIAVNTLAASDRIAPLNTSSLKARRASYTNAEPR"
     gene            complement(1861..2799)
                     /locus_tag="VE567_01550"
     CDS             complement(1861..2799)
                     /locus_tag="VE567_01550"
                     /inference="COORDINATES: protein motif:HMM:NF013998.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HYZ47558.1"
                     /translation="MAAEIKHLDKEILAVRRADGESRSLAASLPRLVLEARRIAANVI
                     HGLHGRRRAGAGESFWQYRRFVSGEPSQNVDWRRSARDDHLYVREQEWEAAHTIWIWP
                     DRSPSMAFASKQARDSKLERGLIVAFALAELLVSGGERVGVPGLMNPTSSSSVIDKMA
                     QAMLHDDATRASLPPSFVPSALAEIVVLSDFWSPMPEIRTMLAGLSASGAHGTLVQIV
                     DPAEETFPYSGRVEFVEPEIGSAITAGRAERWADDYVARVAVHRDEIRAETNRLDWLF
                     STHTTGRSAAELLLFLHSGMMVSKGGRPTVKAGRSA"
     gene            complement(2799..>3447)
                     /locus_tag="VE567_01555"
     CDS             complement(2799..>3447)
                     /locus_tag="VE567_01555"
                     /inference="COORDINATES: protein motif:HMM:NF019346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HYZ47559.1"
                     /translation="PVFAQLLMADEINRASPRTQSALLQAMQEQHITVAGARHDLPKP
                     FHVLATQNPLEQEGTYPLPEAQLDRFLMEIDVDYPDRDAERRILFETTGADETLAKAA
                     MSAELLLSAQRLVRRLPVGDSVVEAILSLVRAARPSLEGEKLIAWGPGPRASQSLMLA
                     VRARALLDGRLAPSIDDVLDLAEPVLKHRMALTFSARAEGRTIPDVIKQLKTRIG"
BASE COUNT          552 a         1177 c         1176 g          542 t
ORIGIN      
        1 cgcgcggttc ggcattggtg tagctcgccc gccgcgcctt cagcgacgag gtattaagcg
       61 gggcgatgcg gtcggaggcc gccagtgtgt tgacggcgat cgggccttcg gccggaccgt
      121 agaagccggg cggatggtct atcgtggcgc gatcgcgata atcagccgac atcggtttgg
      181 cggtcgaggg cggcggaccg aaggcgccaa agccgtcgag cgtgcgcaac ggcgccacgg
      241 tttcggcctt cggctcgccg gcgacgccgg cgccgggcgt ggaggtgtag ccggacatgt
      301 cgaccaggcg ccgcagcatc tcgacgaagg tgccggacat cggcagatcc gaccagcgcg
      361 aatccgcgcc gacatggaac aggctgacca cgcccttgcc gcggtgctcc ccggtaacga
      421 gcggcgtgcc atcctccagc gacgcccagc tcttggtcga gagcacggcg tccggttcgg
      481 cgagcacctg ccggctcacg gtgatgtcct tgggtacgac gaggccggca aacggtccgt
      541 cggctgcaaa tgacgccatg tgctgcggtt tctcccaggt gaggctgccg ccgagcgtgc
      601 ggccgccctt gcgcagtttg accggcacga gatcgtcgtc agcttgcgcg agccgggggc
      661 ctgcgaagcg cacgagcacg ccgccctgat cgatccaggc gttgagccgt tcgcggattt
      721 ccggcgacag cgtcccgaca tcggccatca cgatcatcgg cagccgctgg gcgaggaact
      781 gcgcgatcac ctgctgcggc gcgccgcggt cgccaagccg cacgtcggca aacggcgaca
      841 gcgcgcggct gagatagaag gtggatgcca gcagcggctg cgcggtgtcg ctggtcgagc
      901 cggagaccac gccgatcgcg cgccgccgcc atcgcttgtc gagcagttgc acggcgccgg
      961 cggagcgctc gccggagatc tcgaggcggg cgatatcgtt gcgcaattcg accggaagat
     1021 cgaacgcggc ctcggtctcg cgctcctgcg cgccgaaatt gtagtgcgct tccgcgatcg
     1081 gcgcgccctt ggcgtccatc gcgcgcacca cgccgccggc actgccgccg tcggtgcgca
     1141 gcacctttac cgtcatcttc gccgcggcat tttcggcagc ggccaacgcc tgcgccggcg
     1201 gtgcgccgcc ttcgaccacg gtcaaggtgc gatcgccgat cgttttggaa agtccctcca
     1261 gaaactccgt accgcgtccg gtatcgacgc cgtcggacag ccaggcgatc tcgcaatcgc
     1321 ccgtggtttt caggaaacgt tcgatcgcgg gcagggtctc aacccgctcg atcgagtagg
     1381 gtttcggcgc caactggcgc agcgccacgc gcgcggtacc cgccggcatc agcgtgatat
     1441 cccgtgcagg ctcggacagc ggcaccagcg ccacggcgcg gcggtcattc tcggcgttgg
     1501 cgatcagctc gtcggcagcc ttgatccgca tgtcccagct cgacgccgcg ctccagccat
     1561 cgtcgagcag gattgcaagc ggcgccttgc tgccggcgag cccggtctgc ggattccaga
     1621 tcgggccggc ggcggcgaga atgaccaggg cggccgcggc gagccgcagc gcagtcagcc
     1681 accacggcgt gcgcgacggg gtctcttccc tgggcgcgat atcaaacagc agccgcgtcg
     1741 gcggaaactc gacccgtttg gggcgcggcg gcatcacccg cagcagccac catagcgccg
     1801 gcaggctcaa cagcccgagc agcagcatcg gttcggcaaa ggaaagcggc aggcctgcta
     1861 tcatgcgctt cgccccgctt tcaccgtcgg ccgaccgcct ttgctcacca tcatgcccga
     1921 gtgcaggaac agcaatagtt ccgccgccga gcggcctgtg gtgtgggtcg agaacagcca
     1981 gtcgagcctg ttggtctccg cgcggatctc gtcgcgatgc actgccacgc gggcaacata
     2041 atcatccgcc caccgctcgg cccggccggc ggtgatggcg ctgccgatct ccggctcgac
     2101 gaactcgacg cggccggaat agggaaacgt ctcttcggcg ggatcgacga tctgcaccag
     2161 cgtgccgtgg gcaccggaag ccgacagccc ggcgagcatc gtcctgatct cgggcatcgg
     2221 cgaccagaaa tccgacagca ccacgatctc ggccagcgcc gacgggacga atgacggcgg
     2281 caggctggcg cgcgttgcgt cgtcatgcag catcgcctgc gccatcttgt cgatcacact
     2341 gctgctcgag gtcggattca tcaggcccgg cacgccgacg cgttcgccgc ccgagaccag
     2401 aagctcggcg agcgcgaacg ccacgatcag tccgcgctcg agttttgaat cgcgcgcctg
     2461 tttcgaggcg aacgccatcg acggcgaacg gtccggccag atccagatgg tgtgcgcggc
     2521 ttcccattcc tgctcgcgga cataaagatg gtcgtcgcgc gccgagcgtc gccagtcgac
     2581 attctgcgac ggctcgccgg agacgaagcg gcggtactgc caaaagctct cgccggcgcc
     2641 ggcgcggcgg cggccatgca ggccatgaat gacgttggcg gcgatgcggc gggcctcgag
     2701 caccaggcgc ggcagcgatg cggcgagcga ccggctttcg ccatcggcac gtcggaccgc
     2761 cagaatctcc ttgtccaggt gcttgatctc ggctgccatc aaccgatccg ggtcttcaat
     2821 tgcttgatca cgtcaggaat cgtgcgtcct tcggcacggg cggagaaggt cagcgccatg
     2881 cggtgcttga gcacgggttc ggcgagatcg agcacgtcgt cgatcgacgg cgcaaggcgc
     2941 ccgtcgagca gcgcgcgggc gcggaccgcc agcatcagcg actggctggc gcgcgggccc
     3001 ggtccccagg cgatcagctt ctcgccttcc agacttggac gtgctgcgcg caccaaagac
     3061 aggatcgcct cgactacgga atcaccgacc ggcagccgcc gcaccagccg ctgcgcgctg
     3121 agcaaaagct ctgcgctcat cgcggctttc gccagcgtct cgtcggcgcc ggtggtctca
     3181 aacaggatgc gccgctcggc atcgcgatcg gggtaatcga cgtcgatctc catcaggaag
     3241 cggtcgagct gcgcctccgg cagcggatag gtgccttcct gttccagcgg gttctgcgtc
     3301 gccagcacgt ggaacggttt tggcaaatcg tgccgcgcgc ccgcaaccgt gatgtgctgc
     3361 tcctgcatgg cttgcagcag cgccgattgg gtgcgcgggc tggcgcggtt gatctcgtcc
     3421 gccatcagga gctgggcgaa caccggc
//
LOCUS       DASQVK010000074         6698 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_67754, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000074 DASQVK010000000
VERSION     DASQVK010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6698)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6698)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6698
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67754"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..421)
                     /locus_tag="VE567_01560"
     CDS             complement(<1..421)
                     /locus_tag="VE567_01560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47560.1"
                     /translation="MTGPDQGEVRNRILRTFSPADYDLLRPHLSLRETPKGARLIDPD
                     RPPPFGYFLESGLGSVIAELPSGQAVEIGLYGLDGFGGIPLILEAGHSPHRLEMQIGG
                     WAYVVPADVLASALQRSSTLRAVMLRYVQFFLLQAAQN"
     gene            complement(491..1495)
                     /gene="thiS"
                     /locus_tag="VE567_01565"
     CDS             complement(491..1495)
                     /gene="thiS"
                     /locus_tag="VE567_01565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010545981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HYZ47561.1"
                     /translation="MHTDGTITISVNGEHKRVLAGLTIAQLASELGLVPEKVAVERNL
                     EIVPRSTLGQVLVEDGDELEIVHFVGGGDHSARIDEDAWTVAGRSFRSRLIIGTGKYK
                     SFEENAAAAEASGAEIVTVAVRRVNIADPNQPMLTDFIDPKRFTYLPNTAGCFTAEDA
                     IRTLRLAREAGGWDLVKLEVLGEAKTLYPDMVETLRATEILAKEGFLPMVYCVDDPIA
                     AKRLEDAGAVAIMPLGAPIGSGLGIQNEVTIRLIVEGATVPVLVDAGVGTASDASRAM
                     ELGCDGVLMNTAIAEAKDAVMMARAMKLAVESGRLAYRAGRMGKRRYADPSSPLAGLI
                     "
     gene            1567..1998
                     /gene="aroQ"
                     /locus_tag="VE567_01570"
     CDS             1567..1998
                     /gene="aroQ"
                     /locus_tag="VE567_01570"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010187201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HYZ47562.1"
                     /translation="MPTIFVLNGPNLNLLGLREPEIYGSDTLDDIAGRCEDRARELGF
                     DIEFRQSNHEGHLIDWLHEANADGAKAVILNPGGYTHTSVALHDAVKAISVPVIEVHL
                     SNPHAREPFRHASYVGKAARGTIAGFGALGYLLALDAAAKL"
     gene            2186..2653
                     /gene="accB"
                     /locus_tag="VE567_01575"
     CDS             2186..2653
                     /gene="accB"
                     /locus_tag="VE567_01575"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HYZ47563.1"
                     /translation="MTDSNQGAMQVDTDLVRQLAELLDATQLTEIEVQDGDRRIKVAR
                     KVQAAAVAQVAPAPAAPAASAAATAAAAPAQPDQANAIRSPMVGTAYLSPEPTAPAFV
                     AVGDKVNAGDTLLIVEAMKVMNPIVAPHPGTVRAILIANGSPVEFDQPLVVVE"
     gene            2660..4009
                     /gene="accC"
                     /locus_tag="VE567_01580"
     CDS             2660..4009
                     /gene="accC"
                     /locus_tag="VE567_01580"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0004075 - biotin carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HYZ47564.1"
                     /translation="MTISKILIANRGEIALRIHRAAHEMGIKTVAVHSTADTDAMHVR
                     LADEAVCIGPPPATESYLNIPNIISAAEISGADAIHPGYGFLSENARFAEIVESHNLI
                     WIGPKPEHIRTMGDKVEAKRTAGALGLPLVPGSPGGVGSFAEARAIAAEIGYPVIVKA
                     ASGGGGRGMKVVDSEDRLESLMGQARSEAKAAFGDDTVYIEKYLGNPRHIEFQIFGDG
                     RGNAIHLGERDCSLQRRHQKVVEEAPSPVITPEERARMGGIVAKAMSDMGYRGAGTIE
                     FLWEAGEFYFIEMNTRLQVEHPVTEAITGLDLVREQIRIADGHALTLRQEDVEFRGHA
                     IECRINAEDPRTFAPSPGVVGQFHAPGGMHVRVDSGLYSGYRIPPYYDSMIAKLIVWG
                     HSREGALRRLRRALEEFVIEGVKTTIPLHQALLDDPDFQKGNYSIKWLEEWLAKEQA"
     gene            4099..5085
                     /locus_tag="VE567_01585"
     CDS             4099..5085
                     /locus_tag="VE567_01585"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HYZ47565.1"
                     /translation="MKRFAFAAAGALALAAAAPASAAAFTKFVVFGDSFLDAGNVQAA
                     VGPIFTDPQLGYWQGRFSNGPNWIDYLSYASYGMPTTASLLGGTNFAVGGARASGDDV
                     QALGTIPGLPSQLDLYTQYLMLTGQAFDPDALYVINFGNNDVNYIQALLGAGNPLAAA
                     GVAAAYVFNMTHAVLRLRDLGARTVLLAGVPNPTEVEGQALQAALDASLDAITPALGS
                     TKLVRFDYFNYYETLLADPTAVGLPATLNLTVPCLAAEPPSPSIDCHNYLSFDGTHVT
                     KGVQASISFQIAHQLGIAAIPEPASWAMMVAGFAAAGAAFRRGRRRTALVQA"
     gene            5126..5647
                     /locus_tag="VE567_01590"
     CDS             5126..5647
                     /locus_tag="VE567_01590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47566.1"
                     /translation="MNRVDRKAGAIGMALLLTLGGAAAGAAWSQFTTDALVWRPVPSQ
                     VPMTDAPVAAPVDQVQAGQSWARSAFDGGLRKCPAVNAEFLAACESEMKALAARPALP
                     LGSYGGPLLVTKVEPVARDPEIASYRPEQPAFDNVRDEPDTPGYEDEEDGPVSGTPLE
                     ATPDDYPAAPRGE"
     gene            complement(5656..6270)
                     /locus_tag="VE567_01595"
     CDS             complement(5656..6270)
                     /locus_tag="VE567_01595"
                     /inference="COORDINATES: protein motif:HMM:NF024627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HYZ47567.1"
                     /translation="MAGYIGYFRIDGARFSDNDMRVIREGINVVGGRNITLERNRFED
                     FQPFTGDHSDAMQFFTTGLTRPEDMAARDIVIRNNLCLANGKAQCLFVTDQIGMAKQG
                     RGYAGFTIEDNVVVGAAWHGITVHDAENIAIRNNRLLRVSGVDSMDSRIDLEGSTGTL
                     SDNQANAFIRLDKVKQSRNRRDGPTDAPKVKSVIGDWIARYRKS"
     gene            complement(6210..>6698)
                     /locus_tag="VE567_01600"
     CDS             complement(6210..>6698)
                     /locus_tag="VE567_01600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47568.1"
                     /translation="FVWSVLLASPMPPQDPSAPISQSEWKAMLARAQNGGVIDLGKRR
                     VDFARIVFQPAARVTIKGGVFGPVTLDKWRNVTFDGATFEGPPGTPEVQSLMLAYEPQ
                     HLTVRNCRFSGYRRRPASFGSSAPRSAAERMSRSSTATSKTWRAISAIFGLTEPGLAT
                     TT"
BASE COUNT         1181 a         2253 c         2116 g         1148 t
ORIGIN      
        1 agttttgagc ggcttgcagc agaaaaaact ggacatagcg caacatcacg gcccgcaacg
       61 tggagctgcg ctgcagcgcg ctcgccagca catcggccgg aacgacatag gcccagccgc
      121 cgatctgcat ttcgagtcgg tggggcgaat gtcctgcttc cagaatgagc ggaatgccgc
      181 caaatccgtc caacccatag agcccgatct ccactgcctg cccgctcggc aattcggcga
      241 tgaccgagcc caacccgctt tcgaggaaat agccgaaggg cggtggccga tcggggtcga
      301 tgaggcgcgc gccttttggc gtctcgcgaa gtgaaagatg gggccgcagc agatcatagt
      361 ccgccggcga gaacgtccgt aggatccgat ttctgacctc gccttggtcc gggcctgtca
      421 tcgaaagatg aacaaacgag acctttgttg gtgccctggg ctcggcggtg cccccttcta
      481 cggaccgacg tcagatcaag ccggccagcg ggctcgacgg gtccgcgtag cgccgcttgc
      541 ccatccgccc ggcgcgatag gccaggcgcc cgctttcgac cgccagcttc atcgcgcggg
      601 ccatcatcac cgcgtccttg gcttccgcga tggccgtgtt catcagcacg ccgtcgcagc
      661 cgagctccat cgcgcggctc gcatcggaag ccgtgccgac gccggcatcg accagcactg
      721 gcaccgtcgc gccttcgacg atcagccgga tcgtcacttc attctggatg ccgagccccg
      781 agccgatcgg cgcgcccaga ggcatgatcg ccaccgcgcc cgcatcctcc agccgcttcg
      841 ccgctatcgg atcgtcgacg caatagacca tcggcagaaa gccttccttc gccaggatct
      901 cggtcgcgcg cagcgtctcg accatgtccg gatagagcgt cttcgcttcg cccagcactt
      961 cgagcttcac caggtcccag ccgccagcct cgcgcgccag ccggagcgtg cggatcgcat
     1021 cctcggcggt aaagcagccg gcggtgttcg gcagataggt gaagcgcttg gggtcgatga
     1081 agtcggtcag catcggctgg ttggggtcgg cgatgttgac gcgccgaacg gctaccgtca
     1141 cgatctctgc ccccgatgcc tcggccgcgg cggcattctc ctcaaagctc ttgtacttgc
     1201 ccgtgccgat gatcagccgc gagcggaagc tgcggcccgc gaccgtccac gcatcctcgt
     1261 cgattcgcgc cgagtgatcg ccgccgccga cgaaatgcac gatctcaagc tcatcgccat
     1321 cctcgaccag cacctggccg agcgtggagc gcggcacgat ttcgagattg cgctctaccg
     1381 ccactttctc cggcaccagt cccagctcgc tcgccagctg cgcaatagtc agcccggcca
     1441 acacgcgctt atgctcgcca ttgacgctga tcgtgatggt gccgtcggtg tgcattggga
     1501 aatccattcg tgtaagggcc ctgcagatat ggaataggcc gcagggtcgc aactcaaagg
     1561 ggatcaatgc ccaccatctt cgtcctcaac ggccctaacc tcaacctgct cgggctgcgc
     1621 gagcccgaaa tctatggctc cgacacgctc gacgatatcg ccggccggtg cgaggaccgg
     1681 gcgcgagaac tgggattcga catcgagttc cgccagtcga accatgaagg ccatttgatc
     1741 gactggctgc acgaggcaaa cgccgatggc gcgaaggccg taatcctgaa cccgggcggc
     1801 tacacccaca cctccgtcgc gctgcacgat gccgtgaagg cgatttcggt gccggtgatc
     1861 gaggtgcact tgtcgaatcc ccatgcgcgc gagccgttcc ggcatgcaag ctatgtcggc
     1921 aaagctgcgc gggggaccat cgccgggttc ggcgcgctcg gatatctact ggcgctggac
     1981 gcggcggcga aactctgagg aggtctttgt tcgcgccgag caatggtggg gacgaggtga
     2041 gttttggctt gcggccggga gtgagaaggt cgcgatgcgg aacgtcgcgc ccgacgagca
     2101 acgccgccac gctcctgccc agcgcgcctc tccaggcgat cacgaccgtt gctaggcgcg
     2161 aacatagacc ctaagggcca gccccatgac tgacagcaat cagggggcga tgcaggtcga
     2221 taccgatctg gtccgccaac tcgccgagct gctcgacgca acccagctca ccgaaatcga
     2281 agtccaggac ggcgatcgcc gcatcaaggt cgcgcgcaag gttcaggccg cggcagtggc
     2341 gcaggtcgcg cccgcgcctg ctgctccggc cgcgtccgcc gctgctacag cggccgcggc
     2401 accggcgcag cccgatcaag cgaacgcgat ccgttcgccg atggtcggca ccgcctatct
     2461 gtcgccggag ccgaccgcgc ccgcgttcgt tgccgttgga gacaaggtga atgccggcga
     2521 cacgctgctg atcgtcgaag cgatgaaggt tatgaacccg atcgtcgccc cgcaccccgg
     2581 gacggtgcgc gcgattctga tcgccaacgg cagcccggtc gagttcgacc agccgctcgt
     2641 cgtcgtcgag taaccaacgg tgacgatcag caagatcctg atcgccaatc gcggcgagat
     2701 cgcgctgcgc atccaccgcg cggcgcatga aatggggatc aagaccgtcg cggtgcactc
     2761 gacggccgat acggacgcga tgcatgtccg ccttgccgac gaagcggtgt gcatcgggcc
     2821 gccgccggcg accgaatcct atctgaacat ccccaacatc atctccgcgg cggagatcag
     2881 tggcgccgac gccatccacc cgggctatgg ctttctttcg gaaaacgccc gcttcgccga
     2941 gatcgtcgag agccacaacc ttatctggat cggccccaag cccgagcata tccggacgat
     3001 gggcgacaag gtcgaggcga agcgcacggc cggcgcgctc ggactgccgt tggtgccggg
     3061 ctctcccggc ggcgtcggca gcttcgccga ggcacgcgcg atcgccgccg agatcggcta
     3121 tcccgtcatt gtgaaggcgg cgtccggcgg cggcgggcgc ggcatgaaag tcgtggatag
     3181 cgaggaccgg ctggaaagct tgatgggcca ggcccggtcc gaggccaagg cggcgttcgg
     3241 cgacgacacg gtctatatcg agaaatatct cggcaatccg cgccacatcg aattccagat
     3301 cttcggcgat ggacgcggca acgcgattca cctcggcgag cgcgactgct cgctgcagcg
     3361 ccggcatcag aaagtcgtcg aggaagctcc ctcccccgtc atcacgccgg aggagcgcgc
     3421 gcggatgggc gggatcgtcg cgaaggcgat gtccgacatg ggctatcgcg gtgccggcac
     3481 gatcgagttc ctgtgggaag cgggcgagtt ctacttcatc gagatgaaca cccgcctgca
     3541 ggtcgagcat ccggtcaccg aggcgatcac cgggctcgat ctggtccgcg agcagatccg
     3601 catcgccgac ggccatgcgt tgacgctgcg ccaggaggat gtcgagtttc gcggccacgc
     3661 gatcgaatgc cggatcaacg ccgaggaccc gcgcaccttc gcgccctcgc ctggggtggt
     3721 cggccagttt catgcgccgg gcggcatgca tgtccgcgtc gatagcggcc tttattccgg
     3781 ttaccgcatc ccgccttact acgactcgat gatcgccaag ctcatcgtct ggggccacag
     3841 ccgcgagggc gcgctccgcc gcctccgccg cgcgctcgag gagtttgtga tcgagggcgt
     3901 gaagaccacc atcccgctcc accaggcgct gctggacgac cccgacttcc agaagggcaa
     3961 ctacagcatc aaatggctgg aggaatggct ggcgaaagaa caggcctagc cgccagccga
     4021 atttggccgc ggcgattgta actttcgcag agatatgaga gccttgccta ccggttaacc
     4081 aaaatcgggg aggagaggat gaagcgattc gcgttcgccg cggccggcgc tcttgcgctc
     4141 gccgccgcag ctccggcatc cgccgcggcc ttcaccaaat tcgtcgtgtt cggcgacagc
     4201 ttcttggacg ctggcaacgt ccaggcggcc gtaggcccga tcttcaccga tccccagctc
     4261 ggctattggc agggtcgctt ttcgaacggc ccgaactgga tcgactatct gagctacgcc
     4321 tcgtacggca tgccgaccac ggcgtcgctg ctcggcggca ccaacttcgc ggtcggcggc
     4381 gcgcgcgcgt cgggagacga tgtgcaggcg ctgggcacga tccccggcct gccaagccag
     4441 ctcgacctct atacccaata tctcatgctg acggggcagg cgttcgatcc ggatgcgctc
     4501 tacgtcatca acttcggcaa taacgacgtg aactatatcc aggcgctgct gggcgcgggc
     4561 aatccgctcg cagccgccgg cgtcgccgcc gcttatgtgt tcaacatgac gcatgcggtc
     4621 ctgcggctgc gggatcttgg ggccaggacc gtgctgctgg cgggcgttcc gaaccccacc
     4681 gaagtcgagg gccaggcgct gcaggctgcg ctcgacgcca gccttgacgc gatcacgccg
     4741 gcgctcggca gcacgaagct cgtacgcttc gattatttca actattacga gacgctcctg
     4801 gccgatccaa ccgccgtcgg ccttcccgcg acccttaacc tgacggtccc ctgcctggcc
     4861 gccgagccgc ccagcccgtc gatcgactgc cacaattacc tgtcgttcga cggcacgcac
     4921 gtcaccaagg gcgtgcaggc ctcgatttcg ttccagatcg cgcaccagct cggcatcgct
     4981 gccatccccg agcccgcgag ctgggcgatg atggtcgccg gtttcgccgc agcaggtgcg
     5041 gcgttccggc gcggccgtcg gcgaacggcg ctggtgcaag cctagcgccc aggaaccggc
     5101 gcccgatcgc gacggttctt gcggcatgaa ccgggtggac cgaaaagcag gcgcgatcgg
     5161 gatggcattg ctgctgacgc tgggcggtgc tgcggccggc gcggcctgga gccagttcac
     5221 caccgatgcg ctggtctggc ggccggttcc gtcgcaggtg ccgatgacgg atgcgccggt
     5281 cgcggctccg gtcgaccagg tgcaggcggg ccaatcctgg gcgcgctccg ccttcgatgg
     5341 cggcctgcgc aaatgcccgg cggtcaatgc cgaattcctg gccgcatgcg aaagcgagat
     5401 gaaggcgctc gccgcgcgcc ccgcgctccc gctcggcagc tatggcggcc cgctgctggt
     5461 gacaaaggtc gagccggtcg cgcgcgatcc cgaaattgcg tcttatcgac cggaacagcc
     5521 cgccttcgac aatgtgcggg acgaaccaga cacgcccggt tatgaggacg aagaggacgg
     5581 ccccgtttcc ggcaccccct tggaggccac gcctgacgat taccccgccg ccccgcgcgg
     5641 cgagtaggtg cgggtctagc ttttgcggta gcgcgcgatc cagtccccga tcacgctctt
     5701 cactttaggc gcatcggtcg gcccatcgcg gcggttgcgc gattgcttca ccttgtcgag
     5761 ccgaatgaac gcgttcgcct ggttatccga caaggtgccg gtgcttccct ccaggtcgat
     5821 ccgactgtcc attgaatcca cgccgctgac gcgcaaaagt cgattgttcc ggattgcaat
     5881 gttttccgcg tcgtggacgg tgatgccgtg ccaggcagcg ccgacgacca cattatcctc
     5941 gatcgtgaat ccggcatagc cgcggccctg cttggccatg ccgatctggt cggtaacgaa
     6001 caagcattgc gccttgccat tcgccaggca gagattgttc cggatcacga tgtctcgggc
     6061 ggccatgtcc tcgggccggg tcagtccggt cgtaaagaat tgcatcgcat ccgaatgatc
     6121 gccggtaaac ggctggaaat cctcgaaacg attacgttca agcgtgatgt tgcggccacc
     6181 gacgacgttg atcccttcac ggatgaccct catgtcgttg tcgctaaacc gggctccgtc
     6241 aatccgaaaa tagccgatat agcccgccat gttttcgaag tggctgtgct cgatcgtgac
     6301 atccgttccg ccgcggatcg aggggccgaa gacccaaagc ttgccggtct ccgccgatag
     6361 cctgagaagc ggcaattgcg cacagtgagg tgctgcggct cgtacgcaag catcagcgac
     6421 tggacttcgg gcgtgcccgg cggcccttcg aacgtggcgc cgtcgaacgt cacgttccgc
     6481 catttgtcga gcgtcaccgg accgaaaacg ccgcccttga tcgtcacccg cgcggccggc
     6541 tggaacacga ttcgcgcaaa gtccacacgg cgtttgccca gatcgatcac gccgccattc
     6601 tgggcgcgtg ccagcatcgc tttccactcc gattgcgaga tcggcgcgga cgggtcctga
     6661 ggcggcatgg gcgaggcgag caacacgctc cagacaaa
//
LOCUS       DASQVK010000075         4948 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_257743,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000075 DASQVK010000000
VERSION     DASQVK010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4948)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4948)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4948
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257743"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            56..964
                     /gene="rpoH"
                     /locus_tag="VE567_01605"
     CDS             56..964
                     /gene="rpoH"
                     /locus_tag="VE567_01605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HYZ47569.1"
                     /translation="MASGNNVPATIPALGGEAGLNRYLSEIRKFPMLEPNEEFMLAKR
                     YKEHGDPDAAQRLITSHLRLVAKIAMGYRGYGLPVSELISEGNIGLMQGVKKFEPDRG
                     FRLATYAMWWIRASIQEFILRSWSLVKMGTTAAQKKLFFNLRRMKNRIDAFEDGDLRP
                     EDVTKIATDLGVSEEDVVSMNRRMAMGGDTSLNVSMREDSESQWQDMLADTDPLQDER
                     IAESEEKQVRHELLLEAMHDLNDREKHILTERRLAEEPKTLEELSQVYGVSRERVRQI
                     EVRAFEKLQRAMMRLAGERRLLPAAA"
     gene            1016..1750
                     /gene="mtgA"
                     /locus_tag="VE567_01610"
     CDS             1016..1750
                     /gene="mtgA"
                     /locus_tag="VE567_01610"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007404218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009274 - peptidoglycan-based cell wall
                     [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HYZ47570.1"
                     /translation="MATAARPRPKSRRAKQRASFRPIRFFVRLVVGLFLVSVLWVLAY
                     RFVPPPFTFTMLGDVLAGRSVTKEWIPLSRIDPNMARAVIAAEDSRFCSHHGFDVDAI
                     AAAAIRNASGGKIVRGGSTISQQTAKNAFLWQGGGYFRKGLEAYFTVLVEAIWGKRRI
                     MEVYLNLAETGIGTYGVNAGAQRYFRHEAARLSPVEAARIAAVLPLPKKRAGAAPTGY
                     TRRYGNTILRRAAIVRRDALDACLRQ"
     gene            complement(1754..2029)
                     /locus_tag="VE567_01615"
     CDS             complement(1754..2029)
                     /locus_tag="VE567_01615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47571.1"
                     /translation="MVERRVVETSDGTTVERDGGTTIVERRGSGAGVLIGIVALIAVA
                     LLAWFLIAQNRNDTARTDAVTGAASSVAGSAQKAADKVGEAADQATK"
     gene            2230..2448
                     /locus_tag="VE567_01620"
     CDS             2230..2448
                     /locus_tag="VE567_01620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47572.1"
                     /translation="MAWYRLYHLGSDGQHIAPEDVEAFDDLSAVRKARTVPNGFGAEL
                     WHGRRKIADVPPTIIHRQIGRRVGLFGA"
     gene            2573..3247
                     /gene="lexA"
                     /locus_tag="VE567_01625"
     CDS             2573..3247
                     /gene="lexA"
                     /locus_tag="VE567_01625"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HYZ47573.1"
                     /translation="MLTRKQHELLCFIHDRLAESGVSPSFEEMKDALDLKSKSGVHRL
                     ISALEERQFIRRLPNRARALEVLRMPDAGGKSAAAAPAPAPSLAKVAVPIAANENILE
                     IPLHGRIAAGMPIEALEGQSSLSVPAALLGPGEHYALEVAGDSMVEAGILDGDYALIR
                     RADTARDGQIVVALVDDNEATLKYFRREGAMVRLDPANRAYDPQRYTPNRVRVQGCLA
                     GLLRRY"
     gene            complement(3891..4883)
                     /locus_tag="VE567_01630"
                     /pseudo
     CDS             complement(3891..4883)
                     /locus_tag="VE567_01630"
                     /inference="COORDINATES: protein motif:HMM:NF015714.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
BASE COUNT          877 a         1693 c         1624 g          754 t
ORIGIN      
        1 ttaaaaagtg cgggacgaaa atattcgccc gcgacatgaa gggagtttct cgatcatggc
       61 cagtggcaac aacgtcccgg cgacgatccc ggcgctcggg ggcgaggccg gcctcaaccg
      121 ctacctgtcg gaaatccgca agttcccgat gcttgagccg aacgaagagt tcatgcttgc
      181 caagcgctac aaggaacacg gagacccgga cgccgcacag cgcctgatca cgtcacacct
      241 gcgcctcgtc gccaagattg ccatgggcta tcgcggctac ggcctgccgg tctcggagct
      301 gatctccgag ggcaatatcg gcctgatgca gggcgtgaag aagttcgagc cggaccgcgg
      361 cttccgcctc gccacctatg cgatgtggtg gatccgcgcc tccatccagg aattcatcct
      421 gcgctcgtgg agcctcgtga agatgggcac cacggcggcg cagaagaagc ttttcttcaa
      481 tctccgccgg atgaagaacc ggatcgacgc gttcgaggac ggcgatctgc ggccggagga
      541 cgtgaccaag atcgcgaccg atctcggcgt gtccgaagaa gatgtggtca gcatgaaccg
      601 ccgcatggcg atgggcggcg acacctcgct caacgtctcg atgcgcgagg acagcgagag
      661 ccagtggcag gacatgctgg ccgacaccga cccgctgcag gacgagcgga tcgcggaatc
      721 cgaggaaaag caggtccgcc acgagctgct gctggaagcg atgcatgacc tcaacgaccg
      781 cgaaaagcat atcctgaccg agcggcggct cgccgaagag ccgaagacgc tcgaagaact
      841 gagccaggtt tatggcgtca gccgcgagcg cgtgcgccag atcgaagtgc gcgcgttcga
      901 aaagcttcag cgcgcgatga tgcgactggc cggcgaacgc cgcctgctgc cggcagccgc
      961 ctgagcagac cgttcctcct cttgcaggga gaggaagctg cgctaagcat cgtgcatggc
     1021 caccgccgcc cgtccgcgcc ccaagtcgcg ccgcgcaaag cagcgcgcga gctttcgccc
     1081 aatccgtttc ttcgtgcggc tggtggtcgg gctatttctg gtttcggttc tctgggtcct
     1141 cgcctaccgg ttcgtgcccc ctcctttcac cttcacgatg ctgggcgacg tgctcgccgg
     1201 ccgcagcgtc acaaaagagt ggataccgct ttcgcgcatc gatccaaaca tggcgcgggc
     1261 agtgattgcg gccgaagaca gccgcttctg ctcccatcac ggctttgatg tggatgcaat
     1321 cgcggcggct gcaatccgca acgccagcgg cggcaagatc gtccgcgggg gctcgacgat
     1381 cagccagcag accgcaaaga acgcctttct gtggcagggc ggcggctatt tccgcaaagg
     1441 gctggaagcc tatttcactg tcctggtcga ggcgatctgg ggcaagcgcc ggatcatgga
     1501 agtctatctg aacctcgccg agaccgggat cggcacctat ggcgtgaatg ccggcgccca
     1561 gcgctatttc aggcacgagg ccgcacggct ctctcccgtg gaggccgcgc ggatcgcggc
     1621 ggtgctgccg ctgccgaaaa agcgcgccgg tgccgcaccg accggctata cgcgccgcta
     1681 cggcaacacc atattgcgcc gcgccgcgat cgtgcgacgc gacgccctcg acgcctgcct
     1741 gcggcaataa gcgttacttg gttgcctgat ccgcggcttc gccgaccttg tcggcagcct
     1801 tttgggccga gcccgcgacg ctggaggccg cgccggtcac cgcatcggtc ctggccgtat
     1861 cattgcggtt ctgcgcgatc aggaaccagg cgagtaacgc caccgcgatc aacgcaacga
     1921 tcccgatcag cactccggcg ccgctgccgc gccgctccac gatggtcgtg ccgccatcgc
     1981 gctcgacagt cgtcccatcg cttgtctcta cgacccgtcg ttcaaccatt ttcttcgctc
     2041 ccaaccgaaa aacgggaaag aaacgaaggc gccggtcggc cggttccggc agcctgaagg
     2101 cgacgttcga ccgctccttc ctcaccgcgc agctggcacg ggcgctcgcc aaagccaggc
     2161 gccgcctttc gggaactccg cccggctccc cggcgttttg ccacctcgga ctggattcat
     2221 gggggagcca tggcttggta tcggctatat catctcggct ctgacgggca gcatatcgcg
     2281 cccgaggatg tcgaagcctt cgatgacctg agcgccgtgc ggaaggcgcg gaccgtgccc
     2341 aacggcttcg gtgccgaatt atggcacggg cgacgcaaga tcgccgacgt gccgcccacc
     2401 atcatccatc gccagatcgg gcgccgcgtc ggcctgttcg gcgcctgaac gctttctttc
     2461 tgtggtttga gctgcccgtc cgcgccgcgc gttcgcggat gttccgattt cgcgcttgac
     2521 cgttacggcg ccgcgccata agtgttcctt gttcgttctg cggagggacg cgatgctgac
     2581 gcgcaagcaa catgaactgc tttgcttcat tcacgaccgg ctggcggaaa gcggcgtttc
     2641 gccttcgttc gaagagatga aggacgcgct ggacctgaag tccaaatcgg gcgtgcaccg
     2701 gctgatctca gccttggaag agcggcagtt catccggcgc ctgccgaacc gtgcgcgcgc
     2761 gctcgaagtg ctgcgtatgc ccgatgccgg cgggaaatcg gccgcggctg cgccggctcc
     2821 cgcgccctcg ctggcgaaag tcgcggtgcc catcgccgca aacgagaaca tactcgaaat
     2881 cccgctccac ggccgtatcg cggccggcat gcccatcgag gcgctggagg gacagagcag
     2941 cctgtccgtc cccgccgccc tgctgggccc cggcgaacat tatgcgctgg aagtggcggg
     3001 cgattccatg gtcgaggccg gcatcctcga cggcgactat gcgctgatcc gccgcgccga
     3061 cacggcgcgc gacggccaga tcgtcgtcgc gctggtcgac gacaatgaag cgacactcaa
     3121 atattttcgc cgcgaaggcg cgatggtccg cctcgacccg gccaaccggg cttatgaccc
     3181 ccaacgctac actccgaacc gggtgcgcgt gcaggggtgt ttggcagggc tgttgcggcg
     3241 ctactaaggc gagggccgat ctcctgttcc tgacccgttc gtttcgaacg gaaatcggaa
     3301 tatgttgggt tagcactgcg ccacggatgt tggtcgcccg ggccagcagc ggtttccacc
     3361 cgcggcgatg gaccgaacac gatcgccaca ccgcccgtcc gcgccagcat gggcttgtcg
     3421 aacttcagcc atttcgggcg gcaggtgcgc gggaggcggc ggtcgctgac gacgatgtcc
     3481 gcttcggcgc aggcgcggtt catggcgtcg atgggagtga gataggcgct gcgggtggcg
     3541 agcacgcgcc aggtgcggcc gttgcgcgcg atggtggccg aacaggcatc ggccgtgcag
     3601 gcggcgccgg gcagcgcgtc gaaatcggca agctccgcgt cgatgccggc cgcttcggcg
     3661 agcatgtcgc gcacgaaatc cttcgccttg ggccggagca acgcgtagcc gccatcaggg
     3721 ccgcgcagtg ccagatgacg gccgtcaccc gtgacgagca ggtccggcgc gggggtgccg
     3781 agcgcccaga gcgcgcccgc tgcaaagggc agcacgcccg cccagcgcag ccgcgtccgc
     3841 cacaggcaga tccacagccc gccggccagg agcaaggcga aggcaccccg cggcaccccc
     3901 ggcagcagcg cgacggcgcc gggcgcgtgc cccgccagat gcgcgatcca gagcaggaag
     3961 ccgatcgcct tccccgtcgc ccaccagaaa ggcgcgccga ggccgaccaa gtcgaacagc
     4021 agcgccatca cttcgagcgg catcaccgcg aatgtcgtca gcgggattgc gacaatgttg
     4081 gcgagcgcgc cgtaaagccc ctcgcgatgg aaatggaaca gcgcgatcgg ggcaagcgcc
     4141 agctcgaccg cgatgccgct cagcagcagg gccgccgtgt tccgtccgag ccggaacagc
     4201 gccccttcct cccgcgccgc catgaacgcg cgcatccgcg gatgctcgtg cagcgcgacg
     4261 attgccacca ccgcggcgaa gctcagttga aagctgggac cgatcagcgc ttcgggccag
     4321 accagcagca cgattacggc gcccgccgcg accagccgca gcgtcaacgc ctctcgccca
     4381 atggccatgc cgccgagcac gagcaaggca gccacgcagg accggaccgt cggcacttcc
     4441 gcgccgctga gcagagtata agccatcccg gtcacggcgc ccgcgcccgc ggcgaccagc
     4501 accagcggcc agcgcagcgc gagcgtagta ctcagcgcca ggaggcgcag ggtcagcagc
     4561 atcgcggcgc ccacggctgc cgtgatgtga agcccgctga cggacagcag atgcgcgagg
     4621 ccggcgcggc gcatcgcatc ggcatcgtct gcgcctacgc tcccttggtc gccggtgacg
     4681 agcgcaaccg caatcccggc aggccccgcc ggcaaggaag cacggatatg cgccccgatg
     4741 cgctcgcgca cggagccgcc gtcgggcgca acagcgagcc gctcgaccgg cgcgaaggct
     4801 ttgccggtcg cgcccaattg ctgaaaccag gcggtaagtg cgaagtcata gccgcccggc
     4861 agcgaggcgg taggcggcgg catcagtcgc gcccgcagcc gcagccggtc gccgcgcgca
     4921 aggcccggcg gcgcatcggc cttggcaa
//
LOCUS       DASQVK010000076         3317 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_162697,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000076 DASQVK010000000
VERSION     DASQVK010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3317
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162697"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1307)
                     /locus_tag="VE567_01635"
     CDS             complement(<1..1307)
                     /locus_tag="VE567_01635"
                     /inference="COORDINATES: protein motif:HMM:NF024257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HYZ47574.1"
                     /translation="MLTLKQQLLAATIIAGVAAPAQAQFSFPSAELRGVGASTPADIN
                     VKVNNCIGVNQQLGSNNGSLSSVTLTDFVPTTPSTSNPDLFCSTGDGLENNIYNGSTT
                     FTGKYVSTGSGFGRQQWRLFTNQFTGSSSSTNPFGTWANVQYALSESPTTFSEYNTDY
                     ANNAATVAGAGIQLPLYVVPIAFAYNPQYGSNNGTPLNFRVKSPQSINGAVAGGLKLS
                     KDVYCRIWNGQITNWNHPDLTALNGGQSLRDLNDPQARWDSEGVPIRLVGRADKSGGT
                     DVFSHAMSAQCGTTVANGGTNKFEKAQESLPYDNTSAIDIRPLRSDSNYFPGSAAKNF
                     AGTTQTLSGYVYDRNTEKLCFWNEVSGGACPATPAAINNALLVGKFIVADTSAGIEKA
                     LRLNNNNLAIASSVTPGLTLNGKLGYLGADFIVPSAGRTLHGAA"
     gene            1716..>3317
                     /locus_tag="VE567_01640"
     CDS             1716..>3317
                     /locus_tag="VE567_01640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004211590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase, T2SS/T4P/T4SS family"
                     /protein_id="HYZ47575.1"
                     /translation="MNIQARISGEAAPDAAALPGDGLEALLVQGLVGPEALERARLVQ
                     RETGERFDSVLTRLGLVTEQALAEALAGATGCDLIAADSYPAQPVEGPELSLAFLQDN
                     RCVPVESLADRVRVAVANPFEPFAASALGFMFGKQVELGIGRASDIDQAIERLYRSGA
                     AEQEGDAEAEVGGEDLERLKDLVSDAPVIRAVNRLIAQAVDGRASDIHIEPADDSLRV
                     RFRIDGVLQDRPALPAVMRASLVSRIKIMAGLDIAEKRLPQDGRIRIAVRGHEVDLRV
                     ATAPSIHGESVVMRILDKSKLALDLGAIGLDAELTGSFRRAISAPHGIVLVTGPTGSG
                     KTTTLYAALAELNQRERKLLTVEDPIEYRLPGVVQAQVNPAIGFTFGAALRSFLRQDP
                     DVIMVGEIRDGETAEIAVQAALTGHMILSTLHTNTAAGAVTRLLDMGMEPFLLSSVLT
                     GVVAQRLVRRLCEQCREPRPPQPEIAPLFEANGVPAPPVLYTAQGCRRCNGAGYMGRV
                     AVFELLTVDDSVARLILGRADTRTIN"
BASE COUNT          555 a         1033 c         1118 g          611 t
ORIGIN      
        1 gctgcgccat gcagcgtgcg accggcgctg gggacgatga agtcggcgcc gagatagccg
       61 agcttgccgt tcagcgtcag gcccggcgtc accgaggagg cgatcgccag gttgttgttg
      121 ttcaggcgga gggccttctc gatgccggcc gacgtgtcgg cgacaatgaa cttgccgacg
      181 aggagagcgt tgttgatggc cgccggggtg gccgggcagg cgccgccgct cacttcgttc
      241 cagaagcaga gcttctcggt gttgcggtca tagacatagc cgctgagcgt ctgggtcgtg
      301 cccgcgaagt tcttcgccgc cgaacccggg aagtagttgc tgtcgctgcg cagcggacgg
      361 atgtcgatcg cgctggtgtt gtcgtacggc agcgattcct gggccttttc gaacttgttc
      421 gtgccgccgt tcgcgaccgt cgtgccgcac tgagccgaca tggcatgcga gaacacgtcg
      481 gtgccgccgg acttgtcggc gcggccgacc agacgaatcg gaacgccctc gctgtcccaa
      541 cgcgcctgcg gatcgttgag gtcgcgcagc gactgaccgc cgttgagcgc cgtgaggtcc
      601 ggatgattcc agttggtgat ctggccgttc cagatccggc aatagacgtc cttggacagc
      661 ttcagaccgc cggcgaccgc gccgttgatc gactgcggcg acttcacgcg gaagttgagc
      721 ggcgtgccgt tgttgctgcc atattgcgga ttgtaggcga acgcgatcgg cacaacgtac
      781 agcggaagct ggatgcccgc gcccgcgacc gtagcggcgt tgttcgcata atccgtgttg
      841 tattcgctaa aggtggtcgg cgattccgac agggcatact gaacgttcgc ccaggtgccg
      901 aacgggttgg tgctggagct gctgccggtg aactggttgg tgaacaggcg ccactgctga
      961 cggccgaaac ccgaaccggt cgagacatat ttgccggtga aggtcgtgga gccgttgtag
     1021 atgttgttct caagcccgtc gccggtcgag cagaacaggt ccgggttgga ggtcgacggg
     1081 gtcgtcggga cgaagtcggt cagcgtgacc gagctcagcg agccgttgtt cgaaccgagc
     1141 tgctggttca cgccgatgca gttgttcacc ttgacgttga tgtcggccgg tgtcgaagcg
     1201 ccgacgccgc ggagttccgc gctcgggaac gagaattgcg cctgggcagg cgccgccacg
     1261 cccgcgatga tcgtcgcggc cagcagctgc tgtttcagag tcaacatttt tcattctccc
     1321 ttaggacgaa agtgatcgag cagcggtcct tggctgcgaa agtcgatcgt tgccggccgg
     1381 ctccccctgc tcctgctcca cgcacctcct caacagacaa caaaatacca gcgctgcgcc
     1441 aacctgttcg ttgacgcatc ggctaattcc ttgaagtctt tgagaacacg ctacggaaca
     1501 ggcgactcga tattctgtcg cgagatgtct gataggcagg cgaggtgaca gaattattat
     1561 ttctgaaaat tgttaacgcc aaatccacta tcatattctt gcaaggtatt tgaaatctgt
     1621 gatgctcatt tttgtcactc aggtgtaagg acacggtaac agaaaggctg gactgatcgg
     1681 ctagggtctc gcttcgagac cgggggaaca ggcgggtgaa catccaggcg cgcatttctg
     1741 gcgaagctgc accagacgca gcggcgctgc ccggcgacgg gttggaggcg ctgcttgttc
     1801 aaggcctggt cgggccggaa gcgctcgaac gcgcgcgcct ggtgcagcgc gagacgggcg
     1861 agcggttcga ttcggtgctc acgcggctgg gactggttac cgaacaggcg ctggcggaag
     1921 cgctggccgg cgcgaccggc tgcgatctga tcgccgccga ttcctacccc gcgcagcccg
     1981 tcgaagggcc cgaactctcg ctcgccttcc tgcaggacaa tcgttgcgtt ccggtcgagt
     2041 cgctcgctga ccgggtgcgg gttgccgtcg ccaacccgtt cgaacctttc gccgcatcgg
     2101 ccctcggctt catgttcggc aagcaggtcg agctgggcat cggccgggcg agcgacatcg
     2161 accaggccat cgagcgtctc taccggagcg gggccgcaga acaggagggc gacgcggaag
     2221 ccgaggtcgg cggcgaggat ctcgaacgcc tgaaggacct cgtcagcgac gcgccggtga
     2281 tccgcgcggt caaccggctg atcgcgcagg cggtggatgg ccgcgcttcc gacattcata
     2341 tcgagccggc cgacgattcg ctgcgcgtcc gcttccgcat cgacggcgtg ctgcaggatc
     2401 ggcccgccct cccggccgtc atgcgcgcgt cgctcgtgtc ccgcatcaag atcatggccg
     2461 gactcgacat tgccgagaag agactgccgc aggacgggcg gatccggatc gccgtgcgcg
     2521 gccatgaagt ggatttgcgc gtggcgaccg cgccttcgat ccatggcgag agcgtcgtca
     2581 tgcggatcct cgacaaatcc aagctggcgc tggaccttgg cgcgatcggg ctggacgccg
     2641 agctgaccgg cagcttccgc cgcgccattt ccgctccgca cgggatcgtg ctcgtcaccg
     2701 ggccgaccgg cagcggcaag acgacgacgc tttacgccgc gcttgccgaa ctcaaccagc
     2761 gcgagcgcaa gctgctgacc gtcgaagatc cgatcgaata tcgcctgccc ggggtcgtgc
     2821 aggcgcaggt caacccggcg atcggcttca cgttcggcgc ggcgctccgc tcctttctgc
     2881 gacaggatcc ggacgtgatc atggtcggcg aaatccgcga cggcgagacg gccgagattg
     2941 ccgtgcaggc agcgctgacc gggcacatga tcctttccac gctgcacacc aacaccgcgg
     3001 ccggcgccgt gacccggctg ctcgacatgg gcatggagcc tttcctgctc agctcggtgc
     3061 tcaccggagt cgtggcgcag cgcctggtgc gccggctgtg cgagcaatgc cgggaacccc
     3121 gcccgcccca gccggagatc gcgccgttgt tcgaagccaa cggggtgccg gcgccgcccg
     3181 tgctttatac ggcgcagggg tgccggcgct gcaacggcgc cggctatatg ggccgggtcg
     3241 cggtttttga actgctgacc gtcgacgact ccgtggcccg gctgatcctg ggccgcgccg
     3301 acacgcggac gatcaac
//
LOCUS       DASQVK010000077         2379 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_36232, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000077 DASQVK010000000
VERSION     DASQVK010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2379
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36232"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            42..551
                     /locus_tag="VE567_01645"
     CDS             42..551
                     /locus_tag="VE567_01645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjN domain-containing protein"
                     /protein_id="HYZ47576.1"
                     /translation="MTLEDFEEAEGESAAPIEMLENYFAAHGWSYDRQSEDEIIANVK
                     GSWTEYELRGVWRDEDHVLQFLALPDIKVAEDKRSAIYETIGLVNEQLWLGHFELWST
                     SGILLFRHAGLIEGDEPSMSLAQTETLIESAIDECERYYPVFQFVLWGGKSPREAIAA
                     ALIETQGEA"
     gene            complement(567..1739)
                     /locus_tag="VE567_01650"
     CDS             complement(567..1739)
                     /locus_tag="VE567_01650"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HYZ47577.1"
                     /translation="MAAVYPDMSDPASIRTVQIDGFSNSDRRGSRDDARQRGSRLSQA
                     VKSWFGGRDEAEVEAAAPEPSLYQRVGAFLQQNLLEPTPAHYELVYGYIREADRRLVD
                     AVDRAILREGLLTAEAAEIILAEVRTDMSAEFLADLVDKAQASLGQIAALTKESGADA
                     QAYGRALESKVADLEGSDESAAVQSLVQLTASMIARTKAAEQQLREAGKQITQLRGNL
                     TEARRIAESDALTGLANRRAFENKLRRAVLGARESGRPLSLAFCDIDHFKKINDTHGH
                     DVGDRILKFIAQRLASVSGNNCFVARHGGEEFVMLFEGMTAEQAGRIVNDVRADLEDR
                     RLVTKQNGTPIGQVSFSAGVASLTPKENGRQMLRSADQALFQAKKEGRNRVVVFGD"
     gene            1810..>2379
                     /locus_tag="VE567_01655"
     CDS             1810..>2379
                     /locus_tag="VE567_01655"
                     /inference="COORDINATES: protein motif:HMM:NF015747.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HYZ47578.1"
                     /translation="MTRDLSNIGPVWLIGCGNMAGAMLRRWLEAGLPPKAVTVVRPSG
                     IAPAPGVRTLRAVPPGEAPPRVLLLGVKPQKLDEVARAVATASGPETLVVSILAGTEL
                     EALRARLPSVGAVVRAMPNLPVAIGRGVVALYGDAGERRAELETLIGALGLVEWVATE
                     AQFEAVTSLAGCGPAFLFRFISALAEGGAA"
BASE COUNT          385 a          738 c          822 g          434 t
ORIGIN      
        1 gatcatgcgc ggcaagaggc tgctaccggg gaacggccat gatgacgctt gaagactttg
       61 aagaagctga aggggaatcg gccgccccga tcgagatgct ggagaattat ttcgccgcgc
      121 atggctggtc ctatgaccgt cagagcgagg acgagatcat cgccaatgtg aagggcagct
      181 ggaccgaata tgagttgcgt ggcgtgtggc gcgacgagga ccatgtgctg caattcctgg
      241 cgctgcccga catcaaggtg gccgaggaca agcgctccgc catctacgaa acgatcgggt
      301 tggtgaacga gcagctctgg ctcgggcatt tcgagctctg gtcgacaagc ggcatcctgc
      361 tcttccgcca tgccgggctg atcgaaggcg acgaaccttc gatgtcgctc gcccagaccg
      421 agacgctcat cgaatccgcc atcgatgagt gtgagcgcta ttatcccgtc ttccagtttg
      481 tgctgtgggg cggcaagtcc ccgcgcgagg cgattgcggc ggcgctgatc gaaacccagg
      541 gcgaagcctg agcgccggag gctggatcag tcgccgaaca cgacgacgcg gttccggcct
      601 tccttcttgg cttgaaagag cgcctggtcg gcggatcgaa gcatctggcg gccgttttct
      661 ttcggggtca gtgaggccac tcccgccgag aagctgacct ggccgatcgg ggtgccgttc
      721 tgtttcgtga ccagccggcg atcctccagg tcagcgcgca cgtcgttgac gatgcgcccc
      781 gcctgttcgg ccgtcatgcc ttcgaacagc atcacgaatt cctcgccgcc atggcgcgca
      841 acgaagcaat tgttgcccga caccgacgcc aggcgctggg cgatgaactt caggatccgg
      901 tcgccgacat catgaccgtg cgtgtcgttg atcttcttga aatggtcgat gtcgcaaaag
      961 gcgagcgaca ggggccggcc gctctcgcgc gcgcccagca cggcgcggcg caatttgttt
     1021 tcgaacgccc ggcgattggc gagtccggtg agcgcatcgc tctccgcgat ccgccgcgcc
     1081 tcggtgaggt tgccgcgaag ctgcgtgatc tgcttgccgg cctcgcgaag ctgctgctcc
     1141 gccgccttgg tgcgcgcgat catcgaggcg gtgagctgga cgagcgactg gaccgcggca
     1201 ctctcatcgc tgccttccag atcggccacc ttgctttcca gcgcgcggcc ataggcctgt
     1261 gcgtcggcgc ccgattcctt ggtcaacgcg gcgatctggc cgaggctggc ttgggccttg
     1321 tcgaccaagt cggcgaggaa ctcggccgac atgtccgtgc gcacttcggc cagaatgatt
     1381 tcagcggctt cggcggtcag cagcccctcg cgtaggatcg ctcgatcgac cgcgtcgacc
     1441 agccgccgat cggcctcacg gatataacca tagacaagct cgtaatgggc tggggtaggc
     1501 tccagcaggt tctgctgcag gaaggcgccg acgcgctgat agagagacgg ctcgggcgct
     1561 gccgcctcta cttccgcctc gtcgcggccg ccgaaccagc tcttgaccgc ctgactcaac
     1621 cggctgccgc gctgacgggc atcgtcgcgc gatccacggc gatcgctatt cgaaaagccg
     1681 tcgatctgaa cggttcgaat ggaggcggga tcgctcatat cgggatatac ggcagccact
     1741 cctcgtcttt tgatggcgat tgcttaaaaa accgttctcc attggcccgc ggagcgatac
     1801 gcggggccaa tgacgcgtga tctttcgaac atcggcccgg tgtggctgat cggctgcggc
     1861 aacatggcgg gcgcgatgct gcgccgctgg ctggaggccg ggctgccgcc gaaagcggtg
     1921 acggtggtgc ggccgagcgg catagcgcca gcgccagggg tacgcacgct tcgcgccgtg
     1981 cccccaggcg aagctccgcc gcgcgtgctg ttgcttggcg tcaagccgca gaagctggac
     2041 gaggtggccc gcgcggtcgc aaccgcgagc gggccggaga cgctggtggt ttcgatcttg
     2101 gccgggacgg agttagaagc gttgcgcgcg cggctgccga gcgtgggcgc ggtggtgcgt
     2161 gccatgccca acctgccggt cgcgatcggg cgcggcgtgg tggcgctcta tggcgacgct
     2221 ggcgagcggc gcgcggagct ggagacgctg attggcgcgc tcgggctggt cgaatgggtg
     2281 gcgacggaag cgcagttcga agcggtgacg agcctcgccg gctgtgggcc cgcattcctg
     2341 ttccgcttca tctcggcgct tgccgaaggg ggcgcggcg
//
LOCUS       DASQVK010000078         6320 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_36246, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000078 DASQVK010000000
VERSION     DASQVK010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6320
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36246"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..362)
                     /locus_tag="VE567_01660"
     CDS             complement(<1..362)
                     /locus_tag="VE567_01660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013846662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HYZ47579.1"
                     /translation="MARLTPIQVGPVRIETPVILAPMTGVTDLPFRRIVRRYGSGLNV
                     TEMIASQAMIRETRQSLQKAAWDPIEEPVSMQLAGCAPHEMAEAAKLNEDRGAAIIDI
                     NMGCPVKKVVNGDAGSAL"
     gene            428..1579
                     /locus_tag="VE567_01665"
     CDS             428..1579
                     /locus_tag="VE567_01665"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017502119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HYZ47580.1"
                     /translation="MSKTVALIVAAGKGERLGAGVPKQFLRLGGKALVAHAYDGLAAH
                     PAIEGVFVVTGADQHEQLADALGARPLLGVATGGASRRESVRAGLDAIGGAERVLIHD
                     AARPFVPATVVDRLLSALEDRPGAVPAMPVADTLARSGPALGEVVDRSQLLRVQTPQA
                     FRYADIMTSHRQWSTATEPTDDAQMARAAGFEVAIVDGDPMLDKITRPEDFAAAQARL
                     GQRVFRTGMGFDVHRLAEGEELWLGGIRIPHAKGLLGHSDADVALHALTDAILGAIGA
                     GDIGTHFPPSEPQWRGAPSSRFLEHAAALVEATGGRIEHVDVTIICEAPRIGPYREAM
                     RARIAFLLRLPESRISMKATTTERLGFTGRGEGIAAQAVATISSCETSQ"
     gene            1576..2133
                     /locus_tag="VE567_01670"
     CDS             1576..2133
                     /locus_tag="VE567_01670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007689197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HYZ47581.1"
                     /translation="MTDDAPAQHPHADILLPRVLVDKARQVIEANRAAGRRIAVAESC
                     TGGLVGAALTEIPGSSDVFEASFVTYSNDAKIHLLSVALDVIETFGSVSIACAWAMAQ
                     GALNKAQVDVTVAITGIAGPEGGSEKKPVGTVVFARAERDAPPDRVKAERREFGDLGR
                     GGIRLQAALCALELLMPDAPALDEA"
     gene            complement(2070..2555)
                     /locus_tag="VE567_01675"
     CDS             complement(2070..2555)
                     /locus_tag="VE567_01675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HYZ47582.1"
                     /translation="MPRHTETRHLPYSPEQMFDLVADVGRYAEFLPWVAAVRVRSNSA
                     TEMVADLIVGFKALRERFTSRVVKERPHHIHVDYLEGPLKHLSNDWKFRSDGKGGTFV
                     DFCVDFAFKNRVFEALAGQMFDMALRRMINAFEERAKTLYASSSAGASGISSSSAQSA
                     A"
     gene            complement(2557..3474)
                     /gene="lipA"
                     /locus_tag="VE567_01680"
     CDS             complement(2557..3474)
                     /gene="lipA"
                     /locus_tag="VE567_01680"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HYZ47583.1"
                     /translation="MSEADPVLRTPRVRKPDWIRVKAPTSVGFAETRQLMRRLNLATV
                     CEEAACPNIGECWTKKHATVMILGDTCTRACAFCNVKTGMPRAVDAKEPQHVADAAAE
                     LGLEHIVVTSVDRDDLTDGGASQFVKVIEALRRTTPSTTIEILTPDFRNKHEAAVEAI
                     VAARPDVYNHNLETVPRLYPTIRPGARYYASLRLLESVKKLDPSIFTKSGIMLGLGEE
                     RLEVHQVMDDMRSADVDFLTMGQYLQPTPRHAKVAEFVPPKAFDAYAAIARAKGFLLV
                     ASSPLTRSSYHAGDDFARLRAARESKLAR"
     gene            3541..4179
                     /locus_tag="VE567_01685"
     CDS             3541..4179
                     /locus_tag="VE567_01685"
                     /EC_number="4.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004089 - carbonate dehydratase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HYZ47584.1"
                     /translation="MNNTGFDDLIAGYRRFRDTGWAQQRERWAELKDGQTPKVMVIAC
                     SDSRVDPSIIFDASPGEMFVVRNVAALVPPFELGGLRHGVSSALEFAVTQLEVPEIVV
                     MAHGACGGVNAALTRRFCDAPPGEGGFIARWMSMLDEARDRIVAELGEGPDAIRALEL
                     ESVKVSIANLRTFPCVPVREADGRLKIHGAYFAISDGILHVLDEATGRFSPA"
     gene            4243..4725
                     /locus_tag="VE567_01690"
     CDS             4243..4725
                     /locus_tag="VE567_01690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47585.1"
                     /translation="MLKRLIAGAALLAIAAPLAAQNAPPTNPPTQPGTKEDPGTPRAP
                     LPTDRGYDKPQVRTEAINAPNRGETKAANSATSGSSASAATIQADLQAQYNADMAAWL
                     DAMRSRDARIAANAAQYDRQQRAYADAMYVWRMQVRDCERGFTFACNRPTPNPADFMR
                     "
     gene            complement(4761..4994)
                     /gene="rpmE"
                     /locus_tag="VE567_01695"
     CDS             complement(4761..4994)
                     /gene="rpmE"
                     /locus_tag="VE567_01695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HYZ47586.1"
                     /translation="MKKGIHPDYHTIKVQMTDGTVYETRSTWGKEGDTLALEIDPLAH
                     PAWTGGTQRLLDQGGQVARFNKRFGGLTLGGKK"
     gene            complement(5077..5553)
                     /gene="fabZ"
                     /locus_tag="VE567_01700"
     CDS             complement(5077..5553)
                     /gene="fabZ"
                     /locus_tag="VE567_01700"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019171 -
                     (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HYZ47587.1"
                     /translation="MSEAGEGSATGPLDVTRVLAALPHRYPMLLVDRVEELVLDRSIA
                     AIKAVTFNEGFFQGHFPGRPIMPGVLIVEALAQAAGVLAVESLGLSGSGKLVYFMAIE
                     DAKFRKPVEPGVLLRLEVEFVQKRARVCKFAGRALVDGHVAAEANFTAMIADSPSA"
     gene            complement(5556..6149)
                     /locus_tag="VE567_01705"
     CDS             complement(5556..6149)
                     /locus_tag="VE567_01705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HYZ47588.1"
                     /translation="MNTSLKAATAALIVLAPAAASAQKLSPAVIAVVDTDRILRECNA
                     CKAAQTQLQGQLQQLQQHQQQLAGPIQTEAQSIQTAVNALQGKQPDAALKQRVQALQT
                     KQNQANQELQRQEQTLRSTQQNVVQQINQRLDPIVQAQLAAKGATIVVDRNATLAFAP
                     AIDITNDVLAQLNQQLPSVSVTPLPQQQPAQQQPQGR"
     gene            complement(6149..>6320)
                     /locus_tag="VE567_01710"
     CDS             complement(6149..>6320)
                     /locus_tag="VE567_01710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HYZ47589.1"
                     /translation="FSEAFLGDTPKPRVSVGFGVNWNSPFGPFRIDIAKALVTQKGDN
                     TQLVTFNVGTQF"
BASE COUNT         1048 a         2064 c         2082 g         1126 t
ORIGIN      
        1 atgagcgcgg agccagcatc gccgttgacc actttcttca ccgggcagcc catgttgatg
       61 tcgatgatcg cagcgccacg atcctcgttg agcttcgccg cttcggccat ttcgtgaggc
      121 gcgcagccgg cgagctgcat cgataccggc tcttcgatcg ggtcccaggc cgctttctgg
      181 agcgattggc gcgtctcccg gatcatcgcc tggctggcga tcatctcggt gacgttcagc
      241 ccagacccgt agcggcgcac gatccgccgg aacggcagat cggtgacgcc ggtcatcggc
      301 gccaggatca ccggcgtctc gatccgcact ggaccgacct ggatgggcgt caaacgtgcc
      361 atgagagcgc ggccacatag cgattgcgcc tcttttcggc aaggcgagcg cccgctaacg
      421 ggcggcggtg agcaagaccg tcgccctgat cgtcgccgcc ggcaaaggcg aacgcctggg
      481 cgcaggtgtg cccaaacagt ttctgcggct tggcggcaaa gcgcttgtcg cccatgccta
      541 tgacgggctc gccgcccatc ctgcgatcga gggtgttttc gtcgtgaccg gggccgacca
      601 gcatgaacag ctcgccgacg ctcttggcgc ccgcccactg ctgggtgtcg cgactggcgg
      661 cgcgagccgg cgcgagtcgg tccgcgccgg gctggacgcg attggtggcg cggagcgcgt
      721 gctcatccac gacgccgctc ggccgttcgt tcccgccacg gtcgtcgatc gcctgctgtc
      781 ggcgcttgag gaccggccgg gcgcagtgcc ggcaatgcct gtggccgaca cgctcgcgcg
      841 atccggaccc gcgctcggcg aggtcgtcga tcgctcgcag ctgctgcggg tccagacccc
      901 ccaggccttt cgctatgccg acatcatgac gtcgcaccgg caatggagca ccgcaaccga
      961 gccgacagat gatgcgcaga tggcccgcgc cgccggcttc gaggtcgcga tcgtcgatgg
     1021 agatccgatg ctcgacaaga tcacgcggcc cgaggatttt gccgccgccc aggcccggct
     1081 cggccagcgg gtgttccgca ccggcatggg cttcgacgtc caccggctgg ccgaagggga
     1141 ggagctgtgg ctgggcggca ttcgcatccc gcatgccaag ggcctgctcg gccattccga
     1201 cgcggacgtt gcgctccatg cgctgacgga cgccatcctg ggcgcgatcg gcgccggcga
     1261 tatcggcacg catttcccgc cgagcgagcc ccagtggcgc ggcgctccct cctcccgttt
     1321 tctagagcac gcggctgcgc tcgtcgaagc gacgggcggg cggatcgaac atgtcgatgt
     1381 cacgatcata tgcgaagcgc ccaggatcgg cccctatcga gaggcaatgc gtgcacggat
     1441 cgcgttcctg ttgcggctgc ctgagagcag gattagcatg aaggctacca ccaccgaacg
     1501 cctgggcttc actggacgcg gcgaaggcat cgctgcccag gccgtcgcca cgatcagctc
     1561 ttgcgagacc tctcaatgac cgacgacgcc ccagcccagc atccccacgc cgatatcctg
     1621 ctgccgcggg tgctggtcga caaggcgcgc caggtgatcg aggccaaccg cgcggccgga
     1681 cgtcggattg cggttgcgga aagctgcacg ggcgggttgg tcggcgccgc gctgaccgaa
     1741 atccccggct cgtccgacgt gttcgaggca agcttcgtca cttattccaa cgacgcgaaa
     1801 atccacttgc tgtcagtggc gctcgacgtg atcgagacgt tcggctcggt gtcgatcgcc
     1861 tgtgcctggg cgatggccca aggcgcgctc aacaaggccc aggtcgatgt cacggtcgcg
     1921 atcacgggca tcgccgggcc cgaagggggc agcgagaaaa agccggtggg cactgtagtc
     1981 ttcgcgcgcg ccgaacgcga cgcaccgccg gaccgggtca aggccgaacg gcgcgagttc
     2041 ggagatctgg gccgcggcgg gatccgcctt caggcggcgc tttgcgcgct ggagctgctg
     2101 atgcccgacg cgcccgcgct tgacgaagca tagagcgttt tcgcccgttc ttcgaaggcg
     2161 ttgatcatcc ggcgcaacgc catgtcgaac atctgtcccg ccagggcctc gaacacccgg
     2221 ttcttgaacg cgaaatcgac gcagaaatcg acaaaggtgc cgcccttccc gtcggagcgg
     2281 aatttccagt cgttgctcaa gtgcttgagc gggccttcga gataatcgac atggatgtga
     2341 tgcggccgct ccttcacaac gcggctggtg aagcgctcgc gcagcgcctt gaagccgacg
     2401 atcaggtccg cgaccatctc ggtagcgcta ttcgaacgga cccgcaccgc cgccacccaa
     2461 ggcaggaact ctgcataacg tccgacgtcg gcgaccagat cgaacatctg ttccgggcta
     2521 tagggcaaat gccgggtttc ggtgtgtctg ggcatcttag cgggcgagct tggattcccg
     2581 ggcggcgcgg agacgcgcga aatcgtcccc tgcgtggtag ctggagcgcg tcagcggcga
     2641 cgaagccacc agcaggaacc ctttagcgcg cgcgatcgcg gcataggcgt cgaacgcctt
     2701 gggcgggacg aattccgcaa cctttgcgtg gcgaggcgtc ggctgcagat attggcccat
     2761 cgtcaggaaa tcgacatcgg ccgagcgcat gtcgtccatc acctggtgaa cctccagccg
     2821 ttcctcgccc aagccaagca tgatgccgga cttggtgaag atcgacggat cgagcttctt
     2881 cacgctctcc agcaggcgca gcgaggcgta atagcgcgcc ccgggccgga tcgtcggata
     2941 gagtcgaggc accgtttcca gattgtgatt atagacatcg ggccgcgcgg ccacgatcgc
     3001 ttcgacagct gcctcgtgct tgttacggaa atcgggcgtc aggatctcga tcgtggtgct
     3061 gggcgtggtc cgccgcagcg cttcgatgac tttcacaaac tgcgacgcgc cgccatcggt
     3121 caggtcatcg cgatcgaccg aagtcacgac gatatgctcc agccccagtt cggccgcggc
     3181 atcagcaacg tgctgcggct ccttggcgtc cacggcgcgc ggcatgccgg tcttcacgtt
     3241 gcaaaaggcg caggcgcggg tgcaggtgtc gcccaggatc atcaccgtcg cgtgcttctt
     3301 ggtccagcat tccccgatgt tcgggcaggc cgcctcctcg cacacggttg cgaggttgag
     3361 gcggcgcatc agctgcctgg tttcggcaaa gcctacgctg gtcggcgcct tcacccggat
     3421 ccagtcgggt ttgcggacgc gcggggttct caagacagga tcggcttcgc tcatggcagg
     3481 cagatagcga gccgagcccc ggcttgccag ccctgcggct cgtcccgtaa cggctgggac
     3541 atgaacaaca ctggcttcga tgacctgatc gccggctatc gccggttccg cgacactggt
     3601 tgggcgcaac agcgcgaacg ctgggcggag ctgaaggacg gccagacccc caaggttatg
     3661 gtgatcgcct gttccgacag ccgggtcgac ccgagcatca tcttcgatgc ctctccgggc
     3721 gagatgttcg tcgtccgcaa cgtcgcggcg ctggtgccgc cgttcgagct tggagggctg
     3781 cgccacggcg tctcgtccgc gctcgagttc gccgtcactc agcttgaggt tccggagatc
     3841 gtcgtgatgg cccacggcgc gtgcggcggg gtcaacgcag cgctgacgcg gcgcttctgc
     3901 gatgctccgc ccggcgaagg cgggttcatc gctcgctgga tgtcgatgct tgacgaagcg
     3961 cgcgaccgga tcgtcgccga actcggggaa ggcccggacg cgatccgcgc gctggaactc
     4021 gaatccgtca aggtcagcat cgccaatctg cgcaccttcc cctgcgtccc cgtgcgcgag
     4081 gcggatggac ggctgaagat ccatggcgcc tattttgcga tctcggatgg gattctccac
     4141 gtgctcgacg aagcgaccgg tcggttcagc ccggcctgac gactcggaac gggagcgccg
     4201 cttggccgtt gtccgctcac gttcgttgac aggagagaac gaatgctgaa gcgcctcatc
     4261 gcgggcgcgg cattgttggc gattgccgcg ccgctcgccg cccagaatgc cccgcccacc
     4321 aatccgccca cgcagccagg cacgaaggaa gatccgggca cgccccgcgc gccgctgcct
     4381 accgatcgcg gctacgataa gccgcaggtc cgcaccgaag cgatcaacgc ccccaatcgt
     4441 ggcgaaacga aggcggcgaa cagcgcgacc tcaggcagtt cggcaagcgc cgcaacgatc
     4501 caggccgatc tgcaagccca gtataatgcg gacatggccg cctggctgga cgcaatgcgc
     4561 agccgcgatg cgcggatcgc agccaatgcg gcgcaatatg accgtcagca gcgcgcttat
     4621 gccgatgcga tgtatgtctg gcggatgcaa gtccgcgatt gcgagcgcgg cttcaccttc
     4681 gcttgcaacc ggccgacgcc gaatccggcg gatttcatgc ggtaagccga ccctcccctg
     4741 caaaccaggg gaggaaatcg ttacttcttg ccgccgagcg tgaggccgcc gaagcgcttg
     4801 ttgaagcgcg cgacctggcc gccttggtcg aggaggcgct gcgtgccgcc ggtccaggcc
     4861 gggtgcgcga gcggatcgat ttccagcgcc agcgtgtcgc cttccttgcc ccaggtggag
     4921 cgggtttcgt acacggtgcc gtccgtcatc tgcaccttga tggtgtggta atcggggtga
     4981 ataccctttt tcatgtcaca atctccggaa cggctggttt ccgaccagcc aaggaacgcg
     5041 cgcctgtagt tgagaatgcg gcaatattca accggcttac gctgagggcg agtcagcgat
     5101 cattgcagta aaattcgctt ccgcagccac gtgaccgtcg accagcgcgc ggccggcgaa
     5161 tttgcagacc cgcgcgcgtt tttgcacgaa ttcgacttcc agccgcagca gcacgccggg
     5221 ctcgaccggc ttgcggaact tcgcgtcttc gatcgccatg aaatagacga gcttacccga
     5281 gcccgagagc ccgagagatt caaccgccag cacgcccgcc gcttgcgcca gcgcctcgac
     5341 gatcagcacg cccggcataa ttggccggcc ggggaagtgg ccttggaaaa agccttcgtt
     5401 gaacgtcacc gccttgatgg ccgcaatcga ccggtcgagg accaattcct cgacccggtc
     5461 gaccagcagc atcggatagc ggtggggaag tgctgccagc actctggtga cgtccagagg
     5521 gcccgtcgcg ctcccctcgc ccgcttcgga catgcttagc ggccttgcgg ctgctgttgc
     5581 gcgggctgct gctgcggcag cggagtgacg ctgacgctcg gcaactgctg gttcaactga
     5641 gccagcacgt cgttggtgat gtcgattgcc ggcgcaaagg cgagcgttgc gtttcggtcg
     5701 acgacgatcg tcgccccttt ggccgcaagc tgggcctgca cgattgggtc cagccgctga
     5761 ttgatctgct gcacaacatt ttgctgggtg gaacggagcg tctgctcctg ccgctggagc
     5821 tcctggttcg cctggttctg cttcgtctgc aatgcctgga cgcgctgttt cagtgcggca
     5881 tcgggctgct tgccctgcag ggcattgacc gccgtctgaa tcgactgcgc ctcggtctgg
     5941 atcggccctg cgagctgctg ctggtgctgc tgcagctgct ggagctggcc ctgcagctgc
     6001 gtctgcgccg ccttgcaggc attgcactcg cgcaggatgc ggtcggtgtc gaccacagcg
     6061 atcacggccg ggctcagctt ctgcgcgctg gcggctgcgg gggcgaggac gataagcgcg
     6121 gccgtggccg ccttcaggga cgtgttcatc agaattgggt tcctacgttg aaagtgacga
     6181 gttgagtgtt gtcgcccttc tgggtgacga gcgctttggc gatgtcgatg cggaacggcc
     6241 cgaagggcga gttccaattg acgccgaagc cgaccgagac gcgcggcttg ggcgtatccc
     6301 ccaggaacgc ttcggagaaa
//
LOCUS       DASQVK010000079         2142 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_352406,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000079 DASQVK010000000
VERSION     DASQVK010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2142
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_352406"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..305)
                     /locus_tag="VE567_01715"
     CDS             complement(<1..305)
                     /locus_tag="VE567_01715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017670395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYZ47590.1"
                     /translation="MQLAFRRRLLASSVLIGASMLSTAAFAQTQTAEAAPAADEGTIV
                     VTGSLITNPNLERSTPVNVTTSEEVELRQTNVAEQLLREIPGVVPSIGSAVNNGNGGA
                     "
     gene            549..1064
                     /locus_tag="VE567_01720"
     CDS             549..1064
                     /locus_tag="VE567_01720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47591.1"
                     /translation="MIRFASAAALFALVSVPAAAADEPPAAIRALGACRAIADNAQRL
                     ACYDREAATLVQSVEKKETVVLDRAEVKKAKRSLFGFSLPKLPFFGDGKDTKEEAEFQ
                     QIEAPIKTVRSMGFGKFRFTIDDGAVWETTEGLNAFPKPGEKVVIKKGVMGGYFIRFE
                     GTRSVRGMRVS"
     gene            complement(1080..1922)
                     /locus_tag="VE567_01725"
     CDS             complement(1080..1922)
                     /locus_tag="VE567_01725"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017501732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HYZ47592.1"
                     /translation="MSLFLAIAVAAAAPAAADFHLFGKLEQGGIAYGTAPAGTVTLKL
                     GTDMIPVARDGRFMVGFDRDAPPSLTLEATLSNGAVIARQLAIAPRTWKLERVDVPKR
                     PSVTNEEFERLRAPEVARINAARAVDAASDGWRQRFAWPAQGRISGVFGSQRIYRGGE
                     PGAYHSGVDIAGGAGAPVTAPADGVVVLAADKPFTLEGNLLIIDHGMGLNSAFLHLSR
                     IDVKEGEHVKKGQSIGAIGSSGRASGPHLHWAIKWRAARLDPMALTGPMPGQDMTKVP
                     VTGD"
     gene            complement(1919..2119)
                     /locus_tag="VE567_01730"
     CDS             complement(1919..2119)
                     /locus_tag="VE567_01730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2093 domain-containing protein"
                     /protein_id="HYZ47593.1"
                     /translation="MLMFNRSQPARLYYLPNGYRVLAQGDHVVCAVSGEKIPLDALRY
                     WSVERQEAYATPEIATRALSGK"
BASE COUNT          365 a          682 c          714 g          381 t
ORIGIN      
        1 gcgccgccgt tgccgttgtt cacggccgag ccgatcgagg gtacgacgcc cgggatctcg
       61 cggagcagct gctcggcgac gttggtctgg cggagctcga cctcttccga ggtggtcacg
      121 ttgaccgggg tcgaacgctc aaggttcggg ttggtgatga gcgatccggt gacgacgatg
      181 gtgccttcat ccgcggcggg cgccgcctca gccgtctggg tctgcgcgaa agcggccgtg
      241 ctgagcatcg aggcgccgat cagcaccgaa gaggccagca ggcgccgacg aaatgcaagc
      301 tgcatagttt tcttcccctt tgatgtggcc gggctttgcc ggtcgcacat ggtggcatag
      361 ctgcaaacga agctatcacg ccggttacta ggcgaaacgg ccatggcaga acaacgcttc
      421 ctctcggcga ttgcgagttt ttgccaccaa gtgtagcatt tcggtcacag gtaaatgcga
      481 gggcgcttgc cccctccgaa tcgcccattt aggacggaag gcgttcgtcc gcttcggggt
      541 tcggcatcat gatccgattc gcgtccgccg ccgcgctttt tgcgctcgtt tccgtccccg
      601 ccgccgccgc ggatgagccg cccgccgcca ttcgtgcgct cggcgcgtgc cgtgcgattg
      661 ccgacaacgc ccagcgcctt gcctgttatg accgcgaggc ggccacgctc gtccagtcgg
      721 ttgaaaagaa ggaaacggtc gtcctcgaca gggcggaggt gaagaaggcg aagcggtcgc
      781 tgttcggctt cagcctgccc aagctcccat ttttcggcga cggcaaggac acgaaggaag
      841 aagccgagtt ccaacagatc gaggcgccca tcaagaccgt gcgcagcatg ggctttggca
      901 aattccggtt cacgatcgac gatggcgccg tgtgggaaac gaccgaaggg ttgaacgcat
      961 ttcccaagcc cggagagaag gtcgtgatca agaaaggcgt gatgggcggc tatttcattc
     1021 gtttcgaggg tactcgctcc gtcagaggca tgcgagtgag ctgaaccgta aatcgggcgt
     1081 cagtcgcccg tcaccggcac tttggtcatg tcctggcccg gcatggggcc ggtgagcgcc
     1141 atcggatcga ggcgggcggc gcgccatttg atcgcccagt gcaggtgcgg cccgcttgcg
     1201 cggccggagc tcccgatcgc gccgatcgac tggcccttct tcacgtgctc gccttccttc
     1261 acgtcgatgc gcgacaggtg caggaacgcg ctgttgaggc ccatgccgtg atcgatgatc
     1321 agcagattgc cttccagggt gaacggcttg tcggcggcca gcacgaccac gccgtccgcc
     1381 ggcgcggtga ctggcgcccc ggcgccgccg gcgatgtcga cgcctgaatg ataggcgccg
     1441 ggttcgccgc cgcgatagat gcgctgggat ccgaacacgc cgctgatccg gccctgcgcc
     1501 ggccaggcga agcgctgccg ccagccgtcg ctcgccgcat cgacggcgcg ggcggcattg
     1561 atgcgagcca cctcgggcgc gcgcagccgt tcgaattcct cattggtgac gctcggccgc
     1621 ttgggcacgt cgacgcgctc cagcttccag gtgcgcggag cgatggcgag ttggcgggcg
     1681 atcactgcgc cgttcgacaa ggtcgcttcc aatgtgagcg agggtggcgc gtcgcggtcg
     1741 aacccaacca tgaaccgccc gtcgcgcgcg accggaatca tatccgtgcc gagcttcagg
     1801 gtgacggtgc ccgccggcgc ggtgccatag gcgataccgc cctgttcgag cttgccgaac
     1861 aaatggaaat cggcggccgc gggcgcagct gccgctacgg caatcgccag aaacaggctc
     1921 acttgccgct cagagcgcgg gtggcgatct ctggcgtcgc ataggcctcc tgccgctcga
     1981 ccgaccaata gcgaagcgca tcgagcggga tcttctcgcc gctcaccgcg cagaccacat
     2041 ggtcgccctg cgcaagcacg cgatagccgt tcgggagata ataaagccgg gccggctggc
     2101 tgcggttgaa cattaacatc gtcgacaacc tttagagtag cg
//
LOCUS       DASQVK010000080         4977 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_131208,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000080 DASQVK010000000
VERSION     DASQVK010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4977)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4977
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131208"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..230
                     /locus_tag="VE567_01735"
     CDS             <1..230
                     /locus_tag="VE567_01735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007687467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47594.1"
                     /translation="RECDGQLELEVSDTGGDGPPPGPGTGVGLANVRERLRLSFGEES
                     EMRVTPAREGFSVVLTMPLRTAAEPVLTIAA"
     gene            complement(397..1176)
                     /locus_tag="VE567_01740"
     CDS             complement(397..1176)
                     /locus_tag="VE567_01740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TorF family putative porin"
                     /protein_id="HYZ47595.1"
                     /translation="MRTSFQALTLGLLLCSSAAMAEDAPASDFTITGAATIASQYRFR
                     GISQSDNKPVVQGTFTVAHSSGFYISTWGSSASAGNSTVNIGGTEIDVYGGWTHSLGN
                     SGVTVDVGGYGYIYPGASALSYYEIYGSLAKTFGPVSAKAGVYYAPSQSALDGYATNH
                     NVYVYGELSGGIPGTPISLHGHVGHTGGAFDYTKDYIDYTVGAAVKWKALTFDLSLVG
                     TNVSKSDARANPFPDQTGTLNPFETRRAAKPVLVGSVTASF"
     gene            complement(1374..2783)
                     /locus_tag="VE567_01745"
     CDS             complement(1374..2783)
                     /locus_tag="VE567_01745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010214441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HYZ47596.1"
                     /translation="MGMKLKFGAAALLGLFAAMPAWAQTAPIKAPTAEQMATMVNKGD
                     VAWMLTSSALVLMMSVPALALFYGGLVRTKNMLSVLMQVFMIVSVASLVWVGWGYSMA
                     FTGGSPFVGGFSKAFLQGVSASTYAATFSNNVYLPELVYVVFQMTFACITPALIVGAF
                     AERVKFTPLMIFMVLWLTVIYFPIAHMVWYFAGPDFLPDAPTDSGYLYAMGALDFAGG
                     TVVHINAGIAGLVGCLMIGKRLGFGREATPPHSLTMTMIGASLLWVGWFGFNAGSNLE
                     ANGVTAVAFINTFVATAAAAISWAIVEQVKHGKPSMLGAATGAVAGLVAITPASGFGA
                     PGTSIVLGLIVSPICYFFVSTVKNRLKYDDTLDVFGVHCVGGIVGAIATGIVADPALG
                     GQGFFDYTKFPAVPGAYDMGAQVIIQIKAVLLTLVWSGLGSAILYFIVDKIFGLRPSE
                     EAEREGLDLAEHGERAYNH"
     gene            complement(2794..3132)
                     /locus_tag="VE567_01750"
     CDS             complement(2794..3132)
                     /locus_tag="VE567_01750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HYZ47597.1"
                     /translation="MKLVTAIIKPFKLDEVREALTALGVSGLTVSEVQGFGRQKGQKE
                     IYRGAEYETNTVPKIKVETVCPANMAERVVEAIQSAAHTGSIGDGKIFVMDVGHAVRI
                     RTGETDDAAI"
     gene            3365..3679
                     /locus_tag="VE567_01755"
     CDS             3365..3679
                     /locus_tag="VE567_01755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HYZ47598.1"
                     /translation="MSTGAAQAQLDPSFAQCAACHTVKPGENRLGPSLYKVVGRPKAS
                     APGFAYSPAMKAQKGAWSEQELDAFITNPRAKVPGTRMTYAGMPDAAKRARLIAWLKT
                     IK"
     gene            complement(3672..4430)
                     /locus_tag="VE567_01760"
     CDS             complement(3672..4430)
                     /locus_tag="VE567_01760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011950966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYZ47599.1"
                     /translation="MTPEFGSPRTAIVTGGARRIGAAISRALAADGWQVLIHHHTSDA
                     SALAAELGAAAVRADLADPAAAETIVAALAGLPPPALLVNSAAGFELDQFEDFTPEQW
                     DRHMAVNARAPALLTRAFARAVPEGQGALVVNLLDAKLAQPNPDFFTYTASKMAFAGV
                     TELSARLLAPRGIRVCGIAPSVTLVSGPQTRANFDAVHRLNALERGVTVEQIVAALRF
                     VIASPTLTGQTIVLDGGQRFLGLARDVQFLGELT"
     gene            complement(4427..>4977)
                     /locus_tag="VE567_01765"
     CDS             complement(4427..>4977)
                     /locus_tag="VE567_01765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010215802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HYZ47600.1"
                     /translation="RMVDLAAAENLREPFLTLNPRGTVPVLELDDGACIADSVAICRY
                     FEALHPDPPLFGREPLEIARIEYWTRRVEAEGYAGVVYAFRNRSKHMTDRALSGFWPP
                     VPQLPELAMRGQNMWGWCVEMLDRHLEGREWIATDYYSFADLTALITVDFAKATRLSD
                     GKLPPALAAWHARAAARPSAMA"
BASE COUNT          968 a         1593 c         1608 g          808 t
ORIGIN      
        1 cgcgcgaatg cgacggccag ctggagctgg aggtcagcga caccggcggc gatggcccgc
       61 cgccggggcc cgggacgggc gtcggcctcg cgaacgttcg cgagcgcctg cgcctgagct
      121 ttggcgaaga gagcgaaatg cgagtcacgc ccgcgcgaga gggtttcagc gtggttctga
      181 caatgccgct gcggacggca gccgagccgg tcctgaccat cgccgcctga gaaaaagagc
      241 ccggcaggag aaatcccgcc gggctctgag gataagcatt cttgcgaatg cctcgggtcg
      301 cgcaacatcg atgcgcgccc gcggcgattc gagacacgaa gcgtcgacca atgcgtcggc
      361 cggtgcgacc gaatcgcgca ccggccttcg acgatctcaa aacgaagcag tgaccgatcc
      421 cacgagcacc ggctttgcgg cccggcgcgt ctcgaacgga ttgagcgtgc cggtctggtc
      481 cgggaaggga ttggcgcggg cgtcgctctt gctgacgttg gtgccgacca gcgacaggtc
      541 gaacgtcagc gccttccact tcaccgcggc gccgaccgta tagtcgatat agtccttggt
      601 gtagtcgaac gccccgccgg tatggccgac atggccatgc agggagatcg gcgtgcccgg
      661 aatgccgccc gacagctcgc catagacata gacattgtgg ttcgtggcat agccatccag
      721 cgcgctttgg ctcggcgcgt aatagacgcc ggccttcgct gacaccgggc cgaaggtttt
      781 ggcgagcgag ccgtagattt cgtaataact aagcgccgat gcgccaggat agatatagcc
      841 gtaaccgccg acatcgaccg tcacgccgct gttgcccaga ctatgcgtcc agccgccata
      901 gacgtcgatt tcggtgcccc cgatattgac cgtgctgttg cccgcgctcg cgctcgaccc
      961 ccaggtcgag atgtagaaac cggacgaatg ggcgaccgta aacgtgcctt gcacgacggg
     1021 cttgttgtcc gactgcgaaa tgccacgaaa ccggtactgg ctagcaatgg tcgcggcacc
     1081 ggtgatcgtg aaatcggatg ccggtgcgtc ctcggccatg gccgcggaag agcagagaag
     1141 aaggcccaat gtcagggcct gaaaagacgt gcgcatagat ccccactttg ctcgggtttc
     1201 gtcacgtcca gcctgcgccc ggccgttcca cctcatgttc gggcggggtg cgaccgtgac
     1261 gggatgatga catgcttttc gcggcgcaca agcaaaaaaa tgctgcagtg cagcataaaa
     1321 aatggccggc gagttgcccc gccggccagt cagtccctcg caggtggacc tcgtcaatgg
     1381 ttgtaggcgc gctccccatg ctcggcgagg tcgagccctt cgcgctccgc ctcctcgctc
     1441 ggccgcagcc cgaaaatttt gtcgacgatg aagtatagga ttgccgatcc gaggcccgac
     1501 cagaccaggg tcaacagaac cgccttgatc tggatgataa cctgcgcacc catgtcatag
     1561 gcacccggca cggcgggaaa cttggtatag tcgaaaaagc cctgcccacc cagcgcagga
     1621 tcggccacga tgccggtggc gatcgcgccg acgatgccgc cgacgcagtg cacgccgaac
     1681 acgtcgagcg tgtcgtcata cttcagccgg ttcttcaccg tggagacgaa gaagtagcag
     1741 atcggggata cgatgaggcc caacacgatc gatgtgcccg gcgcgccgaa gcccgaggcc
     1801 ggggtgatcg cgaccaggcc cgccaccgcg ccagtggccg cgcccagcat cgagggctta
     1861 ccgtgcttca cttgctcgac gattgcccag ctgatcgctg ccgccgcggt tgcgacgaag
     1921 gtgttgatga aagcaaccgc cgtgacgccg ttcgcttcga ggttggagcc ggcattgaag
     1981 ccgaaccagc caacccatag cagggaggcg ccgatcatcg tcatggtcaa ggagtgcggg
     2041 ggcgtcgcct cgcggccgaa gcccaggcgc ttgccgatca tcaagcagcc gaccagaccg
     2101 gcaatcccgg cattgatgtg cacgacggtc ccgccggcaa agtcgagcgc gcccatagca
     2161 tagagatagc cgctgtccgt cggcgcgtcg ggaaggaagt ccggcccggc gaaataccag
     2221 accatgtgcg caatggggaa atagatgacc gtcagccaga ggaccatgaa gatcatgagc
     2281 ggggtgaact tcacacgctc ggcaaaggcg ccgacgatca gtgccggcgt gatgcaggcg
     2341 aaagtcatct ggaagacgac atagaccagt tccggcagat acacattgtt gctgaaggtc
     2401 gcagcatagg tgctcgccga tacgccctgt aggaacgcct tcgaaaagcc gcccacgaag
     2461 ggcgagccgc cggtaaaggc catgctgtag ccccagccga cccagacaag cgacgcaacg
     2521 ctgacgatca tgaagacttg catcagcacc gatagcatgt tcttggtgcg gaccagaccg
     2581 ccatagaaca aagccagggc cggcaccgac atcattagca ccagtgcgga cgaggtcagc
     2641 atccaggcga cgtcgccctt gttgaccatc gtcgccattt gctcggcggt cggcgctttg
     2701 atgggagccg tctgcgccca ggccggcatc gccgcgaaca ggccgagaag cgcagcggcc
     2761 ccgaatttca gcttcattcc cattcccccg aaatcagatc gccgcatcgt cggtctcccc
     2821 ggtacggatc cggacggcgt ggccgacgtc catcacaaag attttgccgt cgccgatcga
     2881 acccgtgtgc gcggccgact gaatggcctc gaccacgcgt tcggccatgt tggccgggca
     2941 cacggtctcg accttgatct tgggaaccgt gttcgtctcg tactcggcgc cgcgatagat
     3001 ttccttctgt cccttctggc ggccgaagcc ctgaacttcg ctcacggtca gccctgacac
     3061 gcccaaggcg gtcagcgctt cgcgcacctc gtccaacttg aagggtttga tgatggcagt
     3121 gaccagtttc acgcccgtct ccccgattaa cccgagcgaa atgtttcaca tgggttacgg
     3181 ggtcgtcaac ataaaattgt gcatgtgcga acagatttgt ttcgcagttg cgggatcggt
     3241 aacatctgat accagtttat tgcgcgcagg cggttacttg ccattcaggc ataaccactt
     3301 agagcaaacg cgttgcacca ctggagggct tatgggccgg gcattgttcg cattggcgat
     3361 tttgttgagc accggcgccg cgcaggcgca gctggatccc agcttcgcac aatgcgctgc
     3421 gtgccacacg gtcaagcccg gcgagaatcg cctcggcccg tcgctctaca aggtggtagg
     3481 ccggccgaag gcgtcggcgc cgggcttcgc ctattcgccc gcgatgaagg cgcagaaggg
     3541 cgcgtggagc gaacaggagc tcgacgcctt tatcacgaat ccgcgcgcca aggtgccggg
     3601 cacccggatg acctatgccg gcatgccgga cgcggcgaag cgcgcgcggc tgatcgcctg
     3661 gctcaaaacg atcaagtaag ttcgcccaga aactggacgt cgcgcgccag ccccaggaag
     3721 cgctggccgc cgtccaacac gatcgtctga ccggtgagcg tcggcgaggc gatgacgaag
     3781 cgcaaagcgg cgacgatctg ttcgacggtc acgccccgct caagcgcgtt cagccggtgc
     3841 accgcatcga aattggcgcg cgtctgcggc ccggaaacga gcgtcaccga aggggcgatc
     3901 ccgcacacgc gaatgccccg tggggcgagc agccgtgcgc tgagttccgt cacgcccgcg
     3961 aacgccattt tggacgcggt ataagtgaag aaatcgggat tgggctgagc aagcttggcg
     4021 tcgagcaggt tgacgacaag cgcgccctgt ccctccggca ctgcccgcgc aaaggcgcgc
     4081 gtcaggagcg ccggcgcgcg ggcattcacc gccatgtgcc ggtcccattg ctcgggcgta
     4141 aaatcctcga actggtccag ctcgaaaccg gcggcgctgt tgaccagcag cgccggcggg
     4201 gggaggccgg ccaaagccgc gacaatcgtc tccgcggcgg cggggtccgc gaggtccgcg
     4261 cgcacggcgg cggcgcccag ctcggcggcc agcgccgaag catcggaggt gtgatgatga
     4321 atcagcacct gccagccgtc cgctgcgagc gcgcgggaaa tcgccgcgcc gatccgccgc
     4381 gcaccgccgg tcacgatcgc ggtgcgcggg ctgccgaact cgggcgtcat gccatcgcgc
     4441 tcgggcgcgc ggcggcgcgc gcgtgccagg cggcgagggc cggcggcaat ttgccgtcgg
     4501 acaagcgtgt cgccttggcg aaatcgaccg ttatcagcgc ggtcaggtcg gcgaagctat
     4561 aatagtcggt cgcgatccat tcgcgccctt ccagatgccg gtcgagcatc tcgacgcacc
     4621 agccccacat attctggccg cgcattgcga gctccggaag ctgcggcacg ggcggccaga
     4681 agccggacag cgcgcgatcg gtcatgtgct tgctgcgatt gcgaaaagcg taaacgacgc
     4741 cggcatagcc ctccgcctcc acgcgccgcg tccaatattc gatccgggcg atctcgagcg
     4801 gctcacggcc gaacaggggt ggatcggggt gaagcgcttc gaaatagcgg cagatagcga
     4861 ccgaatcggc aatgcaggca ccgtcgtcca gctccagcac cggcacggtg ccgcgcgggt
     4921 tgagcgtcag gaacggctcg cgcagatttt cggcagcggc caggtcgacc atccgcc
//
LOCUS       DASQVK010000081         4144 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_258099,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000081 DASQVK010000000
VERSION     DASQVK010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4144
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258099"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(63..863)
                     /locus_tag="VE567_01770"
     CDS             complement(63..863)
                     /locus_tag="VE567_01770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008070459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase/chromate resistance protein"
                     /protein_id="HYZ47601.1"
                     /translation="MPAIGAIKADKLSRLIGTPGAPVLVDLRDAGDLIPGSVRRCAER
                     VEQWAGALAGRPVIAICADGGASAAVAAWLRHAGAGAEILEGGVRAWSAAGLPLVREA
                     VLPPRDEAGRTRWITRARPKVDRIACPWLIRRFVDPGAAILFAAPNDVVAAGERLDAA
                     PFDVEGVFWSHRGELCTFDTMVEELGLAGWPGLDRLSAIVRGADTARPEIAPQAAGLL
                     AASLGLSRMYADDHAQLEAGMTLYDAFYRWCRDATAETHNWPTNKVKA"
     gene            1089..2729
                     /locus_tag="VE567_01775"
     CDS             1089..2729
                     /locus_tag="VE567_01775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47602.1"
                     /translation="MTTRGQRQDGSTINATVSYNSNLDQVTYAFANPFSMQINLSRAT
                     FVTVNGSGLGDLFNLMNSSSVTINGGKGNDIFSVSAMTGSLVDNVVRGNLGVDFITLN
                     GSNSNIDLAMASGIEAVVGRRTLTGQTLSLKLDQLAASTLTDGGSGRAFAAVLGGDGN
                     VNLALSGKFQLLGTVDQAGNGFDANGNAITGSALAALQSRVTSISSVTGNLATLYANT
                     AVVPANETTVGSELSAYVFSDGIKAYTLWTDATITATDAKGVLLPSYYNPDAATPATP
                     PSYGFVDTFDKNGAFGVGTISVDPNDLPTLKMGTGTVEGVSAILLRAEVTGIKVAGDS
                     GANGINWFGIGTSGGGNEITGSKVGNIFDLQTSTALIDQLVGGKGFDVVKAGASGADV
                     DLTGLFGPNGKASSGIDAVVGSLNDTQTVELDVSKLRIATDATGAHVASFTALLGSSA
                     DTLTLSGAGKWAEIATFKPGEPLPDHAVALSNTGVLNDLFASSKHTAENSLDGHLFAQ
                     VNSRGDVVKYVTVYTDATIDNHLAVGTASLTTDYFHFA"
     gene            3306..3737
                     /gene="rplK"
                     /locus_tag="VE567_01780"
     CDS             3306..3737
                     /gene="rplK"
                     /locus_tag="VE567_01780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011240610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HYZ47603.1"
                     /translation="MAKKITGYIKLQVPAGAANPSPPIGPALGQRGVNIMEFCKAFNA
                     QTGDQEKGTPLPTVITVYADRSFSFETKTPPASFLLKKAANIKSGSKEPGKATAGKIK
                     RSQLAEIAQVKMKDLNANDIDAATKIIEGSARAMGLEVVEG"
     gene            3742..>4144
                     /locus_tag="VE567_01785"
     CDS             3742..>4144
                     /locus_tag="VE567_01785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HYZ47604.1"
                     /translation="MAKLTKKLKAQADRVDREKLYGVNEAIALARELATAKFDETIEV
                     ALNLGVDPRHADQMVRGVVTLPKGTGKTVRVAVFAKGAKADEAREAGADIVGAEDLLE
                     TIQGGTIDFDRCIATPDMMGVVGRLGKVLGPK"
BASE COUNT          783 a         1379 c         1296 g          686 t
ORIGIN      
        1 ggcttcgccg aagctgatgc cgtgaccggc atcagctcct gcttcgagat tacggctatc
       61 catcacgcct tcactttgtt ggtcggccag ttgtgagtct cggcggtggc gtcgcggcac
      121 cagcggtaga aggcgtcgta cagcgtcatc cccgcttcga gctgcgcgtg gtcgtcggca
      181 tacatgcgcg acaggccgag cgaggcggcc agcagccccg ccgcttgcgg tgcgatctcg
      241 ggtcgggcgg tgtcggctcc gcgcacgatc gccgacagcc ggtcgagccc gggccagccg
      301 gccagcccca gctcttcgac catcgtgtcg aacgtgcaga gctcgccgcg atggctccag
      361 aacacgcctt cgacatcgaa cggcgccgca tcgagccgct cgccggccgc gaccacgtca
      421 ttgggcgccg cgaacaggat cgccgcgccc gggtcgacga agcggcgaat cagccacggg
      481 caggcgatgc gatcgacctt cggccgcgcg cgcgtgatcc aacgcgtccg cccggcttcg
      541 tcgcgcggcg gcagcaccgc ctcccgcacc aaaggcaggc cggccgccga ccaggccctc
      601 acgccccctt ccagtatctc cgcgcccgcg cctgcgtggc gcaaccaggc ggcgacggcg
      661 gcgctcgccc ctccgtcggc gcaaatagcg atcaccgggc ggccggccag cgcgcccgcc
      721 cattgctcga cccgctcagc gcagcggcgc accgagcccg ggatcaagtc cccggcatcg
      781 cgcagatcga ccagcacggg cgcgcctggc gtcccgatca aacggctcaa tttgtcggct
      841 ttaattgcac caattgcagg catgacagcg tcctccacat ccaggacgcg atcgttcagc
      901 atgccgcctc atggggagat cgcctgtccc catgcccccg ttaaaggatg gtaggccgcg
      961 gctgtcaagc acatgcgccg caaaatgcac gctggccgcc caccgcaaca aagaagacat
     1021 ctaactgcaa cttcttctgg ctactggccc gttaaccgta ttcatttatc ggaacaaagg
     1081 gggacttcat gacgaccagg gggcagcggc aggacgggtc gacaatcaac gcgaccgtct
     1141 cgtacaactc taacctcgac caggttactt acgcgttcgc caacccgttc agcatgcaga
     1201 tcaacttgag ccgggccacg ttcgttaccg tgaacgggtc gggactcggc gatctgttca
     1261 acctgatgaa ttcgagctcg gtcaccatca acggcggcaa gggcaacgat attttttccg
     1321 tgtcggcgat gaccggcagc cttgtcgaca atgttgttcg cggcaatctg ggcgtcgatt
     1381 tcatcacgct gaacggctcg aacagcaata tcgacctggc gatggcaagc ggcatcgaag
     1441 ctgtggtggg ccggcgcacg ctgacgggcc agaccctcag cctgaagctc gaccagctgg
     1501 ctgcatccac gttgaccgac ggcggctcgg gccgggcatt cgcggcggtc ctcggcggcg
     1561 atggcaacgt taatcttgca ctttcaggca aattccagct gctcggcacc gtcgatcagg
     1621 ctgggaatgg cttcgacgcg aacggcaacg cgatcacggg cagcgcgctc gctgcactcc
     1681 agtcccgggt cacgagcatt tcgagcgtca ccggcaatct cgccacgctt tatgcgaata
     1741 ctgccgtcgt tcccgccaat gagaccactg tcggctcgga gctaagcgct tatgtgttca
     1801 gcgacggaat caaggcctat accctgtgga ccgacgcgac catcaccgcg accgacgcca
     1861 agggcgtgct tctcccgagc tactacaacc ccgatgctgc aactccggcc acgccgccca
     1921 gctacggctt cgtcgacacg ttcgacaaga acggagcctt tggcgtggga acgataagcg
     1981 tcgatccgaa cgatctgccg acgctgaaaa tgggaacggg cacggtggaa ggcgtctcgg
     2041 cgatcctgct gcgcgccgag gttaccggca tcaaggtggc cggcgactcg ggcgcgaacg
     2101 gcatcaattg gttcgggatc ggcacgagcg gtggcggcaa tgagatcacc ggctcgaagg
     2161 tcggcaacat cttcgatttg cagacgagca ccgcgctgat cgatcagctc gtgggcggca
     2221 agggcttcga cgtcgtcaaa gccggcgcaa gcggcgccga tgtcgacctg acgggccttt
     2281 tcgggccgaa cggcaaggct tcgagcggca tcgatgcagt ggtgggcagc ctcaacgaca
     2341 cccagacggt cgaactcgac gtcagcaagc tgaggatcgc aaccgatgcg acgggcgcac
     2401 atgttgccag cttcacggcg ctgctgggtt cgtcggcgga cacgctgacc ctgtcaggcg
     2461 cgggcaaatg ggccgagatc gccacgttca agcccggcga accgctcccc gatcacgcgg
     2521 tcgcgctttc gaataccggc gtgctgaacg atcttttcgc ttcgtccaag catacggctg
     2581 agaacagcct cgacggccat ttgttcgctc aggtcaacag caggggcgat gtggtcaaat
     2641 acgtcaccgt ttacacggat gcgacgatcg acaaccatct ggcggttggc accgccagcc
     2701 tcacaaccga ttatttccac ttcgcttgag cggacaggga gcggcgctgc cggcgccgct
     2761 cccgatttcg gatcaggtac gaggcttcgc gagagccggc ctcagtgccg cacgcggacc
     2821 atacggcaag tgcgaacctt gcgatggttg tgccaccgta ccttgcagac gcgcttgttg
     2881 cgccagccgc ggtgcgtgac atgcctggtc gtggttgtcg tggtccttgt ctcaacccga
     2941 tcgtgcgccg cctcacgcat gcgctgatcc tgcgccgcct caggcatgcg ctgatcctgc
     3001 gctgccacag cgacgctcgg catggacgtg agtgcaatcg ctgctgctgc agccaaggcc
     3061 aatagtttca ttcgatcctc cattcccccg gcttccgccg aacccttcaa ccgacgtctg
     3121 gttgcaccct ggtccgctcg aggagcaaag tgcggctttc cttttcgcag gcgttcggct
     3181 aagggcgccc ccttccgggc gacagccggg aaatctgcgg gaggagcgcc tcggcgctcc
     3241 gtctggaccg ctaaacttga accgggtggg cgccatgcgc gcgttgccca gctagagagt
     3301 gagacatggc aaagaaaatt accggctata tcaagctgca ggtgccggcc ggcgccgcca
     3361 atccctcccc cccgatcggc ccggcactgg gccagcgcgg cgtcaacatc atggagttct
     3421 gcaaggcgtt caacgcgcag acgggcgacc aggaaaaggg cacgccgctg ccgaccgtga
     3481 tcaccgtcta tgcggaccgc tcgttcagct tcgagaccaa gacaccgccc gcctccttcc
     3541 tcctgaagaa agccgccaat atcaagtcgg gctccaagga gccgggcaag gcgactgcgg
     3601 gcaagatcaa gcgctcgcaa ctggccgaga tcgcccaggt caagatgaag gacctgaacg
     3661 cgaacgacat cgatgctgca acgaagatca tcgaaggctc cgcccgcgcc atgggcctcg
     3721 aagtggtgga gggctaagac gatggcgaag ctgaccaaga aactgaaggc ccaggctgac
     3781 cgcgtggacc gcgagaagct ctacggcgtc aatgaagcga tcgcgctcgc cagggagctg
     3841 gccaccgcga aattcgacga gacgatcgaa gtcgcgctga acctgggcgt cgatccgcgc
     3901 catgccgacc agatggtccg cggcgtcgtg acgttgccga agggcaccgg caagaccgtc
     3961 cgcgtcgctg tcttcgccaa gggcgcgaag gccgatgagg cgcgcgaggc gggggccgat
     4021 atcgtcggcg ccgaggacct gctcgagacg atccagggcg gcacgatcga tttcgaccgc
     4081 tgcatcgcca cgcccgacat gatgggcgtc gtcggccgcc tgggtaaagt gctcggcccc
     4141 aagg
//
LOCUS       DASQVK010000082         4160 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_163453,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000082 DASQVK010000000
VERSION     DASQVK010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4160
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163453"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1470)
                     /locus_tag="VE567_01790"
     CDS             complement(<1..1470)
                     /locus_tag="VE567_01790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017181306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYZ47605.1"
                     /translation="MRIRLLGSSAALAFLFTSLAPAHAADAESGGPGLTDFHAETSKD
                     IIVTAPYEQNRLDVLSGVSVLKGADLTQALRPTIGETLSRTPGVSSTSFGPNASRPVL
                     RGLQGERVRVLTDGLGSIDVSNTSVDHAVVVNPLLAERIEVLRGPESLLYGSSAIGGV
                     VNVIDRRIPLSVPDEPIHVDAVGTYGSAANERSGAGSVDVPLAGKFVVHADGSYTKTD
                     DLKIGGFVLAPSKRQEALASSLLPPDPTNPDPIDFAANAALRGQLPNSASKTWTVGAG
                     AALITDGGNLGVSYSHYDSLYGIPIRYATLPGQGQEAPRLDLKQDRVDMRAEVSTGGG
                     FLQAIRGRAGYATYRHFELAPDGSVGTAFYNKGIEGRLEFVQSNRNGWQGASGVQYFS
                     RDFNVVGDEAFLPKNETQQIGIFTTQQFDVGRVLLEGGARYEHTSVDSKPTANQPRFF
                     DGRQSFSTFSGSLGASLKLGSDWRIGLNASRTERAPSAEE"
     gene            complement(1759..1950)
                     /locus_tag="VE567_01795"
     CDS             complement(1759..1950)
                     /locus_tag="VE567_01795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47606.1"
                     /translation="MSVLAAFVLAASGAARSLCGLEEIRDPQLAVCPPWVTYDEDGEE
                     IGQAASNSGNSQDEGMQYN"
     gene            2028..3578
                     /locus_tag="VE567_01800"
     CDS             2028..3578
                     /locus_tag="VE567_01800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007404292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase D family protein"
                     /protein_id="HYZ47607.1"
                     /translation="MTRRTALGRLALGAGVLAAPAILRAQQLFAAYPFRLGVAAGDPS
                     SDGFVIWTRLAPDPLERHGGMPMAPVPVDWQVAADERFATVVAKGSATARPELGHSVH
                     VEVAGLESDRPYWYRFSIGRERSVAGRARTLPAPGANIDRVRFAVAGCQNFEDGLFTA
                     YRHLAAEDVAFVFHYGDYIYEGRSSPVPVGYDGRPRPFVRAHEGQLLFDLDDYRRRYA
                     QYKMDPDLQAAHAAAAWFPTFDDHEVENNWTGEIDQENDPPEVFLLRRAAAFQAYYEH
                     MPFRAASFPKPGGMQIYRRARIGSLLDLHLLDTRQFRTDQPCDDGFKPHCPGWDDPKA
                     QVIGTVQEKWLNASLRERRARWNAIAQQVMMMPLDRRTGEEPAPIRNMDSWGSYNGPR
                     ERMLAMLKNTGNTVVLTGDEHQNFAGELRTDNGAGDAVAVEFVGTSISSGGDGADVRA
                     GAERIRSNNPFLKYSNDRRGYLTCDVTPGRWSTSFRTVDRVTTADAAIKTAATWSVEH
                     GQPSLHQE"
     gene            3818..>4160
                     /locus_tag="VE567_01805"
     CDS             3818..>4160
                     /locus_tag="VE567_01805"
                     /inference="COORDINATES: protein motif:HMM:NF015180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerC domain-containing protein"
                     /protein_id="HYZ47608.1"
                     /translation="MNRSRVDLVERAAVAASVACLFHCLALPLLLAALPALSRVFAIP
                     ESFHRWILAFAIPTSALAFWTGRASHGAYLPSVFGVAGLAGMASGVFLAGGTAAETVL
                     TVAGSISLAVAH"
BASE COUNT          761 a         1318 c         1307 g          774 t
ORIGIN      
        1 ttcttcggcc gaaggggccc gctccgtccg ggatgcgttc aggccgatgc gccagtccga
       61 acccagcttg agagacgcgc cgagcgatcc cgagaaggtg ctgaagcttt gccggccgtc
      121 aaagaatcgg ggctgatttg cagtaggctt gctgtcaacg gacgtatgct cgtagcgtgc
      181 gccgccctcg agcagcactc tgccaacatc aaattgctgg gttgtgaaga tgccgatctg
      241 ctgcgtttcg ttcttgggca gaaaagcttc gtcgcccacg acattgaagt cgcggctgaa
      301 atactgaacg ccgctcgcgc cctgccagcc attgcggttg ctctggacga attcgagtcg
      361 tccttcgatg cccttgttat aaaaggcggt gccgacgctc ccgtccggcg cgagttcgaa
      421 atgacgatag gtcgcatagc cggcgcgtcc gcggattgcc tgcaggaacc cgccacccgt
      481 gctcacctcg gcgcgcatat cgacgcggtc ctgcttcaga tccagacgcg gtgcttcctg
      541 cccctggcca ggcaaggtcg cgtaacggat tggaatgcca taaaggctgt cataatggct
      601 gtaggataca cccagattcc caccgtccgt gatcagggcc gcgccggcgc caacggtcca
      661 ggtcttgctc gcggagttcg gcagctggcc ccgaagcgcg gcgttcgcgg cgaagtcgat
      721 cgggtccgga ttggtcgggt ccggcggcaa caggctcgac gcgagtgctt cctgacgctt
      781 ggacggggcg agcacaaagc cgccgatctt cagatcgtcg gtcttggtat agctaccgtc
      841 tgcatggacc acgaacttgc cggcaagcgg gacgtcgacg gatcctgcac ccgaacgctc
      901 gttggcggct gagccgtagg ttcccacggc gtcgacatgg atcggctcgt cgggaacgga
      961 cagcggaatc cgccggtcaa tgacgttgac gaccccgccg atggcggacg acccgtagag
     1021 caaagactcc ggcccgcgca gaacttcgat gcgctcggcc agcaagggat tgacgaccac
     1081 cgcgtgatcg acgctggtat tggacacgtc gatcgaccca agcccgtccg tcagcacacg
     1141 cactcgctcg ccctgaaggc cgcgcaggac cgggcgagag gcattcgggc cgaaggaggt
     1201 ggaggaaaca cccggcgtcc ggctcagcgt ctcgccaatc gtaggccgca gcgcctgagt
     1261 gagatccgct cccttgagca ccgatacgcc ggagagcaca tcgagccggt tctgctcata
     1321 gggcgcagtg acgatgatat ccttggacgt ttcggcgtgg aaatcagtga gtcctgggcc
     1381 gcctgactcc gcgtcggcgg catgggccgg agccaaagat gtgaacaaga aagcgagcgc
     1441 tgcgctcgat ccaagaagtc tgatacgcat tgatgtccct cgtttttacc ctgcgctggc
     1501 gacgtcggaa gccatgagcc gaaggcctct acgccttctg atgaggcgat acaacatatc
     1561 aaaagaactt gatgaatgcg gcctgactta gtggacgatt gaccggccgc agcgcggcta
     1621 tgctcgggcg gtagttcacg acagccgggg tgatcggggc ggcatggcct cccctgaccg
     1681 gcgcgttcct gcctcctttc gcagctaccg gagacgctac cgaagcaatc gcctgcagcg
     1741 acttacgccg gcgatgcgtc agttgtactg catgccttcg tcctgcgaat ttccagagtt
     1801 cgatgcagcc tgaccgattt cctcaccatc ctcgtcatag gtcacccagg gtgggcagac
     1861 ggccaactga ggatcgcgaa tttcctccaa tccgcagagc gagcgagcgg cgcccgaagc
     1921 tgcaaggacg aatgctgcaa ggacagacat cgggcctctc ctttgaaaca atcgcatctt
     1981 aggcactccc cgaacgtgac caaccgtctg gagaatcgat catgataatg acgcggcgga
     2041 ccgcgcttgg ccggctggcg cttggagctg gcgtgctggc cgcgcctgcc attctacgcg
     2101 cacagcaatt gttcgcggca tatccgtttc gcttaggcgt ggccgcaggc gatccatcct
     2161 ctgacggctt cgtgatctgg acccggctgg cgcccgaccc gctggagcgc cacgggggca
     2221 tgccgatggc tccagtgccg gtggattggc aggtggccgc ggacgaacgc ttcgcaacgg
     2281 tggttgccaa gggcagcgcc actgctcggc ccgagctcgg gcacagcgtc catgtcgagg
     2341 ttgccggcct ggagagcgac cggccctatt ggtaccggtt cagcatcggc cgcgaacgct
     2401 cggtcgctgg gcgcgctcgc acccttcctg ctccgggcgc gaatatcgac cgcgtccgct
     2461 tcgccgtggc gggctgccag aatttcgaag atggcctgtt caccgcctat cgtcacctgg
     2521 ccgccgagga cgtcgctttc gtcttccact atggggacta catctacgaa ggccgaagct
     2581 cgccggtgcc ggtcggctat gacggcagac cgaggccctt cgtgcgcgcg catgaaggtc
     2641 agctgctgtt cgacctcgac gattaccggc gccgctacgc ccaatataaa atggatcctg
     2701 acctgcaggc cgcccatgcc gcggccgcat ggttcccgac gttcgacgat catgaggtcg
     2761 agaataattg gaccggcgag atcgatcagg aaaacgaccc gcccgaggtc tttctgctgc
     2821 gccgcgccgc tgcgttccag gcctattatg agcatatgcc gttccgcgcc gcttccttcc
     2881 cgaagcccgg aggaatgcag atctatcgcc gcgcccgcat tggcagtttg ctcgacctgc
     2941 acctgctcga cacgcgccag ttccgaacgg atcagccgtg cgatgacggc ttcaaacccc
     3001 attgtccggg ctgggatgat ccgaaggcgc aagtaatcgg cacggttcag gagaaatggc
     3061 tcaatgcctc gctgcgcgag cgccgcgccc gctggaacgc catcgcccaa caagtgatga
     3121 tgatgccgct cgaccgccgc accggcgaag agcctgcgcc gatccgcaac atggacagct
     3181 ggggcagcta taacgggccg cgcgagcgga tgttggcgat gctgaagaac accggcaaca
     3241 cagtcgtctt gacgggggac gagcaccaga atttcgccgg cgagctgcgg acggacaacg
     3301 gcgccggaga cgccgtcgcg gtcgagttcg tcgggacctc gatctcttcg ggcggcgacg
     3361 gcgccgatgt ccgcgccggg gccgagcgga tcagatcgaa caatcctttc ctgaaatact
     3421 ccaacgatcg tcgcggctat ctgacctgcg acgtcacgcc cgggcgttgg tccacctcgt
     3481 ttcggacggt tgaccgagtg accaccgccg acgcagcgat caagactgcc gcaacctgga
     3541 gcgtagagca tggccagccc tccctgcatc aggaatgaag ggagaaatga ccgaacttct
     3601 cggcaatacc gactactggg accggctggc tggggcgcgc gcatccgggt gagctagtcc
     3661 gcagccttgt tcaaggccac gacgcgcaac tcccgggatg tgcgtgaaac ctctgcgcga
     3721 acaggacagt tgtccgtcgc acaagatcgt aacgttgtat cattacctca ttcgggctat
     3781 atctttgtat gcagtcacgc tcgcaggaaa tcctaacgtg aaccgaagcc gtgtcgacct
     3841 ggtggagcgg gctgctgtcg ccgcgtctgt ggcgtgcctg ttccattgcc tcgcgctgcc
     3901 gttgctgctc gccgccttgc ccgccctgtc gcgcgttttc gcgattccgg aaagcttcca
     3961 tcgttggatt ctggccttcg ccattccgac cagcgccctc gctttttgga cggggcgtgc
     4021 cagtcacggg gcatatctgc cgtcggtttt cggcgtcgcg gggttggccg gcatggcatc
     4081 gggcgtgttt ctggcgggtg gaaccgccgc agaaacggtg ctcacagtcg ccggaagcat
     4141 tagcctagcc gtagcgcata
//
LOCUS       DASQVK010000083         2185 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_5492, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000083 DASQVK010000000
VERSION     DASQVK010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2185
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5492"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..275)
                     /locus_tag="VE567_01810"
     CDS             complement(<1..275)
                     /locus_tag="VE567_01810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006961729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HYZ47609.1"
                     /translation="MNGKQVFEFFRRLAEDNPSPETELEFVNPYTLLVAVVLSAQATD
                     VGVNKATRRLFAQVTTPEQMVALGEDALKEHIKTIGLFNTKAKNVIAL"
     gene            complement(272..1342)
                     /locus_tag="VE567_01815"
     CDS             complement(272..1342)
                     /locus_tag="VE567_01815"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HYZ47610.1"
                     /translation="MRAMASEYMFWAKNQAPVRYPLGSSEVPHFPLDRLGVSIADLEL
                     DGASRYRYPPLREAIARHCGVTPDCVVMADGTSMANMLAFSALLAPGDEVVAEHPVYE
                     PMIAAAAHVGATVRSFARRPPDFAIDPEEVARAVTPRTRLILITNLHNPTGNLADEAT
                     LRALDGIAARAGAHVLVDEVYLDAAVPAQRTAALLSDRFVVTSSLTKCYGLSGIRCGW
                     ILAEPALVERIWRLNELFGVAQAHAAERLACLVLNRLDEVAAGVPELLRRNRALANKF
                     FAGRDDIEWTAMTGGITGFPRLLSGDVDGLDRLLRDRYDTSIVPGRFFGAADRFRIGI
                     GSPTEIVEAGLERLGGALDSLR"
     gene            complement(1339..>2185)
                     /locus_tag="VE567_01820"
     CDS             complement(1339..>2185)
                     /locus_tag="VE567_01820"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HYZ47611.1"
                     /translation="KIGAIAMLVLCGLLLAPAATGVPRVDATAAAPLGIWAGLGAALT
                     PVMFSYGGWQTSGFVAGEMRDPRRDLVRALLLGVLGVVILYTLVGLTCVVVLGPEGLA
                     QSPTPASAVMRLALGETGGALIALGIAISALGFLSQGMLTAPRVYFAMAEDGLFFRGI
                     ATVGRRSRAPVAAILLQGAAACLIALSGTYGQILSYVVSVDFIFFGLTGAALFVFRRR
                     DPAAASFRAPGHPWTTLIFVLACAATVAGTIWNHPVNSAIGFLILLSGVPVCLFWLQR
                     RRRAS"
BASE COUNT          399 a          758 c          730 g          298 t
ORIGIN      
        1 agcgcgatca cgttcttcgc cttggtgttg aagagcccga tcgtcttgat gtgctccttg
       61 agggcgtcct cgccgagcgc caccatctgt tcgggcgtgg tcacttgcgc gaacaggcgg
      121 cgcgtggcct tgttgacgcc gacatcggtc gcctgagccg acagcacgac cgccacgagc
      181 agcgtataag ggttgacgaa ctccagctcg gtttcgggcg aaggattgtc ctctgcgagc
      241 cggcggaaga attcgaacac ttgcttcccg ttcatctgag cgagtccagc gccccgccca
      301 atcgctccag ccccgcctcg acgatttcgg ttggcgagcc gatgccgatc cgaaaacgat
      361 ccgccgcgcc aaagaagcgg ccggggacga tcgaggtgtc gtaccgatcg cgcaacagcc
      421 ggtcgaggcc gtcgacatcg ccggagagaa ggcgcggaaa gccagtgatg ccgcccgtca
      481 tcgccgtcca ttcaatatcg tcgcggccgg cgaaaaactt attggcgagc gcgcggttgc
      541 gccggagaag ctcgggcacg cccgccgcga cctcgtccag acggttcagc accaggcaag
      601 cgagccgctc ggcggcatgg gcctgggcga cgccgaacag ctcgttcagc cgccagatcc
      661 gctccaccag cgccggctcg gccaggatcc agccgcagcg tatgccgctc agcccatagc
      721 atttggtgag gctggaggtg acgacgaacc ggtcgctcag caacgccgcg gtgcgctgcg
      781 ccgggacggc cgcgtcgaga tagacttcat cgaccagcac atgggcgccg gcgcgcgctg
      841 cgatcccatc cagcgcgcgc aacgtggctt cgtcggcgag gttgccggtc ggattgtgaa
      901 ggttcgtaat caggatgagc cgcgtccgcg gcgtgaccgc ccgcgccact tcctcggggt
      961 cgatagcaaa atcgggcggc cggcgcgcga aggagcggac cgtggcgccg acgtgcgcgg
     1021 cggcggcgat catcggttca tagaccgggt gctccgcgac cacttcgtcc cccggggcga
     1081 gcagcgccga gaaggccagc atgttcgcca tcgaggttcc gtcggccatc accacgcaat
     1141 cgggcgtcac gccgcagtgc cgcgcgattg cctcacgcag gggcggatag cgatagcggc
     1201 tggcgccatc gagctcgaga tcggcgatgc tcacgcccag acggtcgagc gggaaatgcg
     1261 gcacttcgct cgatccgagc ggatagcgga cgggcgcctg gttcttcgcc caaaacatat
     1321 attcggaggc catggctctc atgacgccct ccgcctccgc tgcaaccaga acaggcagac
     1381 cggcacaccg ctcagcagga tcaggaagcc gatcgcgcta ttgacggggt gattccagat
     1441 cgtgccggcc acggtcgccg cacaggcgag cacgaagatc aaagtcgtcc atgggtggcc
     1501 cggcgcgcgg aagctcgccg ccgccggatc gcgcctgcgg aacacgaaca aggccgcgcc
     1561 cgtcagcccg aaaaagataa agtcgaccga cacgacatag ctcaggatct ggccgtaggt
     1621 gccgctgagc gcgatcaggc aggcagccgc gccttgcagc agaatcgcgg cgacgggcgc
     1681 gcggctgcgc cggccgaccg tcgcgatgcc gcggaagaac aacccgtctt ccgccatcgc
     1741 gaaatagacc cgcggcgccg tcagcatgcc ctggctcaga aagcccagcg ccgagatcgc
     1801 gatgccgagg gcgatcagtg cgccgccggt ctcccccagc gcgagccgca tgacggcgct
     1861 cgccggggtg ggcgactgcg ccagcccctc cgggcccagc acgacgacac aggtcagtcc
     1921 caccagcgtg taaagtatca cgacgcccag cacgcccagc agcagcgcgc ggaccaggtc
     1981 ccggcgcgga tcgcgcatct cgccggcgac gaagccggag gtctgccagc cgccatagga
     2041 gaacatgacc ggcgtcagcg ccgcgccgag tccggcccat atgccgagcg gcgcggccgc
     2101 cgtcgcatcc acgcgcggca cgcccgtggc cgccggcgca agcaggagac cgcaaagcac
     2161 gagcatggcg atcgcgccga tcttc
//
LOCUS       DASQVK010000084         2966 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_195319,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000084 DASQVK010000000
VERSION     DASQVK010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2966
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195319"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1136
                     /locus_tag="VE567_01825"
     CDS             <1..1136
                     /locus_tag="VE567_01825"
                     /inference="COORDINATES: protein motif:HMM:NF019128.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cell wall hydrolase"
                     /protein_id="HYZ47612.1"
                     /translation="DIIAAAVMALLVALGIWASQGRSAAFVSAPARAAQAEEQQLAPP
                     PKVPAPPVEPVRYAEIAPEDAVKINEAIPFSTAPNPAAKPLKLKIGDEDYARSVDCLA
                     AAAYYEAAAEGDDGMRAVAQVVINRLRHPAFPKTICGVVFQGAERDTGCQFTFSCDGS
                     LARMPSESGWRRAQAIATSALKGKVYKPVGYSTHYHTNWVVPYWSGSLDKVAQVGTHL
                     FFRWQGWWGTPGAFRGGHFGTEPVIAKIASLSPAHAGALDAQLAASDAPLSPEKLAEK
                     GAKQLKIVSPGGDAFIVVLDKRVAASQFPSLALAACGQKDFCKFMGWTDPAKAPKGFP
                     IGDTQHQALSFSYLRNRSNGFEKALWNCREFKRPDDSQCMKTG"
     gene            1176..1706
                     /locus_tag="VE567_01830"
     CDS             1176..1706
                     /locus_tag="VE567_01830"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HYZ47613.1"
                     /translation="MTPPAPLRIDRPIVLIGLMGVGKTTVGRRLAQRLGLPFVDADEE
                     IESAAGMSVSEIFERFGEPYFRDGERRVIARLVDGNPKVIATGGGAFMNDKTRALILE
                     RATAVWLDADIETLVSRVRRRETRPLLKGRDPREVLRDLAKLRNPVYALAPIHIRSQP
                     SPHDATVAAILKALSR"
     gene            1703..2782
                     /gene="aroB"
                     /locus_tag="VE567_01835"
     CDS             1703..2782
                     /gene="aroB"
                     /locus_tag="VE567_01835"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HYZ47614.1"
                     /translation="MTLIPVELGDRRYDVLIEAGALDRASELLGPYVRDRLIVVTDEA
                     VAAAQLPRLRHPRLETIVLPAGEATKSWAQLEALCDRLLDLEVERGEHIVALGGGVIG
                     DLTGFAAAIVKRGIGFVQIPTTLLAQVDSSVGGKTAINTGAGKNLIGAFHQPSFVLID
                     PTVLDTLPARELRAGYAEVVKYGLIADAGFFAWCETNGPALLSGDGEARAYAIAHSVR
                     AKAGIVADDERETADIRALLNLGHTFGHALEAETGFGPALLHGEAVAAGMGLAFRFSA
                     ERGLCPEADAVRVVEHLRTVGLPHDAVAAGVDAPGARLAAHMAHDKKRTDGRVPFILA
                     RGIGKAFVDKTVELNEVAAFLDRLQ"
     gene            complement(2792..>2966)
                     /locus_tag="VE567_01840"
     CDS             complement(2792..>2966)
                     /locus_tag="VE567_01840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HYZ47615.1"
                     /translation="RTAAPGVLWMLLGGATLFAATLYAMALGAPRWLGAVTPVGGVLM
                     IAGWLWVAWSLRQ"
BASE COUNT          474 a         1062 c          973 g          457 t
ORIGIN      
        1 acgacataat cgccgccgcg gtcatggcgc tgctcgtcgc gctcggcatc tgggcgagcc
       61 agggccgcag cgccgccttc gtgtccgctc cggcccgggc cgcccaggcc gaggagcagc
      121 agctcgcacc gccgccgaaa gtcccggctc cgccggtgga gccggtgcgc tatgccgaga
      181 tcgcgcccga agacgcggtc aagatcaacg aagccatccc cttttcgacc gcgcccaatc
      241 cggccgccaa gccgttgaag ctgaaaatcg gcgacgagga ttatgcccgc tcggtcgatt
      301 gcctcgccgc ggcggcgtat tacgaagcgg cagccgaggg cgatgacggc atgcgcgcag
      361 tcgcgcaggt cgtgatcaac cgcctccgcc accccgcttt cccgaagacg atctgcggcg
      421 tcgtctttca gggcgccgag cgtgacaccg gctgccaatt caccttcagc tgcgacggct
      481 cgcttgcgcg catgccctcg gaaagcggct ggcgccgcgc tcaggcgatc gccacgtcag
      541 cgctaaaggg caaggtgtac aagccggtcg gctattcgac ccattatcac accaactggg
      601 tcgtgcccta ttggagcggt tcgctcgaca aggtagcgca ggtcggcacg cacctgttct
      661 tccgctggca gggctggtgg ggcacgccgg gcgcgttccg gggcggccat ttcgggaccg
      721 agccggtgat tgccaagatc gcgagcctgt cgcccgccca tgccggcgcg ctcgacgccc
      781 agctcgccgc cagcgatgcg ccgctctcgc cggagaagct cgccgaaaaa ggcgcgaagc
      841 agctcaagat cgtctcgccc ggcggcgacg cgttcatcgt ggtgctcgac aagcgggtgg
      901 ccgccagcca attcccgtcg ctcgcgctcg ctgcctgcgg gcagaaggat ttctgcaaat
      961 tcatgggatg gaccgatccg gccaaagcgc cgaaaggctt ccctatcggc gatacccagc
     1021 accaggcatt gtcgttcagc tatttgcgca accggtcgaa cggctttgaa aaggcgctgt
     1081 ggaactgccg cgagttcaag cggcccgacg actcccagtg catgaaaacc ggctgaggct
     1141 tggcctatcc gccgcttgct cctagccggg gagcgatgac cccgcccgcc cctctccgga
     1201 tcgaccggcc gatcgtgctg atcgggctga tgggcgtagg caagacgact gtcggccgcc
     1261 gcctcgccca gcggctcggc ctgcccttcg tcgatgccga cgaagagatc gagtcggcgg
     1321 caggcatgag cgtctccgag attttcgagc ggttcggcga gccctatttc cgcgacggcg
     1381 agcggcgcgt gatcgcccgc ttggtcgacg gcaaccccaa ggtgatcgcc accggcggcg
     1441 gcgccttcat gaacgacaag acccgcgcgc tgatcctgga gcgcgcgacc gcggtgtggc
     1501 tcgacgcaga tatcgagacg ctggtgagcc gcgtccgccg ccgcgagacg cgaccgctgc
     1561 tcaaggggcg cgatccgcgc gaggtgctgc gcgacctcgc caagctccgc aacccggtct
     1621 atgcgctcgc cccgatccat atccgtagcc agccttcccc gcacgacgcg acggtggcgg
     1681 cgatcctgaa ggccctgtcg cgatgaccct gatccctgtc gaactcggcg accggcgcta
     1741 tgacgtgctg atcgaggccg gcgccctcga ccgtgcgagc gagctgctcg gaccctatgt
     1801 ccgcgaccgg ctgatcgtcg tcaccgacga agcagttgcg gcggcccagc tgccgcggct
     1861 gcggcatccg cgcctcgaga cgatcgtgct gcccgctggc gaagcgacca agagctgggc
     1921 gcagctcgag gcgctgtgcg accggttgct cgacctggag gtcgagcgcg gcgaacatat
     1981 cgtggcgctt ggcggcggcg tgatcggcga cctgaccggc ttcgccgcgg ccatcgtgaa
     2041 gcgcggcatc ggcttcgtgc aaatccccac caccttgctc gcccaggtcg acagctcggt
     2101 cggcggcaag acggcgatca acacgggcgc cggcaagaat ctgatcggcg cgttccacca
     2161 gccgagtttc gtgctgatcg acccgaccgt gctggacacc ctccccgcgc gcgagctccg
     2221 cgccggctat gccgaggtgg tcaaatacgg gcttatcgcc gatgccgggt ttttcgcgtg
     2281 gtgcgagacc aatggcccgg cgctgctctc aggcgatggc gaggcccgcg cctatgcgat
     2341 cgcgcacagc gttcgcgcca aggccggcat cgtcgccgat gacgagcgcg agacagccga
     2401 cattcgcgcc ttgctcaatc tcggccacac gttcggccat gcgctcgaag cggagaccgg
     2461 cttcggccct gccctgctgc acggcgaagc ggtcgcggcg ggcatgggcc ttgccttccg
     2521 cttctcggcc gagcgcgggc tttgccccga agccgacgcc gtccgcgtcg tcgagcatct
     2581 ccgcacggtc ggactcccgc acgacgccgt cgccgccggt gtcgatgcgc ccggcgctcg
     2641 cctcgccgcc catatggcgc acgacaagaa acgcaccgac ggccgcgtgc ctttcatcct
     2701 cgcgcgcggg atcggcaagg ctttcgtgga caagacagtg gagttgaacg aagtggcggc
     2761 gttcctggac aggctgcaat agcccgctcg cttattgtct gaggctccag gcaacccaca
     2821 gccacccggc gatcatcagc acgccgccga ccggcgtcac tgcccccagc cagcgcggcg
     2881 cgccgagcgc catcgcataa agagtcgcgg caaacagcgt cgccccccct agcagcatcc
     2941 acagcacgcc cggcgcggcg gtgcgc
//
LOCUS       DASQVK010000085         2403 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_163677,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000085 DASQVK010000000
VERSION     DASQVK010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163677"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(170..2149)
                     /gene="parE"
                     /locus_tag="VE567_01845"
     CDS             complement(170..2149)
                     /gene="parE"
                     /locus_tag="VE567_01845"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009340 - DNA topoisomerase IV complex
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HYZ47616.1"
                     /translation="MSDLFASNAALAQEYDASSIEVLEGLEPVRRRPGMYVGGTDERA
                     MHHLAAEVLDNAMDEAVAGFATRIEVTLDLGNRLTITDNGRGMPIDPHPKYPGKSALE
                     VILSMLHSGGKFSGKAYATSGGLHGVGVSVVNALSAETVVEVARNKSLYRQRFSRGVT
                     LGPLEELGAVPNRRGTTVSFVPDPEIFGDELKFKPARLYRLARSKAYLFAGVEIRWKC
                     APELIADADVPAEAVFQFPGGLADHLKEQVGDRECATSDFFTGSQEFPDEQGRVEWAV
                     GWPLWSEGSYSWYCNTIPTPDGGTHEQGLRAAITKGIRAFGELTGNKKAKDITADDIV
                     TGSELMLSVFIRDPQFQSQTKDRLTSPEAARLVENAVRDHFDHFLADRMERGRALLGF
                     VLDRMDDRLRRKAEREVKRKTATGARKLRLPGKLTDCAASDPAGTELFIVEGDSAGGS
                     AKQARDRKTQAILPIRGKILNVASATADKIRANSEIADLIQALGCGTREQCAPDALRY
                     ERVIIMTDADVDGAHIATLLMTFFFQEMPEIVRRGHLYLAQPPLYRLTSGGKSLYARD
                     DAHRAQLEATEFKGKKVEVGRFKGLGEMNPQQLRETTMDPKTRSMIRITLPDDAEDRY
                     LVRELVDRLMGRNPEHRFQFIQENASRLDEEAIDA"
BASE COUNT          397 a          759 c          796 g          451 t
ORIGIN      
        1 ctcttcggca tcgactccga gttgaagttc gaggcccgaa acctgacgca ccggcgttat
       61 acggagtcgc agcgggtcgg cagcaatgaa gtattctaca acaagtatga ccttggcacg
      121 actgtgacgc ttggctggag cgtgacgttc taaggccatt cctcgaggat cacgcgtcga
      181 tcgcctcttc atcgaggcgc gacgcgtttt cctggatgaa ctggaagcgg tgttcggggt
      241 tgcggcccat cagccggtcg accagttcgc gcaccagata gcgatcctcg gcatcgtccg
      301 gcagggtgat tcggatcatc gagcgcgtct tcgggtccat cgtggtttcg cggagctgct
      361 gcgggttcat ttcccccagg cccttgaacc gcccgacttc gacttttttg cctttgaact
      421 ccgtcgcctc gagctgcgcg cgatgcgcat cgtcgcgggc gtagaggctc ttgccgcccg
      481 acgtcaggcg ataaagcggc ggctgggcga gatacaggtg cccacgcctt acgatttccg
      541 gcatttcctg gaagaagaag gtcatcagca gcgtggcgat atgggcgccg tccacatcgg
      601 cgtcggtcat gatgatgacg cgctcgtagc gcagcgcatc gggcgcgcat tgttcgcgcg
      661 tgccgcagcc gagcgcctgg atgagatcgg caatctcgct attggcgcgg atcttgtcag
      721 cggtggcgga agcgacgttc aggatcttcc cgcggatcgg caggatcgcc tgggtcttgc
      781 ggtcgcgcgc ctgcttggcc gagccgccgg cgctgtcgcc ttcgacgatg aacagctcgg
      841 tgcccgccgg gtcgctcgcc gcgcagtcgg tgagcttgcc gggaagccgg agcttgcgcg
      901 cgccggtcgc ggtcttgcgc ttgacctcgc gctccgcctt tcggcggagg cgatcgtcca
      961 tccggtcgag cacgaagccg agcagcgcgc ggccgcgttc catccggtcg gcgaggaaat
     1021 ggtcgaaatg gtcgcgcacc gcgttttcga ccagccgcgc cgcttcgggg ctggtcagcc
     1081 ggtccttggt ctggctctgg aattgcgggt cgcggatgaa gacggacagc atcagctcgg
     1141 agcccgtgac gatgtcgtcg gcggtgatgt ccttggcctt cttgttgccc gtcagctcgc
     1201 caaaggcccg gatgcccttc gtgatcgcgg cgcgcagccc ctgttcgtga gtgccgccat
     1261 cgggcgtggg aatggtgttg caataccagc tgtagctgcc ttcgctccac agcggccagc
     1321 ccaccgccca ttcgacgcga ccctgttcgt cggggaattc ctgcgagccc gtgaagaagt
     1381 cgctggtcgc gcattcgcgg tcgcccacct gctccttcaa atgatcggcc aggccgccgg
     1441 ggaactggaa taccgcctcc gcggggacgt ccgcatccgc gatcagctcg ggcgcgcatt
     1501 tccagcggat ctcgacgcca gcgaagagat aggccttgga gcgagcgagc cggtagaggc
     1561 gggccggctt gaacttcagc tcgtcgccga aaatctccgg gtcgggcacg aacgagaccg
     1621 tggtgccgcg ccggttcggc accgcgccaa gctcctccag cggtccgagc gtcacgccgc
     1681 gcgagaagcg ctggcggtag agcgacttgt tgcgcgcgac ctcgacgacg gtttccgccg
     1741 agagcgcgtt gaccacgctg acgccgacgc cgtgcaggcc gcctgaggtc gcataggcct
     1801 tgccggagaa tttgccgccc gagtgcagca tcgagaggat cacttccagc gccgactttc
     1861 ccggatattt ggggtgcgga tcgatcggca tgccgcggcc attgtcggta atggtgagcc
     1921 ggttgccgag atcgagcgtc acttcgatgc gcgtggcgaa gccggccacc gcctcgtcca
     1981 tcgcattgtc gagcacttcg gcggcgaggt gatgcatcgc gcgctcgtcg gtgccgccta
     2041 catacatgcc gggccgccgc cgcaccggct cgagcccctc cagcacctcg atcgacgagg
     2101 cgtcatactc ctgtgcaagc gcggcgttgg aagcaaacag gtcggacatg gccaaagcta
     2161 tacgaggccg ggggctaagg gcgaaaccca ccaaagttca ctcgcatcgc gcttgttggg
     2221 gataaaaatt ctcaagcgca ggcgagacct gtccttttgt tcattgggta ggaacattag
     2281 cagaacatgg acatgcggga cagcgttggg ccgaaacaat ggaggggtgt ccacggaaag
     2341 gtttagtccc gcccgccgac acccctcgct ccggccgcgc cggctacctt ccgaaaggaa
     2401 gga
//
LOCUS       DASQVK010000086         2707 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_416109,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000086 DASQVK010000000
VERSION     DASQVK010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2707
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_416109"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..507)
                     /locus_tag="VE567_01850"
     CDS             complement(<1..507)
                     /locus_tag="VE567_01850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase (quinone)"
                     /protein_id="HYZ47617.1"
                     /translation="MPLYPLLRPLIHSLDAERAHRLTIAALKFAPPLGAPERDPALET
                     EVAGLRFPNPVGLAAGFDKDAEVPAQMLGLGFGFVEVGTLTPMPQAGNSRPRLFRLAE
                     DRAVINRMGFNNGGNAAAHARLARLSKRAGLVGVNIGANKDSADRIADYAAGARAMAD
                     VADYLTINV"
     gene            675..>2707
                     /locus_tag="VE567_01855"
     CDS             675..>2707
                     /locus_tag="VE567_01855"
                     /EC_number="1.1.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004470 - malic enzyme activity [Evidence
                     IEA];
                     GO_function: GO:0004471 - malate dehydrogenase
                     (decarboxylating) (NAD+) activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent malic enzyme"
                     /protein_id="HYZ47618.1"
                     /translation="MSEGSNVQFSEREALLFHSYGRPGKIEIVASKPMATQRDLSLAY
                     SPGVAVPVRAIAEDPGCAYDYTAKGNLVAVISNGTAILGLGNLGALASKPVMEGKAVL
                     FKRFADVDSIDLEVATEDPEAFINAVALLEPSFGGINLEDIAAPACFIIEQALKERMK
                     IPVMHDDQHGTAIITAAGLINACYLTGRELKDVKVVVNGAGAAAIACTSLIKAMGVRP
                     DNVIMCDRKGVIYQGRTESMDQWKSAHAAMTDRRTLTEALEGADVFLGLSAAGALKPE
                     MVKNMAPKPIIFAMANPDPEITPPEAKAARPDAIVATGRSDYPNQVNNVLGFPFIFRG
                     ALDVRATAINDEMKIAAAQALAELARQQVPEEVAAAYGGKAHSFGADYIIPAPFDPRL
                     MEIVPAAVAKAAMDTGVATRPILDLDAYRQMLKARLNPTTSVLTLAYEAARADPKRVL
                     FAEAEEEVVLRAAIQFRDGGYGTPVLVGRDDVYDQLRELGVDNPQSFEVHNSRNSPLV
                     PQMVDRLYERLQRRGYLRRECERMVNQDRNIFGALLLEMGEADAMITGVTRTYAQSIR
                     EVRRVLDPADGRVPFGIHVLVGQHHTVFMADTTVNERPSARELADIAEQTAAVARRMG
                     HEPRVAFLSYSTFGNPPGEFLDNIRDAVALLDQRGVSFEYEGEMAPDVALNPRV"
BASE COUNT          488 a          898 c          885 g          436 t
ORIGIN      
        1 cacattgatc gtcagataat cggcgacatc cgccatcgcc cgcgcgccgg cggcataatc
       61 ggcaatgcgg tccgctgaat ccttgttcgc gccgatattg accccaacca gccccgcgcg
      121 cttgctcagc cgcgccagcc gcgcgtgcgc ggcagcattg ccgccattgt tgaagcccat
      181 gcgattgatg actgcccggt cctcggcgag gcggaagagt cgcggccgcg aattgccggc
      241 ctggggcatg ggcgtcagag tccccacctc gacaaagccg aagcccaagc caagcatctg
      301 tgcaggcact tcggcgtcct tgtcgaatcc cgcagcgagc cccaccgggt ttggaaaacg
      361 caggcccgcc acctccgtct ccagcgccgg atcgcgctcg ggggcgccaa gcggcggggc
      421 gaatttcagc gcagcaatgg tcaaccgatg cgcccgttcg gcatcgagtg aatggattag
      481 cgggcggagc aggggataga gcggcacggt tcgcgcgata gcacgcatgg ctgcgatcgc
      541 cagacccgcg aacggagcca cggtggggcc gctctagata gacggctttg tgctggcggt
      601 atcgccttct ggctgccctt gccgtagcgg cgtcggcagg ccaagagcgg gtcggccatc
      661 agcgaggggt gaacatgagc gagggttcga acgtccagtt ttcagagcgc gaggcgctgc
      721 tgttccattc ctacggacgg cccggaaaga tcgaaatcgt cgcatccaag ccgatggcga
      781 cccagcgcga cctgagcctc gcctattcgc cgggtgtcgc ggtgcccgtc cgcgcaatcg
      841 ctgaggaccc gggctgcgcc tatgactata ccgccaaggg caatctggtc gcggtgatct
      901 cgaacggcac cgcgatcctg gggctcggca atctcggcgc gctcgcctcc aagccggtga
      961 tggaaggcaa ggcggtgctg ttcaagcgct tcgccgatgt cgattcgatc gatctggaag
     1021 tcgccaccga ggaccccgaa gctttcatca acgcggtggc gctgctggag cccagcttcg
     1081 gcggcatcaa tctcgaggac atcgcggcac cggcttgctt catcatcgaa caggcgctca
     1141 aggagcggat gaagatcccg gtgatgcacg acgatcagca cggcaccgcg atcatcaccg
     1201 ccgccggcct gatcaacgcc tgctatctca ctggccgcga gctcaaggac gtaaaggtcg
     1261 tcgtgaacgg cgcgggcgcg gccgccattg cctgcacgtc gctcatcaag gcgatgggcg
     1321 tgcggcccga caatgtgatc atgtgtgacc gcaagggcgt aatttatcag ggccgcaccg
     1381 aaagcatgga ccagtggaag tccgcgcacg ccgctatgac cgaccgccgc acgcttaccg
     1441 aagcgctgga aggcgccgat gtgttcctcg gcctatccgc ggccggcgcg ctgaagcccg
     1501 aaatggtcaa gaacatggcg cccaagccga tcatcttcgc gatggccaat ccggacccgg
     1561 aaatcacccc gcccgaagcc aaggccgcgc ggcccgacgc gatcgtcgcc actggccggt
     1621 cggactatcc gaaccaagtc aacaatgtgc tcggcttccc cttcatcttt cgcggtgcgc
     1681 tcgacgtgcg ggcgacggct atcaacgacg agatgaagat cgccgccgca caggcgctcg
     1741 cagaactggc ccgccagcag gtgccggagg aagtcgccgc ggcctatggc ggcaaggcgc
     1801 acagcttcgg cgcggactat atcattccgg caccgttcga cccccgtctg atggaaatcg
     1861 tgcccgccgc cgtcgccaag gcggcgatgg acaccggcgt cgcgacccgc ccgatcctgg
     1921 acctcgacgc ctatcgccag atgctcaagg cccggctcaa tccgaccacc tccgtgctga
     1981 cgctggccta tgaagcggcg cgcgcggacc cgaagcgcgt gctgttcgcc gaagcagaag
     2041 aggaagtggt gctgcgcgcc gcgatccagt tccgcgacgg cggctatggc acgccggtgc
     2101 tggtcggccg cgacgatgtt tatgaccagc ttagggagct gggcgtcgac aatcctcaat
     2161 ccttcgaggt gcataacagc cgcaactcgc cgctcgtccc gcagatggtc gaccggctgt
     2221 acgagcggct gcagcgccgc ggctatctgc gccgcgaatg cgagcggatg gtgaaccagg
     2281 accgcaacat cttcggcgcg ctgctgctcg agatgggcga ggccgatgcg atgatcaccg
     2341 gcgtcacgcg cacttacgcc cagtcgattc gggaggttcg ccgcgtgctc gatccggccg
     2401 atgggcgcgt gccgttcggc atccatgtgc tggtcggcca gcaccatacg gtgttcatgg
     2461 ccgacaccac ggtcaacgag cgcccgagcg cgcgcgagct tgccgacatt gccgagcaga
     2521 cggcggcggt ggcgcggcgc atggggcatg agccgcgggt cgcgttcctc agctattcga
     2581 cgttcggcaa tccgccgggc gagttcctcg ataatatccg agacgcggtc gcgctgctgg
     2641 accagcgcgg cgtcagcttc gaatatgagg gcgaaatggc tcccgacgtg gcactcaatc
     2701 cgcgggt
//
LOCUS       DASQVK010000087         2799 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_132084,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000087 DASQVK010000000
VERSION     DASQVK010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2799
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132084"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..631
                     /gene="sufC"
                     /locus_tag="VE567_01860"
     CDS             <1..631
                     /gene="sufC"
                     /locus_tag="VE567_01860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010218691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HYZ47619.1"
                     /translation="GKSTLAYVLGGRPGYEVTEGSVTFDGQDLLDMEPHERAAAGLFL
                     GFQYPVEIPGVSNVQFLRTALNAQRRARGEDELSAGDFLRLARAQADALGLDMEMLKR
                     PVNVGFSGGEKKRNEMVQMGIIGPRLAILDETDSGLDIDALKAVGEGINGIMRKPDKA
                     VLLITHYQRLLDYVRPDHVHVLAAGRIVRSGGPELAHELEREGYAQVAA"
     gene            753..1853
                     /locus_tag="VE567_01865"
     CDS             753..1853
                     /locus_tag="VE567_01865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SufD family Fe-S cluster assembly protein"
                     /protein_id="HYZ47620.1"
                     /translation="MTALSLPSPRQEAWRWANLSALPALAAQQPSGSWPNLGLALGKG
                     PRLVFVDGVLDESRSDTGPLAIGPVDARTDHPLGRLATGPGWALRLGRDHSPPGLIEI
                     VHVATGGANHLPGLIHLDEDAQASIVETFIGDGWSNRLTAIRLGRSARLMRSVRLAQA
                     SGFQSLRDEAEIGTGASLVTIVLAEGGAGSRADAFLRLTGEAAFAEMGGTLLARGEQR
                     HEAAVVLRHEAENGMSRQTWRAVADDTASASLAARVEVARGAQKTDAEQSLRGLLLKR
                     AATVNLKPELEIFADDVKCAHGATVGELDARALFYLESRGIPPAEARALLTRAFVADA
                     LERIGQDEVREAFAASADRWLQRSPCEVNGGK"
     gene            1853..>2799
                     /locus_tag="VE567_01870"
     CDS             1853..>2799
                     /locus_tag="VE567_01870"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010407507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HYZ47621.1"
                     /translation="MATLLAETRPLDLLADFPAIPAGWAYLDTAATAQKPRPVIEAIT
                     RGYDTTYATVHRGVYQRSADMTLAYEAARKRVARFIGAASADEIVFVRGATEGINLVA
                     ESWGGSQLKAGDRILLSQLEHHSNIVPWQLLRDRTGIEIEVAPLTTDGRIDLDAAEAM
                     LTERHKLVAFAHVSNVLGSLLDAQRAAAMAHKVGAKLLLDGCQAVPRLPVDVQTIGCD
                     FYVFSGHKLYGPTGIGVLWARDEILDAMPPWQGGGAMIDRVTFERTTYAPPPARFEAG
                     TPHIVGALGLHAAIDYVDAIGLDAIHAHETALVRATREAL"
BASE COUNT          456 a          976 c          941 g          426 t
ORIGIN      
        1 aggcaagtcg acactcgctt atgtgctcgg cgggcggccc ggctacgaag ttaccgaggg
       61 ctccgtgacc ttcgacggac aggacctgct cgacatggaa ccgcacgagc gggcggcggc
      121 ggggctgttc ctcggcttcc aatacccggt cgagattccg ggcgtgtcga acgtgcagtt
      181 cctgcgcacc gcgctcaacg cccagcgccg cgcgcggggc gaggacgagc tgtcggcagg
      241 cgacttcttg cggctcgccc gtgcccaggc cgatgcgctc gggctcgaca tggagatgct
      301 gaagcgaccg gtgaatgtcg gcttttcggg tggcgaaaag aagcgcaacg agatggtgca
      361 gatggggatc atcggccccc gcctggcgat tctcgacgag accgactccg gcctcgacat
      421 cgacgcgctg aaggcggtcg gcgaaggcat caacggcatc atgcgcaagc ccgacaaggc
      481 agtgctgctg atcacccact atcagcgcct gctcgactat gtccggcccg accatgtcca
      541 cgtcctcgcg gccggccgca tcgtccgctc gggcggcccc gaactcgcgc acgagctgga
      601 gcgcgaaggc tatgcacagg tggcagcgtg aaggcacggt cctttccctc ccccacccgc
      661 cagcctgaac gtgtttcggg ccaagcgtcg agcgccacgc acgtcatcca gcttgtcccg
      721 aaacaagttc gggatgacgg aaggccggcg gcgtgacggc gctttcactc ccttcacctc
      781 gccaggaggc gtggcgctgg gccaaccttt cagccttgcc cgcccttgcc gcgcagcagc
      841 cgagcggttc ttggcctaac cttggccttg ccttaggtaa gggcccgcgg ctggtgttcg
      901 tcgatggcgt gctggatgag agccggagcg atacggggcc gctggcgatc gggccggtgg
      961 atgcccgcac cgatcatccg cttgggcgct tggcgaccgg cccgggctgg gcgctgcggc
     1021 tcgggcggga tcattcgccg ccggggctga tcgagatcgt gcatgtcgcg accggcggcg
     1081 cgaaccacct gcccggcctg atccatctcg acgaagacgc gcaggcctcg atcgtcgaaa
     1141 ccttcatcgg cgatggctgg tcgaaccggc tgaccgcgat ccgcctgggc cgctcggcgc
     1201 ggctgatgcg ctcggtgcgg cttgcccagg cgagcgggtt ccagtcgctg cgcgacgaag
     1261 cggagatcgg cacgggcgcg agcctggtga cgatcgtgct ggccgaaggc ggtgcaggca
     1321 gccgggccga cgctttcctc cgcctgaccg gcgaagccgc gtttgcggaa atgggcggca
     1381 ccttgctcgc gcgcggcgag cagcggcacg aagcggcggt cgtgctgcgc cacgaagccg
     1441 agaacggcat gtcgcgccag acctggcgcg ccgtcgcgga cgacactgca tccgccagcc
     1501 tcgccgcccg cgtcgaagtg gcgcgcggag cgcagaagac cgacgccgaa cagtcgctgc
     1561 gcggcctgct gctcaagcgc gcggcgacgg tgaacctgaa gcccgaactc gaaatcttcg
     1621 ccgacgacgt gaaatgcgcg cacggtgcaa ccgttggcga actcgatgcg cgtgcactct
     1681 tctacctcga aagccgcggc atcccgccgg cggaagcccg cgcgctcctc actcgcgcct
     1741 tcgttgccga cgcactggag cgaatcgggc aggacgaagt gcgcgaggcg ttcgctgcca
     1801 gcgccgaccg gtggctccaa cggagtcctt gcgaagtgaa cgggggcaaa taatggccac
     1861 cttgcttgcc gagacccgcc cgctcgacct cctcgccgac ttccccgcga tcccggccgg
     1921 ctgggcctat ctcgacaccg ccgccaccgc gcaaaagccg cggccggtga ttgaagcgat
     1981 cacgcgcggc tacgacacca cctacgccac ggtacaccgc ggcgtgtatc agcgctcggc
     2041 ggacatgacg ctggcctatg aggcggcgcg caagcgagtc gcgcgcttca tcggcgcggc
     2101 gtctgccgac gaaatcgtgt tcgtgcgcgg cgcgaccgaa gggatcaatc tggtcgccga
     2161 gagctggggc ggctctcagc tcaaggccgg cgaccgcatc ctcctctccc agctcgaaca
     2221 ccacagcaac atcgtgccct ggcaattgct ccgcgaccgc accgggatcg aaatcgaagt
     2281 agcgccgctg accacagatg gtcgcatcga tctcgacgct gccgaggcaa tgctgaccga
     2341 gcggcacaag ctcgtcgcct tcgctcatgt ctcgaacgtg ctcggctcgc tgctcgacgc
     2401 gcagcgcgca gcggccatgg cgcacaaggt cggcgcgaaa ctgctgctcg acggctgcca
     2461 ggccgtgccg cgcctcccgg tcgacgtgca gacgatcggc tgcgacttct acgtcttttc
     2521 cggccacaag ctttacggcc ctaccggcat cggcgttctc tgggccaggg acgaaatcct
     2581 cgacgccatg ccgccctggc aaggcggcgg cgcaatgatc gaccgggtca ccttcgaacg
     2641 caccacctat gcaccgccgc ccgcgcggtt cgaggcaggg acgccgcaca tcgtcggcgc
     2701 gctcgggctg catgcggcga tcgactatgt ggacgcgatc gggctcgacg cgatccatgc
     2761 acacgagacg gctttggtcc gcgccacgcg cgaggcgct
//
LOCUS       DASQVK010000088         3499 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_322095,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000088 DASQVK010000000
VERSION     DASQVK010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3499)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3499)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3499
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322095"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(133..1098)
                     /gene="trxB"
                     /locus_tag="VE567_01875"
     CDS             complement(133..1098)
                     /gene="trxB"
                     /locus_tag="VE567_01875"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HYZ47622.1"
                     /translation="MTIHKTRMLILGSGPAGLSAAIYGARAGMKPIVVQGIQPGGQLM
                     TTTDVENYPGFADVIQGPWLMEQMQKQAEHVGAVMMYDIVTEVDLSHRPFRMKGDGGD
                     IYEGDTLVIATGAQAKWLGLDSERHLAGKGVSACATCDGFFYRGKKVVVIGGGNTAVE
                     EALYMTNHSPDVTLIHRRDSLRAEKILQERLFANERISVLWNKTVERFVSGGDPEGLV
                     GLDLKDTRTGEQSHIACDGAFVAIGHSPATELFQGQLQLDEGYILVEPGTSRTAIPGV
                     FACGDVMDKHYRQAVTAAGTGCMAALDAERFLAEAEFEAKRAEAA"
     gene            1433..3076
                     /locus_tag="VE567_01880"
     CDS             1433..3076
                     /locus_tag="VE567_01880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family metallopeptidase"
                     /protein_id="HYZ47623.1"
                     /translation="MKTALLSLALLSTAALAQAPQFSVDRLTQDVRTLSSDAFEGRGP
                     ATPGEDKSIAYISQAMQAAGLQPAGDMENGQRGWYQKVPLLRASLRGADPKLVLTVAG
                     QPMPLTQGQQIAVRAPLTGQKHVTINNAPLVFAGYGVTAPERKWDDFKGVDVKGKILV
                     VLINDPDFETGQGDFGGKAMTYYGRWTYKYEEAARRGAAGVLIVHETGPASYGWNTVK
                     NSNTNTMFDIVRTNPKAVHTPMEAWIQRDQAEAIFKASGLDFAAEKERAQSRAFKPVP
                     LKASFSADYDVDSEVITSHNVVGILPGAKHPDELVAYSAHWDHLGVGQPDARGDRIYN
                     GAVDNATGIAQLLELARAFSHGPRPERSVLFLAVTAEEKGLLGSEYYAANPLYPLAKT
                     VGVINMDGGSIAGPTRNFSISGNAKLDLLSDLTKVAAAQGRSYTPDPHPEAGHFYRSD
                     HFSFAKRGVPAISFEGGNDLVNGGTKRGEELAQAYVKDRYHQPADEWSSDWDLSGMTN
                     DLGLLYTLGSNLANSREWPNWSPESEFRATRDQSAALRK"
     gene            3129..>3499
                     /locus_tag="VE567_01885"
     CDS             3129..>3499
                     /locus_tag="VE567_01885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase"
                     /protein_id="HYZ47624.1"
                     /translation="MSAREDSVVNPGLIRSYDLRGTVGTDLTQRDARALGLSYAAALR
                     GERRVAVGYDGRLSSPALEAALVDGLVAGGAQVERIGRGPTGMLYHAVHTRDLDGGIM
                     ITGSHNPSDQNGFKLLLGKEPV"
BASE COUNT          626 a         1174 c         1104 g          595 t
ORIGIN      
        1 tggacagcga catgctctcc actttcggcg cgctcgtcac cttcctcgac cgcaaggtgc
       61 aacagggcta aagctgggcc gccccgaccc agcacccgtt catttcaagc aaagtcgaga
      121 aacgttcggc cgttacgccg cttcggcccg ctttgcctcg aactccgcct cggccaggaa
      181 ccgctcggca tccagcgcgg ccatgcagcc ggtgcccgcg gcggtgactg cctggcggta
      241 atgcttgtcc atcacgtcgc cgcacgcgaa gacgccggga atagccgtcc ggctcgttcc
      301 cggctcgacc aggatatagc cctcgtcgag ctgcaattgg ccctggaaca gttcggtcgc
      361 cggcgaatgg ccaatggcga cgaacgcgcc gtcgcaggcg atatggctct gctcgccggt
      421 gcgcgtgtcc ttgaggtcga ggccgaccag cccttccgga tcgccgccgg acacgaaccg
      481 ctccaccgtc ttgttccaca gcaccgaaat gcgttcgttg gcgaacagcc gctcctgcag
      541 gatcttttcg gcacgcagcg aatcgcggcg gtggatcagc gtcacgtccg gcgaatgatt
      601 ggtcatgtag agcgcttcct cgacggcggt gttgccgccg ccgatcacca cgaccttctt
      661 gccgcgatag aagaagccgt cgcacgtcgc gcacgccgag acgcccttgc cggcgaggtg
      721 ccgctcgctg tcgagcccca gccatttcgc ctgcgcgccc gtcgcgatca ccagcgtgtc
      781 gccttcatag atatcgccgc cgtcgccctt catccggaac ggccggtgcg acaggtccac
      841 ttcggtcacg atgtcgtaca tcatcacggc gccgacatgt tcggcctgct tctgcatctg
      901 ctccatcagc cacgggccct ggatgacatc ggcgaagccg ggataattct cgacatcggt
      961 ggtggtcatc agctggccgc cgggctggat gccctgcacc acgatcggct tcattcccgc
     1021 acgggcgccg taaatggcgg cgctcaagcc cgcggggccc gagccgagta tgagcatgcg
     1081 cgtcttgtgg atggtcatga gagtcccgaa tacctgttgc gcctcagcag atagggcgca
     1141 ccgtgtcgcg gcgcaaacgc atctcgggcc cgccttgata ctccgaaatg catgcgcccc
     1201 gctgccgggg ggggcgggca gcggggcgcg acgcggtaac agggagctta cgaagggggg
     1261 ggaagcaagc tcctgtgtct cataacgaaa caggcggggg cgggttccgc gccggatcca
     1321 aaacggctgc gtaacatctt ggattcacgc gctatcatgg gtgggcagag gaggcgttga
     1381 acttgtcgga gcagcgcggc atgaaagccg caactccagt tcgaggtcgt tgatgaaaac
     1441 cgccctgctt tccctcgcct tgctttccac cgccgccctg gcccaggcgc cccaattcag
     1501 cgtcgatcgt ctgacccagg atgtccggac cctctcctcc gatgcgtttg aaggccgcgg
     1561 cccggccacg cccggagagg ataagtcgat cgcctatatc tcgcaggcaa tgcaggccgc
     1621 cggtctgcag ccggccggtg atatggagaa tggacagcgc ggctggtatc agaaggtgcc
     1681 gctgcttcgc gcctcccttc ggggtgccga tcccaagctg gtgctgaccg tcgccggcca
     1741 gccaatgccg ctcacgcaag gccagcagat cgccgtccgt gctccgctca ctgggcagaa
     1801 gcacgtcacc ataaacaacg cgccgctggt tttcgcgggc tatggcgtca ctgcgcccga
     1861 gcggaaatgg gatgacttca agggcgtcga cgtcaagggc aagatcttgg tcgtgctgat
     1921 caacgacccg gattttgaga ccggccaggg cgatttcggc ggcaaggcaa tgacctatta
     1981 tggccgctgg acctataaat atgaggaagc cgccaggcgc ggtgccgccg gcgtgctgat
     2041 cgtccacgaa accggtccag cctcctatgg ctggaacacg gtcaagaact ccaacaccaa
     2101 caccatgttc gatatcgtgc ggacgaaccc gaaggcggtc cacacgccga tggaggcctg
     2161 gattcagcgc gaccaggccg aggccatctt caaggcctcg ggccttgatt tcgcggccga
     2221 aaaggagcgg gcccagagcc gcgctttcaa gcccgtgccg ctgaaggcga gtttctcggc
     2281 cgattacgac gtcgattccg aggtgatcac ctcgcacaac gttgtgggca ttctccccgg
     2341 cgccaagcat ccggatgagc tggtcgccta tagcgcgcac tgggatcatc ttggtgtcgg
     2401 ccagccggac gcgcgcggtg atcgcatcta taacggcgcg gtcgacaatg cgaccggcat
     2461 cgcccagctc ctcgaactcg cccgcgcctt ctcgcatggc ccgcggccgg agcgctcggt
     2521 cctgtttctc gccgtcacgg ccgaggaaaa gggtctgctc ggctccgaat attacgcggc
     2581 caacccgctc tatccgctcg caaagacggt gggcgtgatc aacatggacg gcggctcgat
     2641 cgccggcccg acgcggaatt tcagcatttc cggcaacgcc aagctggacc tgctcagcga
     2701 cctgacgaaa gtcgccgccg cccaggggcg cagctacacg cccgacccgc atcccgaagc
     2761 cgggcatttc taccgctcgg accatttctc tttcgccaag cgcggcgtgc cggcgatctc
     2821 gttcgaaggc ggcaacgatc tggtcaatgg cggcaccaag cgtggcgagg aactcgccca
     2881 ggcctatgtg aaggaccgct atcaccagcc ggccgacgaa tggagttccg actgggatct
     2941 gagcggcatg accaacgatc tgggcctgct ctacaccttg ggcagcaacc tcgcgaacag
     3001 ccgcgaatgg cccaattgga gccccgaaag cgaattccgc gccacgcggg accagagcgc
     3061 ggcgctccgc aaatagggcg gctcaggccc taacgaaacg aaccgcacca gcccgcgttt
     3121 gcgggagcgt gagcgcgcgc gaagactcgg tggtcaatcc agggctgatc cgcagctatg
     3181 acctgcgggg caccgtcggc acggacttga cccagaggga tgcgcgcgcg ctcgggcttt
     3241 cctatgccgc cgcccttcga ggcgagcggc gggtcgcggt cggctatgac ggccgcttgt
     3301 cctcgcccgc gctggaagcg gcgctggtcg acggcctcgt cgccggcggc gcgcaggtag
     3361 agcgaatcgg gcgggggccg accggcatgc tctaccatgc cgtccacacg cgcgatctcg
     3421 acggcgggat catgatcacc ggctcgcaca atccgtccga ccagaacggc ttcaagctgt
     3481 tgctcggcaa ggagcctgt
//
LOCUS       DASQVK010000089         3035 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_290559,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000089 DASQVK010000000
VERSION     DASQVK010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3035
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290559"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..271)
                     /locus_tag="VE567_01890"
     CDS             complement(<1..271)
                     /locus_tag="VE567_01890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47625.1"
                     /translation="MLKPEDDELIARAIREAEARTDGEVSVVVAPESDTYADVVLHWS
                     LLFALLPLALFATFPGLLLWASARVHEPWSAEAPPLHLMLTILLLK"
     gene            complement(271..1167)
                     /locus_tag="VE567_01895"
     CDS             complement(271..1167)
                     /locus_tag="VE567_01895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HYZ47626.1"
                     /translation="MPKALARWWTAFTLALLACLSTAAQAQTFPKFTGLVVDDANVIP
                     PAREAALAQKLEAFQQRTGRQLVVATIADTQGYPLEDYGYRLGRAWGVGLKDVNNGVI
                     LFIAPNNPAGQRGPRIEVGYGLEPVLTDALASVIVREKMMPLLKANGDIPGALEAGAD
                     AIIQQLSLPDEEAKAAQAKAIAEFDRTHANRQQSPGGGFPLGLIFWILVAAFVFLSMR
                     RGRKRGPWGAARRYDHGSNWPVWLWMASEIAENAGRNRGGWGSSGGGSWGGGGNDGSW
                     GGGGFTGGGGGSFGGGGASGDW"
     gene            complement(1171..1767)
                     /locus_tag="VE567_01900"
     CDS             complement(1171..1767)
                     /locus_tag="VE567_01900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010218514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HYZ47627.1"
                     /translation="MNSRLLAALSAPALALSVSACGINSVPTSEEVAKAKWADVQAAY
                     QRRANLIPNLVATVKGAATSEERILTNVTQARASATRITVTPEQLSDPAAMQHFAQAQ
                     SNLSAALLPITRLQEAYPQLQSQENFKTLMSQLEGTENRINIAIRDYNEAVREYNTRI
                     RTFPDMVGAKLVYGAKPLVPFQATTPNADVAPTVDFGK"
     gene            1889..2314
                     /gene="mscL"
                     /locus_tag="VE567_01905"
     CDS             1889..2314
                     /gene="mscL"
                     /locus_tag="VE567_01905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003047324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HYZ47628.1"
                     /translation="MFKGFREFIARGNVLDLAVAVIIGAAFATITTSLTEDIIMPLVS
                     TATGGLDFSNKFVLLGPVPDGYTGSPTDYAALKKAGAVMLGWGQFVTVVINFLILAFI
                     IYLLVRAATRVQLRKEAEPAATPEEVVLLREIRDSLKAR"
     gene            2296..2638
                     /gene="ssrA"
                     /locus_tag="VE567_01910"
     tmRNA           2296..2638
                     /gene="ssrA"
                     /locus_tag="VE567_01910"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01849"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="alphaproteobacterial-type; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF01849"
     gene            2767..>3035
                     /locus_tag="VE567_01915"
     CDS             2767..>3035
                     /locus_tag="VE567_01915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47629.1"
                     /translation="MGTALALALLGACGSGKDKIADKVEDNADKRAAAMEEASESMTN
                     ALQRNAVEQEATLVRSAGKERAEAIRESDLQADALSNAQKNALVKG"
BASE COUNT          555 a          968 c          987 g          525 t
ORIGIN      
        1 ccttcagcag caggatcgtg agcattaggt gcagcggcgg cgcctccgcc gaccagggct
       61 catggacccg ggcggaggcc caaagcagca gtccgggaaa ggttgcgaac agcgcgagcg
      121 gcaacagcgc gaacagcaac gaccagtgca ggacgacgtc cgcataagtg tcggactcgg
      181 gcgccaccac gaccgagact tcgccgtcgg tgcgtgcctc ggcctcgcgg atcgcgcggg
      241 cgatgagttc atcgtcttcg ggcttcagca tcaccaatcc cctgacgccc cgccgccgcc
      301 aaacgagccg ccaccgccgc ccgtgaagcc gccgccgccc cagctcccgt cattcccacc
      361 gcctccccaa ctgccgccgc cagagctacc ccagccgccg cgattgcgtc cggcattctc
      421 ggcgatctcg ctcgccatcc atagccagac cggccagttg ctgccgtggt catagcgtcg
      481 tgccgctccc caaggcccac gtttgcggcc acggcgcatc gacaagaaga cgaaggccgc
      541 aacgaggatc cagaaaatca gtcccagcgg aaagccgccg ccggggcttt gctgccggtt
      601 tgcgtgcgtg cggtcgaact ccgcgatcgc cttggcctga gcggccttgg cctcttcgtc
      661 gggcagcgag agctgctgga tgattgcgtc ggcgccggct tcgagcgcgc ctggtatgtc
      721 gccattggct ttcagcaacg gcatcatctt ctcgcgaacg atgacgcttg ccagcgcatc
      781 ggtcagtacc ggctccagcc catagccgac ctcgatgcgt ggaccgcgct ggccggccgg
      841 gttgttcggc gcgatgaaca ggatcacgcc gttgttaaca tccttcagcc cgacgcccca
      901 ggcccggcca aggcggtagc catagtcctc cagcggatag ccctgcgtgt cggcaatcgt
      961 agcgacaacg agctgccgcc cggttcgctg ctgaaaagcc tccagcttct gtgcgagcgc
     1021 cgcttcgcga gcgggcggga tcacgttcgc gtcgtcaacg accagacctg tgaatttggg
     1081 aaaagtctgc gcctgtgcgg cggtggacag gcacgcgagc agcgccagcg tgaacgccgt
     1141 ccaccaccgc gcaagagcct tgggcatcgc ttacttgccg aagtcgaccg tcggcgcgac
     1201 gtcggcgttg ggagtggttg cctggaacgg aaccaagggc ttggcgccat aaaccagctt
     1261 ggcgcctacc atgtctggga atgtgcggat gcgggtgtta tattcgcgca ctgcctcgtt
     1321 atagtcccgg attgctatgt tgatgcggtt ctcggtgcct tcgagctggc tcatcagcgt
     1381 cttgaaattc tcctggctct gcagctgggg ataggcctcc tgcagccgcg tgatcggcag
     1441 caaggcggcc gacaggttgg actgggcctg ggcaaagtgc tgcatcgccg ccgggtcgct
     1501 cagctgctcc ggggtcacgg tgatgcgggt ggcgctcgcg cgcgcctggg tcacgttggt
     1561 gaggatgcgc tcttcggacg tggctgcgcc tttgacagtc gcgacgaggt tcgggatcag
     1621 attggcgcgg cgctgatagg cggcctgcac gtccgcccat ttcgccttgg ccacttcctc
     1681 ggaagtgggg acggagttga tgccgcaggc tgagacggag agcgccaggg caggggcgga
     1741 aagcgcagcg agcaggcggg aattcatgca tgacctccag gtgtattgcg cggggaatac
     1801 agcatggccg cactgcccgc aatcggcctt gctttcacgg ccgtaacgag agagcctgcc
     1861 ggcgcgttcc gatccgaagg agagcggcat gttcaaagga ttccgggaat tcatcgccag
     1921 gggcaacgtg cttgacctgg cagtcgcggt gatcatcggc gctgcgttcg ccacgatcac
     1981 gacctctttg accgaagaca tcatcatgcc gctggtcagc acggcgacag gcggcctcga
     2041 tttctcgaac aaattcgtgc tgcttggtcc ggtgcctgac ggctatacag gatcgccgac
     2101 cgattatgcg gcgctcaaga aagcgggtgc ggtgatgctc ggctggggcc aattcgtcac
     2161 ggtcgtcatc aacttcctga tcctggcttt catcatctat ctgttggtac gcgccgcgac
     2221 gcgcgtccag ctgcgcaagg aggcggagcc cgccgcgacg cccgaggaag tcgtgctgct
     2281 gcgcgaaatt cgggactcgt tgaaggcgcg ctgatcatcg cctatatgcg tcagtgccgg
     2341 tttcggccgg ctatggcgat aaaatgtggt gtgcaataga cgcagcggac ccgggggcag
     2401 tacccggcgg ctccaccaga agcccgcagc agcgagttcc tgatggggcc gaaccaggat
     2461 cgacgtgtgt tgaaaagcgc tgctttcgcc cggaatggga ccaccgcaac ggcccataca
     2521 caagtgccaa cgacaacgag gcgctcgctc ttgctgccta actgacgccc tcacgggtaa
     2581 tagttaggta ggccaaaagc gcggtccggg ccgcaccggg caacagaagc ggattccagc
     2641 ggccgccgga ggggccgggc aacagaaccc tccggacctt tcttccccca ttttccgatg
     2701 gaacccgcgc gccgcctgcg cgctgtcgca cgcacattgc gagcggaggc cgatatgcga
     2761 atggctatgg gcaccgcgct ggcgctcgcg ctgcttggcg cgtgcggcag cggcaaggac
     2821 aagattgccg acaaagtcga agacaatgca gataagcgcg ccgcggcgat ggaagaagcc
     2881 tcggaatcca tgaccaatgc cctgcagcgc aatgccgttg agcaggaagc aactctggtc
     2941 cggtctgccg gaaaagaacg cgccgaagca atccgcgagt ccgacctcca ggccgacgcg
     3001 cttagcaacg ctcagaagaa cgcattggtt aaggg
//
LOCUS       DASQVK010000090         4373 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_100921,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000090 DASQVK010000000
VERSION     DASQVK010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4373)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4373)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4373
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100921"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(152..904)
                     /locus_tag="VE567_01920"
     CDS             complement(152..904)
                     /locus_tag="VE567_01920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HYZ47630.1"
                     /translation="MKPQTHYFTAADGVRLAWHELGEGRPVVLIHGYISSADMNWIRF
                     GHAEKVAGEGFRVIMPDLRAHGASDAPHDPSFYPPDVLTDDNLALIERLGLTDYDLGG
                     YSLGARTVARMLARGAAPNRAILSGMGLDGLVHTSRRVDHFRHVLTHLGSFRPGTPEG
                     NVQGFIKATKSEPVALLNILNTFTDTPEDVIRAIETPVLVLCGEEDNDNGSASALAEA
                     LPNGRLELVPGGHMSAVVKPELGKALARFLAA"
     gene            complement(924..1370)
                     /locus_tag="VE567_01925"
     CDS             complement(924..1370)
                     /locus_tag="VE567_01925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008830019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HYZ47631.1"
                     /translation="METVTGGCQCGRVRYEVGIENDEAYLCHCRMCQRATGGVAAAFK
                     NVKRANVRWQNGEPDWYQSSPIARRPYCAKCGTPLGFAFLEGSGNMDLTVGSFDDPGR
                     FRPTSHFGAESLHDAWLDTSGLKRMRSDEYQPLVDKWKAAGLELPS"
     gene            1457..1906
                     /locus_tag="VE567_01930"
     CDS             1457..1906
                     /locus_tag="VE567_01930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010404436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HYZ47632.1"
                     /translation="MSDTLGFLFADITRLMRRAFDERASTIGVTRNQWRMLTMLARHE
                     GANQGRLAELLDVEPITLCRMVDRLAEAGLVERRPDPSDRRAWRIFLTDGARPILAEL
                     RSLAEILIEETLDGLTGPDRDLLMSLLERIRTNLINCERKEKVAAHG"
     gene            1899..2966
                     /locus_tag="VE567_01935"
     CDS             1899..2966
                     /locus_tag="VE567_01935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010240079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HYZ47633.1"
                     /translation="MADADRPIIAERELDAPPAVKPKRRWGRLVALLIVPLLIVAVGS
                     YVWLTSGRSVSTDNAYVQQDKVSVSADVGGRIVEVAVRENQHVNKGDLLFRIDPEPYR
                     IAVDQARAALANAQVNVQTLKTEYQGKGADIEGARVAIQQAQEEFGRQAALMQRGFTT
                     RASYLNAQHAVEQARVQLANAEAGAAQARVKLETGAAVPGVNPQIAAARAQLDQALLN
                     LKRTEVRAPASGTVSQAERLQVGNQIIQAMPALSIVVNGRTWVEANFKETQLNQIRIG
                     QPAEIEIDAYSGLKLKGHVWSFGAGTGSEFSVLPAQNANGNWVKVTQRVPVRIAIDEA
                     SPRPLIAGLSAHVKVDVRNHG"
     gene            2947..>4373
                     /locus_tag="VE567_01940"
     CDS             2947..>4373
                     /locus_tag="VE567_01940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010404432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HYZ47634.1"
                     /translation="MSATTADVPATPVENKGLLTVAVMAATVMQILDTTIANVALPHM
                     QTALGATADTITWVLTSYIVASAIAIPITGWLSDRFGSRNLFLAAVAGFVIASMLCGI
                     ATNLNEMVGFRVLQGISAAFINPLSQTVMMDINPPSKQARAMTIWGQGIMVGPILGPV
                     LGGWLTDNFDWRWCFYVNVPVGIFTFAVMWALLPSKPLRRRRFDLFGFALLALAVSAF
                     QVMLDRGQQLDWFYSWEVRIEAGLALAAAWMFGVHLFTGQHPMFERALVTNRNMATGM
                     FFMIVIGIVMFATMALLPPMLQRIWNYPVVDAGLLLAPRGVGVLITMTVAGKLMGKVD
                     PRWLVGTGLAIAALSLWEMTSWSLGMDRTWIILSGTLQGLGMGLVFMPLNLTAFATLD
                     PKYRTDGASLLNLLRSIGASAGISIVTTFLARNLQTSHADLAGHVTPFSLPAIDPTYA
                     KSLGGIGDSALAMIDAEVNRQALMIA"
BASE COUNT          753 a         1451 c         1361 g          808 t
ORIGIN      
        1 gcttccgcct tggtaggcgc ggcaggctgt tgcgcgacgg cgatgccgcc ccccagcgca
       61 gcagccaggg cgagcgacga aatcatcatg tttttcatgg gcatccccct tcgatccgat
      121 accgccaaat gacgcgcccg gatcgtggag gtcaagcggc gaggaagcgg gccagcgcct
      181 tacccaattc gggctttaca accgcgctca tgtggccgcc cggcaccagt tcgagccggc
      241 cgttcggcag cgcctccgcc agcgcggagg ccgagccgtt atcgttatct tcttctccgc
      301 acagcaccaa aaccggcgtt tcgatcgcgc ggatcacgtc ctccggcgtg tccgtgaacg
      361 tgttcaggat gttgagcagc gcgaccggct cgctcttcgt ggccttgatg aagccctgca
      421 cattcccctc cggcgtgccc ggccggaagc tgccaagatg cgtcagcacg tggcggaaat
      481 ggtcgacgcg gcgtgaggta tggacaagcc cgtccaggcc catgcccgac aggatcgccc
      541 ggttcggcgc cgcgcctcgc gccagcatgc gcgccaccgt ccgcgcgccc agcgaatagc
      601 cgccaaggtc gtaatccgtc agccccagcc gctcgatcag cgccagatta tcgtcggtca
      661 ggacatccgg cggatagaat gacgggtcgt gcggagcgtc gctggcgccg tgggcgcgca
      721 ggtcgggcat gatcacccgg aacccttcgc ccgccacctt ctccgcatgg ccgaagcgga
      781 tccagttcat gtctgcggac gaaatatagc cgtggatcag caccaccggc ctcccctccc
      841 ccagctcgtg ccaggcgagg cgcacgccgt cggcggcggt gaaataatgg gtttggggct
      901 tcatccccgc cccatatcgc ttctcaggac ggaagctcca gtcctgctgc cttccatttg
      961 tccactaacg gctggtactc gtcgctgcgc atccgcttca gccccgaagt gtcgagccat
     1021 gcatcgtgca ggctctctgc accgaaatgg ctggtcggac ggaagcggcc gggatcgtcg
     1081 aagctgccga cggtcaggtc catatttccg ctgccctcga gaaaggcgaa gcccagcggc
     1141 gttccgcact tcgcgcagta cggccgccgc gcgatcggcg agctctgata ccaatccggc
     1201 tcaccattct gccaacgcac attcgcacgc ttcacgttct tgaatgcagc agcgaccccg
     1261 ccggtcgcgc gctggcacat ccggcaatgg cacagatacg cctcgtcatt ttcgatgccg
     1321 acttcgtagc ggacgcggcc gcattggcag ccgccagtga ctgtctccat ggcgaacctc
     1381 ccgacatgcc aatggccgtg cgcgctttgg caatcaacga ttgaataata agcattgcat
     1441 attatatgcg ccgcctatgt cggacacgct cggcttcctc ttcgctgaca ttacgcgcct
     1501 gatgcgccgc gctttcgacg agcgcgcgag caccatcggc gtcacgcgca accagtggcg
     1561 catgctgacc atgctcgctc gccacgaggg cgccaatcag ggccggctcg ccgaattact
     1621 ggacgtcgaa ccgattactt tgtgccgaat ggtggatcgc ctggcggagg ccgggctggt
     1681 cgagcgccgg cccgatccct cggatcgtcg cgcctggcgc atcttcctga ctgatggagc
     1741 gcgtccgatt ctcgcggaac tgcgttctct ggccgagatt ctgatcgagg agactctcga
     1801 tggcctgacc gggcccgatc gcgacctgct gatgtcactg ctcgaacgca tccgcacgaa
     1861 tctcattaat tgcgaacgca aggaaaaggt cgccgctcat ggctgatgca gaccgcccca
     1921 ttatcgccga gcgcgaactc gatgctcctc ccgccgtaaa gccgaagcgg cgctggggcc
     1981 gactggtcgc gctgctcatc gtgccgctgc tgatcgtggc ggtgggctct tatgtctggc
     2041 tcacctccgg ccggtccgtc tcgaccgaca atgcctatgt ccagcaggac aaggtctcgg
     2101 tttcggcgga cgtcggcgga cgcatcgtcg aagtggcggt gcgcgagaac cagcacgtga
     2161 acaagggcga cctgctgttc cgcatcgatc ccgaacctta tcgcatcgcg gtcgaccaag
     2221 cgcgcgccgc gctcgccaat gcccaggtga acgttcagac gctcaagacc gagtatcaag
     2281 gcaaaggcgc cgatatcgaa ggcgcgcggg tcgccatcca gcaggcgcag gaggaattcg
     2341 gccgccaggc ggcgctgatg cagcgcggct tcacgacccg cgcctcctat ctgaatgccc
     2401 agcatgccgt ggagcaggcg cgggtccaac tcgccaatgc cgaggccggg gccgcgcaag
     2461 cccgggtcaa gctggagacc ggtgcggccg ttccaggcgt gaacccgcag atcgccgccg
     2521 cccgcgcaca gctcgatcag gcgctcctga acctgaagcg caccgaagtg cgcgcgcccg
     2581 cgtccggcac cgtcagccag gccgagcgct tgcaggtcgg caaccagatc attcaggcca
     2641 tgcccgcgct cagcatcgtt gtgaacggcc gcacttgggt cgaagccaat ttcaaggaaa
     2701 cgcagctcaa ccagattcgc atcggccagc cggccgagat cgagatcgac gcctattcgg
     2761 gcctcaagct gaaaggccat gtctggagct tcggtgccgg gaccggctcg gaattctcgg
     2821 tgctgccggc gcagaacgcg aacggcaatt gggtgaaagt gacgcagcgc gtgccggtgc
     2881 ggatcgcgat cgacgaagcc tcgccccgtc cgctgatcgc cggcctcagt gcgcatgtga
     2941 aggtcgatgt ccgcaaccac ggctgacgtc ccggcgacgc cggtcgagaa caaaggcctg
     3001 ctgactgtcg cggtgatggc cgcgacggtc atgcagattc tcgatacgac gatcgcgaac
     3061 gtggcgctgc cgcacatgca gaccgcgctc ggggcgacgg ccgacaccat cacctgggtg
     3121 ctgaccagct atatcgtcgc atcggcaatc gcgattccga tcaccggctg gctctccgat
     3181 cggtttgggt cgcgcaacct gttccttgcc gcagtcgccg gcttcgtgat tgcctcgatg
     3241 ctgtgcggca tcgcgaccaa cctcaacgaa atggtcggct ttcgcgtgct ccagggcatt
     3301 tccgcggcgt ttatcaaccc gctgtcgcag acagtgatga tggacatcaa cccgcccagc
     3361 aaacaggcgc gggcaatgac gatctggggc cagggcatca tggtcggccc gatcctgggg
     3421 cccgtgctcg gcggctggct gactgacaat ttcgactggc gctggtgctt ctatgtcaac
     3481 gtgccggtgg gcatcttcac tttcgcggtg atgtgggcgc tgctgccctc gaagccgctt
     3541 cgccggcgcc gtttcgatct gtttggtttt gcgctgctcg ctctcgctgt ctcggctttc
     3601 caggtcatgc tggaccgcgg ccagcagctc gactggttct acagttggga agtgcggatc
     3661 gaagccgggc ttgccctcgc cgccgcgtgg atgttcggcg tgcatttgtt cacgggccag
     3721 catccgatgt tcgagcgcgc cctggtcact aaccgcaaca tggcaaccgg catgttcttc
     3781 atgatcgtga tcgggatcgt gatgttcgcg acgatggcgc tgctgccgcc gatgctgcag
     3841 cggatctgga attatccagt ggtcgacgca ggcctgttgc ttgcgccacg cggcgtcggc
     3901 gtgctcatca cgatgacggt ggctggcaaa ttgatgggga aagtcgatcc gcgctggctg
     3961 gtcggcaccg gtcttgcaat cgccgcgctc tcgctatggg aaatgacgag ttggtcgctg
     4021 ggcatggacc ggacctggat catcctcagc ggtacgctcc aggggctggg catgggactc
     4081 gtcttcatgc ccctgaacct cactgccttc gcaacgctcg accccaaata ccgcaccgac
     4141 ggggcgagcc tgctgaacct gcttcgcagc atcggcgcgt cggcgggaat ttcgatagtc
     4201 accacttttc tcgcgcgtaa tttgcagacg agccacgccg atcttgccgg ccatgtgacg
     4261 ccgttcagcc tgccagcgat cgacccgact tacgccaaga gcctgggcgg gatcggcgac
     4321 tcagcgctcg cgatgatcga tgccgaagtg aaccgacagg cgctgatgat cgc
//
LOCUS       DASQVK010000091         2164 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_132372,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000091 DASQVK010000000
VERSION     DASQVK010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132372"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..476
                     /locus_tag="VE567_01945"
     CDS             <1..476
                     /locus_tag="VE567_01945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DbpA RNA binding domain-containing protein"
                     /protein_id="HYZ47635.1"
                     /translation="RAHRAALPEPEELIDGTPEARRAAQAERHRPGFDDVVWFRMDIG
                     RRQNADPRWLLPLLCRRGHVTKAEIGAIRIAANETWFQVPRAIMSKFAAAVARTANAD
                     REDESGIRIEQADGPPAASPRQHARPDVRQRRGPNAGRPRQADTGKPRRKGPRPR"
     gene            491..634
                     /locus_tag="VE567_01950"
                     /pseudo
     CDS             491..634
                     /locus_tag="VE567_01950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019051787.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YaiI/YqxD family protein"
     gene            697..876
                     /locus_tag="VE567_01955"
     CDS             697..876
                     /locus_tag="VE567_01955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47636.1"
                     /translation="MTDRFERHRQPWRPDEIQKLHTLAKKGMALKAIAKALTRSEESV
                     KERAKLDGLAIAKLH"
     gene            937..2061
                     /locus_tag="VE567_01960"
     CDS             937..2061
                     /locus_tag="VE567_01960"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HYZ47637.1"
                     /translation="MCAAVAGQRGRRVLVIDHADRPGKKILISGGGRCNFTNLGTVPE
                     RFLSANPHFARSALARYQPADFVALVERYGIAWHEKTLGQLFCDGSARQIVAMLLDQC
                     AQGAVEVRLDQPVSAIEHADARFRVTTKGETISARALVVATGGPSIPKMGATGFAYDV
                     ARRFGLKVVEPRPALVPLTLSGDDVLFRALSGLSADVVATAGKAAFREAALFTHRGLS
                     GPAILQVSSYWRHGEPILVDFLPDHAPGWLKAAKRTSPRAHATKLLARALPERLAQVL
                     ADRLSLSGELANLPDAKLAAAENALEAWRFMPNGTEGFAKAEVTAGGVSTAGLSSQTL
                     EARTVPGLYLIGEAVDVTGWLGGYNFQWAWASGWAAGQAL"
BASE COUNT          337 a          736 c          742 g          349 t
ORIGIN      
        1 tgcgcgcgca ccgcgccgcc ttgcccgagc ccgaagagct gattgacggc acgcccgaag
       61 cgcgtcgcgc cgcacaggcc gagcggcatc gccccggttt cgacgatgtc gtctggttcc
      121 gtatggatat cggccggcgt cagaatgccg atccgcgctg gctcctgccg ctgctctgcc
      181 ggcgcgggca cgtcaccaag gccgagatcg gtgcgatccg catcgccgcc aacgaaacct
      241 ggttccaggt gccgcgcgcg atcatgagca agttcgccgc agcggtcgcg cgcacggcca
      301 atgccgatcg cgaggatgaa agcggcatcc gcatcgagca ggccgacggc ccgccggccg
      361 cctcgccgcg ccagcacgcg cgcccggacg tccggcagcg gcgcggaccc aacgctggtc
      421 ggccgcggca ggccgacacc ggcaagccac gccgcaaggg ccctcgcccg cggtgacaga
      481 cttgcgcatt ttgctcacgc ccgcactcat ggcggatctg cgcgccggcg gcgaccagct
      541 cggtggcccg gcgccgtttt cgaagttgga tggttcgcgc ttcctgcagg cacctaacgc
      601 tgcgctggta cggcttcagc gtaggcggcc gtagtcgccc gccgattgag ccgctacggc
      661 taggtagccc cgctctgccg catcccgagg aatatcatga ccgatcgttt cgaacgccac
      721 cgccagcctt ggcggcccga cgagatccag aaacttcaca cgctcgccaa aaagggcatg
      781 gccttgaagg cgatcgcgaa ggcgctgacc cgcagcgagg aatcggtcaa ggaacgcgcg
      841 aagctcgacg ggctggcgat cgcaaagctg cactgaacgc aagccgcagt ggacgatttg
      901 gacgcgatcg tgctcggcgc aggggccgcc gggctgatgt gtgcggccgt cgcggggcag
      961 cgcggccggc gcgtgctggt aatcgatcat gccgaccggc cggggaagaa gatcctgatc
     1021 tcgggcggtg ggcgctgcaa cttcacgaat ctgggcaccg ttccagagcg cttcctgtcc
     1081 gccaatccgc atttcgcgcg ctcggcgctc gcccgatacc agccggccga cttcgtcgcg
     1141 ctggtagagc ggtacgggat agcgtggcac gaaaagacgc tagggcagct cttctgtgac
     1201 ggttcggcac gccagatcgt cgccatgctg ctcgaccaat gtgcgcaagg agcggtcgag
     1261 gtccggctgg atcagccggt ctccgcgatc gagcatgcgg acgcgcggtt ccgggtaacg
     1321 acgaagggcg agaccatcag tgcccgcgcg ctggtggtcg cgaccggtgg cccttctatc
     1381 cccaagatgg gggccacggg cttcgcctat gacgtcgcca ggcgcttcgg actgaaggtg
     1441 gtcgagcctc gcccggccct ggtgccgctg acgctcagcg gcgacgacgt gctgttccgg
     1501 gccctgtcgg ggctgtcggc cgacgtcgtg gcgacggcgg gtaaggcggc attccgtgag
     1561 gcggcactgt tcacgcatcg cggcctttcc ggcccggcga tccttcaggt ctcctcctat
     1621 tggcgtcatg gcgagccgat cctggtcgac ttcctgccgg accatgcgcc gggctggcta
     1681 aaggcggcca agcggacctc cccgcgcgcc catgcgacga agctgctggc acgcgccctt
     1741 ccggagcgct tggctcaagt gctggctgac cgcctcagtc tcagcggcga gcttgccaac
     1801 cttcccgatg ccaagcttgc tgctgccgag aacgcattgg aggcctggcg ctttatgcca
     1861 aacggcaccg agggtttcgc caaggctgag gtaacggcag gcggcgtcag caccgcgggc
     1921 ctgtcctccc aaaccctcga ggcgcgcacg gtgccggggc tctacctgat cggtgaggcc
     1981 gtcgatgtga ccgggtggct gggcggctat aatttccaat gggcctgggc aagcggttgg
     2041 gctgcaggac aggcgctgta gcgggagccg gcgatctgct gcggccttcc acccatttga
     2101 tttcgccgcc ccgacatcgt gactgccagc gtgccgttgg gacgctaccc cgtcaggaag
     2161 ctgt
//
LOCUS       DASQVK010000092         2186 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_5897, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000092 DASQVK010000000
VERSION     DASQVK010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2186)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2186)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2186
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5897"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..387)
                     /locus_tag="VE567_01965"
     CDS             complement(<1..387)
                     /locus_tag="VE567_01965"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HYZ47638.1"
                     /translation="MVGVGDHAPDAEFEGPDGSPTTLAAWRGKPLVLYFYPKDDTSGC
                     TKEAQDFTTLADEFAGAGVALLGVSKDPAKKHKAFTEKYGLKVPLGTDAEGKLLEAFG
                     AWVEKSMYGRKYMGIDRSTFLVDKEGK"
     gene            complement(387..>2186)
                     /locus_tag="VE567_01970"
     CDS             complement(387..>2186)
                     /locus_tag="VE567_01970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-synthetase adenylyltransferase"
                     /protein_id="HYZ47639.1"
                     /translation="LIHGGRDRSLRSATTIPALRALAEAGIIGGDEAGELADAYRLFR
                     TVEHRLQMVDDRQTHQLPADAEALDNVAQLHGLADGTALIASLRPHVESVGRRYDELE
                     EEGAQGLPVGEGLGAALMRVGFNQADAARAVIERWRGGGVRAVQSPAAREALEEVLPG
                     LVAALGAAPDPIGALHRLDDIVGRLPSAINFFRLLAARPPLARLLADILSHAPTLADA
                     LGRRPELLDGLIDATALEPAPPHEDLARTFGAAEFSDYERLLDHVRRAVGERRFALGV
                     QLIEGGADPLEVSAGYARVAEAALQVLAAATVADHARQHGRVPESELVILALGRLGGG
                     ALTHASDLDLVYLFTGDIHASSDGPRPLEATRYYNRLAQRVSGALSVPTAAGALYEVD
                     TRLRPSGTKGLLAVTVESFAEYQRSGAWTWEHMALTRARPVFGSPEARAEAQAIIDET
                     LRRLRDPDTLLKEVISMRAEIAKHKPPKGPLDAKLIEGGLVDLEFCVQAVQLEHRVGF
                     DPRLRPAIDALIAAGLLPAGFAFAHDMLTRLLVTLRLVAPDAREPAPPTRALIARACG
                     FEAWDELLEGFAQARQSVREVWDGLIARSRESR"
BASE COUNT          344 a          785 c          726 g          331 t
ORIGIN      
        1 cttgccctcc ttgtcgacca ggaaggtcga gcggtcgatg cccatatatt tgcggccgta
       61 catgctcttt tcgacccagg cgccgaacgc ttccagcaac ttgccctcgg catcggtgcc
      121 gagcgggacc ttcagcccat atttctcggt gaacgccttg tgcttcttgg ccggatcctt
      181 ggagacaccg agcaaagcga cgcccgcgcc tgcaaattcg tcggccagcg tcgtgaaatc
      241 ctgcgcttcc ttcgtacagc cggacgtgtc gtccttcggg tagaaataga gcaccagcgg
      301 cttgccgcgc caggcggcga gcgtcgtcgg gctgccgtcc ggcccctcga attccgcgtc
      361 cggcgcgtga tcccccactc caaccattat cgactctccc tgctgcgggc gatcagcccg
      421 tcccagacct cgcgcacgct ctgccgcgct tgggcaaagc cttcaagcag ctcgtcccag
      481 gcctcgaacc cgcaggcgcg ggcgatcagc gcccgggttg gcggggccgg ctcgcgcgca
      541 tcgggcgcga ccaggcgcag cgtgaccagc aggcgggtca gcatatcgtg cgcaaaggcg
      601 aagccggcgg gcagcagccc ggccgcgatc agcgcgtcga tcgccgggcg cagccgtgga
      661 tcgaatccga cgcgatgctc gagctgcacc gcctggacgc agaattcgag atcgaccagc
      721 ccgccctcga tcagcttggc atcgagcggt cccttgggcg gcttgtgctt ggcgatctcc
      781 gcccgcatcg agatcacttc cttcagcagc gtgtcaggat cgcgcaagcg gcggagtgtt
      841 tcgtcgatga tggcctgtgc ctcggcgcgc gcttccggcg agccgaacac cggccgcgca
      901 cgcgtgagcg ccatatgctc ccaggtccag gcgccggaac gctgatattc ggcgaaggat
      961 tcgacagtga ccgcgagcag ccccttcgtg cccgagggcc gcagccgcgt gtcgacctcg
     1021 taaagcgcgc ccgccgcagt cggcaccgag agggcgcccg atacgcgctg ggcgagccgg
     1081 ttgtaatagc gcgtggcctc cagcggccgc ggcccatcgg agctcgcgtg aatgtcgccg
     1141 gtgaagagat agacgaggtc gagatcggag gcatgggtga gcgcgccgcc gccgagccgg
     1201 ccaagcgcca ggatcacgag ctcgctttcc ggcactcgcc cgtgctggcg cgcatgatcg
     1261 gcgaccgtgg cggcggcgag cacttgcagc gctgcttccg cgacgcgcgc atagccggcc
     1321 gaaacctcga gcggatcggc acctccttcg atcagttgca cgccgagcgc aaatcgccgc
     1381 tcgccgactg cacgtcgaac atgatcgagc agccgctcat agtcgctaaa ctccgcggcg
     1441 ccgaacgtgc gcgccaggtc ctcgtgcggc ggcgcgggct ccagcgcggt cgcgtcgatc
     1501 agcccgtcga gcagctcggg ccgccggccg agcgcatcgg caagcgtcgg cgcatggctc
     1561 agaatatcgg cgagcagccg cgcgagcggc ggacgggcgg cgagcaaccg gaagaagttg
     1621 atcgcgctcg gcaaccggcc gacaatgtcg tccagccggt gcagcgcgcc gatcgggtcg
     1681 ggggcagcgc ccagtgcggc gaccaggccg ggcagaactt cctccagcgc ctcgcgggcg
     1741 gcggggcttt ggacggcgcg aacgccgccg ccgcgccagc gctcgatcac ggcgcgcgcg
     1801 gcgtccgcct ggttgaagcc aacacgcatc agcgccgcgc ccaacccttc gccgaccggc
     1861 agcccctgcg cgccttcctc ttccagctcg tcatagcgcc tgcccacgct ctcgacgtgc
     1921 ggccgaagcg aagcgatcaa cgccgtgcca tcggcaagcc catgcaattg cgcgacattg
     1981 tcgagcgcct cagcatctgc cggtaactgg tgggtctggc ggtcgtcgac catctgcagc
     2041 cgatgctcga ccgtgcggaa caggcgatag gcgtcggcga gctcgccagc ttcgtcgcca
     2101 ccgatgatcc ctgcctcggc aagcgcgcgc agcgccggta tcgtcgtcgc cgacctcagg
     2161 ctccggtccc gcccgccatg gatcag
//
LOCUS       DASQVK010000093         2013 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_290749,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000093 DASQVK010000000
VERSION     DASQVK010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2013
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290749"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..326
                     /locus_tag="VE567_01975"
     CDS             <1..326
                     /locus_tag="VE567_01975"
                     /EC_number="2.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019051744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA-guanine transglycosylase"
                     /protein_id="HYZ47640.1"
                     /translation="FDCVLPTRSGRTGQAFTWSGPINIRNARFAEDQEPLDPDCTCAV
                     CGTWSRAYLHHLVRAGEILGAMLMTEHNLSFYQQLMAALRSAIAEGRLAAFAKQFRGS
                     YTRAE"
     gene            394..984
                     /locus_tag="VE567_01980"
     CDS             394..984
                     /locus_tag="VE567_01980"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HYZ47641.1"
                     /translation="MSEAALEEGRRHARTNTMLAATIEFGGEQLDVFVRNLSVAGAMI
                     EGRCALPGQGDSVVLSRNGLQIPATVMWRAEGRCGLSFARLVKVEDLVRRGKGAIPVH
                     QNRVDAIQRALREKRSVPSFQETEELVGAAAIGKRLVDEVGYAHRLVEMVNEMLSDDA
                     YILSRYAVTLQQLDEAEQLLRKIYGNLSAEGAPGRC"
     gene            1080..1985
                     /locus_tag="VE567_01985"
     CDS             1080..1985
                     /locus_tag="VE567_01985"
                     /EC_number="2.8.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF012888.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase domain-containing protein"
                     /protein_id="HYZ47642.1"
                     /translation="MLQRTSWPAKTRELHNHHMDSTVWNDFKFRDGDIVIGTYAKSGT
                     TWTQQIIGQLIFGGAENVDVPTLSPWLDMRIMPRAEMLAGLEAQPNRRFVKTHLPVDA
                     LVFSPAAKYVYIARDGRDVAWSLHNHLFHATDEFYHLINDTPGRVGPPLARPTADIRQ
                     FFLEWAERDGYPCWSFWENIRTWWEIRHLPNVMLLHFADLKSDAEGKMRELASFLEIE
                     VADSAWPRILEHTSFDYMKRNAEKTVPLGGVLWEGGAATFINKGTNGRWRDALTDADN
                     RRYSELAVQHLGAECAAWLESGELA"
BASE COUNT          392 a          620 c          635 g          366 t
ORIGIN      
        1 tgttcgactg cgtgctgccc acgcgtagcg gacgaaccgg gcaggctttc acctggagcg
       61 gcccgatcaa catccgcaac gcgcgcttcg ccgaggacca agagccgctc gatcccgact
      121 gcacctgcgc ggtgtgcggc acgtggagcc gtgcctatct ccaccatctc gttcgtgccg
      181 gcgaaattct cggcgcgatg ctgatgaccg agcacaatct gagcttctac cagcagctca
      241 tggcggcgtt gcggagcgcc atcgctgagg gaaggcttgc cgccttcgca aaacaattta
      301 gaggaagcta cacgcgagcg gagtgacgca aacgatttcg caagcttcgt cggtctatcc
      361 gatgctcgaa acagcctatc atcggggttg cacttgtccg aagcggcact tgaagaaggt
      421 cgtcgtcacg cacgcaccaa tacgatgctc gccgcgacga tcgagttcgg tggtgagcag
      481 ctcgacgtgt tcgtccgcaa cctctcggtc gcaggcgcga tgatcgaagg gcgctgcgcc
      541 ctgccaggcc aaggcgacag cgtggtcctt agccgtaacg gccttcaaat acccgcgacc
      601 gtgatgtggc gtgcagaggg ccgctgcggc ttgtctttcg cgcggctagt gaaggtcgaa
      661 gacctggtcc ggcggggcaa aggcgccatc cctgtccatc aaaatcgcgt cgatgcgatc
      721 cagcgggccc tgcgtgaaaa gcgctcggtt ccgagctttc aggaaaccga ggaattggtc
      781 ggcgcggcgg cgatcggcaa gcggctggtc gacgaagtcg gctacgcgca tcggctggtc
      841 gaaatggtca acgagatgct gtccgacgac gcctatattc ttagccgcta tgccgtcacg
      901 ttgcagcagc tcgacgaggc cgagcagctt ttgcgcaaga tctatggcaa tctttccgcc
      961 gagggcgcgc ccggccgctg ctgacggcgt gtcggtcgtc acaggcgaca tgctcgtcgc
     1021 aacctagatg ccttcagcaa gagtcgcgtg cattggcgcg gcctgcgagg aggaaaatca
     1081 tgctgcaacg gaccagctgg cccgcgaaga cgcgcgagct gcacaaccat catatggact
     1141 cgaccgtttg gaacgacttc aagttccgcg acggcgacat cgtgatcggc acctatgcca
     1201 aatcaggcac gacgtggacg cagcaaatta tcggtcagct catcttcggc ggcgcagaaa
     1261 atgtggatgt gccgacgctt tcaccttggc tcgacatgcg aatcatgcct cgggcggaga
     1321 tgctggcggg cctcgaggcg caacccaatc gtcggttcgt gaagactcac ttgccggtcg
     1381 atgcgctcgt cttcagcccc gccgctaagt acgtctatat cgcgcgggat gggcgcgacg
     1441 tggcctggag cctgcataac catctcttcc atgccacgga cgagttctat caccttatca
     1501 acgacacgcc gggccgggtc ggcccaccgc tcgcgcgccc cacggcggac atccggcagt
     1561 tcttcctcga atgggcggag cgggacggct atccgtgctg gtcgttctgg gagaatatcc
     1621 gaacctggtg ggaaatccgg caccttccca acgtgatgct gctccatttc gccgacctga
     1681 agtctgacgc ggaaggcaag atgcgcgaac tggcgagctt ccttgagatc gaggtagcgg
     1741 atagcgcctg gccgcgaatc ctggagcata ccagcttcga ctatatgaag cgcaatgccg
     1801 agaagaccgt ccccctgggc ggcgtgctgt gggaaggggg cgccgccacc ttcatcaaca
     1861 agggcaccaa cggccgctgg cgcgatgcgc tgacggatgc cgataatcgc cgctattccg
     1921 agctggcggt ccagcatctc ggcgcggaat gcgccgcatg gctggagagt ggcgagctgg
     1981 cctaggccag cccaacttcc aggaatgcag gga
//
LOCUS       DASQVK010000094         2821 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_132419,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000094 DASQVK010000000
VERSION     DASQVK010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2821)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2821
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132419"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1022
                     /locus_tag="VE567_01990"
     CDS             <1..1022
                     /locus_tag="VE567_01990"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HYZ47643.1"
                     /translation="GKGEPVKALAAQFPDLRRFIREGYVRYAFTQFGVPYVVSIQCLA
                     SAARERRLACREAYPVAERFLRALRVAGGLPSQPRRDIASEIFAQPLAASTDFSYRPS
                     GDIVANSGHRKQGGRTDLAVYLQIRFPLQKPPAFVHSQSFGGRGDQYPWQDNFCETRS
                     FEVGQCGGGYGHQGQDIRPAPCPPGDEGGAACDPRRQAVVAVRDGVVIRSPRQQAVTL
                     QVNTRTEHIRFRYMHMNPSSMDADGLLNGRRVAEGEKIGVVSNYLDHPNGTSRHLHFD
                     VQVFTRNGWLWVNPYTTLVSVYERLIRGRGREIGPDPPPAAAVAHAVPEDVLRRLEMH
                     EGDGN"
     gene            1328..2560
                     /locus_tag="VE567_01995"
     CDS             1328..2560
                     /locus_tag="VE567_01995"
                     /inference="COORDINATES: protein motif:HMM:TIGR02283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
                     /protein_id="HYZ47644.1"
                     /translation="MRQPDSPKSPARRAFLRASLAAGGLLTAQISALAVAPAGFNQWR
                     DAFRARALAKGISEATWTRVMGRIEPDMSVFRQMQNQPEFNEQIWQYINRRVSDWRII
                     NGREALKKNEALFGRIEKDFGVERGTLLALWGVESAYGDPLVQQNHMKPVFPSLAALA
                     WNEPRRKAYWETELINALRIVDRGWSTPEEMRGSWAGAMGHSQWMPEVWLNVGLDYDG
                     DGRVSPFGKPDDALGSTAKYLVNRGKYHRGEHWGYEVRARGGAGGNRSYAAWASAGVT
                     RADSQPFPQPNASAQLWIPVAGGPAFLLGPNFYSVKSYNPSMNYALAICHLGDRILGA
                     PPFIQPFPGSERALTLAEVQEMQTRLTKAGFDTGGTDGRVGNDTMKAIRDYQTKTGIL
                     PADGYGGLKVLARLRQGG"
     gene            complement(2654..>2821)
                     /locus_tag="VE567_02000"
     CDS             complement(2654..>2821)
                     /locus_tag="VE567_02000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYZ47645.1"
                     /translation="DPEERAKFATPLGRAGQAREIAQGVLYLASDASSYVTGTELVID
                     GGMYAGGVARR"
BASE COUNT          478 a          954 c          913 g          476 t
ORIGIN      
        1 gcggcaaggg cgagccggtc aaggcactgg cggcgcaatt cccggacctg cgccgcttca
       61 ttcgcgaagg ctatgtgcgc tacgccttca cgcagttcgg cgtgccctat gtggtctcga
      121 tccagtgcct cgcctcggcc gcgcgggagc gccggctggc ctgccgcgag gcctatcccg
      181 tcgctgaacg cttccttaga gcccttcgcg tcgccggcgg cctgccctcg cagccgcgtc
      241 gggatatcgc ctccgaaata ttcgcgcagc cgctcgctgc ctcaactgat ttctcctatc
      301 ggccaagcgg cgacatcgtc gccaatagcg gccaccgcaa acagggcggc cgcaccgacc
      361 ttgccgtcta tttgcagatc cgctttccgc tgcagaagcc gcccgccttc gtgcattcgc
      421 aatcgttcgg cgggcggggc gaccaatatc cctggcagga caatttctgc gagacacgca
      481 gttttgaggt cgggcagtgc ggcggcggtt acggccatca ggggcaggat atccgccccg
      541 cgccctgccc cccgggcgac gaaggaggcg cggcctgcga ccccaggcgg caggcggttg
      601 tcgcggttcg cgatggcgtc gtgatccgct cgccaagaca gcaggccgta acgctgcagg
      661 tcaacacccg caccgagcac atccgctttc gctacatgca catgaacccc tcaagcatgg
      721 acgccgacgg cctactcaac ggccgccgcg tggccgaggg cgaaaagatc ggcgtcgtct
      781 cgaactatct cgaccacccc aacggcacct cgcgccacct gcatttcgac gtgcaggtgt
      841 tcacccgcaa tggctggctg tgggtcaatc cctacaccac cctggtctca gtctatgagc
      901 gcctgatccg cggccgcggc cgcgagatcg gccccgatcc tccaccggcc gccgccgtgg
      961 cccacgcggt gccggaggac gtgctccgtc gcctcgagat gcatgagggt gacgggaact
     1021 agactaggcc gcgtgcgaga ctgggtcggc ggcagcgaga gggttgccgt cgtggatgtc
     1081 aggttcgtct cctctcggtg agatggtgct gcgtgcctat cccgcgcgga tcgcgctgct
     1141 cacgctcgtg cgatgggtcg ccggctcgcg gccggcctca acgccggggc ggaactcacg
     1201 gtgcggcgct ggctgtccaa aatcgccaca gagctgcagg atagctagcc gcggcgtcat
     1261 gttttttggc gggcgcaggc ccgcattgct tttggcgctc gcaggcccgc attgttacac
     1321 tggtcacatg agacagcctg attctccgaa atccccagcc cgccgcgcct tcctccgggc
     1381 aagccttgcg gcgggcggcc tgctgaccgc gcagatttcg gcgttggcgg tcgcgccagc
     1441 cgggttcaac cagtggcgcg acgcctttcg cgcccgcgca ttggcaaaag gcatttcgga
     1501 agcgacctgg acacgggtga tgggccgcat cgagcccgac atgagcgtgt tccggcagat
     1561 gcagaaccag ccggagttca acgagcagat ctggcaatac atcaaccgcc gcgtctcgga
     1621 ctggcgcatc atcaacggcc gcgaggcgct gaagaagaac gaagccctgt tcggccggat
     1681 cgaaaaggat tttggcgtcg aacgcggcac gctgctcgcg ctatggggag tcgagtcggc
     1741 ctatggcgat ccgctggtgc agcagaacca catgaagccg gtgttccctt cgctggcagc
     1801 cctcgcctgg aacgagccgc gccgaaaagc ctattgggag accgagctga tcaatgcgct
     1861 gcgcattgtc gatcgcggct ggagcacgcc tgaggagatg cgcggctcct gggccggcgc
     1921 gatgggacac tcgcaatgga tgccggaagt ctggctcaat gtcggcctgg attatgacgg
     1981 cgacggcaga gtctcgccat tcggcaagcc ggacgacgcg ctcggctcca ccgcgaaata
     2041 tctcgtcaac cgcggcaaat atcaccgcgg cgaacattgg ggctatgaag tccgcgcccg
     2101 cggcggcgct ggcggcaacc gcagctacgc ggcatgggcg agcgccggcg tcacccgcgc
     2161 cgacagccag ccgttcccgc agccgaacgc ctcggcacaa ttgtggatac cggtggcggg
     2221 cggaccggct ttcctgctgg ggccgaattt ctattcggtg aagagctaca atccttcgat
     2281 gaactatgcg ctcgcgatct gccatctcgg cgaccgcatt ctgggcgccc cgcccttcat
     2341 ccagccgttc cccggctccg agcgcgcgct gacacttgcc gaagtgcagg agatgcagac
     2401 gcgcctgacc aaggccgggt tcgataccgg cggcaccgac ggccgcgtcg gcaacgacac
     2461 catgaaggcg atcagggact atcagaccaa gacggggatt ctgccggcgg acggctatgg
     2521 cgggctgaaa gtcttggcgc gactgaggca gggcggctag ttcgcgcgtt cgttgcgaga
     2581 cgcgaagcga cgaagcaacc catgcttccg ctcgcggcga gatggattgc ttcgctctgc
     2641 tcgcaatgac aagctacctt cgggccacgc caccggcata cataccgccg tcgatgacga
     2701 gctcggtccc ggtgacgtag ctcgaagcgt ccgaggccag atacagcacg ccttgcgcga
     2761 tttccctggc ctgcccggcg cgcccgagcg gcgttgcgaa cttcgcccgc tcctccggat
     2821 c
//
LOCUS       DASQVK010000095         2147 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_69219, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000095 DASQVK010000000
VERSION     DASQVK010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69219"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..191)
                     /locus_tag="VE567_02005"
     CDS             complement(<1..191)
                     /locus_tag="VE567_02005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008068900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HYZ47646.1"
                     /translation="MARILVTGGAGFIGSALVRHLIANTEHEVLNVDALTYAGNLSSV
                     AGVANSNRYRFAKADICDPA"
     gene            complement(191..754)
                     /gene="rfbC"
                     /locus_tag="VE567_02010"
     CDS             complement(191..754)
                     /gene="rfbC"
                     /locus_tag="VE567_02010"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008830 - dTDP-4-dehydrorhamnose
                     3,5-epimerase activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HYZ47647.1"
                     /translation="MPVVRITPKRFEDARGWFSETYRRDRFVAAGIEAEFVQDNQSFS
                     RPAGTLRGIHFQSPPHAQAKLVRCLQGRIWDVAVDLRQGSPTYGQSVAAELTADKGEQ
                     LYIPAGFGHAFLTLEPDTQVAYKVDDFYAPECDGGIRWDDPYLAISWPLPGAAPELSD
                     KDKKLPLLKDFISPFAYDGRPLQLVDA"
     gene            complement(830..1138)
                     /locus_tag="VE567_02015"
     CDS             complement(830..1138)
                     /locus_tag="VE567_02015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phasin family protein"
                     /protein_id="HYZ47648.1"
                     /translation="MLEPDSMKAAGEAVKERATKAAENTAALSVKVIDHAEENTRQAF
                     AALRAAAQAGGLSELMKVQSEYVRDQGTRSMAQVREIGELIAQFGREAMSGLSGKKEG
                     "
     gene            complement(1236..1583)
                     /locus_tag="VE567_02020"
     CDS             complement(1236..1583)
                     /locus_tag="VE567_02020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47649.1"
                     /translation="MIRRYYDAINAHDFGTAYQQWRGDGEATGKSFDAFRNGFRGTRR
                     SVVAIGPPGPSEGAAGSLYITIPVTIAALRDDGREERFAGTYVVRRVNDVDGASAQSR
                     RWHIDSAKIRKLR"
     gene            complement(1820..>2147)
                     /locus_tag="VE567_02025"
     CDS             complement(1820..>2147)
                     /locus_tag="VE567_02025"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007012133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase"
                     /protein_id="HYZ47650.1"
                     /translation="YFSVAHDPTQLNRQGPDTGPSYRSAIFPIGAEQERVARAYLAQL
                     AVAKIWPRPIVTRIERGPFFPAEAYHQDFARLHPDHGYIRTWDEPKMAALKAAFPQLW
                     HNSWSN"
BASE COUNT          364 a          697 c          710 g          376 t
ORIGIN      
        1 gcagggtcgc agatatcggc cttggcgaag cggtagcggt tgctgttcgc gacccccgcg
       61 accgaagaca gattgccggc ataagtgagc gcgtcgacat tgagcacctc atgctcggtg
      121 ttggcgatca aatgccggac cagcgccgag ccgataaagc cggcgccgcc ggtgacgaga
      181 atacgggcca ttatgcgtcc acaagttgaa gagggcgccc gtcataagcg aacgggctga
      241 tgaaatcctt gagaagcgga agcttcttgt ccttgtcgga cagctcgggc gcggcgcccg
      301 gcagcggcca ggagatggcg aggtagggat cgtcccagcg aatgccgcca tcgcattcag
      361 gcgcgtagaa atcgtcgacc ttataggcga cctgcgtgtc gggctcgagc gtcaggaagg
      421 catggccgaa gccggcggga atgtagagct gctcgccctt gtccgccgtc aactcggccg
      481 cgaccgattg accatatgtc ggcgaaccct gccgcaaatc gaccgcgaca tcccagattc
      541 ggccttggag gcaccgcacc agcttggcct gagcgtgcgg cgggctctgg aaatgaatgc
      601 cgcgcagcgt gcccgccggg cgcgagaagg actggttgtc ctgcacgaac tcggcctcga
      661 tccccgccgc cacgaaacga tcgcgccgat aggtttcgct gaaccagccg cgcgcatcct
      721 cgaaacgctt cggggtgatt cgtacgaccg gcatccacgt ctccgcccaa gcaatcccgg
      781 tgggggtaag acggtgcctg gaccttggcg tcaagccccg acgcgcgcgt tagccttcct
      841 tcttgcccga aaggcccgac atcgcctcgc ggccgaactg cgcgatcaac tcgccgatct
      901 cgcgcacctg ggccatgctg cgcgtgcctt ggtcgcgcac atattcggac tggaccttca
      961 tcagctccga caagccgccg gcctgtgcgg ctgcgcgcaa cgcggcaaag gcctggcgcg
     1021 tattctcctc cgcatgatcg atgactttga cgctgagcgc agcggtgttc tccgccgcct
     1081 tggtcgcccg ttccttcacc gcttcgccgg cggctttcat cgaatcgggt tcaagcatgt
     1141 ttcatctccc tcgcgcggcc ggccggaagc cgagcctttg tcgaccttca aagtcccgct
     1201 ccgccttttc gttcccggcg tcccagttgc tccgcttacc tcaatttccg gatcttcgcc
     1261 gaatcgatat gccagcgccg cgactgggcg gacgcgccgt ccacatcgtt gacgcggcgc
     1321 accacatagg tgccggcgaa ccgctcctca cggccatcgt cgcgcagggc ggcgatggtg
     1381 accggaatag tgatgtagag cgaaccggcc gccccttcgc ttgggccggg cgggccgatc
     1441 gcgacgaccg accggcgcgt tccgcggaag ccgtttctga acgcgtcgaa gctcttgccg
     1501 gtcgcttcgc cgtcgccccg ccactgctga taggcagtgc cgaaatcatg cgcgttgatc
     1561 gcgtcgtaat agcgccggat cacggcaact gcggcatcgg gcgaggccgg agcaggctgg
     1621 caggtttcgg cggagcaggg gagagggggc cggtgcgggt gcgccggggg cagggctcgc
     1681 gctctctcgc tggtcctcgc cggctgaggc gcggccccgt catcgcaagc ggcgagcaac
     1741 aggcaaagcg tcatcagcgc gtggcgtcct gcagggccgg tcttcgtccg gtcccttcct
     1801 gaacggaaca ggctttggct cagttcgacc agctattgtg ccaaagctgc ggaaaagccg
     1861 ctttcagcgc ggccatcttg ggctcgtccc aggtccggat atagccatga tccgggtgca
     1921 gccgcgcgaa atcctgatga taagcctcgg ccggaaagaa ggggccgcgc tcgatacggg
     1981 tgacgatggg ccgtggccag atcttggcga cggcgagttg ggccaggtag gcgcgggcca
     2041 cccgctcctg ctccgcgccg atcggaaaga tcgccgaacg gtagctgggg ccggtatcgg
     2101 gaccctggcg attgagttgc gtcggatcgt gcgcgacgga gaaatag
//
LOCUS       DASQVK010000096         4389 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_37476, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000096 DASQVK010000000
VERSION     DASQVK010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4389
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37476"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            79..855
                     /locus_tag="VE567_02030"
     CDS             79..855
                     /locus_tag="VE567_02030"
                     /EC_number="4.2.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HYZ47651.1"
                     /translation="MSQYETILIERHGAVTLVRLNRPQALNALNSQVLAELIGALADY
                     DADPAQRCLVLTGSEKAFAAGADIKEMSSQGFADMYGSNFFAGWEKVTATRKPWIAAV
                     AGYALGGGCEVAMMADFIIAADTAKFGQPEIKLGVSPGMGGSQRLTRAIGKAKAMEMC
                     LTGRMMDAAEAERSGLVARIVPAAELVEEALKTAKTIAEMPPLAAIANKEMVNAAFET
                     GLAQGVLFERRLFHGLFGTEDQKEGMAAFVEKRPGQWKGR"
     gene            855..1658
                     /locus_tag="VE567_02035"
     CDS             855..1658
                     /locus_tag="VE567_02035"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HYZ47652.1"
                     /translation="MQQGRRPFDLVLGFPQWQGSGRHENLPRGAHATAAICAQFGPLA
                     QVPLSADLEDAHGVRRWQALFAQFRSAKAVLEAWRPGRILTAGGDCAVDIAVIDYLGS
                     RYPGLTVLWVDAHLDANTPETTPSGSFHGMPVAAIMGNAPEPMRPLLGPPVEPARFRY
                     FGTQVGDEGDWAFHRRHNLCTLDPQERLDGPVHIHFDLDVLDPAEFPHVSYPEGALPV
                     REALALVERIARESDVVGLTVTEFAPADAAAAREGSSVIAQLCEAAASQ"
     gene            1669..2562
                     /gene="mmsB"
                     /locus_tag="VE567_02040"
     CDS             1669..2562
                     /gene="mmsB"
                     /locus_tag="VE567_02040"
                     /EC_number="1.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011543323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008442 - 3-hydroxyisobutyrate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006574 - valine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyisobutyrate dehydrogenase"
                     /protein_id="HYZ47653.1"
                     /translation="MRIAFIGLGNMGGGMAANLAKAGHDVRAFDLSGEALANAKKAGC
                     LPAESAAEAATGAEAVVTMLPAGRHVAQVYEEALFGAAAPGTLLIDCSTIDVTTAKRV
                     AEAAAAKGLAAVDAPVSGGIAAAAAGTLTFMVGGSAEAFARAEPILAQMGKAVIHAGP
                     NGSGQAAKICNNLLLGATMIATCEAFLLAEKLGLDPQTFYDISSVSSGQSWSMTSYCP
                     LPGVGPDSPADRDYQGGFAAGLMLKDLKLAIQAASDANASVPMGAEAMALYQAFANSG
                     HAGLDFSGVIKLLGGASVGNG"
     gene            2620..2973
                     /locus_tag="VE567_02045"
     CDS             2620..2973
                     /locus_tag="VE567_02045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47654.1"
                     /translation="MAKKKSKKQRGNFGAIAAVAAAGIGVLGGLLALRRFGGDGSSGA
                     AGAIDRALGKPSGAAADGGSTAADLGLDRPHPGPGDRAPQDFRPDPTAGVSDERRDAF
                     APATMPNPASAEPTM"
     gene            complement(2979..3908)
                     /locus_tag="VE567_02050"
     CDS             complement(2979..3908)
                     /locus_tag="VE567_02050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47655.1"
                     /translation="MRRIVSGMAISLLTGCASLGLNLPKTMGEMSSGYTYVPVDPLLV
                     DIQVEAPLPANAAEWSERRYQACLSRRGKTQDGQPSKADLMDALPDHTIRMAIREMTG
                     STSGSYGPVAVGAAGQSYQVIVDSGFTDTTVVDFGIRVRSGDQLVPIRSVTKETEPAV
                     DIEVVRLDGAPVPSGFEPVSMPIYVGVALRLTATLTVKTGTVDLGLSTLGAKAEAKKV
                     SGNLVVQSLGIYGQQVGATFGIPNELNQTAIQNALVSLGAVKAIVYDRDTGTRPRITG
                     IYNPLPLSSPKLINRIYAALASRPVLWKPCLPA"
     gene            4043..>4389
                     /locus_tag="VE567_02055"
     CDS             4043..>4389
                     /locus_tag="VE567_02055"
                     /inference="COORDINATES: protein motif:HMM:NF016921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MT-A70 family methyltransferase"
                     /protein_id="HYZ47656.1"
                     /translation="MTLWRDLPDRRYDVILADPPWSYYGQQDKWGAAAKFYATAPDEA
                     IVRLPIPDLLADRGVLFLWATSPRLDVAMACLAEWRLNFRGVAFVWVKARKDGGPIGA
                     QGVRPSIVKPTAE"
BASE COUNT          769 a         1351 c         1470 g          799 t
ORIGIN      
        1 tgacgggcgt ttgagagtaa ccgcgcagcg gcccgcttgt cccgaaacaa gttcggggtg
       61 acgaactgag ggagagacat gagccaatac gaaaccattc tcatcgagcg gcacggcgcg
      121 gttacgctcg tgcgcctcaa ccggccccag gccctgaacg cgctgaacag ccaggtgctt
      181 gccgagctga tcggcgctct tgcagattat gacgccgatc cggcgcagcg ctgcctggtg
      241 ctgaccggca gcgaaaaggc gttcgcggcc ggggccgaca tcaaggaaat gtcgtcccag
      301 ggctttgccg acatgtacgg ctccaacttc ttcgccggtt gggagaaagt gacggcgacg
      361 cgcaagccgt ggattgcggc ggtggcgggt tatgcgctgg gcggcgggtg cgaagtcgca
      421 atgatggcgg acttcatcat tgctgccgat actgccaaat tcggccagcc cgagatcaag
      481 cttggcgtct cgcccggtat gggcggatcg cagcgcctca cgcgcgcgat cggcaaggca
      541 aaggcaatgg aaatgtgcct gaccgggcgc atgatggacg cggcggaagc cgagcgctcc
      601 ggcctggtcg cccgcatcgt gcccgcggcg gagctggtgg aagaggcgct caagaccgcg
      661 aagacgatcg ccgaaatgcc gcctctggcc gcgattgcaa acaaggaaat ggtcaacgcc
      721 gcgttcgaga ccgggctcgc ccagggcgtg cttttcgaac gccggctgtt tcacggcctg
      781 ttcggtacgg aagaccagaa ggaaggcatg gccgccttcg tcgagaagcg gccggggcag
      841 tggaaggggc ggtaatgcag caagggcgca ggccgttcga tctggtcctg ggctttcccc
      901 aatggcaagg ttcgggccgg cacgagaatc tgccgcgggg cgcacacgcg acagcagcga
      961 tctgcgcgca attcggtccg ctcgcccaag tcccgttgag cgccgatctt gaggacgcgc
     1021 atggcgtccg gcgctggcag gcgctgttcg cgcagttccg cagtgcgaaa gccgttcttg
     1081 aggcctggcg gccgggacgt attctgacgg cgggcggcga ctgcgcggtc gatatcgccg
     1141 tgatcgacta tcttggttcg cgctacccgg gcctgaccgt tctctgggtg gacgctcacc
     1201 tggacgcgaa caccccagag acgacgccga gcgggagctt tcacggcatg ccggtcgcgg
     1261 cgatcatggg caacgcgccg gagccgatgc gcccgctgct gggccccccg gtcgagcctg
     1321 cacgctttcg ttatttcggc actcaagtcg gggacgaagg cgattgggcg tttcatcgtc
     1381 gccacaatct ttgcacgctg gatcctcagg aaaggctgga cggcccggtg cacatccatt
     1441 tcgacttgga cgtgctcgat ccggccgagt tcccgcacgt ttcatatccg gaaggggcgc
     1501 tgcccgtccg tgaggccttg gcgttggtgg aacgcatcgc gcgggagagc gacgtggtcg
     1561 ggctcaccgt gacggagttt gcgcctgccg atgcagcagc tgcgcgcgag ggcagcagcg
     1621 tgattgccca attgtgcgag gctgctgcct cgcaataatg gagacgatat gaggatcgcg
     1681 ttcatcggcc tcggcaatat gggcggcggg atggccgcga atcttgccaa ggcggggcac
     1741 gacgtgcggg cgttcgattt atcgggcgag gcgctcgcta acgcaaagaa agcgggctgc
     1801 ctgccagccg agagcgccgc ggaagccgcg accggtgcgg aagccgtggt gacaatgctc
     1861 cccgccggcc ggcatgttgc ccaggtgtat gaggaggcgc tgttcggcgc cgcagcgccg
     1921 ggcacgctcc tgatcgactg ctcgacgatc gacgtgacca cggccaagcg cgtggccgaa
     1981 gcggcggccg ccaagggctt ggcggcggtc gatgcgccgg tgtccggcgg cattgcggcg
     2041 gcggcagcgg ggacgctgac cttcatggtc ggcgggtcgg cggaggcgtt cgcgcgcgcc
     2101 gaaccgatcc ttgcccaaat gggcaaggca gtcatccatg ccgggccgaa cggctcgggc
     2161 caggccgcca agatctgcaa caacctgctg ctgggggcga cgatgatcgc cacttgcgag
     2221 gctttcctgc tggccgagaa gctcgggctg gacccgcaga ccttctacga catcagctcg
     2281 gtctcgtcgg gccagagctg gtcgatgacc agctattgcc cgctgccggg cgtaggcccc
     2341 gacagccccg ccgatcgcga ttatcaaggc ggctttgcgg ccgggctgat gctgaaggac
     2401 ctgaagcttg caatccaggc ggcaagcgac gccaatgcca gcgtgccgat gggcgccgag
     2461 gcgatggcgc tctaccaggc ctttgccaat tccggtcatg ccgggctcga tttctccggc
     2521 gtcatcaagc tgctcggcgg cgcctcggtc gggaatggct gagcggaaca ggcagtcggg
     2581 ccgcccgttg agaccgtaac ggtttcaagg agcaaggcca tggccaagaa gaagtcaaag
     2641 aagcaacgcg gcaatttcgg cgcgatcgcg gcggtggctg cagccggcat cggcgtgctg
     2701 ggtggacttc ttgcgctgcg gcgcttcggc ggcgacggct catcgggagc ggcgggtgcg
     2761 atcgaccgcg ccctcggcaa gcccagcggc gccgcggcgg acggcggcag caccgccgcg
     2821 gatctcggtc tcgaccggcc gcaccccggg ccaggcgacc gcgcgcccca ggatttccgt
     2881 ccggatccga ccgcaggggt gtcggacgag cgtcgcgacg ctttcgcgcc agcgacgatg
     2941 ccgaatcccg cgagcgctga gccgacgatg tagctgcttc aggcgggcag acagggtttc
     3001 catagtaccg gcctgcttgc cagagctgca tagatacggt tgatcaattt cgggctgctc
     3061 agtggcaaag gattgtaaat acctgttatt cgaggccggg tgcccgtgtc tcggtcatat
     3121 acaattgctt tgactgctcc caggctaacc aaggcatttt ggatcgcagt ctgattcagt
     3181 tcattaggta tcccgaatgt cgcgccgacc tgctgtccgt aaattccgag cgattgcacg
     3241 accaggttcc ccgaaacctt ctttgcctcg gcctttgctc cgagcgtgct taacccaagg
     3301 tccaccgttc cggttttcac ggtcagtgtc gccgtaagcc gaagtgccac gccaacatat
     3361 ataggcatgg acacaggctc gaagccggac ggcacaggcg cgccatcgag ccgcaccact
     3421 tctatatcta cggcgggctc tgtttctttg gtgaccgatc tgatcgggac cagctggtca
     3481 cccgaccgca cccgaatacc aaaatcgacc acagtggtat ccgtaaaccc tgaatcgacg
     3541 atgacttggt atgattgccc cgcagcccct accgctactg ggccgtagga gccactcgtt
     3601 gagcctgtca tctcacgaat ggccatgcgg atagtatgat ccggcaaagc gtccatcaga
     3661 tccgctttgc tcggctgccc gtcttgagtc ttgccgcgac gcgacagaca ggcctgatat
     3721 cgtcgctctg accattcggc tgcatttgca ggcaggggag cttctacctg gatgtcgacc
     3781 agaagcgggt caacaggtac gtaggtatac ccagatgaca tttcgcccat tgttttgggc
     3841 agattgagcc cgagactggc gcagcctgtc aacaaactga tcgccatacc cgatacgatt
     3901 cggcgcatgt tgcttcctcc ccccgttcgc agcaggatgc cctcttcgct tcccatattc
     3961 ctcttgggac tgctcggatt tgaactgaag attggtccgg aatgaacgat tggttgaatg
     4021 cctttaccgc gcgggcggga cgatgaccct gtggcgcgat ttgccggacc ggcgttatga
     4081 cgtgatcctc gccgatccgc cctggtccta ttacggccag caggacaaat ggggcgcggc
     4141 ggcgaaattc tatgcgaccg cgcccgatga ggcgatcgtg cggctgccga tccctgatct
     4201 gctcgctgac cgcggcgtgc tgttcctctg ggcgacgtcg ccgcggctcg atgtcgcaat
     4261 ggcgtgtctt gccgaatggc ggctcaactt ccgcggcgtc gctttcgtgt gggtgaaggc
     4321 gcgcaaggac ggcggaccga tcggcgcgca aggcgtgcgt ccgtcgatcg tgaagccgac
     4381 cgccgagtt
//
LOCUS       DASQVK010000097         3079 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_259153,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000097 DASQVK010000000
VERSION     DASQVK010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3079)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3079)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3079
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259153"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1023)
                     /gene="lepA"
                     /locus_tag="VE567_02060"
     CDS             complement(<1..1023)
                     /gene="lepA"
                     /locus_tag="VE567_02060"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HYZ47657.1"
                     /translation="MATPLEKIRNFSIIAHIDHGKSTLADRLIQRTGGLSEREMSAQV
                     LDNMDIERERGITIKAQTVRLDWNGYVLNLMDTPGHVDFAYEVSRSLAACEGALLVVD
                     EAQGVEAQTLANVYQSIEHDHEIVPVINKIDLPAAEPEKVRAEIEEVIGLDASEAVLA
                     SAKAGIGIDEVLDAIVKKIPPPKGDPDAPLKAMLVDSWYDPYLGVVILIRVVDGVLKK
                     GQQIKFMQAGTTHLIDRVGVFRPKIENLPELGPGEIGFITAQIKDVAQARVGDTVTDA
                     KRPAAAPLPGFKEVQPVVFCGLFPTDANDFEKLRESISRLRLNDASFSFEMETSAALG
                     FGFRCGF"
     gene            1309..2061
                     /locus_tag="VE567_02065"
     CDS             1309..2061
                     /locus_tag="VE567_02065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007683023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CsgG/HfaB family protein"
                     /protein_id="HYZ47658.1"
                     /translation="MSSSGRTYKDGTTKGASSARRDQERAERQIPVCTRKLGSVAIVE
                     PDNQWWRQYNLGSPEAILKVFIQQSGCFTIVNRGRSMASRNLERAMADSGELQTGSNL
                     GKGQVKAADYFLQPDIVTANRNSGGGGAGAALGAVGGLFGGVGRAFGGLAGAINVKKG
                     EATVTLSVVNARTTEEEALTQGYARKSDVSFGGGAGYGWWGGFAAAGGGGYQDTEIGQ
                     VIVLAYLDAYTKLVTQLGGLPSNAAAAAPQAR"
     gene            complement(2058..2603)
                     /locus_tag="VE567_02070"
     CDS             complement(2058..2603)
                     /locus_tag="VE567_02070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYZ47659.1"
                     /translation="MTRSICLHGPESTGKSTLGPRIAAALGGVYVPEFGRTWSEAKGI
                     GFTMTDLVAIAKGHMADTRAALNRRPPWMILDTDPLMTAVWADMLFGERDPWFDRFTE
                     TADFYLMFDVDVPWVPDGTRMFGTEGLRKRFFELSKKELERRGVPWALVGGTGESRFE
                     HAMQAIEEAAAKGCFPETVQP"
     gene            complement(2600..>3079)
                     /gene="pnuC"
                     /locus_tag="VE567_02075"
     CDS             complement(2600..>3079)
                     /gene="pnuC"
                     /locus_tag="VE567_02075"
                     /inference="COORDINATES: protein motif:HMM:NF016837.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015663 - nicotinamide mononucleotide
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015890 - nicotinamide mononucleotide
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HYZ47660.1"
                     /translation="LYAWIFVQPDVRLYSDALLQIFFFAVQLYGWWNWIRSEAESGEV
                     RVELLPPATRMAWIGAITVATLGWGAVMYRFTNAALPWWDAFIAMTSVAAQILMARRY
                     LENWILWIAVDAIAIGVYAAKGLMLTAVLYFVFLMLSIAGLIGWRKALGRRGEALSA"
BASE COUNT          542 a          998 c         1011 g          528 t
ORIGIN      
        1 gaagccacag cggaagccga agcccagggc ggcgctggtc tccatctcga acgagaaaga
       61 agcatcgttc agccgcagcc tggagatcga ttcgcgcaat ttctcgaagt cgttggcgtc
      121 ggtcgggaac aggccgcaga acacgaccgg ctgcacttcc ttgaagccgg gcaggggggc
      181 ggcggcgggg cgtttcgcgt cggtcacggt gtcgcccacg cgcgcctgcg ccacgtcctt
      241 gatctgcgcg gtgatgaagc cgatctcgcc ggggccgagc tcgggcaggt tctcgatctt
      301 ggggcggaac acgccgaccc ggtcgatcag gtgcgtggtg ccggcctgca tgaatttgat
      361 ctgctggcct ttcttcagca cgccgtcgac gacgcggatc aggatgacga cgcccagata
      421 ggggtcgtac cagctgtcga cgagcatggc tttcagcggc gcgtccggat cgcccttggg
      481 gggcgggatt ttcttcacga tcgcgtccag cacttcatcg atgccgatgc cggctttggc
      541 gctggcgagc acggcttcgg aggcgtcgag gccgatcact tcctcgattt ccgcgcgcac
      601 cttttcgggc tccgcggcgg gcaggtcgat cttgttgatg acgggcacga tctcatggtc
      661 gtgctcgatc gactggtaga cattggcgag cgtctgcgcc tcgacgccct gggcctcgtc
      721 gacgacgagc agcgcgcctt cgcaggcggc cagcgagcgg gagacttcat aggcgaagtc
      781 gacatggccc ggcgtgtcca tcagattgag gacatagccg ttccaatcca gccgcacggt
      841 ctgggccttg atcgtgatcc cccgctcgcg ctcgatgtcc atgttatcaa gcacttgcgc
      901 agacatttcg cgctcgctga ggccgccggt ccgctggatc agccggtcgg ccagcgtcga
      961 cttgccatga tcgatatgcg cgataatact gaaattgcgt attttttcga gcggcgtcgc
     1021 cacttggacc attctttcgg ataaagcttt gcggggccga tagcactcct cgccccgctt
     1081 gccaaaagcc gtgcatcacg gccgcttctg cattattgtc gatcaaaagg ggtcgcacat
     1141 cgcaaagcct gtgactgggg tcacaaaccc gtggcttcgg ccgcgctagg gcgtcggcca
     1201 gcaacaaggc acgcctgggt ttagggagac tttgaagtgc gcaatctcat ctcgactatt
     1261 gccgccgcgg ccgtgctcgc cgccgcgccg gcttcggccc agacgtcgat gtcgtcgtcg
     1321 ggcaggacct acaaggacgg caccaccaag ggcgcctcgt cggctcggcg cgaccaggaa
     1381 cgggcggagc ggcagattcc ggtgtgcacc cgcaagctcg gcagcgtcgc gatcgtcgag
     1441 cccgacaatc aatggtggcg ccagtataat ctcggcagcc ccgaagcgat cctgaaggtg
     1501 ttcatccagc aatcgggctg cttcacgatc gtcaatcgcg gccgctcgat ggccagccgc
     1561 aacctggagc gcgccatggc cgattcgggc gagctgcaga cgggttcgaa cctcggcaaa
     1621 ggccaggtga aggcagcgga ctatttcctc cagcccgaca tcgtgacggc gaaccgcaac
     1681 tcgggcggcg gcggggccgg cgcagcgctg ggcgcggtcg gcggcctgtt cggcggcgtg
     1741 ggccgcgcgt tcggcggcct ggccggcgcg atcaacgtca agaagggcga agcaacggtc
     1801 acgctgtcgg tcgtcaacgc ccgcaccacc gaagaggaag cgctgaccca gggctatgcg
     1861 cgcaagtcgg acgtcagctt cggcggcggc gcgggctatg gctggtgggg cgggttcgcc
     1921 gcggccggcg gcggcggcta ccaggatacc gagatcgggc aggtcatcgt gctcgcctat
     1981 ttggacgcct ataccaagct ggtcacgcag ctcggcggcc tgccgtcgaa cgccgcggcg
     2041 gcagccccgc aggcccgcta aggctggacg gtttcgggga agcagccctt ggcggctgct
     2101 tcctcgatcg cctgcatggc gtgttcgaac cgcgattcgc cggtgccgcc gaccaaagcc
     2161 cagggcacgc cccgccgctc cagctccttc ttcgacagct cgaagaagcg cttgcgcagg
     2221 ccctcggtgc cgaacatccg cgtcccgtcc ggaacccagg gcacgtcgac atcgaacatc
     2281 agatagaaat cggccgtttc ggtgaagcgg tcgaaccagg gatcgcgctc cccgaacagc
     2341 atgtcggccc agaccgcggt catcaacggg tcggtgtcca ggatcatcca gggcgggcga
     2401 cgattgagcg ccgctctggt gtccgccata tggcctttgg cgatggcgac caggtcggtc
     2461 atggtaaagc cgatgccctt ggcttctgac caggtgcgcc cgaattcggg cacgtagacg
     2521 ccgcccagcg cggcggcgat gcgcggtccc agggtggatt tgccggtgct ttccggcccg
     2581 tgcaggcaga tggagcgcgt catgccgaca gcgcctcgcc gcggcgcccg agcgccttgc
     2641 gccagccgat cagtccggca atcgaaagca tgaggaacac gaagtaaaga acggccgtca
     2701 acatcaatcc ttttgccgca tagacgccga tggcaatggc atcgactgcg atccacaaaa
     2761 tccaattctc cagatagcgg cgcgccatca ggatctgcgc cgccacgctg gtcatcgcga
     2821 tgaacgcgtc ccaccagggc agcgccgcgt tggtaaagcg gtacataacc gcgccccagc
     2881 cgagggtcgc taccgtaatc gccccaatcc atgccatgcg cgtcgcgggt ggcagcagct
     2941 cgactctcac ttcgccgctc tccgcttccg accggatcca attccaccag ccgtagagct
     3001 ggaccgcgaa gaagaagatc tggagcagcg catcgctgta gagccgcacg tccggctgga
     3061 cgaaaatcca ggcgtagag
//
LOCUS       DASQVK010000098         2400 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_322491,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000098 DASQVK010000000
VERSION     DASQVK010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2400
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322491"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..592)
                     /locus_tag="VE567_02080"
     CDS             complement(<1..592)
                     /locus_tag="VE567_02080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HYZ47661.1"
                     /translation="MFTTATPLNMQDHGAERVQGALSGVLAALHAILAHLPADLAGIR
                     IRGVPGLASLLGSRDAIGGIAARTLGLSCRPVRAVLFDKTERTNWSLAWHQDRTICVE
                     QRMEVSGFGPWTMKDGMQHVAPPFDLLSRMVTLRVHLDDVPATNAPLLIAPGSHKHGR
                     VPVGAIDRVVRECGSYACLADAGDVWAYSTPILHASE"
     gene            complement(672..1415)
                     /gene="tpiA"
                     /locus_tag="VE567_02085"
     CDS             complement(672..1415)
                     /gene="tpiA"
                     /locus_tag="VE567_02085"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HYZ47662.1"
                     /translation="MARRRLVAGNWKMHGSLSQLGELDAIAEAARAHPEVDVALCPPF
                     TLIAAAAARGDLIIGAQDSHHKDKGAHTGCVSAAMLKEAGAKLAIVGHSERRTDQRES
                     DEEVRAKAEAVIAAGLIAIVCVGEIEAERDAGRAVDVVESQLQGSIPTQATAASLVVA
                     YEPVWAIGTGRTPTPVDVAQMHAAIRAKLRDLLGPEAEGVRILYGGSVKPSNAAELMG
                     VENVDGALVGGASLTAAEFVPIIEAAAKA"
     gene            1534..>2400
                     /locus_tag="VE567_02090"
     CDS             1534..>2400
                     /locus_tag="VE567_02090"
                     /inference="COORDINATES: protein motif:HMM:NF025010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HYZ47663.1"
                     /translation="MLDTFRRLSRSKLGAALFALFVAAVALGFAAADIRGLGINGRVG
                     SDTVAKVGGETIGYAELRQRVQRAFDNARQEQTGLTIQEFVRQGGVDQVLQQMTDAIA
                     LEQFAKEQGFGISRKMEDAQIASAPVFHGLNGAFDQSAFEAFLARQRVTEKQLRADLA
                     RDLYLNLVLVPATGGARAPASLSSLYASMLLEQRTGRLQLVPAAAMKAAPPNDADIAA
                     YYQRNLRRYTMPERRVVRYALLNRTAFEGAAQPSEAEIQQAYNAKKADYAPRETRTIS
                     QVILPSEAAARDL"
BASE COUNT          418 a          827 c          754 g          401 t
ORIGIN      
        1 cttcagatgc gtggagaatc ggcgtcgaat acgcccatac gtcgccagca tctgccaggc
       61 aggcatagct gccgcactct cgcacgacgc gatcaatcgc tcccacaggg acgcgaccat
      121 gcttgtgcga gccgggcgcg atcagcaggg gtgcgttggt ggccggaacg tcgtccaagt
      181 gaacacgcaa tgtcaccatt cgggataaaa gatcgaaggg cggggcgacg tgctgcatac
      241 cgtccttcat ggtccacggc ccgaagccgc tcacctccat gcgctgctcg acgcaaatgg
      301 ttcgatcctg atgccaagca agcgaccagt tggtgcgctc ggttttgtcg aacaggacag
      361 cccgcaccgg tcggcaactc aggccaaggg tccgtgcggc aatccccccg atcgcatccc
      421 gcgagccgag caaggaagcc aatccgggaa ctccccggat ccggatgcca gcaagatccg
      481 ccggaaggtg ggctaaaatg gcgtgcagtg ctgccaagac gccgctcagt gcaccttgca
      541 cgcgttccgc accgtgatct tgcatgttga gcggcgtggc ggtcgtaaac atgtcctgct
      601 tcgataggat cgagaccccg ctccctcaat gtccgcaatg ggtcggttgc tgccattccg
      661 tgtggcgcgg atcaggcctt tgccgcagcc tcgatgatcg gcacgaactc ggcggcggtg
      721 aggctggcgc cgccgaccag cgcgccgtcg acattctcga cccccatcag ctcggcagcg
      781 ttcgagggct tgaccgagcc gccatagagg atgcgcacgc cctccgcttc ggggcccagc
      841 aggtcgcgca acttggcgcg gatcgcggcg tgcatctggg cgacatcgac gggcgtcggc
      901 gtgcggccgg tgccgatcgc ccagacgggc tcgtaagcga cgacgaggct ggcggcagtc
      961 gcctgcgtcg ggatcgagcc ctgaagttga ctttccacca cgtccactgc ccgacccgca
     1021 tcgcgctcgg cctcgatctc gccgacgcag acgatcgcga tcagccctgc cgcgatcacc
     1081 gcctccgcct tggcgcggac ttcttcgtcg ctttcgcgct ggtcagtgcg ccgctcgctg
     1141 tgacccacga tcgccagctt ggcgcccgct tccttcagca tcgccgcgga cacgcagcca
     1201 gtatgcgccc ccttgtcttt atggtgcgaa tcctgcgcgc cgatgatgag gtccccgcgc
     1261 gcggcagcag cggcgatcag cgtgaaaggc gggcatagcg cgacatcgac ctcagggtga
     1321 gcgcgcgccg cttcggcaat cgcgtccagc tcgccaagct gggacagcga cccgtgcatc
     1381 ttccaattgc ctgctaccag cctgcgccgc gccatcaccg ctcccctaga taaaccggcg
     1441 cgcagctaga ggatcgcctg ccccaagcgc aagcttgtcg gccccgccgc tcggccctaa
     1501 agcaccgctt tccctgattg ttctggatac ccgatgctcg atactttccg ccgcctgtcc
     1561 aggtccaaac tcggcgcggc cctgtttgcc ctgttcgtcg ccgcggtggc gctcggcttt
     1621 gccgccgcgg acattcgcgg cctcggcatc aatggccggg tgggcagcga cacggtcgcg
     1681 aaggttggcg gtgagactat cggctatgcc gagctgcgcc agcgcgtcca gcgcgcgttc
     1741 gacaatgcgc ggcaggagca gaccgggctc accatccagg aattcgtacg gcaaggcggc
     1801 gtcgatcagg tgctccagca gatgaccgac gcaatcgcgc tggaacaatt cgcaaaagaa
     1861 cagggcttcg gcatcagccg caagatggaa gacgcgcaga tcgcatcggc gccggtcttt
     1921 cacggcctga acggcgcatt cgaccagtcg gcattcgaag cttttctggc ccgccagcgt
     1981 gtgacagaaa agcagctgcg cgccgacctt gcgcgcgatc tctatctgaa cctggtcctg
     2041 gtgcccgcga cgggcggagc gcgggccccg gcctcgctgt cgtcgctcta tgcctcgatg
     2101 ctgctggagc aacgcaccgg ccgcttgcag ctggtgcccg ccgctgcgat gaaagctgcg
     2161 ccgcccaacg acgcggacat cgccgcttac taccagcgca accttcgccg ctacacgatg
     2221 ccggagcggc gggtggtgcg ctatgcgctg ctgaaccgca cggccttcga aggcgccgcc
     2281 cagccgagcg aggccgaaat ccagcaagcc tataatgcga aaaaggccga ttatgcgcct
     2341 cgggagacgc gcacgatcag ccaggtcatc ctgccgagcg aggccgcagc gcgcgatctg
//
LOCUS       DASQVK010000099         3622 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_164248,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000099 DASQVK010000000
VERSION     DASQVK010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3622
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164248"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..589
                     /locus_tag="VE567_02095"
     CDS             <1..589
                     /locus_tag="VE567_02095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47664.1"
                     /translation="PPEPAVVLPRRSPAARPKTASWVAIGASALLLIGGGLFWLNTAN
                     TSIEQHQTAELTFVGSQTCRGCHPSEANLWKDSQHRHAMDHATDASVRGDFDDAAFEY
                     AGMRSRFFRKDRKFLVETDGPDGKLATFEVKYTFGIEPLQQYLIEFPDGRIQALSIAW
                     DARPKHQGGQRWFHLYPDGAVTSSDPLHWTKLNQN"
     gene            596..1459
                     /locus_tag="VE567_02100"
     CDS             596..1459
                     /locus_tag="VE567_02100"
                     /inference="COORDINATES: protein motif:HMM:NF021235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HYZ47665.1"
                     /translation="MCAECHSTGVHKNYDAAADHFATSFAEISVGCEACHGAGSNHVA
                     WAKAGTRGDPGKGLLVNFNERTGVSWTADPSNSLPRRSSPPALLRKEVETCGLCHARR
                     GQLAQDWKPGQWLSQTHRVSLLDRRLSHADGQMRDNEETYNYAPFKLSRMFAAGVTCS
                     DCHDPHSVTLKASADAVCGQCHIRATYEAIAHRQHADTEMSCASCHMPVRSYIVVDRR
                     HDHSFRVPRPDLSVQLGTPNACNDCHADKPAAWAAEKITVWFGPQRRGYQTYGVPSGQ
                     PGRSGRTRKRC"
     gene            1573..2343
                     /locus_tag="VE567_02105"
     CDS             1573..2343
                     /locus_tag="VE567_02105"
                     /inference="COORDINATES: protein motif:HMM:NF024821.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYZ47666.1"
                     /translation="MVRIGALDTLEALPAEQLWPLASAHLSDPVRGVRIRASELLASV
                     PPARRPAADNEAFSRAAAEFVAAQRLNADRPDARTTLGNFYARQGNAAEAEAEYRAAI
                     RLDPSFSAAAVNLSDLYRQLGRDGEGERILRDALSRSERDASLHYALGLVVVRQKRPD
                     AALDALRRAATLDPDQARYAYVYAAGLHSAGRRDDALAVLKESLRRHPNDRGALSAAI
                     TFSREKGDAAAALEYAERLSRLMPDNRELPQIVKQLRQ"
     gene            complement(2549..2806)
                     /locus_tag="VE567_02110"
     CDS             complement(2549..2806)
                     /locus_tag="VE567_02110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47667.1"
                     /translation="MAEAIDGPALHEVEIALSGVVPEIGAVAADEDRLRARSDVHQRV
                     KRMDSIGHVDLLWAVLGVKRAGRNARRPHFMGAAFSKSWLN"
     gene            2690..>3622
                     /locus_tag="VE567_02115"
     CDS             2690..>3622
                     /locus_tag="VE567_02115"
                     /inference="COORDINATES: protein motif:HMM:NF002985.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYZ47668.1"
                     /translation="MTARPQAVFVRGDGAYLWDHAGKRYLDFVQGWAVNCLGHSPPAV
                     AEALAAQAKKLLTPSPAFYNDASLKLANALVENSCFDRVFFANSGAEANEGAIKLARK
                     YGAKHKGGAFEIITFEGGFHGRTLATMSASGKKAFEPLFEPKVPGFRKARLNDLASVK
                     ALISDNTVAVMLEPIQGEAGVWPATDEFLQALRALTQEHGLLLIVDEIQTGMGRTGKL
                     FHYEHAGIAPDIMTLGKGIGGGVPLAALLATSHAACFEHGDQGGTFNGNPVMCAAGLA
                     VFAEVSKPDFLKSVTDTGLFLESELQKVSARHGLG"
BASE COUNT          676 a         1186 c         1121 g          639 t
ORIGIN      
        1 accgcctgag ccggccgtcg tccttccacg acggtctcca gccgcgaggc cgaaaaccgc
       61 cagctgggtt gcaatcggtg ccagcgcgct gcttctgatc gggggcgggc tgttctggtt
      121 gaatacagcg aacacctcga ttgagcaaca tcagaccgcc gaactgacgt ttgtcggtag
      181 ccaaacctgc aggggctgcc atccatccga agccaacttg tggaaggatt cgcagcaccg
      241 gcacgcgatg gatcacgcca ccgatgcgtc agtccgcggc gacttcgacg atgctgcatt
      301 tgaatatgcg ggcatgcgct cgcgcttctt ccgcaaggat cggaagtttc tggtcgagac
      361 agacggaccg gacggcaagc tcgcgacatt cgaggtcaag tacacgttcg gcatcgaacc
      421 cctgcagcaa tatctgatcg aattcccgga cggccgaatt caggccctgt ccattgcctg
      481 ggacgcacga cccaagcacc aaggcggtca gcgctggttt cacctttatc cggatggcgc
      541 cgtcaccagc agcgatccct tgcactggac gaagctcaac cagaactaga acttcatgtg
      601 cgcggaatgc cattcgaccg gcgtgcacaa gaactatgat gcggctgcgg atcactttgc
      661 gaccagcttt gccgaaatta gcgttggctg cgaggcttgc cacggagcag gttcgaacca
      721 tgtcgcgtgg gcgaaagccg gaacgcgggg cgatcccggc aagggccttc tggtgaattt
      781 caacgaacgc accggagtct cctggaccgc tgacccttcg aattcgcttc cgaggcggag
      841 ctcgccgcca gcactgctgc gcaaggaggt cgagacctgc ggcctctgtc acgcacggcg
      901 cgggcagctt gcccaagact ggaaaccggg ccagtggctc tcgcagacgc accgggtctc
      961 gctgctcgac cggcggctct cccacgcaga cggccagatg cgtgacaatg aggagaccta
     1021 taactacgcg cctttcaaat tgagcaggat gttcgcggcg ggggtgacct gcagcgattg
     1081 ccacgatccg cacagcgtga cgctcaaggc ctctgccgat gccgtctgcg ggcaatgcca
     1141 tatccgggcg acatacgaag caattgcgca tcgccagcat gccgacaccg aaatgagctg
     1201 cgcgtcctgc catatgcctg ttcgcagcta cattgtggtc gaccggcggc atgatcacag
     1261 ttttcgtgtg ccaaggcccg atctgtcggt gcagcttggc actcccaatg cctgcaacga
     1321 ctgtcatgcc gacaagcccg ccgcgtgggc agcagaaaag atcacggtgt ggttcggccc
     1381 gcaaaggcgc gggtaccaga cttatggggt gccttccggg cagcctggac ggagcggccg
     1441 gacgcgcaag cgctgttgac agccctggcc tcggcccctg acgttcctgc gctcgcgcgc
     1501 gccagcgccc tcgccgagct tcccgcaccg gacattgatc tggcgcgacg cggccttgcc
     1561 gatccagatc ctatggtccg gatcggcgcg cttgacacgc tcgaagcttt gccagcggaa
     1621 cagctctggc cgcttgcttc ggcgcacctg tctgatccgg ttcgcggcgt tcgcattcgt
     1681 gcctccgaac ttctggcttc cgtaccgccg gcgagacggc ctgcggctga caacgaggct
     1741 ttctcgcgtg ccgcagcgga attcgtggcc gcgcaaagac tgaacgccga ccggcccgac
     1801 gcgcgcacaa cgctcggaaa tttctacgca cgacagggca atgccgccga ggcggaggcg
     1861 gaatatcgcg ccgcgattcg cctggatcct tccttttcag ccgccgcggt caatctgtcc
     1921 gatctttatc ggcagcttgg acgagatggc gaaggcgagc gcatccttcg cgatgctctg
     1981 tccagatcgg aacgcgacgc ctcgctccat tatgcgctcg gtcttgttgt cgtgcggcag
     2041 aagcgaccgg atgccgcgct cgatgcattg cgccgcgcgg cgacgctgga cccggaccag
     2101 gcacgctacg cgtatgtcta tgccgcgggg ctgcattccg ccggtcgtcg cgacgatgcg
     2161 cttgcagtcc tgaaggagag cttgcgccgg catcccaacg accggggagc actctcagcg
     2221 gctatcacgt tcagtcgaga aaaaggggac gccgctgcgg cattggaata tgccgagcgc
     2281 ctttcgcgcc tgatgccgga caatcgcgag ctcccacaga tcgtcaagca gctcaggcaa
     2341 tagatactcg cgccgaccca acgctgcggc cgacgccgat tggcaagccg gacggcgaag
     2401 aggcgccccg cccgacttga cagttcctgc cactgggctg tatgggcttg cgccatgaag
     2461 ctaaaccgga ccatccgccg cgccactttt cgtcgtcgca cccgcgacga tgatgggttg
     2521 cgccatgtcc gatgccagcg ctgattaact agttcagcca ggatttcgag aaggccgcac
     2581 ccataaagtg cggccttctc gcgtttcggc ctgccctttt cacccccaaa accgcccaga
     2641 ggagatcgac atgaccaatg ctatccatcc gtttgacgcg ctgatggaca tcactgcgcg
     2701 cccgcaagcg gtcttcgtcc gcggcgacgg cgcctatctc tgggaccacg ccggaaagcg
     2761 ctatctcgac ttcgtgcagg gctgggccgt caattgcctc ggccattcgc cgccggcggt
     2821 ggccgaggcg ctggccgcgc aggcgaaaaa actgctgacg ccgagcccgg cgttctacaa
     2881 cgatgccagc ctgaagcttg caaacgcgtt ggtcgagaac agctgcttcg accgggtgtt
     2941 cttcgccaat tccggcgcgg aagccaacga aggcgcgatc aagctcgcac gcaaatacgg
     3001 cgcaaaacac aaaggcggcg cgttcgagat catcaccttc gagggcggct ttcacggccg
     3061 cacgctcgcg accatgtcgg catcgggcaa gaaggcgttc gagccgctgt tcgagcccaa
     3121 agtgccgggc ttccgcaagg cgcggctcaa cgatctcgcg tcggtgaagg cgctgatctc
     3181 ggacaatacg gttgcggtga tgctggaacc gatccagggc gaggccggcg tctggcccgc
     3241 gaccgatgag tttctgcagg cgctgcgggc gctgacccag gagcacggcc tgctcctgat
     3301 cgtcgacgag atccagaccg gcatgggccg caccggaaaa ctcttccact atgagcacgc
     3361 cggcatcgcg cccgacatca tgacgctcgg caagggcatc ggcggcggcg tgccactggc
     3421 cgccctgctc gcgacctcgc acgccgcatg cttcgagcat ggtgaccagg gcggcacgtt
     3481 caacggcaat ccggtcatgt gcgcggccgg gctcgccgtg ttcgccgagg tcagcaagcc
     3541 ggacttcttg aagtcagtca ccgacaccgg cctatttctc gaaagcgagt tgcagaaggt
     3601 ctcggcccgg catgggctcg gc
//
LOCUS       DASQVK010000100         2525 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_37558, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000100 DASQVK010000000
VERSION     DASQVK010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2525
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37558"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1357
                     /locus_tag="VE567_02120"
     CDS             <1..1357
                     /locus_tag="VE567_02120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47669.1"
                     /translation="PQHVREAELMLALARPLQARALAWAVAASLAVFALARLFAPAPA
                     PETPIRQSSAGAPTYASALAQIDRQLVGLKQLAGSRPDDWLMQERVAHQLMGRARLTG
                     SFAAYAAAQRVLDSAFASATPGAGPHLTQAALALSLHRLGLAERMLDAVDRYAVAPEA
                     EVRAGATAMRGDIAFYRGHYRAALEAYRAMSAAGDRPDQRLAIFWAKTGRPDDAIAAI
                     KRIERGGLVPGQALAQLALLRGTVALQKGDWDAADLAFSEAEKRFPGWWLAEAHRAQM
                     LALRGRHAEALRAFEALAARSDDPALRDAIAGLYRARGDYARTELWAGRAAQGWAERL
                     RLLPEAAIGHAVEHELAFGSPARALDLARRDFALRPHGATAIALGWALIANNRPAEAL
                     KLIGAVNRSIWVSAEQHLVAARAHALLGQSDAAQAENDAALAINPHALDPNAALLWYG
                     H"
     gene            1354..>2525
                     /locus_tag="VE567_02125"
     CDS             1354..>2525
                     /locus_tag="VE567_02125"
                     /inference="COORDINATES: protein motif:HMM:NF025167.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HupE/UreJ family protein"
                     /protein_id="HYZ47670.1"
                     /translation="MRALLAWLALLLIAAPAAAHLTPNSEIRLDFGAQAVEAEVIIPL
                     AELSFALHRQLPGTLGPVRDADVRRYIAERFAVPGWRVRLAGLDVVLEAGPPDVRARF
                     ALTPPPGASPRRFDLVYRAVIDRVPSHIVLVVARNDFAGGHLSERPRLLGGLQSGATL
                     LRIDRGPGSDWRGFVSAIGLGMHHIAEGHDHLLFLIALLLPAPVLAAGKRWSGYGGLR
                     HMLHGLVRVVTAFTIGHSLTLIGGAFFGWRLPAQPVEIGIALSILVSALHAWRPLFAG
                     REALIAAGFGLIHGLAFATLIGRFGLEPLQKAKSILGFNLGIELVQLIVVAVVTPALL
                     LLARTRFYPAARTAGAALAGTAAIAWIIERSFGLANPVGRAIDTALGQAPWLLAALT"
BASE COUNT          311 a          932 c          854 g          428 t
ORIGIN      
        1 gcctcaacat gtgcgcgaag ccgagctgat gctggcgctc gctcgcccgc ttcaggcgcg
       61 agcgctggct tgggcggttg cggcgagtct ggccgtgttt gccctggctc gcttgttcgc
      121 acccgcgccg gcgcccgaga cgccgatccg gcagagtagc gcgggcgctc cgacttacgc
      181 gtccgcgctc gcgcagatcg accggcaact tgtcggcctg aaacagctcg ccggctcacg
      241 gcccgacgat tggctgatgc aggaacgcgt cgcccaccaa ctcatgggcc gcgcgcgtct
      301 gacagggtcg ttcgccgctt atgccgcggc gcagcgcgtg ctcgacagcg cctttgccag
      361 cgccacgccg ggcgcggggc cgcatctgac ccaggccgcg ctggcgctga gcctccatcg
      421 tcttgggctt gccgagcgca tgctggacgc ggtcgatcgc tatgccgtcg cgccggaggc
      481 agaggtgcgc gccggagcga cagcgatgcg gggcgatatc gccttttatc gcggccatta
      541 tcgcgccgcg ctggaggcct atcgcgcaat gagcgccgcg ggcgaccggc cggaccagcg
      601 gctcgccatt ttctgggcca agaccgggcg tcccgatgac gctattgccg ccatcaagcg
      661 catcgagcgc ggcggcctgg ttccgggcca ggcgcttgcc cagctcgcgc tgctgcgcgg
      721 cacggtcgca ctccagaaag gcgactggga cgcggccgac ttagcctttt ctgaagcgga
      781 aaagcgcttt cccggctggt ggctggccga ggcgcaccgg gcgcagatgc ttgccctgcg
      841 cggtcggcat gccgaggcgc tccgcgcatt cgaggcgctt gccgcccgca gtgacgatcc
      901 ggcgctgcgc gacgcgatcg ccggacttta ccgggcacgc ggagactatg cgcgcaccga
      961 gctttgggcc ggccgcgcgg cccagggctg ggcggagcgg ctgcggctgt tgcccgaagc
     1021 ggcgatcggc catgcggtcg agcacgagct cgctttcggc tcgcccgccc gcgcactgga
     1081 cctcgcccgc cgcgatttcg cgcttcgccc ccacggcgcg acggccattg cgctcggctg
     1141 ggcactcatc gcgaacaacc gccccgccga ggcgctgaag ctgatcgggg cggtcaaccg
     1201 ctcgatctgg gtgtcggccg aacagcatct ggtcgccgct cgcgcccacg cgctgttggg
     1261 ccagagcgat gccgcccagg ccgagaacga cgccgcgctc gcgatcaacc cgcacgcgct
     1321 cgatccgaac gccgcgctgc tgtggtacgg ccattgagag cgctgctcgc ctggctcgcg
     1381 ctgctgctga tcgccgcgcc tgccgccgcg cacctgacgc ccaactccga aatccgcctc
     1441 gatttcggcg cacaggccgt cgaggcggaa gtcatcattc ctttggccga gttgagcttc
     1501 gcgctccacc gtcaactgcc cggcacgctt ggcccggtgc gcgatgccga cgttcgtcgc
     1561 tatatcgccg agcgcttcgc cgtgcccggc tggcgcgtgc ggctggcggg gcttgacgtg
     1621 gtattggaag ctggcccgcc cgacgttcgc gcccgcttcg cgctcacgcc gccgcccggc
     1681 gcatcaccgc ggcgcttcga tctcgtctat cgcgcggtga tcgaccgcgt gcccagccac
     1741 atcgtgctgg tggtcgcacg caacgacttt gccggcggcc atttgtccga gcggccgcgc
     1801 ctgctcggcg gcctgcagag cggcgcgacc ctgctccgca tcgatcgggg acccggcagc
     1861 gactggcgcg gcttcgtctc cgcgatcggg ctcggcatgc accacatcgc cgaagggcac
     1921 gatcatctgc tcttcctgat cgcactgctg ctgccggcgc cggtgctggc ggcgggcaaa
     1981 cgctggagcg gctatggcgg gctccggcac atgctgcacg gcctcgtccg ggtggtgacc
     2041 gccttcacga tcggccattc gctgaccctg atcggcggcg cgtttttcgg ctggcgactg
     2101 cccgcacagc cggtcgagat cggcatcgcc ctctccatcc tcgtctccgc gctgcacgcc
     2161 tggcggcctc ttttcgccgg gcgcgaggcc ctgatcgccg ctggcttcgg cctgatccac
     2221 ggccttgcct tcgcgacgct gatcggccgc ttcgggctcg aaccgttgca gaaggccaag
     2281 tcgatcctcg gcttcaatct cggcatcgag ctggtgcaat tgattgtcgt ggcggtcgtc
     2341 actcccgccc tattgctgct cgcacgtacc cgcttctatc ccgccgcccg caccgccggc
     2401 gccgcgctcg cgggcactgc cgcgatcgcg tggattatcg agcgctcatt tgggctcgca
     2461 aacccggtgg gtcgcgcgat cgacaccgcg ctcggccagg cgccttggct gctcgcggcg
     2521 ctcac
//
LOCUS       DASQVK010000101         3844 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_322543,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000101 DASQVK010000000
VERSION     DASQVK010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3844
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322543"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1039
                     /gene="nuoF"
                     /locus_tag="VE567_02130"
     CDS             <1..1039
                     /gene="nuoF"
                     /locus_tag="VE567_02130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007164315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HYZ47671.1"
                     /translation="ESEPGSCKDREIIRHDPHKLIEGALIAGFAMRARAAYIYIRGEY
                     IREAETLFAAVREAYDKGLLGKNASGSGYDFDVFVHRGAGAYICGEETAMLESLEGHK
                     GQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAAWFAAIGRPKNEGTKLFQI
                     SGHVNKPCVVEEAMSIPFRELIEKHCGGIRGGWDNLLAVIPGGSSVPLVPAAQIIDCP
                     MDFDALKDLKSGLGTAAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGTGWMWR
                     VMERLREGNAEIEEIDMLEEVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRIVE
                     KRGAAYAEAAE"
     gene            1118..1789
                     /locus_tag="VE567_02135"
     CDS             1118..1789
                     /locus_tag="VE567_02135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47672.1"
                     /translation="MGKRLIRVAVLSAAPFAIFPAAAKDTSPAQAGIEIGRCIVKADR
                     QSAISMLKRLPLTGGEMDWSSVSLGTAASCRNASSPPVTVTALRGGIAQELFKRDFVE
                     YGVQPQRSISDLARFDLPVEKNTMGVEEPTKTLFLTADCVARSNPSGAEMLIKTAPGS
                     QQEMKIFELLGPWLSSCQGANRMAYGKTELRSAIVQAAYHVSQRYWAGEMTYAGPAFR
                     PEGVR"
     gene            1885..>3844
                     /gene="nuoG"
                     /locus_tag="VE567_02140"
     CDS             1885..>3844
                     /gene="nuoG"
                     /locus_tag="VE567_02140"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009821724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_process: GO:0006120 - mitochondrial electron transport,
                     NADH to ubiquinone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoG"
                     /protein_id="HYZ47673.1"
                     /translation="MPKLTVDGIEVEVPQGATVLQACEAAGKEIPRFCYHERLAIAGN
                     CRMCLVEVKPGPPKPQASCALPAADKQEVRTDSLMVKKAREGVMEFLLINHPLDCPIC
                     DQGGECDLQDQAMAYGRGFSRFDENKRAVTDKYMGPIIKTSMNRCIQCTRCVRFAEQV
                     AGVEEIGAIGRGENMQITTYLEKTLTSELSGNVADLCPVGALLQKPYSFEARPWELKK
                     TPSIDVHDAVGSNVRLDSRGRQVMRVLPRINEDVNEEWLSDKSRHAIDGMVRRRLDRV
                     FVRRDGKLQPATWEDAFAEIAKHADGSMAAIAGDLVDCETMYAAKALLRAFGSELLEG
                     RQTGMDYDCSSLAAVNFNTTIPGIEEADAILLIGSNVRVEAPLVNTRIRKAVRRGAKV
                     FAIGPELDLTYKVEWLGNDLGLLGKLPKAVTEAFGGAARPAIIVGAGALKAGGLGAAL
                     ALIGPLNLVREGWNGFNVLHLAASRMGSLMLGYAQKGGIADVVAAKPKLTFLLGADEV
                     DFGRFDGSFKVYVGHHGDKGAHAADVILPAASYVEKHGTYVNLEGRVQMAEKAVFAPG
                     EAREDWKIFRALSDILGKPLPFDTFDQLRAAMVAEVPALGRAGEIAPFDWNPPALPTD
                     ASGPVGYPIADFYLTNAICRASPTMQRCS"
BASE COUNT          709 a         1220 c         1288 g          627 t
ORIGIN      
        1 cgagtcggag ccgggctcct gcaaggaccg cgagatcatc cgccacgatc cgcacaagct
       61 gatcgaaggt gcgctgatcg ccggcttcgc gatgcgggcg cgagcggcct atatctatat
      121 ccgcggcgaa tatatccgcg aggccgagac cctcttcgcc gcagtgcgcg aggcctatga
      181 caagggcctg ctgggcaaga acgccagcgg ctccggctat gacttcgacg tgttcgtcca
      241 caggggcgcc ggcgcctata tctgcggcga agaaacggcg atgctggaaa gcctggaagg
      301 ccataagggc cagccgcgcc tgaagccgcc tttcccggcc ggcgcgggcc tttatggctg
      361 cccgaccacc gtcaacaatg tcgaatcgat cgcggtggtg ccgaccatcc tgcggcgcgg
      421 cgcggcctgg ttcgccgcca tcggccgacc gaagaacgaa ggcaccaagc tcttccagat
      481 cagcggccat gtgaacaagc cctgcgtggt cgaggaagcg atgagcatcc cgttccgcga
      541 actgatcgag aagcattgcg gcggcatccg cggcggctgg gacaatctgc tcgcggtaat
      601 cccgggcggt tcgtccgtcc cgctggtgcc ggccgcgcag atcatcgact gcccgatgga
      661 tttcgacgcg ctcaaggacc tgaaatcggg cctcggcacg gcggcggtga tcgtgatgga
      721 caaatccacc gacgtcgtcc gcgcgatcag ccgcctcagc tacttctaca agcacgaatc
      781 ctgcggccag tgcacgccat gccgcgaagg caccggctgg atgtggcgcg tgatggagcg
      841 gctgcgcgaa ggcaatgccg agatcgaaga gatcgacatg ctggaggaag tcaccaagca
      901 ggtggaaggc cacacgatct gcgcactcgg cgacgccgcc gcctggccga tccagggtct
      961 gatccggcac ttccgcccgg aactggagcg ccggatcgtc gagaagcgcg gcgcagccta
     1021 cgcagaggcg gcggagtaaa gcagctcttc ccaaactcct gccgaccgcg catcatgcgc
     1081 agaggagcgc cttggcgctc cggcagagga gggtgacatg ggcaagcgtc tcattcgcgt
     1141 ggcagtgctg agcgctgcgc cgtttgcaat cttcccagcc gcggccaagg acacgagccc
     1201 ggcccaggcc ggcatcgaga tcgggcggtg catcgtgaag gcggatcgcc agtccgccat
     1261 ctccatgctg aagaggctgc cgctgaccgg cggcgaaatg gattggtcgt cggtatcgct
     1321 aggtacggcc gcaagctgcc gcaacgcgag ttcgccgcct gtgaccgtga cggcgctgcg
     1381 tgggggcatt gcgcaggagc tcttcaagcg tgatttcgtc gaatatggcg tgcagccgca
     1441 gcgatcgatt tccgatctcg ccaggttcga cctgccggtc gagaagaaca cgatgggtgt
     1501 cgaggagccg accaagacgt tgttcctgac cgccgactgc gtcgcgcgca gcaatccgag
     1561 cggggccgag atgctgatca aaacggcacc cggatcacag caggaaatga agattttcga
     1621 gttgctcggg ccgtggctat cctcctgcca aggcgcgaac cgcatggcct atggcaagac
     1681 cgagttgcgc agtgccatcg tccaggccgc ctatcatgtc tcccagcgct attgggcggg
     1741 cgaaatgacc tatgccggac cggccttccg acccgaaggc gtgcggtaga tagccgcgtg
     1801 gagacggcga gcggaaaacc ctcttcctcc cttgcccccg ccatagcccc cgtctagagg
     1861 ctccgcccgg agcttaattt acgtatgcct aaactcaccg tcgacgggat cgaggtcgaa
     1921 gtcccccagg gtgcgaccgt ccttcaggcc tgcgaggccg cgggcaagga gattccgcgc
     1981 ttctgctatc acgaacgact tgcgattgca ggcaattgcc gcatgtgcct ggtcgaggtg
     2041 aagccggggc cccccaagcc gcaggcgagc tgcgcactgc ccgccgccga caagcaggaa
     2101 gtccgcaccg acagcctgat ggtcaagaag gcgcgcgaag gggtgatgga gttcctgctc
     2161 atcaaccacc cgctggactg cccgatctgc gatcagggcg gcgagtgcga cttgcaggac
     2221 caggcgatgg cctatggtcg cggcttttcc cgattcgacg agaacaagcg cgcggtcacc
     2281 gacaaatata tgggcccgat catcaagacc tcgatgaatc ggtgcatcca gtgcacgcgc
     2341 tgcgtgcgct ttgccgagca ggtggcgggc gtcgaggaga tcggcgcgat cggccgcggc
     2401 gagaacatgc agatcacgac ctatctcgaa aagacgctga ccagcgagct ttcgggcaat
     2461 gtcgcggacc tgtgcccggt cggcgccctg ctgcaaaagc cctacagctt cgaggcgcgg
     2521 ccgtgggaac tgaagaagac gccgtcgatc gacgtgcatg acgcggtggg cagcaatgtc
     2581 cgcctcgata gtcgcgggcg gcaggtgatg cgcgtactgc cgcgcatcaa cgaggacgtg
     2641 aacgaggagt ggctgtccga caagtcgcgc cacgcgatcg acggcatggt gcggcgcagg
     2701 ctcgaccgcg tgttcgtgcg ccgcgacggc aagctccagc ccgcgacctg ggaagatgcc
     2761 tttgccgaga tcgcgaagca cgccgatggt tcgatggcgg cgattgcggg cgatctggtc
     2821 gattgcgaga ccatgtatgc ggccaaggca ctcctacgcg cgttcggctc ggagctgctc
     2881 gaagggcggc agacgggcat ggactatgac tgttccagcc tcgcggccgt caatttcaac
     2941 acgacgatcc ccgggatcga ggaggcggac gcgatcctgc tgatcggatc gaacgtccgg
     3001 gtcgaggctc ccttggtcaa cacgcgcatc cgcaaggcag tgcggcgcgg cgccaaggtg
     3061 ttcgcgatcg ggccggagct cgacctgacc tacaaggtcg aatggctcgg caacgatctg
     3121 ggcctgcttg gcaagctgcc caaggccgtc accgaggcgt tcggcggggc cgcacggccg
     3181 gcgatcatcg tgggtgcggg tgcgctgaag gctggcgggc ttggtgccgc gctggcgcta
     3241 atcgggccgc tgaacctggt gcgcgagggc tggaacggct tcaacgttct gcatctggcg
     3301 gcaagccgga tgggctcgct gatgctcggc tatgcgcaaa agggcggcat tgccgatgtc
     3361 gtcgccgcca agccgaagct gacgttcctg ctcggcgcgg acgaagtgga tttcggcagg
     3421 ttcgacggca gcttcaaagt ctatgtcggc catcatggcg acaagggcgc gcatgccgcc
     3481 gacgtgatcc tgccggccgc ctcctatgtc gagaagcacg gcacttatgt gaatctcgaa
     3541 ggccgggtgc agatggccga aaaggccgtg ttcgcgcccg gcgaagcgcg tgaggactgg
     3601 aagatcttcc gcgcgctgtc agatatattg ggtaagccct tgcccttcga tacgttcgac
     3661 cagctccgcg ccgcgatggt cgccgaagtg cccgcgctcg gccgcgcagg cgaaatcgcg
     3721 cccttcgact ggaacccgcc ggcgctgccg accgacgcct ccggcccggt cggctatccg
     3781 atcgccgatt tctacctcac caacgccatt tgccgcgcca gcccgaccat gcagcgctgc
     3841 tcgg
//
LOCUS       DASQVK010000102         2394 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_322604,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000102 DASQVK010000000
VERSION     DASQVK010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2394)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2394)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2394
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322604"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..878)
                     /locus_tag="VE567_02145"
     CDS             complement(<1..878)
                     /locus_tag="VE567_02145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003041844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYZ47674.1"
                     /translation="MKQNFTVRQGALDGVEAFLGVAQHRSFRKAAAELGVTPSAISQA
                     VRALENRVGAALFIRTTRSVGLTEAGERFLSRAKPAFEELVAASEVARDLGQRPAGLL
                     RLSVPRAVVPILLEPLLASFCQAYPEVEVEIAASEELVDIAAAGFDAGIRLGQFIAPD
                     MIVVRLTPPFPLMVVGSPDYLRRRKRPERIDDLRQHACLRMRRSNGSIAPWSFVDGNK
                     AIEATVSGPLVAHDYPTLLGAAIQGIGLAQVPGPLAKAAIAEGRLQALLTPFAVTTPG
                     VFLYHPDRRQVLPKLRA"
     gene            955..1785
                     /locus_tag="VE567_02150"
     CDS             955..1785
                     /locus_tag="VE567_02150"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYZ47675.1"
                     /translation="MSDVLDDVRDHYRATGLTERLTSALSVFGPADRQLTPQQLAGLD
                     QFHTRGLAATAELAELAGITAGMSVLDVGSGVGGPARFLAATCGCHVTGVDLSAPFVD
                     AARYLTERTGQSGQVSFQTASALALPFDARTFDAVLLQHVAMNISDRALLYGEIRRVL
                     KPGGRFATFDVVSNDGEPHYPVPWARTAATSFLLTAAATRASVEKAGFRTLAWQDGTD
                     AAKAWIAQLRASGPPPSPNLGVVMGPDFAQFSANLGRNLMEGRVGILAAVFEAVSINS
                     "
     gene            1886..>2394
                     /locus_tag="VE567_02155"
     CDS             1886..>2394
                     /locus_tag="VE567_02155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47676.1"
                     /translation="MSPSTIFQIHLVLGYVPWLLCFGAYVLPKLKSMDRVEAQRAIAT
                     LHSFRFFGLVFIVPGVVGPNLPADFASFAAYGDFATGVLAMLALLTIRVQPLFWLFVI
                     AFNLMGAGDIIVDYYHGNQVGLPALAGELGATYAIPIIYVPVLMITHLVAFYLLVRPE
                     TNKAARVLVG"
BASE COUNT          400 a          798 c          764 g          432 t
ORIGIN      
        1 gcgcgcagct tgggcaagac ctgccgtcta tcggggtgat agagaaaaac ccccggcgtg
       61 gtgacggcga agggtgtcag cagcgcttgc aatcttccct cggcaatcgc cgctttggcg
      121 agcgggccgg gcacctgtgc aagcccgatg ccctggatcg ccgctccgag gagcgtgggg
      181 tagtcgtggg cgacaagcgg cccggaaact gttgcctcga ttgccttgtt gccgtcgaca
      241 aaggaccagg gcgcgatcga tccgttcgac cggcgcatgc gcaggcaggc gtgctgacgc
      301 agatcatcga tgcgctccgg ccgcttccgc ctgcgcagat aatcggggct gccgacgacc
      361 atgagcggga acgggggcgt cagccggaca acgatcatgt ctggcgcgat gaactggccc
      421 agacggatgc cggcgtcaaa ccctgccgcc gcgatgtcga ccagctcctc gctcgcggcg
      481 atctccactt caacctcggg ataggcctgg cagaacgacg ctaacagggg ctccagcagg
      541 atcggcacca cggcccgcgg cactgacagg cgcaaaagtc cggccggccg ttgccccagg
      601 tcacgcgcga cttcgctggc ggcgacgagt tcctcgaagg ccggtttcgc acgcgaaagg
      661 aaccgctcgc cggcttcggt caggccgacg ctgcgcgtgg tgcggatgaa cagtgccgcg
      721 ccgacgcggt tctcgagcgc gcgcaccgcc tggctgatcg ccgatggagt caccccgagt
      781 tccgcagccg ctttgcggaa actgcggtgc tgagcaacac ccaggaacgc ctccacgccg
      841 tccagcgcac cctgcctgac tgtgaagttc tgcttcatac cctgccaaca ttatcgcgga
      901 tagtcgcgcg caggaagcgc tcgtacatcc ccatggcaaa tcaggaggct tgcgatgagc
      961 gatgtactcg atgacgtgcg cgaccattat cgggcgaccg gcctgaccga gcggctgacg
     1021 agcgcgcttt ctgtcttcgg tcctgcggat cggcaactta cgccgcagca gctggccggg
     1081 ctcgaccagt ttcacacccg cggcctggct gcgaccgccg agcttgccga gttggccggg
     1141 atcaccgccg gcatgtcggt tctggacgtc ggctcaggcg tcggcgggcc ggcgcgcttt
     1201 ctggccgcga cctgcggctg ccacgttacg ggagtcgacc tcagcgcacc attcgtcgac
     1261 gccgcgcgct atctgaccga gcggacggga cagagcgggc aggtatcgtt ccagaccgcc
     1321 agcgcgctgg cgctcccatt cgatgccaga actttcgatg ccgtgctgct gcagcatgtg
     1381 gcgatgaaca tctccgaccg ggcgcttctc tacggcgaaa tccggcgcgt gctgaagccc
     1441 ggcggcaggt tcgcgacctt cgacgtcgtc tcgaacgacg gcgagccgca ctatcccgtc
     1501 ccctgggcgc gcacggcggc gacgagcttc cttctcacgg ccgcggcgac gcgcgcgagc
     1561 gtcgaaaagg ccggcttccg cacgctcgca tggcaagacg gcacggacgc cgccaaggcc
     1621 tggatcgccc agcttcgcgc gtcgggtccg ccgccttcgc caaatctcgg cgtggtgatg
     1681 gggccggact tcgcgcagtt ctctgccaac ttgggacgga atctcatgga aggccgggtc
     1741 ggcatcctgg ccgcggtgtt cgaagccgtg tcgatcaaca gctgagacga tgccgcaatg
     1801 gcggacatcg gcctatcggc gaaagacatg cgccaagctg atcgaaaggg cgcgccgcgt
     1861 cggtgagcac ctgataggag gtcaaatgtc accttcaacc atcttccaga tccatcttgt
     1921 tttaggctat gtcccatggc tgctctgctt cggcgcatac gtcctgccca agctcaagtc
     1981 gatggaccgg gtcgaagcgc aacgcgccat cgcgacccta catagcttcc gcttcttcgg
     2041 gctggtcttc attgttccgg gtgtcgtcgg ccccaatctg ccggctgact ttgccagctt
     2101 cgccgcctac ggcgatttcg cgaccggagt gctggccatg ctggcgcttc tcacaataag
     2161 agtacagccg ctcttttggc tgttcgtcat cgccttcaat ctcatggggg cgggcgacat
     2221 catcgtcgac tattatcacg gcaaccaggt cggtcttccc gcgctcgccg gggagttggg
     2281 cgccacgtac gcaatcccga tcatctacgt gcccgtgctg atgatcacgc acctcgtcgc
     2341 gttttacttg ctcgtgcgtc ctgagaccaa caaagcggct cgggtcctcg tcgg
//
LOCUS       DASQVK010000103         3675 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_69343, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000103 DASQVK010000000
VERSION     DASQVK010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3675
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69343"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..959
                     /locus_tag="VE567_02160"
     CDS             <1..959
                     /locus_tag="VE567_02160"
                     /inference="COORDINATES: protein motif:HMM:NF015149.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006011 - UDP-glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cellulose biosynthesis cyclic di-GMP-binding
                     regulatory protein BcsB"
                     /protein_id="HYZ47677.1"
                     /translation="PVHDAGTAIPLYTVFGANDFQMFFDARPLSRGECGAIPQDIHMS
                     VDPDSTLDFTSAYHFARLPNLAFFVSAGYPFTRFADLAETAVVLPDHPSDIELSAYLN
                     LMGHLGSITFQPVNKVTVVRASHVDAAGDKDILLIGTMGHVGQAASLLSQSPYSVENG
                     TLRVAMSNALPDIWHLAQSTQADTDRARLAAVLTTPLGDGAAAMIGAESPLHEQRSVV
                     AVLAGAPQGLVAMAAALRDEQMVPHIQGDLALLNGGTISAYRVGGSYTVGHLPIWLWP
                     EWLLQDRPFSTAVLLLGATMLVAFSLYRLVRGKAHRRIAQSR"
     gene            974..>3675
                     /locus_tag="VE567_02165"
     CDS             974..>3675
                     /locus_tag="VE567_02165"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYZ47678.1"
                     /translation="MKISYLALAAGLASVGSVAHATTAAAPGSINEVLLEQANYWRAQ
                     NQLDKAAEALSRLLLIDPANADALALQAEVLAARGDRTGAQKSLAALKALQPATPRVS
                     EVEQTVRAGALDPSALNDARQLAQAGRGGEAVNAYRRLFQGDKPPRSLAQEYYETLAG
                     TEHWDEARQGLEALVSSDPQNLQIQLGYARTLTYREATRQQGIARLAALTKHPEIASA
                     ADAAWRQALLWLGGNPANAPMLQDYLAAHPGDSGIEARLADVTNPAKTPADVASAKRA
                     DGFAALNANRVAEAEKAFLGALDQKADDADALGGLGLVRLRQHKTDEAKQLLTQAIAA
                     DPTHRSRWEKALEGASVGEDYAQARTLIARGDLGAADHQLRLIIARGGDVTGAQEMLA
                     NVAQRRGDLPAAEAAYRAVLSARPGDADAMVGLAEVLRKRGHEDEANTLLERAQAAGK
                     TSVAGRMRADALRQQAAQAQSAAEKVPLLRAAVAAAPGDPWISLDLARALTAAGRAAE
                     ARAVMAGVTSGSAGVDALRAAALFATEDNQPELAASLVARLPAAARTPDMQALLGQAH
                     LQNDIRAALSTAAVNPSAGRGQLLALAAHPDPDGSHGVAIAKAFLQVQNPPAAREALA
                     TALAATPSPTAAQRIAYSGILLQAGDERGAQMMIASVADRHGLTPQQVDALNKIRAGA
                     AVRQADALNTQGRQADAYDVLAPALARDPENPVLVMALARLYMGAENPHKAVALNKAL
                     LARDPSNLDVRRAALDAAIQMHDWAQARQLVQDAMVIAPDDPRTWLMAGRLHHALGEG
                     RTALADLKRARDLRQQQLGGDQMAQEQEHAARGALAMNVTYAQSSIGSDAEPAPTGNP
                     FRQSGTSVIDDVSGSPSGLSPSDPVSADIAREMAGIHEELAPSLT"
BASE COUNT          616 a         1260 c         1248 g          551 t
ORIGIN      
        1 agccagtcca tgatgcgggc acagccattc cgctctacac cgtgttcggc gcgaacgact
       61 tccagatgtt ctttgacgcg cggccgctca gccggggcga gtgtggcgcg atcccgcagg
      121 acatccacat gtcggtcgat ccggactcga cgcttgattt cacctccgcc taccacttcg
      181 cgcggctgcc gaacctcgcc ttcttcgtca gtgccggcta cccgttcacc cgtttcgccg
      241 acctagcgga aaccgcggtg gtcctgcccg accatcccag cgacatcgaa ctcagcgcct
      301 atctgaatct gatgggccac ctcggctcca tcaccttcca gccggtcaac aaggtgacgg
      361 tggtccgcgc cagccatgtc gatgctgctg gggacaagga cattctcctg atcggcacga
      421 tgggccacgt cgggcaggct gcgtcgctgc tgagccaaag cccatacagc gtggaaaacg
      481 gcacgctgcg ggtcgccatg tccaacgctc tgcccgatat ctggcatctg gcccagtcca
      541 cccaggccga caccgaccgg gccaggctcg cggccgtgct gaccacgccg ctcggcgatg
      601 gtgccgccgc catgatcggt gccgagtcgc cgctgcacga gcagcggtcg gttgtcgcgg
      661 tgcttgcggg cgcgccgcag gggctcgtcg cgatggccgc ggcgctgcgc gacgagcaga
      721 tggtgccgca tatccagggc gacctggcgc tgctcaacgg cggcacgatc tcggcctacc
      781 gcgtcggcgg tagctatacg gtcggacatc tgccgatctg gctctggccc gaatggctgt
      841 tgcaggaccg acctttctcg acggccgtgc tgctgctggg cgccaccatg ctggttgcat
      901 tcagtctgta tcgcctggtg cgcgggaagg cgcaccggcg tatcgcacag tcccgttagc
      961 tggatcaccg ttcatgaaga tctcctatct ggccctggcc gcaggacttg cgagcgtagg
     1021 cagcgttgcg cacgctacaa cggcggctgc gccgggctcc atcaacgagg ttctgctgga
     1081 acaggcgaac tactggcgag cacagaacca gttggacaag gccgcggaag ccctgtcgcg
     1141 cctgttgctg attgatccag cgaacgccga tgccctggcg ctgcaggctg aagtgctggc
     1201 ggcgcgaggg gatcggaccg gcgcgcagaa gagtctcgcc gcgctcaagg cgctgcagcc
     1261 tgcgacccca cgcgtatccg aggtcgagca aacggtccgc gccggtgccc ttgaccccag
     1321 cgcgctgaat gatgcccggc aacttgctca ggcgggcagg gggggcgagg cggtcaacgc
     1381 gtacaggcgc ttgttccagg gcgacaagcc gccgcgctcc ctggcgcagg agtactacga
     1441 aacactcgcc ggaaccgaac actgggacga agcgcgccag gggctggaag cgctggtgag
     1501 ttccgacccg caaaacctgc agatccagtt gggctacgcc cgcacgctga cctatcgcga
     1561 ggcgacccgg cagcagggca tcgcgcgcct tgccgcgctg accaaacatc ccgagatcgc
     1621 ctccgcggcg gatgcggcct ggcgtcaggc gctgctctgg ctggggggca accccgccaa
     1681 tgcgccgatg ctgcaggatt atctcgccgc ccaccccggt gattccggca tcgaggcgcg
     1741 gctggcggac gtcacaaacc cagcgaagac gcccgccgac gtggcatcgg ccaagcgcgc
     1801 ggacggtttc gccgcactga acgccaatcg cgtggccgaa gccgagaagg cattcctggg
     1861 agcgcttgat cagaaggccg acgacgctga tgcactcggc ggactcgggt tggtgcgcct
     1921 gaggcagcac aagaccgacg aagcgaagca gttgctcacc caggcgatcg cggccgatcc
     1981 gacgcaccgg tcgcgctggg aaaaggcgct cgagggcgcg agcgtcggcg aggactacgc
     2041 ccaggcgcgc accctgatcg cgcgcggtga tctgggcgcg gcggaccacc agttgcgcct
     2101 gatcatcgcc cgcggcggcg atgtgaccgg cgcgcaggag atgctggcca atgtagcaca
     2161 gcggcggggc gacctgcccg cggccgaggc cgcataccgc gcggtgctct ctgcccggcc
     2221 cggcgatgcc gacgcaatgg tcggcctcgc cgaggtgctg cgcaagcgcg ggcacgagga
     2281 tgaggccaac accctgctgg aacgcgcgca ggccgccggg aagaccagtg tcgccggccg
     2341 catgcgcgcc gatgcgttgc gtcaacaggc agcccaggcg cagtctgccg cggaaaaagt
     2401 cccactgctg cgcgctgccg tcgcggcggc ccccggtgat ccgtggatca gcctcgatct
     2461 cgcacgggca ctgacggcag ccgggcgggc tgccgaagcg cgcgccgtca tggcgggcgt
     2521 gaccagcggc agtgccggtg tcgacgccct tcgcgccgcg gcgctgttcg ccaccgagga
     2581 taaccagccc gagcttgccg ccagcctggt tgcgcggcta ccggccgccg cccggacgcc
     2641 cgacatgcag gcattgctcg ggcaggcgca tttacagaac gatatccgcg ccgccctgag
     2701 cactgctgcc gtcaacccgt cggcgggacg tggccagttg ctggctctcg ccgcccaccc
     2761 cgatccggat ggtagccacg gcgtcgcaat cgcgaaggct ttcctacaag ttcagaaccc
     2821 tccggccgcg cgggaagcgc tggcgaccgc cctggccgcg acgccctcac cgaccgccgc
     2881 gcagcgcatt gcgtactccg gcattctgct gcaggccggg gatgaacgcg gcgcgcaaat
     2941 gatgattgct tccgtcgccg accggcatgg actgacaccg cagcaggtgg acgcgctgaa
     3001 caagatccgc gccggagcgg ccgtacgcca ggccgatgcc ctcaataccc aggggcgaca
     3061 agcggatgcg tatgacgtgc tcgccccggc gttggcgcgc gatccggaga accccgtact
     3121 ggtgatggct ctggcacggc tgtacatggg cgcggagaac ccgcacaagg cggtcgcgct
     3181 caacaaagca ctgctggcgc gcgatcccag caacctggat gttcgccggg ctgccctgga
     3241 tgccgcgatt cagatgcatg actgggcgca ggcgcgtcag ctcgtgcagg atgccatggt
     3301 gattgcgccg gatgacccgc gcacttggct gatggcgggg cgtctgcacc atgcgctcgg
     3361 cgaaggccgc accgcgctcg ccgacctgaa gcgggcacgc gatctgcgcc agcagcaact
     3421 tggcggcgac cagatggcgc aggagcagga acatgctgcc cgcggcgcgc tggcgatgaa
     3481 tgtcacctat gcgcagagca gcatcgggag cgacgccgag ccggcgccga cgggaaatcc
     3541 gttccgccag tccggcacaa gtgtcattga tgatgtatct ggctcgccat cgggtctgtc
     3601 gccgagcgat ccggtttcgg ccgatattgc gcgggagatg gccgggatac atgaggaact
     3661 ggcgccaagc cttac
//
LOCUS       DASQVK010000104         2179 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_101481,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000104 DASQVK010000000
VERSION     DASQVK010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2179
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101481"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..169)
                     /locus_tag="VE567_02170"
                     /pseudo
     CDS             complement(1..169)
                     /locus_tag="VE567_02170"
                     /inference="COORDINATES: protein motif:HMM:NF014609.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
     gene            299..2052
                     /locus_tag="VE567_02175"
                     /pseudo
     CDS             299..2052
                     /locus_tag="VE567_02175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014001292.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS1634 family transposase"
BASE COUNT          351 a          748 c          729 g          351 t
ORIGIN      
        1 cccggcgctc gtcgccgctc agcgacagga gcaacgcggc gagcgcggcg ttcgcgctgc
       61 cggtggccgg atcctcccac gtgcccgaca gcggcgagaa catgcgcgcc cgcagccggt
      121 cggggccgtc aggcgcgtag agatggatcg acagacgccc tttaagcgga agtttttcct
      181 tggtgagtcg gaattaggag tcaggccaag cagatagctg atccgcggca cgagttgtac
      241 ccatgttgcc aggacgattc tggtttcggt ttcaggcgtt tcgtgattcg cttgacggat
      301 gtacatcgag accataccga atcgcggctc gccgcccgcg gtgctcctgc gcgagagcta
      361 ccgcgagggc gggaaagtca tgaagcgcac gctgctgaac ctgtcgcagt ggccgccggg
      421 gctggtcgag ggcttgcgga ccttgctcaa gggcggcgtg gcgatcggcg ccgaggggct
      481 ggccatccaa cgctcgctgc cgcacgggca cgccgccgcg gtcctcggga cgctgcgccg
      541 gattggactc gatcaggtgc tcgcgccgca gccgtcgcgg gtccgcgacc tggcggtcgc
      601 gctgatcgtc agccggatcc tccagccggc gtcgaagctg gccaccgcgc gcgatctcga
      661 tgccgcgacg gcgagttcca gcctggggca cctgctcggt ctcggcgccg tcgatcagag
      721 cgaactctat gccgcgctcg attggcgcgg ctgggcgccc gccagccggc gatcgaggcg
      781 agcttggcca agcgccatct ccgcgacggc accttggtgc tgtacgacgt cagctcgagc
      841 tatctcgagg ggcgttgctg cgaactcggc cagctcggct acagccgtga tggcaagcgc
      901 ggcaaactgc agatcgtcta tggcctgctc tgtgcgtccg atggctgtcc ggtcgcgatc
      961 gaagtgttcg acggcgacac cgctgatccg gcgaccctcg ccagccaagt caaaaagctc
     1021 aagcagcgtt tcgggctcag ccgggtggtg ctggtcggcg accgcggcat gatcaccagc
     1081 gcgcgcatcc gcgaggatct cgcgcccaac gggctcgact ggatcaccag cctgcgcgcg
     1141 ccggcgatcc gtgccctgct ggccgagggt gaggggctgc aactctcgct gttcgacccg
     1201 ccgcaggaaa tggctgagat cagcgcgccc gattatcccg gcgagcggct gatcgtctgc
     1261 cacaacccgt tgctggcggc cgaacgcgcg cggaaacgtg aggatctgct ggcggccacc
     1321 gaacaggatc tcgcgcgcct gcaggccggc ttcaagcggc gccgccgccc ggccggggcg
     1381 gccgcgatcg ggctggcgat cggcgcggtg ctcgaccggc acaagagggc caagcacctc
     1441 cagctcgaca tcaccgagca cggcttcacc ttccagcgcg atccggcgag cattgctgat
     1501 gaggcgcggc tcgacggctt ctacgtcgtc cgcacctcgg tgccggcggc gccgccgccc
     1561 gccggtctcg atgcggcggc cgcggtcggc gcctacaaga gcctggccca ggtcgaacgc
     1621 gcgttccgca gcctgaagac cgtcgacctg cagatccgtc cggtgcacca ctggctgggg
     1681 ccgcgcgtgc gcgcccatgt cttcgtgtgc atgctggcct attacgtcga atggcacatg
     1741 cgggcgcggc tcaagccatt gctattcgac gatgccgacc attcagccac cgaggccgag
     1801 cgcgcctcga tcgtggcccc ggctcgtccg tcgcgaagcg ccaccgccaa gcgggggcgg
     1861 aagcgaaccg ccgacggccg cctgccggcg cacagctttc agagcctgct ccgcgatctc
     1921 gccacctgtg cgctgaacca tgccaccctg gcggtcggca aggccggtcc cgtcgttctc
     1981 gtcacgcgcc ccacaccgct tcagacgcgt gccttcgaac acctcgggat caatccaaac
     2041 cgtacccagt aaactgacgc gcaggcgggc agagatcgtg ccgcctcaag gacttgcgcc
     2101 ttatcaaaag aaaaacctcc gcctaaaatc tgaacataac ggaatggtga gtctggcgtt
     2161 ttcatttgat aacagtgag
//
LOCUS       DASQVK010000105         2327 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_101506,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000105 DASQVK010000000
VERSION     DASQVK010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2327)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2327
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101506"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..732
                     /locus_tag="VE567_02180"
     CDS             <1..732
                     /locus_tag="VE567_02180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017499466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYZ47679.1"
                     /translation="TTGYEEAAAQGLVAGINAARFAAGAEPLILDRAESYIGVMIDDL
                     TLQGVTEPYRMLTARAEYRLRLRADNATERLTGLGERIGCVGPERAAHARRRRQALAA
                     IEALLARPTRARELEVVASDDGRARPLGEWLRFNGVERANLLAVEPRLGAMDSELLDI
                     AIDDARYAPYLERQEAEVRALRAAGRAPIPLDIDYAGIPGLSNEMVERLDAARPADLE
                     SAARIRGITPAALAVILAYTQKRAA"
     gene            729..1340
                     /gene="rsmG"
                     /locus_tag="VE567_02185"
     CDS             729..1340
                     /gene="rsmG"
                     /locus_tag="VE567_02185"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HYZ47680.1"
                     /translation="MTEEEARAWIAAHYGGDRLAMLERYVALLLAANTAQNLIGKASE
                     PNLWTRHILDSAQLERHAPGAANWLDVGSGAGLPGIVIAILTGRPTLLVEPRRKRVEF
                     LQGIARNLRLENVDIEQASIEKLSGQTFAGVTARAYAPLPEIFSSTIRLTNPSTIWVL
                     PKGRSAERELDDARRTWQGVFHVEQSLSDVDAKIIVATGVRPR"
     gene            1346..2128
                     /locus_tag="VE567_02190"
     CDS             1346..2128
                     /locus_tag="VE567_02190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006966449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYZ47681.1"
                     /translation="MICVGVANQKGGVGKTTTAINVATGLAAIGWRVLLIDLDPQGNA
                     STGLGITQSQRESNSYDLLTGQAELAECVVPTRIPRLDVVPATVDLSGAEIELVELDH
                     RTHRLRRALDSAPKARWDICLIDCPPSLGLLTINAMVAADSLLVPLQCEFFALEGLSQ
                     LLQTIERIRARFNPTLSILGVALTMYDRRNNLTEQVAQDVRTCLGEVVFDTVIPRNVR
                     LSEAPSHGVPALIYDHRCSGSEAYMALARELLGRLPDLKRAA"
     gene            2125..>2327
                     /locus_tag="VE567_02195"
     CDS             2125..>2327
                     /locus_tag="VE567_02195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partitioning protein ParB"
                     /protein_id="HYZ47682.1"
                     /translation="MTEPARKRPTGLGRGLSALLGEAVREEPVAAGEHSPGVRLVSVA
                     EIEPHPEQPRRHFDEDALDELARS"
BASE COUNT          389 a          797 c          751 g          390 t
ORIGIN      
        1 acgaccggct atgaggaagc cgccgcgcag gggctggtcg ccggcatcaa cgccgcgcgc
       61 ttcgccgccg gcgccgagcc gctgatcctc gaccgggccg aatcctatat cggcgtgatg
      121 atcgacgacc tgacgctgca gggcgtcacc gaaccttatc gaatgctgac cgcgcgcgcc
      181 gaatatcgcc tgcgcctgcg cgccgacaat gcgaccgaac ggctcaccgg acttggcgag
      241 aggatcggct gcgtcggccc cgagcgcgcg gcccacgctc gccgccgccg gcaggcgctt
      301 gcggcgatcg aagctctgct ggctcgcccg acgcgcgcgc gcgaacttga agtcgtggcg
      361 agcgatgacg gccgcgcccg gccactcggc gaatggctcc gcttcaacgg tgtcgaacgc
      421 gcgaaccttc tcgccgtgga gccccgcctt ggcgctatgg actccgagct gcttgacatc
      481 gcgatcgatg atgcccgtta cgcgccctat cttgaacggc aggaggccga ggtccgggcc
      541 ctccgcgccg ccgggcgagc gccgatcccg ctggatatcg actatgcggg gatccccggt
      601 ctttcgaatg aaatggtcga gcggctcgat gcggcgcgac ccgccgatct ggagagtgcg
      661 gctcgtattc gcggcatcac gcccgcggcg ctcgcggtga tcctggccta cacgcaaaag
      721 cgcgccgcgt gaccgaagag gaggcgcgtg cctggatcgc ggcgcattat ggcggagacc
      781 ggctcgcgat gctggagcgc tatgtcgcgc tgctgctcgc cgccaacacc gcgcagaacc
      841 tgatcggcaa ggcgagcgag ccgaacctct ggacgcgcca cattctcgat tcggcccagc
      901 tcgagcgcca tgcccccggc gcggcgaatt ggctggacgt cggctccggc gcaggactgc
      961 cgggtatcgt aatcgcgatt cttaccggcc ggccgacgct gcttgtcgag ccgcgccgca
     1021 agcgagtcga atttcttcag ggcatcgcgc gcaatctgcg tctcgagaat gtcgatattg
     1081 agcaggcctc gatcgagaaa ctcagcgggc aaaccttcgc cggcgtaacc gcgcgcgcct
     1141 atgcgccgct gcccgaaatc ttctcatcca caattcgact cacaaatccg tccaccattt
     1201 gggtgctccc aaagggccgg agcgccgaac gagagctgga tgatgcgcgc cgcacgtggc
     1261 aaggagtgtt ccacgtggaa caaagcctga gcgatgtcga tgcaaaaatc atcgtcgcga
     1321 cgggcgtccg gccgaggtga gcagcatgat ctgcgtaggc gtcgccaatc agaagggcgg
     1381 ggtggggaag accaccaccg cgatcaatgt cgccacgggc ctcgcggcaa tcggctggcg
     1441 cgtgctgctg atcgatctcg atccgcaggg caatgcctcc accggcttgg gcatcacgca
     1501 atcgcagcgc gagtcgaaca gctacgacct gctgaccggc caggccgaac ttgccgagtg
     1561 cgtggtgccg acgcgcattc cgcggctcga tgtcgtcccc gccacagtcg atctgtcggg
     1621 cgccgaaatc gagcttgtcg aactcgatca tcgcacgcac cggctccgcc gcgcgctcga
     1681 ttcggcgccg aaagcccgct gggatatttg cctgatcgat tgcccgccct cgctcgggct
     1741 gctcacgatc aacgcgatgg tcgcggcgga ttcgctgctg gtgccgctcc agtgcgaatt
     1801 cttcgcgctc gaaggcctta gccagctgtt gcagacgatc gagcgcattc gggcgcgctt
     1861 caacccgact ctctcgatcc tcggcgtcgc gctcacaatg tacgaccgcc ggaataacct
     1921 caccgaacag gtcgcgcagg atgtgcgcac ctgtctcggc gaggtcgtgt tcgacactgt
     1981 cattccccgc aacgtccgct tgtccgaagc gccaagccac ggcgtgccgg cgttgatcta
     2041 cgatcatcgc tgctccgggt ccgaagccta tatggctttg gcgcgcgagc tgcttggccg
     2101 cctgcccgat ctgaagagag ctgcatgacc gaacccgctc gcaaacgccc gaccggcctg
     2161 ggccgtggct tgtccgcctt gcttggcgaa gccgtgcgcg aggagcctgt tgcggccggc
     2221 gagcattcgc ccggcgtgcg cttggtgtcc gtggcggaga tcgagccgca ccccgaacag
     2281 ccgcgccgcc atttcgacga agatgcgctg gacgaactcg ctcgttc
//
LOCUS       DASQVK010000106         2661 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_101531,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000106 DASQVK010000000
VERSION     DASQVK010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2661
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101531"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..551)
                     /locus_tag="VE567_02200"
     CDS             complement(<1..551)
                     /locus_tag="VE567_02200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYZ47683.1"
                     /translation="MDAPSKENPTVAPPRAAAQHGPRPLPLFLDMVREQTEGDPVRRA
                     AVLAGLRAYQEAERLPRPPEMPPAARAGRAMLRDYGGSGPPAVFVPSLINPPFILDLS
                     EGNSLLGWLAGKGVRPLLVDWGDPADAEEEAELDIAGHVEQFLLPLLAELGEPVHLVG
                     YCLGGTMTLAAAMHAQLRSLTLIA"
     gene            550..1092
                     /gene="phaR"
                     /locus_tag="VE567_02205"
     CDS             550..1092
                     /gene="phaR"
                     /locus_tag="VE567_02205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017184428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoate synthesis repressor PhaR"
                     /protein_id="HYZ47684.1"
                     /translation="MAKNPRGESGTVIIKKYANRRLYNTESSSYITLDHLAAMVREGR
                     EFQVLDARSDEDITRGVLTQIIMEEEQRGQTMLPVNFLRQLISMYGDSMQSMVPQYLE
                     ASMEAFRRNQAQFQKAMEGAFGGGPFAEIARRNMEMFEAAASAFRPKQGMAEGGSKDD
                     EIATLKAQLFELQSKIEKLG"
     gene            complement(1095..2168)
                     /gene="dinB"
                     /locus_tag="VE567_02210"
     CDS             complement(1095..2168)
                     /gene="dinB"
                     /locus_tag="VE567_02210"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HYZ47685.1"
                     /translation="MTQPRKIIHIDMDAFYASVEQRDDPALRGLPVAVGSAKGRGVVA
                     AASYEARTFGVRSAMPSSTALRRCPELIFVPPRFDAYRAVSHQIRAILLDYTDLVEPL
                     ALDEAYLDVTEDRRGLGSARATAEEIRRRIRETTGLTASAGVSYNKFIAKLASDQNKP
                     DGLCVIPPHRGADFVAGLPVSRFHGVGPVTAAKMERLGIRTGADLRACDLTFLQAHFR
                     SSADYLYGAARGEDHRPVRSDRPLKSVGAERTFDIDLIREAVLREALARVADAAWTRI
                     ERHGARGRTLTLKVRYADFRTITRARTLPTPFGDRGSFGDEGWALLAALLPAPQGIRL
                     LGLTLSGLAGEEGAPVQPTLPLD"
BASE COUNT          464 a          909 c          884 g          404 t
ORIGIN      
        1 gcgatcaggg tcaagctgcg gagctgcgcg tgcatcgccg cggcgagcgt catcgtcccg
       61 cccaggcagt agccgaccag atgaaccggt tcgcccagct cggccagcag cggcagcaaa
      121 aactgctcca catgaccggc aatatccagc tccgcctcct cctccgcgtc ggcgggatcg
      181 ccccaatcca cgagcagcgg ccgcacgccc ttccctgcga gccagcccag cagcgaattg
      241 ccttcggaga ggtcgagaat gaagggcggg ttgatcagcg acggtacgaa cactgccggc
      301 ggccccgatc cgccatagtc gcgcagcatc gcccggccgg cgcgcgcggc tggcggcatt
      361 tcgggcggcc gcggcaggcg ctccgcctcc tgataggccc gcaaacccgc cagcacggcc
      421 gcgcggcgca ccggatcgcc ctcggtctgc tcccgcacca tgtcgaggaa caggggcagt
      481 ggacgcggcc cgtgttgcgc cgcggcacga gggggtgcta ccgtcggatt ttcctttgaa
      541 ggcgcgtcca tggccaaaaa tcctcgcggc gaatccggca ccgtcatcat caagaaatac
      601 gcaaaccggc ggctctataa taccgagagt tcaagctaca tcacgctcga tcacctcgcc
      661 gcaatggtca gagaggggcg cgagttccag gtgctcgatg cccgcagcga cgaagacatc
      721 acccgcggtg tgttgaccca gatcatcatg gaggaagagc agcgcggcca gaccatgctg
      781 ccggtcaatt tccttcgcca gctgatctcg atgtacggcg attcgatgca gtcgatggtg
      841 ccgcaatatc tcgaggcctc gatggaggcg ttccggcgca accaggcgca attccagaaa
      901 gcgatggaag gcgcgttcgg cggcgggcct ttcgccgaga tcgcgcggcg caacatggaa
      961 atgttcgaag ccgcggccag cgcttttcgg ccgaagcaag gaatggccga gggcggctcc
     1021 aaggacgacg agatcgccac gctcaaggcc cagttgttcg agctccagtc gaagatcgaa
     1081 aagctcggct gatctcagtc gagcggcagc gtcggttgga ccggcgcacc ttcctcgccg
     1141 gccagacctg agagtgtgag cccgagcaga cgaatgccct gcggcgcggg cagcagcgcc
     1201 gcgagcaagg cccagccctc gtcgccgaag ctgccgcgat cgccgaatgg cgttgggagc
     1261 gtccgcgccc gggtgatggt gcggaaatcg gcgtagcgga ccttcaaggt cagcgtccgc
     1321 ccgcgggcgc cgtgccgctc gatccgtgtc caggccgcat cggcaacgcg cgccagcgct
     1381 tcgcgcagca cagcctcgcg gatcaggtcg atatcgaagg tccgctccgc gcccaccgat
     1441 ttgagcgggc gatccgaccg cactggccgg tgatcctcgc cccgcgccgc gccgtaaaga
     1501 taatcggcgc tgctgcggaa atgcgcttgc aggaaagtca ggtcgcaagc gcgcaggtcc
     1561 gcaccggtgc gtatgcccag ccgctccatc ttcgccgccg tgaccggacc caccccgtga
     1621 aaccggctga ccggcagtcc agcgacgaaa tcggccccgc ggtgcggcgg gatcacgcag
     1681 agcccgtccg gcttgttctg gtccgatgcg agcttggcga tgaacttgtt gtacgacacg
     1741 cccgccgaag cggtgaggcc ggtggtctcg cgaatgcggc gccggatttc ctcggccgtg
     1801 gcgcgggccg agccaagccc tcgccgatct tccgtcacgt ccagatacgc ctcgtcgagc
     1861 gccagcggct cgaccagatc ggtatagtcg agcaggatcg cgcggatctg gtgcgagacg
     1921 gcgcgatagg cgtcgaagcg cggcggcacg aagatcaact cggggcagcg cctgagcgcg
     1981 gtcgaggacg gcatggccga gcgcacgccg aaggttcgcg cctcatagct cgccgccgca
     2041 acgacgccgc ggcccttggc gctccctacc gctacgggga ggcccctgag cgcgggatcg
     2101 tcgcgctgct ccaccgacgc gtagaacgcg tccatgtcga tatgaatgat cttgcgcggc
     2161 tgagtcatac ggcagcgccg ccgctctatc acaaagcccc tttaatcggc gagcagccgc
     2221 ccggtgcgct tggcatccag agagtatcgc cgtcttcgag cagtcccggc tgatcggctt
     2281 gatctgcctt ggcgcgactc taaacgttgc tggcgacggc cagcgataca gtcgctggcg
     2341 ctgccaaacg ggggaggagc gtgcagatac cttatatctc ccgggcgcga acgctcggct
     2401 atcagaggcg cgttgagaag tggggatcca gaaaaggccc cgcggttgcc cgcgaggccc
     2461 tctcatctaa acctggacta aggccagtct tactcgtcgc cgcctttcag gaaggccggc
     2521 gcgaactcgg gctcggggcc ttcgtccttg ccgccttcgc cacgatcccg gcggggacgg
     2581 tcgccccgat cgccgcgcgg gccgcggccg tcgcggcggc ggtcaccgtc gcggcggggg
     2641 ccgcgatcac cccggccttc g
//
LOCUS       DASQVK010000107         2452 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_132974,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000107 DASQVK010000000
VERSION     DASQVK010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2452)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2452
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132974"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..645)
                     /locus_tag="VE567_02215"
     CDS             complement(<1..645)
                     /locus_tag="VE567_02215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HYZ47686.1"
                     /translation="MAWPVERERHSLTDLFSADSQRLSRLTLEAAGLYFDWSKTHLTE
                     DLIDQFVRVTGERDLAGAREALFQGRIVNPSEGRPAEHTAERGEGAPDSVARARAFHN
                     RMRALIDAIEAGALGEIRHVLHVGIGGSALGPDLLIDALGREADRYEVAIVSNVDGAA
                     IEEAMRRFDPETTLLVVASKTFTTTETMLNAASALSWMVEAGVEDPYGRVVALTA"
     gene            707..883
                     /locus_tag="VE567_02220"
     CDS             707..883
                     /locus_tag="VE567_02220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47687.1"
                     /translation="MAKENDPEIIVGRDDAEVRPEDRPPDGKEHGHPLPAAGNARHGS
                     IPEHIEKDRGHGDN"
     gene            942..>2452
                     /locus_tag="VE567_02225"
     CDS             942..>2452
                     /locus_tag="VE567_02225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014077687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYZ47688.1"
                     /translation="MSNFELNRRTVLQGAAAGAALMSSASALAESGDMAAIRAAVEKG
                     RDAGIKRLQEWIATPSIAAENRDMPKGAEYMAALARDAGFQHVEIVQTDGHPGVFATL
                     DAGAKRTVGLYFMYDVKQYDPAEWSSPPLEARIVDKPGMGRAIVGRGATNQKGPEATF
                     LAALHAIRAAGRKLPVNLVLVAEGEEEIGSPHFAQIVRRPDIAARLKQTVGVFMPSNG
                     QSPNGEVTITLGSKGIIECELISSGESWGRGPSKDVHSSLKAAVDSPVWRLVQAMQTL
                     VSPDGNMVMIDGWNEHVRPLTAREKAIIAENARATSEADAMKALGVKHWIDDLSWQAS
                     RERLAAAPTANIEGLVAGYTGQGGKTILPHKGVAKMDFRLVPNQTHADCVAKLKAHLA
                     KRGFGDIQVNVSGGYDPTETAEDSRLIQTEIATYKKLGITPTLYPRNAGSWPGYVFTG
                     APLSLAAGHFGLGHGSGAHAPDEYYLIEPSNPKVAGFDQAAMSYVEFLYALASA"
BASE COUNT          449 a          796 c          842 g          365 t
ORIGIN      
        1 ggcagtgagt gcgacgacac ggccataggg atcctccacc ccggcctcga ccatccagga
       61 aagcgcgctg gcggcgttca acatcgtctc ggtggtggtg aaggtcttgg acgcgaccac
      121 cagcagcgtc gtctcgggat cgaagcggcg catcgcctct tcgatcgccg cgccatcgac
      181 gttcgagacg atcgcgacct catagcggtc cgcttcgcgg ccgagcgcat cgatcagcag
      241 atcggggccg agcgccgatc cgccgatgcc gacatgcagc acgtgccgga tctcaccgag
      301 cgcgccggct tcgatcgcgt cgatgagcgc gcgcatccgg ttgtgaaagg cgcgggcgcg
      361 cgcgacgcta tcgggcgcgc cttcgccgcg ctcggccgtg tgctcggccg ggcggccttc
      421 gctcgggttg acgatcctgc cctggaagag cgcctcgcgc gccccggcga gatcgcgctc
      481 gccggtcacg cggacgaact ggtcgataag gtcttcggtg aggtgggttt tcgaccagtc
      541 gaaatagagg cccgcggctt cgagcgtcag ccgcgacagc cgctgcgaat cggccgaaaa
      601 caggtcggtc agtgaatgtc gctcgcgttc gacaggccag gccatgaaca atctccctcg
      661 ccgcgcgctt ctagaggcgc gaaccgcgca tgcaaggagg cgcgacatgg caaaagagaa
      721 cgacccagag atcatcgtcg gacgcgacga tgcggaagtc cggcccgagg accggccgcc
      781 cgacggcaag gagcacggcc atcccctccc tgcggccggc aatgcccggc acggatcgat
      841 cccggagcat atcgagaaag accgcggcca cggcgataat tgacccgttt acgtgacgcg
      901 gatcgcgccc tagcctcctg aaaacagggg aggctttgcc aatgagcaat tttgaattga
      961 accggcggac cgtgctgcag ggggcggccg cgggcgcggc tttgatgagt tccgcctcgg
     1021 cgcttgcgga atcgggcgac atggccgcga ttcgcgctgc ggtcgagaag ggccgtgacg
     1081 cgggcatcaa gcggctgcag gagtggatcg ccacgccttc gatcgccgcc gagaaccgcg
     1141 acatgccgaa aggtgcggag tatatggccg cgctggcacg cgacgcgggt ttccagcatg
     1201 tcgagatcgt gcagaccgac ggccatccgg gcgtgttcgc gacgctcgac gccggggcca
     1261 agcgcaccgt cggcctctat ttcatgtacg acgtcaagca gtacgacccg gccgaatggt
     1321 cgtcgccgcc gctggaggcg cggatcgtcg acaagcccgg catgggccgc gcgatcgtcg
     1381 gccgcggagc caccaaccag aaagggccgg aggcgacgtt cctggccgcg ctgcatgcga
     1441 tccgtgcggc cggtcgcaag ctgccggtca atctggtgct ggtcgccgaa ggcgaggaag
     1501 agatcggctc gccccatttc gcccagatcg tccggcgccc ggacatcgcc gcccggctga
     1561 agcagaccgt cggcgtcttt atgccatcga acggccagtc gccgaacggc gaagtgacaa
     1621 tcacgctcgg ctcaaaaggc atcatcgagt gcgagctgat ttccagcggc gaaagctggg
     1681 gccgggggcc gagcaaggat gtgcactctt cgctgaaggc ggcggtcgac agccccgtgt
     1741 ggcggctcgt gcaggcgatg cagacgctcg tctcgccgga cggcaatatg gtcatgatcg
     1801 acgggtggaa cgagcatgtc cgcccgctca cggcgcgcga aaaggcgatc atcgccgaaa
     1861 atgcccgcgc gaccagcgag gccgatgcga tgaaggcgct gggggtcaag cactggatcg
     1921 acgatctgtc atggcaggcg agccgggagc ggctcgcagc ggcgccgacc gccaatatcg
     1981 aggggctggt tgccggctat accgggcagg gcggcaagac gatcctgccg cacaagggcg
     2041 tggccaagat ggatttccgg ctggtgccga accagaccca tgccgattgc gtggcgaagc
     2101 tgaaggcgca tctcgccaag cgcggctttg gcgacatcca ggtaaacgtc agcggaggct
     2161 atgacccgac cgagaccgcc gaggacagtc gcctgatcca gaccgagatc gccacctaca
     2221 agaagctcgg catcacgccg acgctttacc cgcgcaatgc gggctcctgg cccggctatg
     2281 tcttcaccgg cgcaccgctg agcctggccg ccgggcattt cggcctgggc catggcagcg
     2341 gcgcgcacgc gccggacgaa tattatctga tcgagccgag caatcccaag gtggcgggct
     2401 tcgaccaagc ggcgatgagc tatgtcgaat tcctgtacgc cctcgcctcg gc
//
LOCUS       DASQVK010000108         3951 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_101903,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000108 DASQVK010000000
VERSION     DASQVK010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3951
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101903"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..237
                     /locus_tag="VE567_02230"
     CDS             <1..237
                     /locus_tag="VE567_02230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016746870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HYZ47689.1"
                     /translation="IGARVEELPDGLIVEGTGGEPLPGGATVASKLDHRIAMSFAVAG
                     LNCLAPVTIDDMSPVATSFPVFGDLIDKLRVASA"
     gene            234..863
                     /gene="cmk"
                     /locus_tag="VE567_02235"
     CDS             234..863
                     /gene="cmk"
                     /locus_tag="VE567_02235"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004127 - cytidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HYZ47690.1"
                     /translation="MIIAVDGPAASGKGTIARALARHYKLPHLDTGLLYRAVGQTVLD
                     RGGDPANGADALAACAFDDALLEDPRLKSDLAGNAASVVSAHPQVRAALIDRQRAFAD
                     QPGGAVLDGRDIGTVIAPHADAKLFVRAAPAIRARRRHEELLRAGSKLSYDKILADIR
                     ARDRRDSSRAAAPLRQAEDAMMLDTSYLSIESAITHAIGLVERKLGRAT"
     gene            986..2860
                     /locus_tag="VE567_02240"
     CDS             986..2860
                     /locus_tag="VE567_02240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase subunit alpha"
                     /protein_id="HYZ47691.1"
                     /translation="MATAAHQLTPQEASAHPPAENVVVRFAGDSGDGMQLTGGQFTLS
                     TALAGNDLATFPDFPAEIRAPQGTTFGVSAFQINFGSTEVETAGDAPDVLIAMNPAAL
                     KVNVSSLKDGGLIIADEGEFGARNLAKAGYDANPLEDGSLARWQLLAFNISQLTLDAV
                     KPFGLGNKEALRCKNMWTLGLALWMFDRDRQPIVDWLKAKFAKAPTLAEANIAALNAG
                     HAYGETAELSGFLKQHHISPAPAAPGLYRTVTGAESISLGLVAGAQLAGLPMFFGGYP
                     ITPASAILHHLSRLKEYGVSTFQAEDEIAAICSAIGASYAGSLGVTSSSGPGIALKTE
                     AMGLAIMTELPLVIVNSQRGGPSTGLPTKTEQSDLYQAVYGRNGDAPMPVIAARSPAD
                     AFDCAIEAVRLATQFMTPVMLLTDGYIANAAEPWRVPDMGRYAPFPVAFLEKAPESGF
                     QPYARDEKLARPWVKPGTPGLLHRIGGIEKANLSGNIDYSPANHQLMTDLRADKVLGI
                     ADHVPEQDVTLGETSGKLAVVGWGSTYGPIHQAVRRQRMKGRDVHHIHVRHIWPLPKN
                     LGTLLKGYEKILVPEMNRGQFKTVLRDQYLVDAKPLNKVSGQPFRISEIEAAIEAALA
                     "
     gene            2887..3924
                     /locus_tag="VE567_02245"
     CDS             2887..3924
                     /locus_tag="VE567_02245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HYZ47692.1"
                     /translation="MNDMTPIAKTSPKDWETDQEVRWCPGCGDYAILKAVQRTMPELG
                     VDPANTVFVSGIGCSSRFPYYMETYGFHTIHGRAPAVATGVKLANPELDVWIITGDGD
                     ALSIGGNHTMHLLRRNLDCQILLFNNEIYGLTKGQASPTSRIGTRSPSTPFGSVDRPA
                     SPCAFALGSGARFVARGIDVHKNLPSVLKAAHAHKGASFVEIYQNCIVYNDEVFANFT
                     EKAKAAVNQIWLENGQPMLFANGTLGLKLNAKELRLEIVNVENGDWQAAGVIVHDQTN
                     KGIAQMLIDMEVENGFPVALGVIYNHPRPTFERAVVEQNRAAAEGKKPDLQKLVAKGQ
                     TWMVEKQPHEI"
BASE COUNT          716 a         1381 c         1195 g          659 t
ORIGIN      
        1 attggcgccc gcgtggaaga actgcccgac ggcctgatcg tcgaaggcac tggcggcgag
       61 cccctccccg gcggcgcgac cgtcgcttcc aagctcgatc accgcatcgc gatgagcttc
      121 gccgtcgccg gcctcaactg ccttgccccc gtcacgatcg acgatatgag ccccgtcgcg
      181 accagtttcc cggtattcgg ggacctgatc gacaagttgc gagtagcctc agcatgatca
      241 tcgccgtcga cggaccggcc gccagcggca aaggcacgat cgctcgtgcg ctggcgcggc
      301 attacaagct gccgcatctc gacaccgggt tgctttaccg cgccgtcggg cagaccgtgc
      361 tcgatcgcgg tggcgatccg gcgaacggcg ccgatgccct cgccgcctgc gctttcgacg
      421 acgcgctgct cgaagatccg cggttgaaga gcgatttggc gggaaacgcc gcgtcggtcg
      481 tctcggcgca tccgcaggtg cgcgccgcgt tgatcgaccg ccagcgcgct ttcgccgatc
      541 agcccggcgg cgcggtgctc gacggccgcg atatcggcac agtgatcgcc ccgcacgccg
      601 atgcgaaact ctttgtccgc gccgcccccg cgatccgggc acggcgccgc cacgaagagc
      661 ttctccgcgc cggctccaag ctcagctacg acaagatcct ggccgatatc cgcgcgcggg
      721 atcggcgcga ctccagccgc gccgccgccc ccctccgcca ggccgaagac gccatgatgc
      781 tcgacaccag ctatctgtcg atcgaatcgg ccatcacgca cgcgatcggc cttgtggaac
      841 gcaaactcgg ccgcgcgacc taggttgttc cggcaatcca gcctcacgtc ccaatccggt
      901 ttgcactccg ccgcagattt tctacattgg cggcataagg atggcggcct aggcgaccgc
      961 ccagccacac gcaggacagc atcaaatggc cacagccgcc catcagctta ctccccagga
     1021 ggcgagcgcg cacccgcccg ccgaaaacgt cgtcgtccgc tttgccgggg attccggcga
     1081 cggcatgcaa ttgacgggcg gccaattcac gctctcgact gcgctcgccg gcaacgacct
     1141 cgcgaccttc ccggatttcc ccgccgaaat ccgcgcgccc cagggcacga cgttcggcgt
     1201 ctccgccttc cagatcaatt tcggctcgac cgaggtggaa acggccggcg acgcgccgga
     1261 cgtgctgatc gcgatgaatc cggcggcatt gaaggtgaat gtctccagcc tcaaggatgg
     1321 cggcctgatc attgccgacg aaggcgaatt cggcgcccgc aatctcgcca aggcgggcta
     1381 tgatgcgaac ccgctggagg atggcagcct cgcccgctgg cagcttctcg ctttcaatat
     1441 ctcgcagctc accctcgatg ccgtgaagcc gttcggcctc ggcaacaagg aagctttgcg
     1501 ctgcaagaat atgtggacgc tggggctggc gctctggatg ttcgaccgcg accggcagcc
     1561 gatcgtcgat tggctcaagg caaaattcgc caaggcgccg acgcttgccg aagccaatat
     1621 cgccgcgctc aacgccggtc atgcctatgg cgagacggcg gagctgtccg gtttcctgaa
     1681 gcaacatcac atttcaccgg cgcccgcagc gcctggcctg taccgcacgg tcaccggggc
     1741 cgagtcgatc tcgctcgggt tggtcgccgg cgcgcagctt gccggtctgc cgatgttctt
     1801 cggcggctat ccgatcacgc cggcatcggc gatcctgcat catttgtcgc gcctcaagga
     1861 atatggcgtt tcgaccttcc aggcggagga cgagatcgcc gcgatctgct cggcgatcgg
     1921 cgcttcctat gccggttcgc tcggcgtcac ctcgtcctcg gggcctggca ttgcgctcaa
     1981 gaccgaggcg atggggctgg cgatcatgac cgagctgcct ttggtcatcg tcaactcgca
     2041 gcgcggcggc ccttcgacgg gtctccccac caagacggag cagtcggacc tttaccaggc
     2101 cgtctatggc cgcaacggcg acgcgccgat gccggtcatc gccgcccgct cgcccgccga
     2161 cgcctttgac tgcgcgatcg aggcagtgcg gctggcgacc cagttcatga cgccggtcat
     2221 gctgctgacg gacggctata tcgcgaacgc cgccgaacct tggcgcgtgc cggacatggg
     2281 ccgctacgcg cctttcccgg tggcgttcct ggagaaagcg ccggaatccg gctttcagcc
     2341 ctatgcccgc gacgagaagc tcgcccgccc ctgggtcaag cccggcacgc ccggcctgct
     2401 ccaccggatc ggcggcatcg aaaaggcgaa cctctccggc aatatcgact attcgccagc
     2461 gaaccaccag ttgatgacgg atctgcgcgc ggacaaagtg ctcggcatcg ccgatcatgt
     2521 gccggagcag gacgtcacgc tcggcgagac gagcggcaag ctggccgtgg tcggctgggg
     2581 ctccacttat ggcccaatcc accaggcggt gcgccgccag cggatgaagg gccgcgacgt
     2641 ccatcacatc catgtccgcc acatttggcc gctgccgaag aatctcggca ctcttctcaa
     2701 aggttacgag aagatcctcg tacccgaaat gaacaggggc cagttcaaga cggtgctgcg
     2761 cgaccagtat ctggtcgacg ccaagcccct caacaaagtc tccggccagc ccttccgcat
     2821 cagcgagatc gaggccgcga tcgaagccgc tttggcctaa cctttccctc actttaggcg
     2881 cacgccatga atgacatgac ccccatcgca aagaccagcc ccaaggattg ggagacggat
     2941 caggaagtgc gctggtgccc cggttgcggc gactatgcga tcctgaaagc cgtgcagcgg
     3001 acgatgccgg agctgggcgt cgatccggcg aacacggtgt tcgtgtccgg catcggctgc
     3061 tcgtcgcgct ttccctatta catggaaacc tatggcttcc acacgatcca cggccgcgcg
     3121 cccgcagtcg caaccggggt gaagctcgcc aatccggagc tcgacgtgtg gatcatcacc
     3181 ggcgacggcg acgcgctgtc gatcggcggc aaccacacga tgcacctgct ccgccgcaat
     3241 ctcgactgcc agatcctgct gttcaacaac gagatctacg gcctgaccaa aggccaggcc
     3301 tcgccgacct cgcggatcgg cacccgttcg ccctcgaccc cgttcggctc cgtcgaccgg
     3361 ccggcgagcc cttgcgcctt cgcgctcggc tccggcgccc gcttcgtcgc ccgcggcatc
     3421 gacgtgcaca agaaccttcc ctcggtgctg aaggccgccc acgcccacaa gggcgcgagc
     3481 ttcgtggaaa tctaccagaa ctgcatcgtc tataatgacg aggtcttcgc caatttcacc
     3541 gaaaaggcga aggcggccgt caaccagatc tggctggaaa acggccagcc aatgctgttc
     3601 gcgaacggca ctctcggcct caagctcaat gcgaaggagc tgcggctcga gatcgtcaat
     3661 gtcgagaatg gcgactggca ggcggcgggc gtgatcgtcc acgatcagac caataagggc
     3721 atcgcccaga tgctgatcga catggaagtc gaaaacggct tcccggtcgc gttgggcgtc
     3781 atctacaacc acccgcgccc cactttcgaa cgcgccgtag tcgaacagaa ccgcgccgcc
     3841 gccgaaggca agaagcccga cctgcaaaag ctcgtcgcca agggccagac ctggatggtc
     3901 gagaaacagc cgcacgagat ttgagctgcg attccagcgt ctggacgctg g
//
LOCUS       DASQVK010000109         2736 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_386309,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000109 DASQVK010000000
VERSION     DASQVK010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2736
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386309"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(47..1336)
                     /locus_tag="VE567_02250"
     CDS             complement(47..1336)
                     /locus_tag="VE567_02250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HYZ47693.1"
                     /translation="MVVAAEQRPARQSAGLLRALGSGIITGAADDDPSAIGTYASAGA
                     KFGLSFLWVAPVLLPMMYVVVYLAAKLGRVYGKGLFAVIRDRYPPWLLYPLMVGATIG
                     NVIEAAANLGGIAASLNLLIPLPVPMIVVIVAVVVLALQLWGSYALLRNIFKWLALAL
                     FAYFAAAVMAKPDIWEVVGGTLVPRIQFTSEFLLMIVACIGTSLSAYIYTWQSNQEVE
                     DEIEEGKRTVEQRRGAGNSDSELRRTRRDVLIGMVFSNLILYFIILATGATLHAAGTR
                     EIETAAEAASALEPLAGAGAKVLFALGVVGVGFLALPVLTAGAAYNLAQALEKPSSLN
                     AKPGEAPLFYLTIAAVTLVAALLNFLGLNPMKALVWSGVVQGFSVPPLLLVMMLLTND
                     REVMRERANSSLTNILGAITTAVSFAATACLVVTWFL"
     gene            complement(1585..2571)
                     /locus_tag="VE567_02255"
     CDS             complement(1585..2571)
                     /locus_tag="VE567_02255"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYZ47694.1"
                     /translation="MAAAAPLTHVETLELDRLPEHLIVLGGGYVGVEFAQAFRRFGSR
                     ATVVEYGPQLLAREDADVSEAIRAVFEKDGIDVILSAEARSVEGRTGERVRLHLRTAA
                     GERVLEGSDVLAATGRTPNTEGIGLDRAGVELDPRGYIKVNEHLETSAPAVWAMGECA
                     GSPQFTHVAFDDFRVVRDNLAGGKRTTRDRLIPYCAFIDPELGRVGLNETEARQKGVG
                     VRVVRLPMASVLRARSLGETRGFMKVLLDTGSDSILGFAMLGPGAGEIIAVVQTAMLA
                     GLPCTGLRDAIFAHPTMAEGLNVLLAGAPRALPARRGASPGQLARKFKQARQ"
BASE COUNT          516 a          926 c          839 g          455 t
ORIGIN      
        1 tcccaggcgg cgcgtgggag gggtggaaag gcccctgatt gcaagatcag agaaaccagg
       61 tcacgacgag gcaggcggtc gcagcaaagc tcacggccgt ggtgatcgcc ccgaggatgt
      121 tcgtcagact actgttcgcg cgctcacgca tgacctcacg gtcgttcgtc aacagcatca
      181 tcacgagcag caggggcggt acggagaagc cctggaccac gcctgaccat acgagagctt
      241 tcatcgggtt aaggccgagg aagttgagca gcgcggccac gagcgtaacc gctgcgatgg
      301 tcagataaaa caggggtgct tcgccgggtt ttgcattcag gctgctcggt ttttccaacg
      361 cctgcgccag gttgtaggcg gcgcccgccg tcaacacggg gagcgcgaga aaaccgacgc
      421 cgaccacgcc cagcgcgaac aacaccttgg cgcccgctcc ggccaagggc tcgagtgcag
      481 acgctgcttc cgcggcggtc tcgatttccc gcgttcccgc cgcatgaagc gtcgcgccgg
      541 tcgccagaat gatgaaatag agaatcaggt tcgagaacac cattccgatc aggacatcgc
      601 ggcgggttcg ccttagctcg ctgtcgctgt tgccagcgcc gcgtcgctgc tcaacggtcc
      661 gcttgccctc ctcgatctcg tcctccacct cctgatttga ttgccacgtg tagatatagg
      721 ccgacagcga cgtgccgatg catgccacaa tcatcaaaag aaattcactg gtgaactgga
      781 tgcggggcac cagcgtgccg ccgacgacct cccagatgtc gggtttcgcc attacagccg
      841 cggcgaaata ggcaaacagc gcaagggcaa gccacttgaa gatattccgc agcagcgcat
      901 acgaacccca aagctgaagc gcgagcacga ccaccgccac gattacgacg atcatcggta
      961 ccggtagcgg gatcaacagg ttcaacgagg cagcgatgcc cccgaggttt gccgcggcct
     1021 cgatgacgtt cccgatagtt gcgccaacca tcagcgggta gagcagccag ggtggatagc
     1081 ggtcacggat gaccgcgaac aaacccttgc cataaacgcg cccgagcttg gccgccagat
     1141 agaccaccac atacatcatc ggcagcagga ccggggctac ccagagaaac gacaggccga
     1201 actttgcccc ggcgctcgca taggtcccga tcgcggacgg atcgtcgtcg gccgcccctg
     1261 tgatgatccc gcttccaagg gcgcgcaaca ggcctgcgct ttgccgcgct ggccgttgtt
     1321 cggcggctac taccatcttc cttcaccgac atttcgagct tgcacagccg ccatggtcgg
     1381 tgaatgcgcg ggatcgggac acgttcctaa cgctgtcggc ggttatggcg cgagctcatg
     1441 gggcgcacgg cccggcaacg tcctgctcgc cttcgagatc ggcaatccct gacgcggtga
     1501 ggccgggcgc ggcacagtac ggattgccga tagcggcaac ttcaccgcct tgatgagcgt
     1561 cgcggccccg ctcgtaacgg ttcgctattg cctcgcctgt ttgaattttc tcgcaagttg
     1621 acccggcgag gcccctcgtc gcgccggcaa cgccctcggc gcgcccgcaa gcagcacatt
     1681 cagcccttcc gccatcgtcg ggtgcgcgaa gatggcgtcg cgcagccccg tgcagggcag
     1741 cccggccaac atcgccgtct gcacgacggc gattatctct ccggcgccgg gccccagcat
     1801 cgcgaagccg agaatgctgt cgctgcctgt atcgaggagc accttcatga agccccgcgt
     1861 ctcgccgagg ctgcgcgcgc ggaggaccga ggccatcggc agccgaacca cccgcacgcc
     1921 cactcccttc tgcctggcct cagtctcgtt caatccgacc cgtccaagtt cggggtcgat
     1981 gaaggcgcag tacgggatca ggcgatcgcg cgtcgtccgc ttgcctccgg caaggttgtc
     2041 gcgcaccacc cggaaatcgt cgaaggcgac gtgcgtgaac tggggactgc cggcgcattc
     2101 gcccatcgcc cacaccgcgg gggcgctggt ctcgaggtgt tcattgactt tgatgtagcc
     2161 gcgcggatca agctccaccc ctgcgcggtc gagcccgatg ccctcggtat tcggcgtgcg
     2221 accggtggcc gcgagcacgt cgctgccctc gagaacccgc tcgcccgcgg ccgtccggag
     2281 gtgcagccgc acccgttcac cggtgcgtcc ttcgaccgac cgcgcttcag cgctcaggat
     2341 gacatcaatt ccgtccttct caaagacagc gcggatcgct tcgctgacgt ccgcatcctc
     2401 gcgcgccagc agttgcggac catattcgac tacggtagcc cggctgccga accgacggaa
     2461 ggcctgcgca aattcgaccc cgacatagcc gccaccgagc acgatcagat gctcgggcaa
     2521 acggtccagt tccagcgtct cgacatgggt cagcggagca gcagcggcca agcccggaaa
     2581 tgtcgggaac cgtcgcatgc gtgccgagat cgaggaagac gcgttcggcc tcgatccgcc
     2641 gggcgcctcc cgctgtcaag ctgacctcga tcgtccgggg cgcaacgaag cggccttcgc
     2701 cgaggaggaa ttcgagccca ttggccgcga accgct
//
LOCUS       DASQVK010000110         7377 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_323062,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000110 DASQVK010000000
VERSION     DASQVK010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 7377)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7377)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7377
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323062"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..191
                     /locus_tag="VE567_02260"
     CDS             <1..191
                     /locus_tag="VE567_02260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYZ47695.1"
                     /translation="SRSRSVGGTGLGLAIVKHIVERHRGRLEIRSTPGKGTTASALLP
                     PAPIPLSSNGNAVVTGAR"
     gene            212..901
                     /gene="phoU"
                     /locus_tag="VE567_02265"
     CDS             212..901
                     /gene="phoU"
                     /locus_tag="VE567_02265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009821133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0051049 - regulation of transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HYZ47696.1"
                     /translation="MNEHTLKAFDDEIVELRGLISEMGGRAEAAIESAVIALSRYDVD
                     LAARVIEDDRKIDELEIAVERLAVQIMTLRAPMADDLRETVAALKIAGVIERIGDYAK
                     NIAKRVAQMSRNAKVEVISVLPAMARLAGDMLRDVLNAFAARDPEAAIDVCNRDREVD
                     DFYNSIFRTLLTFMMENPTTIGEAAHLLFIAKNLERIGDHATNIAEMVYFAATGVYLP
                     ERERGPDTLES"
     gene            904..1602
                     /gene="phoB"
                     /locus_tag="VE567_02270"
     CDS             904..1602
                     /gene="phoB"
                     /locus_tag="VE567_02270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon transcriptional regulator
                     PhoB"
                     /protein_id="HYZ47697.1"
                     /translation="MNRAKMLLVEDDAALAELLVWHFQRENFDVRQTADGEEALLIAQ
                     ENPPDLVLLDWMIEGLSGIEVCRRLRRLPSTQNVPIIMLTARGEEEDRIRGLETGADD
                     YVTKPFSPRELVARVGAVLRRVRPALAGEQLTYADLEMDTVGHKVRRDGRLIPLGPTE
                     FRLLKHFLEHPGWVFSRERLLDSVWGHDADIEPRTVDVHIRRLRQAINAGGKPDIIRT
                     VRSAGYALDAEGKL"
     gene            1618..1800
                     /locus_tag="VE567_02275"
     CDS             1618..1800
                     /locus_tag="VE567_02275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47698.1"
                     /translation="MLSRLAGSVISSVNWIEVGSKVAERGASLDEFIEAMRTSPLEIA
                     AFDRPQAEAAAKLMIR"
     gene            complement(1804..2817)
                     /locus_tag="VE567_02280"
     CDS             complement(1804..2817)
                     /locus_tag="VE567_02280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HYZ47699.1"
                     /translation="MTASLHRIDAGPAPSLDPMLRLVAHDMNAVNSVILERMQSDVPL
                     IPELAGHLIAGGGKRMRPMLTLACARLLDYMGTRHHKLAAAVEFIHTATLLHDDVVDG
                     SDLRRGQRTANIIWGNPASVLVGDFLFSRSFELMVEDGSLKVLRILSNASAIIAEGEV
                     NQLTAQRQVATSAERYLEIIGAKTAALFAAACRIAAVVAERPEAEELALDAYGRNLGI
                     AFQLVDDAIDYTSDEATMGKEVGDDFRDGKVTLPVILAHARGTAEEKSFLRDAMMGFR
                     KSDEDLARATKLLRQTGALDDTIAQARHYGQRAIDALGGFGPSAAKAALTEAVAFAVS
                     RAY"
     gene            2898..3176
                     /locus_tag="VE567_02285"
     CDS             2898..3176
                     /locus_tag="VE567_02285"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007682458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0046417 - chorismate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HYZ47700.1"
                     /translation="MNDDQLTRYRESIDNIDAALVFMLAERFKITQAVGTYKAEQGLP
                     PADPGREERQIARLRRLAAEANLDPEFSEKFLRFIIEEVIRHHERLRQ"
     gene            complement(3514..4383)
                     /locus_tag="VE567_02290"
     CDS             complement(3514..4383)
                     /locus_tag="VE567_02290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47701.1"
                     /translation="MNDGAKGAKESHDVAQEQQACRSQANSEMLKAFVFEKARALRAA
                     DAPTLDQLVKESTVQIADALPKGRDAALNVAICQGRMVVALPSSAADPFGGSHQLAAQ
                     IDFAVQSTAGGQPFVYPIRGIDPIVYRLAAINLPRGQVVPGASGPAPPNRVETAQVAP
                     RPAAAASVGPVRPVPIRTSVRNKEPPRMRGGVAPEPRLTGRGRPSFNCRYARSRDERA
                     VCGDERLAALDRVAASLYRNAHAQGGRYERAALSDARDRLIARRRRCDNAACIAAAYR
                     DNMDRIDEIMSRD"
     gene            complement(4513..5124)
                     /locus_tag="VE567_02295"
     CDS             complement(4513..5124)
                     /locus_tag="VE567_02295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47702.1"
                     /translation="MACWSPAHAGPLSFGPIHGDANLAKGEMVENCVPLPAQARAAKT
                     CTLPRATFGGLLIDRAAVELNSAGRVRSLTMLLDRDDYDLAYRLLKGRYGAPTSLKDF
                     PRWTRFYDGETLSIRKGAANTAIAFDFPENAEAAPEQSSGPLWYAVLLLALAVAAGLV
                     LYRRYRARGRKSRLAVATARRGAQVSMRETLERRLREGRDLRF"
     gene            complement(5361..5561)
                     /locus_tag="VE567_02300"
     CDS             complement(5361..5561)
                     /locus_tag="VE567_02300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008070955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47703.1"
                     /translation="MANGITLTFSEDEAEILIDALEADLEGYIESAKEARGNNRRSDV
                     QAFTEAAERITAVRDRIKAALG"
     gene            complement(5634..6749)
                     /locus_tag="VE567_02305"
     CDS             complement(5634..6749)
                     /locus_tag="VE567_02305"
                     /inference="COORDINATES: protein motif:HMM:NF025341.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl protease family protein"
                     /protein_id="HYZ47704.1"
                     /translation="MRRFRGGDDAVGCARPRHIRGLIPALALTLFTVSGAHPDCAWAA
                     SGKPRHELDPAAKMPPLPPAVIDDTLAIGGEDIDARKVRTRMTVAVQVNGRGPYRFVV
                     DSGADSSVIGMRIARLLQLPAGTPVMLNAMTESSRVDRVLVDELRLGESAIRDLQLPA
                     LHEKDLGGDGMIGIDALVEQRLMMDFETRVIKVEDARLPPPRLEGEIVVVARRRRGQL
                     ILTQVTANRRPVDAVIDTGSEITIGNLALRDRLLRRDPDKFMTIGVTGVTGATVNLQL
                     ARIAELRVGSIILRDVPIAFAEVPPFAVFGLSEQPALLLGTDILESFRRVSLDFRARK
                     VRFQLKRCGSTGIILSTSFSSSLTRLSANKDSETCRR"
     gene            complement(6892..>7377)
                     /locus_tag="VE567_02310"
     CDS             complement(6892..>7377)
                     /locus_tag="VE567_02310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007684070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HYZ47705.1"
                     /translation="LGFGINRISTGTAQALFWVYAALIGVQFSSLFLVYTGTSIAQAF
                     FATAAAFLGLSLYGYTTKRDLSGFGTFLIMGVFGILIAMLINIFLQSSAMAFAISVLG
                     VLLFAGLTAYDTQRIKSMYSYHAGTDFMGKSVIMGALNLYLDFVNMFMFLLQLFGGRR
                     N"
BASE COUNT         1382 a         2337 c         2395 g         1263 t
ORIGIN      
        1 cgagtcgcag ccgatcggtc ggaggcaccg gcctcggcct cgccatcgtc aagcacattg
       61 tcgagcgtca tcgtggccgg cttgaaattc gctcgactcc aggcaaggga acgaccgcca
      121 gcgcattatt accgcccgcg ccgatcccat tgtcatcaaa tggcaacgct gttgtaacag
      181 gggcgcgctg acagcgcgtc agggggttgg ggtgaacgaa catacgctca aggcttttga
      241 cgacgagatc gtcgaactcc gaggtctgat ttcggaaatg ggcggccgtg ccgaagccgc
      301 catcgaaagc gcggtcattg cgctcagccg ctacgatgtg gacctcgcgg cgcgcgtgat
      361 cgaggacgac cgcaagattg acgagcttga aatcgcggtc gagcggcttg ctgtgcagat
      421 catgacgctc cgcgcgccga tggccgacga tctgcgggaa acggtcgcgg ccctgaagat
      481 cgccggcgtg atcgagcgga tcggcgatta tgcgaagaat atcgccaagc gcgtggcgca
      541 gatgtcccgc aacgccaagg tggaagtgat ctctgtgctg cccgcgatgg cgcggttggc
      601 gggtgacatg ctccgcgatg tgctcaatgc atttgccgcg cgcgaccccg aagccgcgat
      661 cgatgtctgt aaccgcgacc gcgaggtcga cgatttttat aacagcatct tccggaccct
      721 gctgaccttc atgatggaaa atccgacgac gatcggcgag gccgcgcacc tgctcttcat
      781 cgcgaagaac cttgagcgaa ttggggacca cgcaaccaac atcgccgaga tggtctattt
      841 cgcggccaca ggtgtttatc ttccggagcg cgagcgcggc ccggacacgc tggagtcctg
      901 agcatgaacc gcgccaagat gctgcttgtg gaggacgacg ccgcgctggc agagctgctg
      961 gtctggcatt tccagcgcga gaatttcgac gtcaggcaga ccgccgacgg cgaggaggcg
     1021 ctgctgatcg cccaggaaaa tccgccggac ctggtgctgc tcgactggat gatcgaaggg
     1081 ctgtcgggca tcgaggtctg ccgccggttg cggcggctgc cgagcaccca gaatgtgccg
     1141 atcatcatgc tcaccgcgcg cggcgaggaa gaagaccgga ttcgcgggct ggaaacgggc
     1201 gccgacgact atgtcaccaa gcccttctcc ccgcgcgaac tggtggcccg cgtcggcgcg
     1261 gtgctgcgcc gcgtccggcc ggcactggcc ggcgagcagc tcacttatgc cgatctcgaa
     1321 atggacacgg ttgggcacaa ggtgcggcgg gacgggcggc tgattccgct cggccccacc
     1381 gaattccgcc tgctcaagca ttttctcgag catccgggct gggtgttttc gcgggagcgc
     1441 ctgctcgaca gcgtctgggg gcacgacgcc gatatcgagc cgcgcaccgt cgatgtgcat
     1501 atccggcgtc tccgtcaggc gataaacgcc ggcggcaaac ccgacatcat ccgcacggtc
     1561 cgcagcgccg gctacgcgct cgacgccgaa gggaagctct gatcgtcgca ggcacgggtg
     1621 ctgtcgcgcc tggctggatc ggtcatcagc agcgttaact ggatcgaagt cggcagcaag
     1681 gtcgccgaac gcggagccag tctggacgag tttatcgagg cgatgcgaac ctctccgctc
     1741 gaaatcgccg catttgaccg cccgcaggcg gaggctgcgg caaagctgat gatccgctga
     1801 ggctcaatat gctcgcgaga ctgcgaacgc gacggcttcg gtgagtgctg ccttggcggc
     1861 gctggggcca aagccgccga gcgcgtcgat cgcgcgctgg ccataatgcc gggcctgggc
     1921 aatggtgtcg tcgagcgcgc cggtctgcct gagcagcttg gtcgcgcggg caaggtcttc
     1981 gtccgacttg cgaaagccca tcatcgcatc ccgcaaaaac gacttttcct cggccgtgcc
     2041 tcgcgcatgg gcgaggatta ccggcagcgt cactttgcca tcgcgaaaat cgtcgccgac
     2101 ttccttgccc atcgtcgctt cgtcggacgt atagtcgatt gcatcatcga caagctggaa
     2161 ggcgatgccc agattgcggc cataggcgtc gagcgcgagc tcttcggcct cggggcgctc
     2221 cgcgaccacc gcggcgatcc ggcacgcggc cgcgaacaac gccgcggtct tggcgccgat
     2281 gatctccaga tagcgctccg cgctcgttgc gacctggcgt tgcgccgtca gctggttgac
     2341 ctcgccctcg gcaatgatcg ccgaagcgtt ggataggatg cggagcactt tcaggctccc
     2401 atcctccacc atcagctcga acgagcggct gaacaggaag tcgccgacca gcacgcttgc
     2461 cggattgccc cagatgatgt tcgcggtgcg ctggccgcgc cgcaggtccg aaccatccac
     2521 gacatcgtcg tgaagcaatg tggcggtatg gatgaactcc accgcggcag cgagcttgtg
     2581 gtggcgcgtg cccatataat cgagcagccg ggcgcaggcg agcgtcagca tcggccgcat
     2641 ccgcttgccg ccgcctgcga tcagatgccc ggccagctcc gggatcaggg gcacgtccga
     2701 ttgcatgcgc tccaggatca cgctgttcac cgcattcatg tcatgcgcga caaggcgaag
     2761 catcggatcc agcgaaggcg cgggcccggc gtcgatacgg tgtaggctgg cagtcatgaa
     2821 acggccatgt ggcgcggtgg ccttgcgctt gcaagcctcg cttcggcatg aacacgatcg
     2881 aagcaaggag aagccagatg aacgacgacc agctcacgcg ctatcgcgaa agcatcgaca
     2941 atatcgacgc ggccttggtg ttcatgctgg ccgagcggtt caaaatcacg caggcagtcg
     3001 gcacctacaa ggcggaacaa gggctgccgc ccgccgatcc aggccgcgag gagcggcaga
     3061 tcgcgcgcct ccgccgcctc gccgccgaag cgaatctcga tccggaattc tccgagaaat
     3121 tccttcgctt catcatcgag gaagtgatcc gccaccacga acggctgcgg cagtgaggat
     3181 tcgccgatca gggtccttaa attcacaaac ttcttagggt gagccgcctt tttcgtgaat
     3241 ttaagcggga tttgcaagaa aagtcagcga cttgcacaaa aaccgcagcg gccagccgtg
     3301 gatatggcgc gacgagtggt gaacgatgcc aaagagccgc gtgccgccca aaggcgggcc
     3361 caggactata tcagagcccg cccgctgtag gacagcttga acacggcccg gcgcaaggcc
     3421 agccatgggt ggaacgttga ggctaatgtc ccgatacgct gcaagggcgg gaggggaggc
     3481 tttttctttg ctgaaggcga gggtgctgcg ccttcagtcg cgggacatga tctcgtcgat
     3541 ccgatccata ttgtcgcgat aggctgcggc gatgcaggcc gcattgtcgc aacggcggcg
     3601 gcgggcgatg aggcgatccc ttgcgtcgct caaagccgct cgctcatagc ggccgccctg
     3661 ggcatgcgcg tttcggtaga gcgaggccgc gacccggtcg agagcggcca ggcgctcgtc
     3721 tccgcatacg gctcgctcgt ctcgcgagcg ggcataacgg cagttgaagc tcggccggcc
     3781 tctgccggtc aggcgcggct cgggcgcgac gccgccccgc atgcgcggtg gctccttgtt
     3841 ccgaaccgaa gtgcggattg gcacagggcg cacaggcccg accgacgctg cagcggctgg
     3901 gcgaggcgcc acctgcgctg tctcgacgcg gttcggggga gccggacctg acgcgcctgg
     3961 aacgacctgc ccccttggca gattgatcgc ggcgaggcga tagacgatcg ggtcgatccc
     4021 cctgatcgga tagacaaacg gctggccgcc agctgtcgat tgaaccgcga aatcgatctg
     4081 ggcggccaat tgatggcttc cgccaaatgg gtcggccgca ctggagggta gcgcgacgac
     4141 cattcgcccc tggcagatgg ccacattcag agcagcgtcc cggccctttg gcagggcatc
     4201 cgcaatttgt actgtcgatt ccttgacgag ctggtcgagc gttggcgcgt cggccgcgcg
     4261 caatgctctc gccttttcga acacgaaggc tttcagcatt tcggagttcg cctggctcct
     4321 gcacgcttgc tgctcctgcg caacgtcgtg gctctccttt gcgccctttg cgccatcgtt
     4381 caccgaacga ctgcacgccg agccaacaac tccgatgaaa agcaggggca ggagcgccgc
     4441 gcggccgaac ggtcggactg gtccaatgtt ggccgatgtt cgcttatggg ccatcgcgat
     4501 caccccgatg aatcagaacc gcagatcccg gccctctcgg agccggcgct caagtgtttc
     4561 ccgcatcgaa acctgcgcgc cacgccgagc cgtagcgacc gcgagcctgg acttgcgccc
     4621 acgggcccga taccgccggt aaaggacaag gcccgcggcg acggccagcg ccagcaggag
     4681 caccgcatac catagcggac ctgaactttg ctccggcgca gcttcggcat tctcgggaaa
     4741 gtcgaaggcg atcgccgtgt tcgccgcgcc ttttctgatg ctgagcgtct cgccgtcata
     4801 aaagcgggtc cagcgcggga aatccttgag gctggtcggc gccccatagc gacctttcag
     4861 cagccgatag gcgagatcat aatcatcgcg atccagtaac atggtcagcg aacgaaccct
     4921 tcccgccgag ttcagctcga ccgccgcgcg atcgatcaga agaccgccga acgtggcgcg
     4981 cggtaaggtg caggtctttg cagcccgcgc ctgcgccggc agcgggacgc aattctcgac
     5041 catctcgccc ttcgcgagat tggcatcgcc gtgaatcggt ccgaaactca gcggccctgc
     5101 atgcgccggg gaccagcacg ccatcgccat gaccggccaa gtgataaaag ctatccgccg
     5161 gatcagggct cgcctccgtg atgcgcaagg tcgtttcgag acagtaacgc acgaaaaggc
     5221 ggaacggctg caaaggcagg cagccgactg ttttagaaaa tcttgtctgc caggcgctgc
     5281 ctgcgaccga tcttgcggcg cggcccaagc ggttcgcacc gcccgcgggc ggtgcgctcc
     5341 gtcaacgcgt gcggacagcc ttagcccaaa gctgccttga tccggtcgcg cacggcggtg
     5401 atccgctcag cggcctcggt gaaggcctgc acatcggacc gccgattgtt gccgcgggcc
     5461 tccttggcag actcgatata gccttccagg tccgcctcca gggcgtcgat caggatctcg
     5521 gcttcgtctt cgctgaatgt gagagtgatg ccatttgcca ttggccggcc gtatttgtcc
     5581 gaggcggctt gaacaatacg gaaaattcga tttctccgct attcgcggcg cgctcacctt
     5641 cggcaggttt cgctgtcctt gttcgccgaa aggcgggtga gagacgaaga gaaggaggtg
     5701 ctgagaatga ttccggtcga gccgcagcgt ttcagctgaa agcgcacctt gcgcgcgcgg
     5761 aagtcgagcg acacgcggcg gaacgactcc agaatgtcgg tgcccagcag cagggccggc
     5821 tgttccgaaa ggccgaacac cgcaaagggc gggacctcgg caaaggcgat gggtacgtcg
     5881 cggaggatga tcgagccgac ccgcagctcg gcaatgcgcg ccaattgcag attgaccgtg
     5941 gcgccggtga cgccggtcac gccgatcgtc atgaatttgt ccggatcgcg acgaaggagc
     6001 cggtcacgca gcgcgaggtt gccgatcgtg atttccgagc ccgtgtcgat gacggcatcg
     6061 accggccggc ggttggcggt aacctgggtc aggatcagct ggccgcgccg gcgccgcgcc
     6121 accacgacaa tttcgccctc gagccgaggc gggggcaggc gcgcatcctc gaccttgatg
     6181 acgcgcgttt cgaaatccat catcagccgc tgctcgacga gagcatcgat gccgatcatg
     6241 ccgtcgccgc caaggtcctt ctcgtgcagc gcgggcagct gcaagtcccg gatggcgctt
     6301 tcgcccagtc gcagctcatc gaccaggacg cgatcgacgc ggctgctttc ggtcatggcg
     6361 ttcaacatga ccggcgtgcc ggctggcagc tgcagcaggc gcgcaatgcg catgccgatc
     6421 accgaactgt cggcgccgct atccaccacg aagcgatagg gaccgcgccc gttcacctgc
     6481 accgcgaccg tcatccgcgt gcggaccttg cgcgcgtcga tatcctcgcc gccgatcgcc
     6541 agcgtgtcgt cgatcactgc aggcggcagc ggcggcatct tcgccgcggg atcgagttcg
     6601 tgcctgggct tgcccgacgc ggcccaggca caatcggggt gggcgccgga gacagtgaag
     6661 agcgtcagcg cgagcgcggg gatcaggccg cgaatatgcc tcggccgcgc gcagccgacc
     6721 gcgtcatcgc ctcctcgaaa gcgtctcacg cccccggtct gttctccttg ccaccggatt
     6781 gcaaggcggc ggcgaccgac agcggaggcc gttcgataaa atgcgacgaa aaatgaaaag
     6841 gcccggcgag tttccccgcc aggccttccg tttcggttgc agtggtttcg cttagttgcg
     6901 gcggccgccg aacagctgga ggaggaacat gaacatgttc acgaagtcca gatagaggtt
     6961 cagcgcgccc atgatcaccg acttgcccat gaaatcggtg ccggcgtggt aagagtacat
     7021 gctcttgatc cgctgcgtat cgtaagcggt caggcccgcg aacagcagca cgccgaggac
     7081 actgattgcg aacgccatcg cgctggactg caggaagatg ttgatcagca tcgcgatcag
     7141 gatgccgaac acgcccatga tcaggaacgt gccgaagccc gacaggtcac gcttggtggt
     7201 gtaaccgtag aggctgaggc ccaggaacgc cgcggccgtc gcgaagaaag cctgcgcgat
     7261 cgaggtcccg gtatagacca ggaacaggct cgagaactgc acgccgatca aggcggcata
     7321 gacccagaac agcgcttgtg ccgtacccgt cgagatgcgg ttgatgccga agccgag
//
LOCUS       DASQVK010000111         2868 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_291627,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000111 DASQVK010000000
VERSION     DASQVK010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2868
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291627"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..248)
                     /locus_tag="VE567_02315"
     CDS             complement(<1..248)
                     /locus_tag="VE567_02315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011445748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HYZ47706.1"
                     /translation="MTYRSTLLRLLDERGYIHQITDAEALDALAVSQIVPGYIGFDAT
                     APSLHVGSMVQIMLLRRLPQAGHKPIVLMGGGTTKVGDP"
     gene            complement(295..597)
                     /gene="cutA"
                     /locus_tag="VE567_02320"
     CDS             complement(295..597)
                     /gene="cutA"
                     /locus_tag="VE567_02320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010038 - response to metal ion [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent-cation tolerance protein CutA"
                     /protein_id="HYZ47707.1"
                     /translation="MIATVYAVFADAAEAERIAEAVVTERLAACANLLGACRSIYRWQ
                     GAIERAEEVPALFKTAQPEALIARIAELHGYDVPAAVAWPITHAHLPYAQWVEAES"
     gene            complement(594..1604)
                     /locus_tag="VE567_02325"
     CDS             complement(594..1604)
                     /locus_tag="VE567_02325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017182641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HYZ47708.1"
                     /translation="MLNPPSRPNAIANWLLAVAALVFLMLVVGGITRLTESGLSITEW
                     RPVSGALPPMTHAQWESAFALYKGTTQYQTMNRSMSLSEFQFIFFWEYIHRLLGRLIG
                     IAFALPLLWFAAKRQIPPGYGWRLVALFALGGLQGAVGWWMVKSGLVGRTEVSHYRLA
                     VHLMTALFIMAGLIWTALDLKWLARDRGSRPARLRPLAAGSLLVLAVQVLLGAWTAGL
                     RAGLAASDWPLMNGRFFPEVSPDFPSNMANDPFLVQWEHRWWAWVAVAALAVLARLAK
                     RARDRRASIALHSAFGVQIVLGIATVMSGVNFTLAVLHQAVGALVVASATWCAHAAGR
                     RG"
     gene            1730..2098
                     /locus_tag="VE567_02330"
     CDS             1730..2098
                     /locus_tag="VE567_02330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003042822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerC domain-containing protein"
                     /protein_id="HYZ47709.1"
                     /translation="MIERLSGTGTLDRLAIGLSGLCLVHCLASALLLSLLASVGGMLL
                     HPAIHETGLGIAIALGTLALVRGAAQHGYMLPGAVGGLGLGLMAGALTVPHGSAETVY
                     TMLGVAVLALGHDLNRRAAS"
     gene            2142..2606
                     /locus_tag="VE567_02335"
     CDS             2142..2606
                     /locus_tag="VE567_02335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HYZ47710.1"
                     /translation="MTGHHHAHPVGDDLVAAARHALERAGEQWTDMRQSVFETLASFE
                     RPASAYDIADEVSRRLNRRVAANSVYRILDLFVGANLVRRVESANAYVANEHPDCLHD
                     CIFLVCDNCGQTTHIDDDSVASNIRSAASKTGFAPVRPVIEVHGRCADCADE"
     gene            2660..>2868
                     /locus_tag="VE567_02340"
     CDS             2660..>2868
                     /locus_tag="VE567_02340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase
                     N-terminal domain-containing protein"
                     /protein_id="HYZ47711.1"
                     /translation="MSTKTETPLLDRVSYPADLRELPPGELRQLADELRAEMVSAVSV
                     TGGHLGAGLGVVELTVALHYVFDTPS"
BASE COUNT          487 a          949 c          976 g          456 t
ORIGIN      
        1 ggatcgccga ctttggtggt gccgccgccc atcagcacga tcggcttgtg cccggcctgc
       61 gggaggcggc ggagcagcat gatctgcacc atcgacccga catgcagcga cggtgcggtc
      121 gcgtcgaagc cgatatagcc cggcacgatc tggctgacgg ccagcgcgtc cagcgcctcg
      181 gcgtccgtga tctggtgaat atagccgcgc tcgtcgagca ggcggaggag agtggagcga
      241 taggtcatcg tccgctgcct ttagcggcta ggaggttgcg aggggaaggc cgtcctaact
      301 ctcggcttcc acccactggg catagggcag gtgagcatgc gtgatcggcc aggcgaccgc
      361 ggcggggacg tcatagccgt gaagctcggc aatgcgcgca atcagcgctt ccggctgcgc
      421 ggtcttgaac agcgccggca cttcctctgc gcgctcgatc gcgccttgcc accgatagat
      481 cgagcggcag gcgccaagca gattggcgca ggcggcgaga cgctccgtca ccaccgcttc
      541 cgcgatccgc tccgcctcgg ccgcatcggc gaagacggca tagacggtcg cgatcatccg
      601 cggcgccccg cggcatgagc gcaccaggtc gcgctcgcca cgaccagcgc gccgaccgcc
      661 tggtgcagca ccgcaagcgt gaaattcacg ccgctcatca cggtggcgat gccgaggacg
      721 atctggacgc cgaatgcgga gtgcagcgca atgctcgcgc gccggtcgcg ggcgcgcttg
      781 gcgagccggg cgagcacggc cagtgccgcg accgccaccc aggcccacca gcggtgctcc
      841 cactgcacca gaaagggatc attggccatg ttggacggga agtcgggcga gacttcaggg
      901 aagaagcggc cgttcatcag cggccagtcg ctcgcggcaa gcccggcgcg cagccccgcg
      961 gtccaggcgc caagcaagac ctgcacggcc agcaccagca gcgatccggc ggccagcggc
     1021 cgcagccgcg ccggacggga cccgcgatcc cgggcgagcc atttgagatc gagcgcggtc
     1081 cagatcagcc cggccatgat gaacagcgcc gtcatcagat gcaccgccag gcggtaatgg
     1141 ctgacctcgg tgcggcccac cagccccgac ttcaccatcc accagccgac cgcgccttgc
     1201 agcccgccaa gggcgaacag tgccaccagc cgccagccat agccgggcgg gatctgccgc
     1261 tttgccgcga accagagcaa aggcagcgca aaggcgatcc cgatcagccg cccgagcagg
     1321 cggtgaatat attcccagaa aaagatgaac tggaactcgc tcaggctcat cgagcggttc
     1381 atcgtctggt attgcgtcgt gcccttgtag agcgcgaagg cgctctccca ttgcgcatgc
     1441 gtcatgggcg gcaaggcccc gctgaccggc cgccattcgg tgatcgagag cccggattcc
     1501 gtgagccggg taatgccgcc caccacgagc atcaggaaaa cgagcgcggc gacggccagc
     1561 agccagttcg cgatcgcatt ggggcgggag gggggattga gcacagcgtg gctctgcgac
     1621 gggatgcgtg aagagacaag ggctcatcgg attgggggcc catcggatcg ggatgatatg
     1681 ttgtaacgcc ttgctcgccc tgccatatag ggccggtcgg gagtcgcgcg tgatcgaaag
     1741 gctgtcagga acggggacac tggatcggct ggcgattggc ctgtcgggcc tgtgccttgt
     1801 ccactgcctg gcgagtgcgc tcctgctgag cctgcttgcc tctgtcggcg gcatgctcct
     1861 gcaccccgcc attcacgaga ccgggctcgg catcgccatt gcgctcggca ccttggcgct
     1921 cgttcgcggc gcggcgcagc atggctatat gcttcccgga gcggtcggcg gcctcggcct
     1981 cggcctgatg gcgggcgcgc tgaccgtccc gcacggttcg gcggaaaccg tctatacgat
     2041 gctcggcgtg gccgtcctgg ctctcggcca cgacctgaac cgccgcgctg cgtcctgacc
     2101 cggaccttgt tcggggcatt tgtgcagcgt aacatagcct gatgaccggc catcatcatg
     2161 cgcaccccgt gggcgacgat ctcgtcgccg cggcccgcca cgcgctggag cgtgcgggag
     2221 agcaatggac ggacatgcgc cagagcgtgt tcgagacgct cgccagcttc gagcggccgg
     2281 cctccgccta tgacatcgcc gacgaagttt cccgacggct gaaccgccgc gtcgccgcca
     2341 acagcgtcta tcgcatcctc gacctgttcg tcggcgccaa tctggtgcgg cgcgtcgaaa
     2401 gtgcgaacgc ctatgtggcg aatgagcatc ccgattgcct gcacgactgc atttttctgg
     2461 tgtgcgacaa ttgcggacag acgacgcata tcgacgacga ttcggtcgcc tcgaacatcc
     2521 gcagcgccgc cagcaagacc ggctttgcgc cggtgcggcc cgtgatcgaa gtgcacggcc
     2581 gctgcgccga ttgcgccgac gagtgaaacg gcgacgatcc cggctttgag ccggccatgg
     2641 ccggggctaa aggaagccga tgtcgaccaa aaccgaaaca ccccttttgg accgcgtgtc
     2701 ttatcccgcc gatctgcggg agttgccgcc tggggagttg cgtcagctgg cggacgagtt
     2761 gcgggcggag atggtgtcgg cggtgtcggt gaccggcggg catttggggg cggggctggg
     2821 cgtcgtcgag ctgaccgtgg cgcttcatta tgtgttcgac acgccttc
//
LOCUS       DASQVK010000112         2454 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_102088,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000112 DASQVK010000000
VERSION     DASQVK010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2454)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2454)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2454
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102088"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..915
                     /locus_tag="VE567_02345"
     CDS             <1..915
                     /locus_tag="VE567_02345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47712.1"
                     /translation="VGALVHKAILATLILLLVLGLVVLVVMRKPLRPALLGGLAIAVA
                     ILGHLSVNVAIERISGHAPLDPPFLLARMVGDGTVPSYLDRTCPAQHFYLCRYRDRLP
                     LTENDFLWGRDPQKSVFATASLDDKRRILAEANTIVRGAILTDPWGQLSRTAGNMARQ
                     FFVAGIEEYGVLPINAATDNSGMRQTLLTYVRDSGIAERTMPLRSFSMATQIPYLLGL
                     AVLAILLIGGRDRLEPSLRLLILFLIAGVVLNAAVCGGLAGVFDRYQGRVAWLIPLIA
                     MCALILWRRAQARMSAPSDITTTAPAAP"
     gene            complement(887..2371)
                     /gene="gatA"
                     /locus_tag="VE567_02350"
     CDS             complement(887..2371)
                     /gene="gatA"
                     /locus_tag="VE567_02350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010403224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HYZ47713.1"
                     /translation="MTAITDLTVAELRDGFRAGAFSAREAAAAFSAAVAGAKALNAFL
                     VETPEHALAAADAADKARAAGEAPKPLAGVPLGIKDLFCTEGVQTTAASHILGGFKPP
                     YESTVTANLWRAGAGMLGKLNMDQFAMGSSNETSAFGNVISPWRRSDGGNAPLAPGGS
                     SGGSSAAVAARIAPGATGTDTGGSIRQPAAFTGISGIKPTYGRCSRWGVVAFASSLDQ
                     AGPMARTVRDCAILLEAMSGFDPRDATSLDLPVPAWEAGLSSDLKGKRIGIPKEYRVD
                     NMPAEIDALWRQGIEWALDAGAEVVEVSLPHTKYALPAYYIIAPAEASSNLARYDGVR
                     YGLRELPDGAGLQDMYAATRAAGFGQEVKRRILIGTYVLSAGFYDAYYNQAQKVRALI
                     ARDFDDVWEHCDLLLTPTAPSAAFALGEKSADPIAMYLNDVFTVPSSLAGLPAMSVPA
                     GLDGQGLPLGLQIIGKAFDEQGVLNAGLALEERAGFTARPERWW"
     gene            complement(2371..>2454)
                     /locus_tag="VE567_02355"
     CDS             complement(2371..>2454)
                     /locus_tag="VE567_02355"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006450 - regulation of translational
                     fidelity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HYZ47714.1"
                     /translation="EGDIRDKVLANAPQAEHGFFAVPKVIE"
BASE COUNT          389 a          844 c          788 g          433 t
ORIGIN      
        1 gttggcgcac tggtgcacaa ggcgatcctg gcgacattga tcctgctgct cgtgctgggg
       61 ctggtcgtgc tggtcgtgat gcggaaaccg ctccggcctg cgctgctggg cgggcttgcc
      121 attgccgtcg ccattctcgg ccatttgtcg gtcaatgtcg cgatcgagcg cattagcggc
      181 cacgcgccgc tcgacccgcc gtttttgctc gcccgcatgg tgggggacgg cactgtccct
      241 agctatctcg atcggacctg ccccgcccag cacttctacc tgtgccgtta tcgcgaccgc
      301 ttgccgttga ccgaaaacga cttcctgtgg ggccgcgatc cgcaaaagtc ggtcttcgcc
      361 actgcctcgc tggacgacaa gcgccgaatt ctcgccgaag ccaatacgat cgttcgcggt
      421 gcgatcctga ccgacccatg gggccagctc agtcgcacgg caggcaatat ggcgcgtcag
      481 tttttcgtcg ccgggatcga ggaatatggc gttttgccga ttaacgccgc gacggacaat
      541 tcgggcatgc ggcagacttt gctcacctat gtcagggata gcgggatcgc ggagcggacg
      601 atgcccctgc gctccttcag catggccacc cagattccgt atctgctcgg gctcgccgtg
      661 ctggcgatcc tgctgatcgg cggacgtgac cggctcgagc cctccttacg gctgctaatc
      721 ctgttcctga tcgccggagt cgtactcaac gccgctgtat gcggcggcct ggcgggcgtg
      781 ttcgaccgct accagggccg cgtcgcctgg ctgatcccgc tgatcgcgat gtgcgccctt
      841 atcctttggc gccgcgctca ggcgcgcatg tcggcgccca gcgacatcac caccaccgct
      901 ccggccgcgc cgtaaagccc gcgcgctctt ccagcgcgag gccggcattc agtacgcctt
      961 gttcgtcgaa tgccttgccg atgatctgga ggccaagcgg caagccctgc ccgtccagcc
     1021 ccgccggcac cgacatggcc ggcaggcccg cgagcgacga aggcacggtg aagacgtcgt
     1081 tcagatacat ggcaatcgga tcggccgatt tctcgccaag tgcaaaagcg gccgagggcg
     1141 cagtgggggt gaggagcaga tcgcaatgct cccacacatc gtcgaagtcg cgcgcgatca
     1201 gcgcccgcac cttttgcgcc tggttgtaat aggcgtcgta aaagccggcc gagagcacat
     1261 aggtgccgat caggatccgg cgcttcactt cctggccgaa acccgcggcg cgcgtcgccg
     1321 catacatgtc ctgcaggccc gcgccgtcgg ggagctcgcg caggccgtag cgcacgccgt
     1381 catagcgggc gaggttcgac gaggcctcgg ccggggcgat gatgtagtac gccgggagcg
     1441 catatttggt gtggggaagc gaaacctcga ccacctcggc gcccgcgtcc aacgcccatt
     1501 caatgccttg ccgccacagc gcgtcgattt cggcaggcat attgtcaacg cggtattcct
     1561 tggggatgcc aatgcgcttg cccttgaggt ctgacgagag gcctgcttcc cacgccggca
     1621 cgggcaggtc gagcgaggtc gcgtccctcg gatcgaagcc gctcatcgct tccaggagga
     1681 tcgcgcaatc cctgaccgtc cgcgccatcg gcccggcctg gtcgagcgac gaggcgaagg
     1741 cgaccacgcc ccagcgcgag cagcggccat aggtcggctt gatcccactg atgccggtga
     1801 aagccgcggg ctggcggatc gacccgcccg tgtcagtgcc cgtggcgccg ggtgcaatcc
     1861 gcgccgcaac cgccgccgag ctgccgccag acgagccgcc cggcgcgagc ggcgcattgc
     1921 ccccgtcgct ccgccgccag ggcgaaatga cgttgccgaa cgcgctggtc tcgttcgacg
     1981 agcccatcgc gaattgatcc atgttgagct tgccgagcat gcctgccccg gcgcgccaga
     2041 gattcgcggt gaccgtcgat tcataaggcg gcttgaaccc gccaaggatg tggctggccg
     2101 cagtcgtctg cacgccttcg gtgcagaaca gatccttgat gccgagcggc acgcccgcga
     2161 gcggcttggg cgcctcgcct gccgcgcgtg ccttgtccgc ggcgtcggcc gcagcgagtg
     2221 catgctccgg cgtttcgacc agaaaggcat tcagagcctt cgcgcccgcg accgctgcgc
     2281 tgaacgccgc ggccgcctcg cgcgcggaaa acgcgcccgc gcggaacccg tcgcgaagct
     2341 ccgcgaccgt cagatcggta atcgccgtca ttattcgatc accttaggca ccgcgaaaaa
     2401 accgtgctcg gcctggggcg cattggcgag caccttgtcc cggatatcgc cttc
//
LOCUS       DASQVK010000113         2225 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_386698,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000113 DASQVK010000000
VERSION     DASQVK010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2225
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386698"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(282..959)
                     /gene="trmB"
                     /locus_tag="VE567_02360"
     CDS             complement(282..959)
                     /gene="trmB"
                     /locus_tag="VE567_02360"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HYZ47715.1"
                     /translation="MSDPLTIRRLYGRAKGHKLRLGQQELLDDLLPRVSLPEGPLDAR
                     SVFGDDRPLEFEIGFGAGEHLAAQAEARPSHGFIGCEPFLNGVVGALAKIDDRALGNV
                     RVHMGDALDVLERLPDASLERLYLLHPDPWPKARHAKRRMVNHGPLDLIAAKLKPGGE
                     FRLGTDDPVYCRWSMMVMNQRRDFEWQVRTAADFLARPADWPETRYEAKARRQGHEVW
                     YFRYLRA"
     gene            1009..>2225
                     /locus_tag="VE567_02365"
     CDS             1009..>2225
                     /locus_tag="VE567_02365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYZ47716.1"
                     /translation="MKWLTTVLAAAMAVAPAAAKTLYVHAGRLVDPATAEVLPDRLIR
                     MEGDRVVEVGPWRTPAAGAEVIDWSGYTVLPGLIDLHTHLADVGDSADPLLPYKTSPA
                     ATALLGASHALTTLRAGFTTVRDVGTYRAFTDVALRDAIRAGLVPGPRMLVAGAYITK
                     PGGGGEVNVKGVAMPEDMRFGEASTPAQVRDKAEKIFAGGADFLKLIATGAVLAIGTE
                     PGEIELDEDEVRAAVDVAKAHGSFAIAHAHGTEGIKAAIRGGVRSIEHASLIDDEGIA
                     LAKAKGTWLVMDIYDGDYIAEEGRKAGWPAEYLRKNDETTEAQRQGFAKAVKAGAKIG
                     FGTDAGVYPHGLNARQFAYMVRYGMTPMQAIQSATTSAAELIGKQKDVGRIAPGFYAD
                     MVAVKGDPLTDIRV"
BASE COUNT          395 a          702 c          785 g          343 t
ORIGIN      
        1 agcgacacga agttggtcgt gatcgccttg ttgccgctga tccggaaact gccgctctcg
       61 acatcgtaat tgtcgcccag cgtcagtgca tcggcccggt tgaaattgtc ggtcacggtt
      121 gcttgcgcgg cggtcgtgta aagcagaacg gcgaacgccg ccataatcga acgcatgatg
      181 tttcacccct gttggttggt ttcagcgagg ggagcgctta acggcgcgtt aggcatgcgg
      241 aacggtcccg cgaccgaggc ggcgctccac gcgacgaaga ttcaggcgcg caggtacctg
      301 aaataccaga cttcatggcc ctgccggcgc gccttcgcct cgtagcgcgt ctccggccaa
      361 tccgcggggc gagcgaggaa gtcggcggcg gtccttacct gccactcgaa atcgcggcgc
      421 tggttcatca ccatcatcga ccagcggcaa tagaccgggt cgtcggtgcc gagacgaaac
      481 tcgccgcccg gcttcagctt ggcggcaatg aggtccaggg gcccgtgatt gaccattcgc
      541 cttttggcgt ggcgcgcctt gggccaggga tcggggtgga gcaggtaaag ccgctccagc
      601 gacgcgtcgg gcaggcgttc gagcacgtcg agggcatcgc ccatatggac gcgcacattg
      661 ccaagcgcac gatcgtcgat cttggcgagc gcgccgacga caccgttcag gaacggctcg
      721 cagccgataa agccgtggct tggccgcgcc tcggcctggg cggcgagatg ctcgcccgcg
      781 ccgaagccga tctcgaattc gagcggccgg tcgtcgccga acacggagcg cgcgtcgagc
      841 ggcccctcgg gcagcgacac gcgcggcaac aggtcgtcga gcagctcctg ttggccgagc
      901 cggagcttgt gccccttggc gcggccatag aggcggcgga tcgtcagtgg atcgctcatg
      961 aaagcggcgc tagcttcggc gcaggcgcaa gccaagaagg ggcgaatcat gaaatggctg
     1021 acgacagtcc tggcggccgc aatggcggtg gcgccggccg ctgcgaagac gctctacgtc
     1081 catgccggcc ggctggtgga tccggccacg gccgaggtgc ttcccgaccg gctgatccgg
     1141 atggaagggg atcgcgtcgt cgaagtcggc ccttggagaa cgccggcggc gggcgcggag
     1201 gtgatcgatt ggtcgggtta cacggtgctg ccggggctga tcgacctgca tacgcacctc
     1261 gctgacgtcg gcgactccgc ggacccgctg ctgccgtaca agacttcgcc cgcggccact
     1321 gccctgctgg gggcgagcca cgcgctgacg acactcaggg ccgggttcac gacggtgcgc
     1381 gatgtcggca cctatcgcgc cttcacggac gtcgcgctgc gcgacgcgat ccgggccggg
     1441 ctggtgccgg gcccgcgcat gctggtcgcg ggcgcctaca tcaccaagcc gggcggcggc
     1501 ggcgaagtga atgtgaaagg cgtcgccatg cccgaagaca tgcgcttcgg cgaagcgagc
     1561 acgcccgcgc aagtgcgaga caaggctgag aagatctttg ccgggggcgc cgatttcctg
     1621 aagctgatcg cgacgggcgc ggtgctcgca atcggcaccg agccgggcga gatcgagctt
     1681 gacgaggatg aggtccgcgc cgcggtcgac gtcgccaagg cgcatggcag cttcgcgatc
     1741 gcccatgcgc atggcacgga aggcatcaag gcggcgatcc gcggcggcgt ccgctccatc
     1801 gagcatgcga gcctgatcga cgatgaaggc atcgcgctcg ccaaggccaa gggaacgtgg
     1861 ctggtgatgg acatttatga cggcgactat atcgccgagg aagggcgcaa ggccggctgg
     1921 cccgccgaat atctgcgcaa gaacgacgag acgaccgaag cgcagcgcca aggctttgcc
     1981 aaggccgtga aggctggcgc gaagatcggc ttcggcaccg atgcgggcgt ctatccgcac
     2041 ggcctgaatg cgcgacaatt cgcctatatg gtccgctacg gcatgacgcc aatgcaggcg
     2101 atccagtcgg cgacgacctc agccgccgag ctgatcggca agcagaagga cgtgggccgg
     2161 atcgcgccgg gcttctacgc ggacatggtg gcagtcaaag gcgacccgct caccgatatc
     2221 cgcgt
//
LOCUS       DASQVK010000114         2451 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_386748,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000114 DASQVK010000000
VERSION     DASQVK010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2451
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386748"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            146..1381
                     /locus_tag="VE567_02370"
     CDS             146..1381
                     /locus_tag="VE567_02370"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004211732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HYZ47717.1"
                     /translation="MADAIETLQHEIEPSEIRSGDIDIQNYTINFGPQHPAAHGVLRM
                     VLELDGEIIERVDPHVGLLHRGTEKLIEHKTYLQALPYFDRLDYASPMSQEHSYVLAV
                     EKLLDLEVPLRARYLRVLFAELTRIKNHLLNLGSHVMDVGAMTPNLWLFELREDIMQF
                     YERVSGARMHAAWFRPGGVHQDAPLKLLADIGDWCDTRLPRLFEDAISLVADNRIFKQ
                     RNVDIAIVSKEDAIRWGFSGPMIRGSGIPWDLRKSQPYDAYDRVQFDVPVGTRGDCYD
                     RFMVRVEEVRQSARIIKQCLNDMPEGPIASLDRKVAPPKRGEMKRSMEALIHHFKLYT
                     EGFHVPAGEVYVATESPKGEFGVYLVSDGTNKPWRCKIRPTAFSHLQAMDFMCKGHML
                     ADVTAILGAIDIVFGECDR"
     gene            1381..2052
                     /locus_tag="VE567_02375"
     CDS             1381..2052
                     /locus_tag="VE567_02375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009821728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase subunit E"
                     /protein_id="HYZ47718.1"
                     /translation="MADAVQIPDEAETRARWGAFFWTAANAETAKEVIGRYPAGRQQS
                     AVMPLLDLAQRQVGEETNTQGWLPIPVIEFVARELDMPFIRAYEVATFYTMYNLAPVG
                     RFHVQVCGTTPCMLRGSDDVFRACHERGLKKGTTTADGLFTLSEVECLGACANAPMVQ
                     INDDNYEDLTFESTLAVLDALAKGEQPKTLSQIGRQTSAPEGGPTTLQAMVNENHDYR
                     SEWAA"
     gene            2054..>2451
                     /locus_tag="VE567_02380"
     CDS             2054..>2451
                     /locus_tag="VE567_02380"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402597.1"
                     /note="part of NADH-ubiquinone oxidoreductase complex I;
                     shuttles electrons from NADH, via FMN and iron-sulfur
                     (Fe-S) centers, to quinones in the respiratory chain; NuoF
                     is part of the soluble NADH dehydrogenase fragment, which
                     represents the electron input part of NADH dehydrogenase;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit F"
                     /protein_id="HYZ47719.1"
                     /translation="MLEDKDRIFTNLYGFQSWHLDAAMARGDWDDTKALMARGQDAII
                     DEIKASGLRGRGGAGFPTGMKWSFMPKEPKPGKPNFLVINADESEPGSCKDREIIRHD
                     PHKLIEGALIAGFAMRARAAYIYIRGEYIR"
BASE COUNT          479 a          790 c          781 g          401 t
ORIGIN      
        1 gccggccagc cgcatccggg caaccagccg caggaaaagc cggcccagaa ggatggcgcg
       61 cccgctgagc ctcccgctgc ggtcggcaag ccggaaaccg ccgagcccgt gccgcccaag
      121 accacctcca aggaggaggg aaagaatggc tgacgcgatc gagacgctgc agcacgagat
      181 cgagccgagc gagattcgct cgggcgatat cgacatccag aattacacga tcaatttcgg
      241 cccgcagcac ccggccgcgc acggcgtgct gcgcatggtg ctggagctgg acggcgagat
      301 cattgagcgt gtcgacccgc atgtgggcct gctccaccgg ggcaccgaaa agctgatcga
      361 gcacaagact tatctccagg ctctgcctta tttcgaccgg ctcgattacg catcgccgat
      421 gagccaggag cactcttacg tgcttgcggt ggaaaagctg ctcgatctcg aagtcccgtt
      481 gcgcgcccga tatcttcggg tgctgttcgc ggagctgacg cggatcaaga accatctgct
      541 gaaccttggc tcccacgtca tggacgtcgg cgcaatgacg ccgaacctgt ggctattcga
      601 gctgcgcgaa gacatcatgc agttttacga gcgggtttcg ggcgcgcgaa tgcacgcggc
      661 ctggttccgc cccggcggcg tgcatcagga cgcgccgctg aaactgctcg ccgatatcgg
      721 cgactggtgc gacacgcgcc tgccgcggct gttcgaggat gcgatcagcc tcgtcgcgga
      781 caaccgcatt ttcaagcagc gcaacgtcga tatcgcgatc gtctcgaagg aagacgccat
      841 tcgatggggg ttttcgggcc cgatgatccg cggctcgggc atcccgtggg atctgcgcaa
      901 gtcccagccc tatgacgctt atgaccgggt ccagttcgac gtgccggtcg gcacgcgcgg
      961 cgactgctat gaccggttca tggtccgggt cgaggaagtc cgccagtcgg cgcggatcat
     1021 caagcagtgc ctgaacgaca tgcccgaagg gccgatcgcc agcctggacc gcaaggtggc
     1081 gccccccaag cgcggcgaga tgaagcggtc gatggaagcg ctcatccacc acttcaagct
     1141 ctacaccgaa ggcttccacg tgcccgccgg cgaagtctat gtcgcgaccg aaagccccaa
     1201 gggcgagttc ggcgtgtacc tggtctcgga tggcaccaac aagccctggc gctgcaagat
     1261 ccgcccgact gccttcagcc atctccaggc gatggacttc atgtgcaagg gtcacatgct
     1321 cgccgacgta accgccatcc ttggcgcaat cgatatcgtg tttggtgaat gtgaccgctg
     1381 atggctgacg cagttcaaat ccccgacgag gccgagaccc gcgcgcgctg gggcgcattc
     1441 ttttggaccg cggccaatgc cgagacggcg aaggaagtca tcggccgcta tccggcgggc
     1501 cgtcagcaat cggcagtgat gccgctgctt gaccttgccc agcggcaggt cggcgaggag
     1561 acgaacaccc aaggctggct accgattccg gtcatagagt tcgtcgcgcg cgagctcgat
     1621 atgcccttca tccgggccta tgaggtcgcg accttctaca ccatgtacaa tctcgcgccg
     1681 gtcggccgct tccatgtcca ggtctgcggc accacgccgt gcatgctccg cggctccgac
     1741 gacgtgttcc gcgcctgcca tgagcgcggt ctgaaaaagg gcacgaccac ggccgatggc
     1801 ctgttcaccc tgtccgaagt cgagtgcctg ggggcctgcg ccaacgcgcc gatggtgcag
     1861 atcaacgacg acaattacga agacctgacg ttcgagagca cgctggccgt gctggacgcg
     1921 cttgccaagg gcgagcagcc gaagacgctc agccagatcg gccgccagac cagcgcgccc
     1981 gagggcgggc cgaccacgct ccaggcgatg gtgaacgaga atcacgatta ccggtcggaa
     2041 tgggcggcct gacatgctgg aagacaagga ccgcatcttc accaacctct acggcttcca
     2101 gtcgtggcat ctcgatgccg caatggcgcg cggggattgg gacgatacca aggcgctgat
     2161 ggcgcgcggc caggacgcga tcatcgacga gatcaaggcc tcgggcctgc gcggacgcgg
     2221 cggggcaggg ttcccgaccg gcatgaagtg gagcttcatg cccaaggagc cgaagcccgg
     2281 aaaacccaat ttcctcgtca tcaacgcgga cgagtcggag ccgggctcct gcaaggaccg
     2341 cgagatcatc cgccacgatc cgcacaagct gatcgaaggt gcgctgatcg ccggcttcgc
     2401 gatgcgggcg cgagcggcct atatctatat ccgcggcgaa tatatccgcg a
//
LOCUS       DASQVK010000115         3927 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_291786,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000115 DASQVK010000000
VERSION     DASQVK010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3927
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291786"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..586)
                     /locus_tag="VE567_02385"
     CDS             complement(<1..586)
                     /locus_tag="VE567_02385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0042398 - cellular modified amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-cysteine ligase family protein"
                     /protein_id="HYZ47720.1"
                     /translation="MSTREETGKDDPPIQDRSQLIEFFAGGEKPREAWRIGTEHEKFV
                     YRTADHRAPSYDEPGGICDLLAGLTRFGWEPVHEGDKVIALRGPDGTISLEPAGQLEL
                     SGAPLENLHQTCAETGRHLEQVKRVGDELGLGFLGLGMWPDKTRGELPIMPKGRYAIM
                     LRHMPRVGSLGLDMMLRTCTIQVNLDYSDEANMVK"
     gene            complement(637..1380)
                     /locus_tag="VE567_02390"
     CDS             complement(637..1380)
                     /locus_tag="VE567_02390"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010546124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HYZ47721.1"
                     /translation="MPATPAWPPNSAPRLFIDQPLADGMELRIEGGQAHYLLSVMRLK
                     TGGTVKLFDDRTGEWLGEVAGVGKRDLVVRIVARLRDREAVPDLWLCAAPIKRGRIDW
                     VAEKASELGVARLVPVATRRAVVDRLNGERLRAHMIEAAEQCERTALPELAEMVALDK
                     LLRDWPAERRLFFADEEGGAPLLDAVRAHPGPAAILIGPEGGFDPTERDAIRAVPSAV
                     PVSLGPRILRAETAALAAVSVWMAAAGDW"
     gene            1492..2400
                     /gene="ubiA"
                     /locus_tag="VE567_02395"
     CDS             1492..2400
                     /gene="ubiA"
                     /locus_tag="VE567_02395"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013038755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008412 - 4-hydroxybenzoate
                     octaprenyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HYZ47722.1"
                     /translation="MPSDALPDTEHESLARTGGLRPYVLLARLDRPIGWWLLFWPCAW
                     GVALAGGAFTRFDLILWMLLGAVAMRGAGCVYNDIVDRDLDAQVERTRGRPLASGAVS
                     LKAAWAWLLLLCAIGFVVLLQLPLFAALIALGSLIFVAVYPFMKRITWWPQAWLGIVF
                     SWGALVGWAAVAREASAPMLLLYAGTIAWVIGYDTIYALQDREDDALIGIRSSALRMG
                     RHVRFGVALFYTIALIFWSAAIWCIRPEPLAFVALVPAAMQLAWQVLTLRPEDGHDAL
                     VKFRSNRFAGLLVFLACATVGTGAAG"
     gene            2421..3767
                     /locus_tag="VE567_02400"
     CDS             2421..3767
                     /locus_tag="VE567_02400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008832090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase TldD-related protein"
                     /protein_id="HYZ47723.1"
                     /translation="MLSLADAQSRLSDLVSAARRAGADAADALYHGDRSTDVHVRLGG
                     LEHVDQSEGEEIGLRVFVGPRSASVSASDLAPESLRALAERAVAMAREAPEDRFAGLA
                     PEDRLLRGTAPDLDLDDQREPSPEALKAQAMAAEEAARAVAGVTNSEGASASAGRSQI
                     ALATTHGFAGGYTASAHSISASMLAERDGQKQRDGAWHWVRHLDQLDQAEAIGRLAGE
                     RAVARLGARKLPSGPMPIVFDPRVGGSLVGHFLGAIAGSAIARRTSFLLEKLGQPVFA
                     DAITILDDPHRQRGLRSRPFDGEGLPTTPTALIDAGVLTSWMLDTASARQLGLAPTGH
                     AARGVGGPPGVSASNVHVAPGGLSREALMGGVKRGLYVTELIGQGVNGVTGDYSRGAG
                     GFLIEDGKLGHPVAEVTIAGNLTNMFRRMVAADDLEFRYAVNAPTLLIEEMTVAGD"
BASE COUNT          568 a         1357 c         1338 g          664 t
ORIGIN      
        1 tcttcaccat attggcttcg tctgaatagt ccagattaac ctgaatggtg caggtgcgca
       61 gcatcatgtc gaggccaagc gagcccaccc gcggcatgtg ccgcagcatg atcgcgtagc
      121 gccccttggg catgatcggc agctcgcccc gggtcttgtc cggccacatg ccgaggccaa
      181 gaaagccaag gcccagctcg tcgcccaccc tcttgacctg ctccagatgc cggccggttt
      241 cggcgcaggt ctggtggaga ttttcaagcg gcgcacccga tagctcaagc tggccggcgg
      301 gctccaggct gatcgtgccg tccggaccgc gcagcgcgat gaccttgtcg ccttcgtgca
      361 ccggctccca gccgaagcgg gtcaggccgg cgaggaggtc gcagatgccg ccgggctcgt
      421 cataggaggg ggccctgtga tcggcggtcc gatagacgaa tttctcgtgc tcggtgccga
      481 tccgccacgc ctcgcgcggc ttttcgccgc ctgcgaagaa ttcgatcaat tggctgcgat
      541 cctggatcgg cggatcgtcc ttgccggttt cttcgcgggt gctcatcgcg gcgcatctag
      601 tgattggcac ggccgctgaa aacagctttc gcttcgctac caatcgcccg ccgcggccat
      661 ccagacgctg acggcggcga gcgcggcggt ctcggcgcgc agaatccgcg ggccgagcga
      721 gacgggcacg gcgctcggca cagcgcggat cgcatcgcgc tcggtgggat cgaagccgcc
      781 ctcggggccg atcaggatcg ccgccgggcc gggatgcgcg cgcaccgcgt ccagcaacgg
      841 cgcgccgcct tcctcgtctg caaagaacag gcgccgctcg gcaggccaat cgcggagcag
      901 cttgtccagg gcgaccatct cggccagttc cggcaaggct gtgcgctcgc attgctcggc
      961 cgcctcgatc atatgcgcgc gtagccgttc gccgttgaga cgatcgacca ccgcgcggcg
     1021 ggtcgcgacg ggaacgagcc gcgccacgcc caactcgctc gctttctcgg ccacccagtc
     1081 gatccgcccc cgcttgatgg gagccgcgca cagccacaaa tcgggcactg cctcgcgatc
     1141 gcgcagccgc gcgacaatgc gtaccaccag gtcgcgcttt ccgacgcccg ccacttcgcc
     1201 cagccattcg ccagtacgat cgtcgaaaag cttgacggtt ccgccggtct tcagccgcat
     1261 gaccgagagc agataatggg cctgcccgcc ctcgatccga agctccatcc cgtcggcgag
     1321 cggctggtcg atgaagaggc gcggcgcact gtttggcggc catgcagggg tggcgggcat
     1381 gaatccccag atgccgttcg tgtcgagcga agtcgagaca ccccgttcgc gcatcggcgg
     1441 taaagccagc ggttctcgac ttcgctcgaa ccgaacggca gaaggacaag catgccaagc
     1501 gacgcgctcc ccgataccga acacgagagc ctcgctcgaa ccggcggctt gcgaccctat
     1561 gtcctcctcg cccggctcga caggccgatc gggtggtggc tgctcttctg gccgtgcgcc
     1621 tggggcgtcg cgctggcggg cggagccttc acgcgcttcg acctgattct ctggatgctg
     1681 cttggcgccg tcgcgatgcg cggggcggga tgtgtctata acgacatcgt cgaccgcgac
     1741 ctcgatgctc aggtcgagcg cacgcgcggc cgcccgctcg ccagcggcgc ggtgtcgctg
     1801 aaggcggcct gggcctggct gttgctcctc tgcgcgatcg gcttcgtggt gctgctccag
     1861 cttccgctgt tcgctgccct gatagcgctc gggagcttga tcttcgttgc cgtctatccg
     1921 ttcatgaagc ggatcacctg gtggccccag gcctggctcg gcatcgtttt ttcctggggg
     1981 gcgctggtcg gctgggcggc cgtggcgcgg gaggcaagcg cgccgatgct gctgctttat
     2041 gccggcacga ttgcctgggt gatcggctat gacacgatct acgcgctgca ggaccgcgag
     2101 gacgatgcgc tgatcggcat ccgctcctcg gctctccgga tgggccggca tgtccgcttc
     2161 ggcgtggcgc tgttctacac gatcgcgctg atcttttgga gcgcggcaat ctggtgcatc
     2221 cggccggagc cgctcgcctt cgtcgcgctc gtcccggcag cgatgcagct cgcctggcaa
     2281 gtgctgacgc tccggcccga ggacggccat gacgcgctcg tcaaattccg ctcgaaccgc
     2341 tttgccgggc tgctcgtctt tctcgcttgc gcgaccgtgg gcactggcgc ggccggatag
     2401 ggctccctaa gtgcgaaggg atgctttccc tcgccgacgc gcaatcccgc ctttccgacc
     2461 tcgtttccgc cgcccgccgg gccggcgccg acgccgccga cgcgctgtat catggcgacc
     2521 gctcgaccga tgtgcatgtg aggcttggcg gcctcgaaca tgtcgaccag tccgaaggcg
     2581 aggagatcgg cctgcgcgtg ttcgtcgggc cgcgctcggc gagcgtctcc gcctcggatc
     2641 tcgcgcctga atcgctgcgg gcgctggccg aacgcgccgt cgcgatggcg cgcgaagcgc
     2701 ccgaggatcg gttcgcgggc ctcgctcccg aggatcggct gctacgcggc accgcgcccg
     2761 atctcgacct cgacgaccag cgggagccca gccccgaagc gctgaaggcg caggcgatgg
     2821 cggctgagga ggcggcgcgc gcggtcgccg gcgtcaccaa tagcgaaggc gcgagcgcca
     2881 gcgcgggccg cagccagatc gcgctcgcaa ccacccacgg cttcgccggc ggctatacag
     2941 cctccgccca ttcgatcagc gcgagcatgc tggccgagcg cgacgggcag aaacagcgcg
     3001 acggcgcctg gcactgggtc cgccacctgg atcaactcga tcaagccgag gccatcggcc
     3061 gtcttgccgg ggagcgggcg gtggcgcggc tcggggcgcg caagctgccg agcgggccga
     3121 tgcccatcgt gttcgatccg cgcgtcggcg gttcgctggt cggccatttc ctgggcgcca
     3181 tcgccggctc cgcgatcgcg cggcgcacga gcttcctgct tgaaaagctc ggccagccgg
     3241 tctttgccga tgcgatcacg atcctcgacg atccgcaccg ccagcgcggg ctccgctcac
     3301 gccccttcga cggcgaagga ctgccgacca cgccgaccgc gctgatcgac gccggcgtgc
     3361 tcaccagctg gatgctcgac accgcttcgg cgcgccagct cggtctggcc ccgacgggcc
     3421 atgccgcgcg cggcgtcggc ggaccgccag gcgtttcggc gagcaatgtc catgtcgcgc
     3481 cgggcggtct cagccgcgag gcgctgatgg gcggcgttaa gcgcggcctc tacgtgaccg
     3541 agttgatcgg gcagggcgtc aacggtgtga cgggcgacta tagccgtggc gcgggcggct
     3601 tcctgatcga ggacggaaag ctcggccatc cggtcgccga agtcacgatc gccggcaatc
     3661 tgactaacat gttccggcgc atggtggcgg ccgacgacct cgaattccgc tatgccgtca
     3721 atgcgcccac tcttctgatc gaggaaatga ccgtcgccgg tgactgaatc gcttctcgac
     3781 gccgttgggc aagtggccgc ggaggtcggc gcgatggcgc gccgccgctg ggagggcggc
     3841 tttcgccatt gggaaaagtc gcgtggcaat ccggtgtgcg aagtggacct cgaggctgat
     3901 gcgctgctgc gcgaacggct gagggag
//
LOCUS       DASQVK010000116         3223 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_7129, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000116 DASQVK010000000
VERSION     DASQVK010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7129"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..637)
                     /locus_tag="VE567_02405"
     CDS             complement(<1..637)
                     /locus_tag="VE567_02405"
                     /inference="COORDINATES: protein motif:HMM:NF016906.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HYZ47724.1"
                     /translation="MSYITVTTDTELAAAISKAVGGDTVYLAPGSYTSLSLANKAYTT
                     PVTFTSLDASRPAHIDGISINNAQNATLSHLDVGRALKSTELDHTALSQIRGSSNITL
                     DGLKLHGSLDGNPLNDGTLLTVAGSKGITISNSEFTEATRGATFGTSSNLTLLNNNVH
                     MMRTDGFDFASVQHVLVQGNRIGGFMIKAGDHPDAIQFWTSGTTVASSDITI"
     gene            complement(739..1959)
                     /gene="phaZ"
                     /locus_tag="VE567_02410"
     CDS             complement(739..1959)
                     /gene="phaZ"
                     /locus_tag="VE567_02410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoate depolymerase"
                     /protein_id="HYZ47725.1"
                     /translation="MLYDAYEWQRSLLAGASAFANAGAEFLSNPANPMAYFGGGPIVA
                     SALEVFAHAAAPRGKPQFGLHSTIVDGRKVVVEEEILLRKPFGQLKRFRREGIADGPK
                     LLIVAPMSGHYATLLRGTVERMLPGHDVYITDWRDAKLVPLSEGSFDLEDYVDYLIEF
                     LEAIDPGAHVLAVCQPSVPSFAAAALMSAGQHPCRPKTLTMMGGPIDTREAPTAVNTL
                     ATQRPHAWFQQNVIATVPFTYPGAGRKVYPGFLQLAGFMTMNLGDHLMSHFEMFKHLV
                     QGDGESADRTKEFYDEYRSVCDMTAEFYLETVDLVFQRHALPKGEWIHRGERVDPGAI
                     KDVALLAIEGERDDISGIGQTKAALTLATNLAEKDKKYLLAKGVGHYGIFNGSKWRER
                     IATVVEQWIQSHGR"
     gene            2086..>3223
                     /locus_tag="VE567_02415"
     CDS             2086..>3223
                     /locus_tag="VE567_02415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HYZ47726.1"
                     /translation="MAKTADAEPRTRKLGNLAMVWRFAIRYPGRIACAALALVVASSA
                     TVAIPYGFKRVIDRGFSSGGGDPAAVSSSFFYLLMIVGVLAIATAFRFYFVSWLGERV
                     VGDIRRAVHANLVTLAPRFFEENRPSEIASRMTSDTTVIEQIVGTTVSVALRNLFTGV
                     GGVVYLFVLSPKLAGSLLLGIPLVVVPIVTMGRRVRNFSRASQDRIADVGAIVAETLG
                     AMKIVQAFGQEEREKSRFAAAVEATFGVAKRRIFIRAIMTAVVIALIFGSITLVLKEG
                     VSDVAAGRISGGSIAAFVLTGGLVAGAFGALTEVYGDLLRGAGAAGRLAELLQARPEI
                     TAPARPAPLPVPPLGRLSFEHVSFHYPTRPDTSALHDFSLDVAPG"
BASE COUNT          575 a         1007 c          984 g          657 t
ORIGIN      
        1 ggatcgtgat gtcggacgaa gcgacggtcg tgccgctggt ccagaactgg atagcatccg
       61 gatgatcgcc agccttgatc atgaaaccac cgatccggtt gccctggacc aggacatgct
      121 gcaccgaggc gaagtcaaac ccgtcggtgc gcatcatgtg cacattgttg ttcaacaagg
      181 taagattgct tgaagtgccg aaagtggctc cgcgagtagc ttcggtgaac tccgaattgc
      241 tgatcgtaat gcccttgctg cccgcaacgg tcagcagcgt cccgtcgttc agcggattgc
      301 cgtccaggga gccatgcagc ttcaggccgt cgagcgtgat gttgctggag ccccggatct
      361 ggctgagcgc ggtgtgatcg agctccgtgc tcttgagcgc gcgacccaca tcgagatgcg
      421 agagagtcgc attctgggcg ttgttgatgg aaattccgtc gatgtgcgcc ggtcgcgacg
      481 cgtcaaggga ggtgaaagtg accggcgttg tgtatgcttt attagcgagc gacaggctgg
      541 tgtacgagcc cggcgccaga tagacggtgt cgccccccac agccttgctg atggcggccg
      601 ccaattccgt atcggtcgta acagtgatgt aactcatgat tccccgctcc atttgcgagc
      661 ggggaattaa gagcggagtc tatctggacg tcttaatccg catggttaat ttacgttcaa
      721 tctttcgaat tcttattttt acctaccgtg actctggatc cattgttcca ctactgtagc
      781 gattctctcg cgccatttgc ttccgttaaa tatcccataa tggcccacgc cttttgccaa
      841 caggtacttt ttgtccttct cagccagatt cgtggcgaga gtcagcgcgg ccttggtctg
      901 gccgataccc gagatatcgt cgcgctcacc ctcgatcgcg agaagcgcca catccttgat
      961 tgcgccggga tcgacgcgct cgccacgatg tatccactcg cccttaggca gtgcgtggcg
     1021 ctgaaagacg agatcgaccg tctccaagta gaactccgca gtcatgtcgc agacggaacg
     1081 atattcatcg tagaattcct tggtgcgatc agcgctttcg ccgtcacctt gaacaagatg
     1141 cttgaacatc tcgaagtggc tcatcaggtg atcgcccaga ttcatggtca tgaacccggc
     1201 cagctgcagg aagccgggat aaacttttcg gccagcgccc ggataggtga agggcactgt
     1261 cgcgatcaca ttctgctgaa accaggcatg cggccgctgc gtggccaagg tgttcaccgc
     1321 ggtcggggct tcgcgggtgt cgatcgggcc gcccatcatc gtcagagttt tcggacggca
     1381 gggatgttgg cccgccgaca tgagcgctgc cgcggcaaag ctcggcacgg acggctggca
     1441 aacggcgagc acgtgcgcac cggggtcgat cgcctccaga aactcgatca gataatcgac
     1501 ataatcttca agatcgaagc tgccttccga aagcggcacg agcttcgcgt cgcgccaatc
     1561 cgtgatgtac acgtcatggc cgggcagcat ccgctcgacc gtgccccgca gcagcgtcgc
     1621 gtaatggccc gacatcggcg ccacgatgag cagcttgggc ccgtccgcta taccttcgcg
     1681 ccggaaccgc ttcagttgcc cgaatggctt gcggagcagg atctcttcct cgacgaccac
     1741 cttacggcca tcgacaatcg tggaatgaag cccgaattgc ggcttgccgc gaggcgccgc
     1801 agcgtgcgcg aacacctcaa gcgccgaagc gacgatgggc ccgccgccga aataggccat
     1861 tggattggca ggattcgaga gaaattcagc cccggcgttg gcgaaagcgc ttgccccggc
     1921 cagcagcgat cgctgccatt catatgcatc gtataacatc ggcgttccta ctagcgccca
     1981 cccctgaacg cttcatagac gatctggatc atttcccgcg tgcaagcaac gagaagctgc
     2041 caacggcgtg ttgagggcgc gcgaccagcc tgctacctgc ccgcaatggc gaaaacggcg
     2101 gatgcggaac ccaggactcg caagctcggc aatctggcga tggtctggcg gtttgcgatc
     2161 cgatacccgg gccgcatagc gtgcgccgcg ctcgcactgg tcgtcgcatc gagcgcgacg
     2221 gtcgcgattc cgtacggatt caagcgcgtc atcgatcggg gctttagcag tggcggcggc
     2281 gatcccgccg cggtctcctc ctcctttttc tacctgctga tgatcgtcgg cgtgctcgcg
     2341 atcgcaaccg ctttccgctt ttacttcgtg tcgtggctgg gtgagcgcgt ggtcggcgat
     2401 attcgccgcg cggtccacgc caatctggtc acgctcgccc cgcggttttt cgaagaaaat
     2461 cggccctcag aaatcgcctc gcgcatgacg tcggacacga cggtcatcga gcaaatcgtc
     2521 gggaccaccg tttccgtcgc gctgcgcaac ctgttcacgg gcgtcggcgg cgtcgtttac
     2581 ctcttcgtcc tctcgcccaa gctcgcagga tcgttgctgc tcggcattcc cctggtcgtg
     2641 gtgcccatcg ttacgatggg acgccgcgtg cgcaatttct cgcgcgccag ccaggaccgg
     2701 atcgccgatg ttggcgcgat cgtggcggag acgctcggcg caatgaagat cgttcaggcg
     2761 ttcggccagg aagagcgcga aaagagccgc ttcgccgccg cggtcgaggc gacgttcggc
     2821 gtcgccaagc gccgtatctt catccgcgcg atcatgaccg cggtcgtgat cgccctgatt
     2881 ttcggctcga tcactctggt gctgaaggaa ggcgtgagcg acgtcgccgc cggccggatc
     2941 agtggcggct cgattgccgc attcgtgctg acgggcggcc tggtggcggg cgcgttcggc
     3001 gcgctcaccg aagtctatgg cgacctgctg cgcggcgccg gtgcggcggg gcgactggcc
     3061 gagttgctcc aggcgcggcc cgagatcacg gcgcctgccc gcccggctcc cctccccgtc
     3121 ccgccgctgg gccggctcag cttcgagcat gtctccttcc actacccgac ccgaccggac
     3181 acgagtgcgc tgcacgattt ctcgctggac gtcgcgccgg gcg
//
LOCUS       DASQVK010000117         4593 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_228674,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000117 DASQVK010000000
VERSION     DASQVK010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4593
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228674"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..273)
                     /locus_tag="VE567_02420"
     CDS             complement(<1..273)
                     /locus_tag="VE567_02420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYZ47727.1"
                     /translation="MSLGQQLAPHLPFLRRYARALTGSQQHGDSYVKATLEAIVQAPD
                     QFPRDVDPRLGLYRTFQAIWGSVNVANDDEPAGLGGDDHEAIARARL"
     gene            498..665
                     /locus_tag="VE567_02425"
     CDS             498..665
                     /locus_tag="VE567_02425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006967171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016989 - sigma factor antagonist activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NepR family anti-sigma factor"
                     /protein_id="HYZ47728.1"
                     /translation="MLVPNAKRKAERKTAKPKRTNISDVSVGQALRTVYEQTAGEPIP
                     QEMLDLLGKLK"
     gene            675..2276
                     /locus_tag="VE567_02430"
     CDS             675..2276
                     /locus_tag="VE567_02430"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF019205.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HYZ47729.1"
                     /translation="MASAAFARAVTAGMFDRFSRLSAGYRLIVLLSLALLPLGILAVL
                     SSLQISRSADLERRATARIAAAESARRLGAQLAIDGTALRSAANLLERGGDEAQICAR
                     TLSVLATSFSQPTEFAIVTRTGRRVCGSERIAVARVNPDHAGDMAAMLSAKGLLMLLP
                     SDTHAFVGVASYPRVQLAQLLRPADFTVPYSLTLRHERELLRVIEHYRPRALDRHETV
                     TTAVPGAPLSLMFAVRSAPRTPAEVLTMLVPIVMWLVAIAIAWLVFNRLVIGPLGQLR
                     ANIAAYQPGEIAQPLHRMTIPAREIEELGQTFQTISRTVAAHEEELAAGLVRQTRLTR
                     EVHHRVKNNLQVVSSLINLHARASQSPEANSAYATIGRRVDALAVVHRNHYAELEENR
                     GVNLRSLLGELAANLRATAPAEARRLAILIDVPAVHIGQDTAIPIAFLTTELVELAMA
                     IDPSAAVRVSVLSLAEPDRACLVVGSAALQDSEPLLRLLTERYGRVLEGLSRQLRSAL
                     ERDTAAGTFRVCFPLAADAARADKK"
     gene            2532..2666
                     /locus_tag="VE567_02435"
     CDS             2532..2666
                     /locus_tag="VE567_02435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006955807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="entericidin EcnA/B family protein"
                     /protein_id="HYZ47730.1"
                     /translation="MVRSFVALALMAGALVVSGCNTVSGAGKDLQSASKDTKDAINGR
                     "
     gene            complement(2681..3451)
                     /gene="tatC"
                     /locus_tag="VE567_02440"
     CDS             complement(2681..3451)
                     /gene="tatC"
                     /locus_tag="VE567_02440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HYZ47731.1"
                     /translation="MKDIDDTRAPLIEHLVELRRRLLWSIAALAAAFGACLYFARPIF
                     AFLVQPLLKAGQGRLIYTDVFEAFFVNVKVAFFAAIMVAFPVMATQLWKFVAPGLYKR
                     EKQALLPFLVMTPVLFAAGAALAYYVAMPIALHFLLSFQGNIGGIQQEALPGVGNYLA
                     FVTKFMFGFGVAFLTPVLLMLLERAGIVTRVQLVRGRRYAIVIAFVVAAVLTPPDIVS
                     QLLLATPLVLLYEFALIAIWFTEKRRSRQASSTDAEEA"
     gene            complement(3448..3792)
                     /gene="tatB"
                     /locus_tag="VE567_02445"
     CDS             complement(3448..3792)
                     /gene="tatB"
                     /locus_tag="VE567_02445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase protein
                     TatB"
                     /protein_id="HYZ47732.1"
                     /translation="MFDIAPTELLLCAIVALVVIGPKDLPKAMRVLGYWVGRVRGVAR
                     HFRSGIDNMIREAELAEMEKKWAEENARIMREHPNVDPPQMLPLPEATPPAAPEAPPE
                     TPSTPAAREGER"
     gene            complement(3959..>4593)
                     /locus_tag="VE567_02450"
     CDS             complement(3959..>4593)
                     /locus_tag="VE567_02450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HYZ47733.1"
                     /translation="ASWGSAELQDLLERASLCSMKKGEVLLHQGDHGDYLIILLDGTI
                     RVSMVASNGREIILDYLEPGSVLGEIALLDGGERTASVTALGEGKYLKLGAPAFREVL
                     EKHPSVAWRLLREMARRLRNANNTIESDRAYASGPRLARSLQRLVQNGAQGVALRLSQ
                     SELGAFAGISRENINRQLGAWADAGIIALEHGRVRVLDMDVLEEIAMAAE"
BASE COUNT          833 a         1548 c         1449 g          763 t
ORIGIN      
        1 aagccgcgcg cgggcgatcg cttcgtgatc gtcaccgccg agcccggccg gctcatcgtc
       61 gttggcgaca ttgacggagc cccagatcgc ctggaacgtc ctgtaaaggc ctagcctcgg
      121 atcgacgtcg cgcgggaatt ggtccggcgc ctggacgatc gcttcgagcg tcgccttcac
      181 ataggaatcg ccatgctgct ggctgccggt aagggcccgg gcatagcggc gaagaaaagg
      241 cagatgcggg gccagttgtt gaccaagcga catgatcggc aagactccaa gcttcctgtt
      301 cccgtccatt tggaatgagt cgttgcgagc tgacaagccc cctcccccag cgccggacgg
      361 gatgaaaaaa tctggcgcgg gggtggaaca aacaaaacgc aattttgttt cacgaccggc
      421 gttggagagc tattgcgccc cgcgtcacgc gaatcaaatt ccttaagcaa gtcggcgaga
      481 ccgattgttg gggggcagtg ttggtaccaa acgccaagcg caaggcggag cggaaaaccg
      541 cgaagccgaa acggacgaac atatcggacg tgagcgtcgg ccaggcgctc cgcaccgtct
      601 atgagcagac cgccggggaa ccgatcccgc aagagatgct ggacctgctc ggcaagctca
      661 aatagttggg gccgatggcc agcgccgctt tcgcgcgcgc ggtgacggcg ggtatgttcg
      721 accggttctc ccggctgtcc gccgggtacc gcctgatcgt cttgctgtcg ctcgccctgc
      781 tgccattggg gatcctggcg gttctttcgt cgctgcaaat ttcgcgcagc gccgatctgg
      841 agcgacgcgc gacggcgcgg atcgccgccg ccgagagcgc gcgccggctg ggcgcgcagc
      901 ttgcgatcga cgggaccgcg ctccgttcag ccgccaatct gctcgaacgc ggcggtgacg
      961 aggcgcagat ttgcgctcgc acattgagcg tgctcgccac gtcattcagc caaccgaccg
     1021 agttcgcgat cgtcacgcgc accggccggc gagtgtgcgg gtccgaacga atcgctgtcg
     1081 cccgcgtcaa tccggaccac gccggcgaca tggccgcgat gctgtcggcc aaggggctgc
     1141 tcatgctctt gccgagcgat acgcacgcat ttgtcggcgt cgcttcctat ccgcgcgttc
     1201 agctcgcgca gctcctgcgc cccgcagatt tcacggtgcc ttatagcctt acgctccgcc
     1261 atgagcgcga attgctgcgg gtcatcgagc attaccgccc gcgcgccttg gaccggcacg
     1321 agacggtgac gacagccgtg ccgggcgcgc cgctcagcct gatgttcgcg gtgcgcagcg
     1381 ccccgcgcac gccggccgag gtcctgacga tgttggtgcc gatcgtgatg tggctggtcg
     1441 cgatcgcgat cgcctggctg gtgttcaacc ggcttgtcat cgggccgctc ggacagctcc
     1501 gcgcgaacat cgccgcttac cagcctggcg agatcgccca gccgctgcac cgcatgacca
     1561 tcccagcccg cgagatcgag gagctgggcc aaaccttcca gacgataagc cgcaccgtcg
     1621 cagcgcacga ggaagagctg gcggcgggcc tggtccgtca gaccaggctg acccgcgagg
     1681 tccatcaccg cgtgaagaac aatcttcagg tcgtctccag cctcatcaac ctccacgccc
     1741 gcgcctcgca gagcccggaa gcgaattccg cctatgccac gatcggccgc cgggtcgatg
     1801 cactcgccgt cgtccaccgc aaccattatg ccgagctcga ggaaaatcgc ggcgtcaacc
     1861 tgcgctccct gctcggcgaa ctcgccgcca acctgcgggc gacagcaccc gccgaagcga
     1921 ggcgcctggc gatcctgatc gatgtgcctg ccgtccatat cgggcaggat accgccattc
     1981 ccatcgcgtt cctgaccacc gagcttgtcg agctggcgat ggcgatcgac ccatcggctg
     2041 cggtccgcgt ctccgtatta tccctggctg agcccgaccg cgcctgcctg gtggtgggat
     2101 cggccgcgct ccaagacagc gagccgctgc tgcgtctcct taccgagcgc tatggccgcg
     2161 tgctcgaagg cctgtcgcgc cagcttcgca gcgcgctgga gcgcgacacc gcggcaggga
     2221 cgttccgcgt ctgcttcccg ctggcggcgg acgccgcgcg cgccgacaaa aaataattcg
     2281 aaaaaagttc gggctagcgg gaactgtgcc gccgacgggg cgttctggcg agcggatagt
     2341 gaccttttgc ccccccgctc tcgctatcca agacaatggg cccggatacg ccagcctccc
     2401 cccggtggcg catccgggcc caaatttgtt tggcacctca aagccttgcc atctccggcg
     2461 cacggaacag ctcgcccgtt caaacattca tgctctgcgc acctcgggtc gcgcccagga
     2521 ggagaaacaa tatggttcgc tcgttcgtcg cgctggcgct catggccggc gctttggtgg
     2581 tttccggctg caacaccgtg tccggcgccg gcaaggatct tcagtccgcc agcaaggaca
     2641 ccaaggacgc cattaacggc cgctagagcg gtaaaagcga tcaggcctct tcggcgtcgg
     2701 tcgaagaggc ctgcctgctg cgtcgctttt ccgtaaacca gatcgctatc agcgcgaact
     2761 cgtacagcag gaccaatggc gtcgcgagca gcaattgcga aacgatgtcg ggcggcgtca
     2821 gcaccgcggc gaccacgaac gcaatcacga tcgcatagcg ccggccgcgc acgagttgca
     2881 cgcgggtgac gatcccggcg cgttccagca gcatcagcag caccggcgtc agaaacgcaa
     2941 cgccgaagcc gaacatgaat ttggtaacga aggcgagata attgccgacg cccggcagag
     3001 cctcttgctg aatccccccg atatttcctt gaaagctcaa gaggaaatgc agcgcgatgg
     3061 gcattgcgac atagtaagcg agcgccgctc cggccgcgaa cagcacggga gtcatgacca
     3121 gaaagggcag cagcgcctgc ttttcacgct tgtagagtcc cggcgccacg aacttccaga
     3181 gctgcgtcgc catcaccgga aaggcgacca tgattgccgc gaagaacgcc actttcacgt
     3241 tcacgaaaaa ggcttcgaac acatcggtat agatgaggcg gccttgcccc gccttcagca
     3301 gcggctggac cagaaaagcg aagatcgggc gcgcgaaata aaggcaggcg ccgaatgcgg
     3361 cggcaagcgc ggctatggac cagagcagcc gccgcctgag ctcgaccaaa tgctcgatga
     3421 gcggcgcgcg cgtgtcgtcg atatccttca ccgctcgccc tcccgggcgg caggcgttga
     3481 cggcgtttcc ggcggcgcct caggcgcagc tgggggcgtt gcctcgggca gcgggagcat
     3541 ctgcggcgga tccacgttcg gatgctcgcg catgatccgc gcattctcct ccgcccattt
     3601 cttttccatc tcggccagct ccgcctcgcg gatcatattg tcgatgcctg agcggaaatg
     3661 gcgcgcgacg ccccgcacgc ggccgaccca atagccgagc acgcgcattg ccttgggcag
     3721 gtccttgggg ccgatgacca ccagcgcgac aatggcgcac aacaacagct cggtgggggc
     3781 aatatcgaac attgcgcgcc gtctaggcga tttgccgggc agccggaagg ccgtatgcgc
     3841 ccagccggtc gcgagaaatc gggacggccc gccccctgca cgggccgccc ctgccctgga
     3901 agcgggcgat ggtggtcacg gccaggccaa agggtcgcct gaaccggacg aacggccgct
     3961 actcggccgc catcgcgatt tcctccagaa cgtccatgtc gagcacgcgt acgcgcccgt
     4021 gttccaacgc aataatgccg gcatccgccc aggcgccgag ctggcggttg atgttttcgc
     4081 ggctgatccc ggcaaaggcg ccgagttcgc tttggctgag ccgcagcgcg acgccttgtg
     4141 cgccgttctg gaccagccgc tggagcgagc gcgccagccg cggaccggag gcgtaagcgc
     4201 gatcgctctc gatcgtattg ttggcgttgc gcaaccggcg cgccatttcg cgcagcagcc
     4261 gccaggctac cgacgggtgc ttttccagca cttcgcggaa cgccggcgcg ccgagcttca
     4321 gatatttgcc ctcgcccagt gcagtgacgc ttgccgtacg ctcgccccca tccagcaggg
     4381 cgatctcgcc gaggacgctg ccgggctcca gatagtcgag gatgatctcg cgcccattgg
     4441 acgcgaccat ggacacgcga atcgtgccgt cgagcaggat gatgaggtaa tcgccgtggt
     4501 cgccctggtg cagcagcacc tcgccctttt tcatcgaaca gagcgacgca cgctccagaa
     4561 ggtcctgcag ctccgccgag ccccatgaag cga
//
LOCUS       DASQVK010000118         2863 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_7213, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000118 DASQVK010000000
VERSION     DASQVK010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2863)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2863)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2863
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7213"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..298)
                     /locus_tag="VE567_02455"
     CDS             complement(<1..298)
                     /locus_tag="VE567_02455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008995711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein"
                     /protein_id="HYZ47734.1"
                     /translation="MDISSYVLLSHEQALRRRMDVVANNMANTSTVGFRREQPVFREY
                     VEQSPETPVETGRNVSFVLDYGAVHDTRAGAFQATGNPLDVMIDGPGYLTIEAPG"
     gene            433..954
                     /locus_tag="VE567_02460"
     CDS             433..954
                     /locus_tag="VE567_02460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010214913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated FliL family
                     protein"
                     /protein_id="HYZ47735.1"
                     /translation="MAAAQQVEASESDDAPTEVKPVAPASAGRDKKRLIAIGAAAAVL
                     LCGGVGAAYAVMGGREAPAGAYSAGTQIPDQFVDIPEMTVNLRSADGTPRFLRVHLVL
                     VASSAGRKDEISKKLPLVIDAYQPFLRELRPEDLAGSAAAFRLKEEMLIRANQELGDG
                     AVSDVLIQDLVQQ"
     gene            951..1958
                     /gene="fliM"
                     /locus_tag="VE567_02465"
     CDS             951..1958
                     /gene="fliM"
                     /locus_tag="VE567_02465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010407186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HYZ47736.1"
                     /translation="MTDNFGFDLPDVSSTTIGDDQALDQADIDALFGDAAAPPPPKSG
                     LRAVIESDVINRERLPMLEVVCDRMIRSFATNMRNLTSDAIEVSLEETNTVRFGEFMN
                     RVPLPAMFGVFRIQEWENFGIVAVDAPLIYSVVDALLGGRGGNHGLARFEGRGFTTIE
                     TSLVTRMVELALSDFATSFEPIAPIAIKLERIETSPRFAAIASPSNVTAVSTFRVEME
                     GRGGRLSFLLPYATLEPVRDKLLQRFMGEKLGRDVIWETHMRSEIQRTEISLEAVLAE
                     RMLPLCDVHSLELGQTLSLNRHADSPIEITSGGVRLGRAQLGQRNNNIALRLIGDLSK
                     D"
     gene            1963..2319
                     /locus_tag="VE567_02470"
     CDS             1963..2319
                     /locus_tag="VE567_02470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008995714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6468 domain-containing protein"
                     /protein_id="HYZ47737.1"
                     /translation="MGFATFVNIITVILCLAVLVQSVRMMRSLAAVKEAALPQMVQAL
                     DAATARAGQVLAELKEMLRTEGAANARALAEAQEIRDELGVMIGIANATADRLLAAAS
                     SKAAEPDEEMIEEPVA"
     gene            2316..2852
                     /locus_tag="VE567_02475"
     CDS             2316..2852
                     /locus_tag="VE567_02475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47738.1"
                     /translation="MKLRPSLLLLTAAAAGASVLANSVSAADPTPAVPQTRLGASIAQ
                     DLSQQDREVARRRRALELREQAAQAAEQRLQANLQGPPAAAGARPGAPADPNEDRYAD
                     LARIYQAMRPNRAAAVFEQLEMGVQVEVARRMRERSTALILASMSAQGAAALTMAMAR
                     MPQSQMAVTPQPGQMRTR"
BASE COUNT          521 a          907 c          962 g          473 t
ORIGIN      
        1 cgcccggcgc ctcgattgtg aggtagcctg gtccgtcgat catcacgtcg agcggattgc
       61 cggtcgcctg gaacgcaccc gcccgcgtgt cgtgcacggc gccatagtcg agtacgaacg
      121 agacattgcg cccggtttcg accggggttt ccgggctctg ctccacatat tcgcggaaca
      181 ccggctgctc gcggcgaaac ccgacggtgc tggtattcgc catattgttg gcgaccacgt
      241 ccatgcgccg ccgcagcgcc tgttcatggc tcagaagcac gtaggaagag atgtccattc
      301 gctcgctccg aaaatttcgc ggggccgggc actaggcaga aattgccggt ctccgcgtct
      361 ataataggat gaaaatcaac cattcggctg ccgcgccctg gatttgggag cgcgccgaat
      421 agagaggtca agatggcggc agcgcaacag gttgaggcaa gcgagagcga cgatgcgcca
      481 acggaggtga agccggtcgc gccggcgagc gcggggcgtg acaagaagag gctaatcgcg
      541 atcggcgcgg cggccgctgt tctgctctgc ggcggcgtag gcgcggccta tgcggtgatg
      601 ggcggcaggg aggcgccggc cggcgcgtat tcggccggga cccagattcc cgaccagttc
      661 gtcgatatcc cggagatgac ggtgaacctg cgctctgcgg acggcacgcc caggttcctg
      721 cgcgtgcatc tggtgctcgt cgcctcttcg gccggccgca aggacgagat cagcaagaag
      781 ctgccattgg tcatcgacgc ctatcagccg ttcctgcgcg aacttcggcc cgaagatctc
      841 gccgggtctg ctgcggcctt taggctgaag gaagaaatgc tgatccgcgc caaccaggag
      901 ctgggcgacg gcgccgtctc cgacgtgctc atccaggacc tggttcagca atgaccgaca
      961 atttcggttt cgacctgccg gatgtttcgt cgacgacgat cggcgacgat caggcgctgg
     1021 accaggccga catcgatgcg ctgttcggcg atgccgccgc gccgccgcct ccgaaaagcg
     1081 gcctccgcgc ggtaatcgag tccgacgtga tcaatcgcga gcggctgccg atgctggaag
     1141 tcgtgtgtga ccgcatgatc cgaagcttcg cgacgaacat gcgcaacctg acctccgacg
     1201 cgatcgaagt aagcctggag gaaacgaaca ccgtccggtt cggcgagttc atgaaccgcg
     1261 tgccgctgcc ggccatgttc ggcgtgttcc ggatccagga gtgggagaat ttcgggattg
     1321 tcgccgtcga cgccccgctc atctattcgg tcgtcgatgc gctgttgggc ggccgcggcg
     1381 gcaatcatgg gctcgctcgc ttcgagggtc gcggattcac gacgatcgag acctcgctgg
     1441 tcacgcggat ggtggaactg gcgttgtcgg acttcgcaac ctcgttcgag ccgatcgcgc
     1501 cgatcgcgat caagttggaa cggatcgaaa ccagcccgcg cttcgctgcc atcgcgagcc
     1561 ccagcaacgt caccgccgtg tcgacgtttc gcgtcgagat ggaggggcgc ggagggcggc
     1621 tgagctttct gctgccctac gctacgctag agccggtccg cgacaagctg ctgcagcgct
     1681 tcatgggcga gaagctgggc agggacgtca tctgggaaac gcatatgcgc tccgaaatcc
     1741 agcggacgga aatcagcctc gaagccgtgc ttgcagaacg catgctgcct ttatgcgacg
     1801 tccattcgct tgagcttgga cagaccctgt cgctcaatcg gcacgccgac agcccgatcg
     1861 agattaccag cgggggcgtg cgcctcggcc gggcacagct cgggcagcgc aacaacaaca
     1921 tagcacttcg cctgatcggc gaccttagca aggactgacg ccatgggctt cgccactttc
     1981 gtgaacatca tcacggtcat cctctgtctc gctgtcctcg ttcaaagcgt acgcatgatg
     2041 cgaagccttg cagccgtgaa ggaggcggcg ctgccgcaga tggtgcaggc gctggacgct
     2101 gcgaccgcac gtgcgggcca agtgctcgcc gaactcaagg agatgttgcg cacggagggg
     2161 gcggccaatg cgcgtgcgct tgccgaagct caggagatcc gggatgaact cggggtaatg
     2221 atcggcatcg ccaacgcaac ggccgatcgc ctgcttgctg ccgccagcag caaggccgcg
     2281 gagccggacg aggaaatgat cgaggagcca gtcgcgtgaa gctgcgcccc tccttactcc
     2341 tgttgacggc ggcggcggcg ggcgcttcgg tcctcgccaa cagcgtcagc gcggccgatc
     2401 cgacaccagc cgtgccgcag actcggctgg gggcctcgat cgcgcaagac ctctcccagc
     2461 aggaccggga agttgcgcgg cgccggcgcg cgctggaatt gcgcgagcaa gccgctcagg
     2521 cggccgagca gcggctgcag gcgaacctgc aaggcccgcc ggcggcggcg ggagcgcggc
     2581 ccggggcgcc cgccgatccg aacgaagacc gctacgccga ccttgcgcgc atctatcagg
     2641 cgatgcgccc gaaccgcgcc gcagcggtgt tcgagcaact tgagatgggg gtgcaagttg
     2701 aagtcgccag gcgcatgcgc gaacgatcga cggcgctcat tctcgccagc atgtcggcac
     2761 agggcgctgc ggcgctgaca atggcgatgg cccgcatgcc gcaaagccag atggcggtca
     2821 cgccgcaacc cggccaaatg cggacccggt aaaagccgct tag
//
LOCUS       DASQVK010000119         2952 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_260562,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000119 DASQVK010000000
VERSION     DASQVK010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2952
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260562"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..524
                     /locus_tag="VE567_02480"
     CDS             <1..524
                     /locus_tag="VE567_02480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004209199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="exonuclease domain-containing protein"
                     /protein_id="HYZ47739.1"
                     /translation="FLAGQRLFRDVCEELLDFLEDSPLVAHNAAFDFAFLNFELGECG
                     RLHIPRSRMVDTLSLSRTKFPGAKHSLDALCARFGVDRSHRIKHGALLDAQLLAQCYV
                     ELTGGRQIGLSLVEDAAPAAAPRQPVQAYDITRPVRPPRPHAATPDELERHAAFIAQL
                     VDPIWNIGTAAAA"
     gene            582..1160
                     /gene="raiA"
                     /locus_tag="VE567_02485"
     CDS             582..1160
                     /gene="raiA"
                     /locus_tag="VE567_02485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_component: GO:0022626 - cytosolic ribosome [Evidence
                     IEA];
                     GO_function: GO:0045182 - translation regulator activity
                     [Evidence IEA];
                     GO_process: GO:0009386 - translational attenuation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HYZ47740.1"
                     /translation="MDVRVSGHQVDVGEVLRSHAEARLQATNGKYDARAISATVTFGK
                     GPHDHRFDCEIILYVPNGVVLKGSSRAIEAQPAFEDALAKIEKQMRRYMRRLRGRNGH
                     AAGEVAFAEAGYTVFSLPEDEQEEDELPDNPPIVAETRVDVPEASVSDAVMMLDLRNT
                     NALLFRNSATGTFNMVYRRGDGTIGWVEPQRA"
     gene            1229..1693
                     /locus_tag="VE567_02490"
     CDS             1229..1693
                     /locus_tag="VE567_02490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HYZ47741.1"
                     /translation="MDFTQFLDAGAVEADLAVANKKALFQTLGALAERRLGLAAREVT
                     DRLLERERLGTTGFGGGVAIPHGRLAGLETIRAAFVRLEKPIDYGAIDDLPVDLVFML
                     VSPEDAGADHLKALAQVSRRLRDRAFVAKLRGAGSTDALYALFASAETRDAA"
     gene            1683..2141
                     /locus_tag="VE567_02495"
     CDS             1683..2141
                     /locus_tag="VE567_02495"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HYZ47742.1"
                     /translation="MPPETGAEAHFRALESLYAAAPINKLFRSRLEIVEEGFARIMFD
                     VDAQLHHAAGAMHGTAYFKMLDDAAFYATNSLVTDRFLLTTAFNLLFTRPIVEGPVVA
                     EGRWVSGRRRVFVADARLIGPDGEEAARGTGTFMRSRIPLSSLKGYAFPA"
     gene            2165..2482
                     /locus_tag="VE567_02500"
     CDS             2165..2482
                     /locus_tag="VE567_02500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011543104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1491 family protein"
                     /protein_id="HYZ47743.1"
                     /translation="MTVDALMRRVRAEGGFATLLARGDETSGAIVLVCAERGAVKALL
                     ERTLDLEGRYRWTRCGPDEVESAATRDSYLQRRRDRDPDLWLIELDIADAERFAAETM
                     SFR"
     gene            2650..>2952
                     /locus_tag="VE567_02505"
     CDS             2650..>2952
                     /locus_tag="VE567_02505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47744.1"
                     /translation="MSFILRAATLAAMTFCTIYGASSAPSLAETVTSTVSAFSNEAQT
                     APVPAVTVEPLPAVAPPSIDDAVISRAPAEEPEAPKSLAQLVAMQDIPARLDHETEC"
BASE COUNT          494 a          980 c          970 g          508 t
ORIGIN      
        1 cgtttctggc cggccagcgg ctcttccgcg atgtgtgcga ggaactgctc gatttcctcg
       61 aggacagccc gcttgtcgcg cacaatgcgg ccttcgattt cgccttcctg aatttcgagc
      121 tcggtgaatg tggccggctc catatcccgc gctcgcgcat ggtcgacacc ctgtcgctgt
      181 cgcggacgaa attcccgggc gccaagcata gcctcgatgc gctgtgcgcg cgcttcgggg
      241 tggatcgcag ccaccggatc aagcacggcg cgctgctcga cgcccaattg cttgcgcaat
      301 gctatgtcga gctgaccggc ggccggcaga tcggcctgtc gctcgtggaa gatgcggcgc
      361 ccgccgcagc gccgcgccag cccgtccagg cctatgatat cacgcggccc gtccggccgc
      421 cgcgccccca cgcggcgacg cccgacgagc tcgaacggca cgcggccttc attgcccagc
      481 tcgtcgatcc tatctggaat attggaacgg cggcggctgc gtgaggttga cgcttctagg
      541 ggcggccttc tagacgcccc gccctgacgg aggaggctca gatggacgtg cgcgtttccg
      601 gacaccaggt cgatgtgggc gaggtgcttc gcagccatgc ggaagcccgg cttcaggcga
      661 ccaacggcaa atatgatgcg cgcgcgatct ccgcgaccgt cactttcggg aaaggtccgc
      721 acgaccaccg cttcgactgc gagatcatac tctatgtacc gaacggcgtg gtcctgaagg
      781 gcagcagccg cgcgatcgag gcgcagccgg cgttcgagga cgcgctcgcc aaaatcgaaa
      841 agcagatgcg ccgctacatg cgccgcctgc gcggccgcaa cggccatgcg gctggcgagg
      901 tcgcattcgc cgaggccggc tataccgtgt tcagcctgcc cgaggacgag caggaggagg
      961 acgagcttcc cgacaatccg ccgatcgtgg cggaaacccg cgtcgacgtg cccgaggctt
     1021 cagtctccga cgcggttatg atgctggacc tgcgcaacac caacgcattg ttgttccgca
     1081 acagcgcgac cggcactttc aacatggtct atcgacgagg cgacggcacc atcggctggg
     1141 tcgagccgca gcgcgcctga acgtaccaat cattcccttc cattcccttt ggcgcgcggt
     1201 aaggcccggg cgtcccacgg atttgcacat ggacttcacg cagtttctcg atgccggcgc
     1261 ggtcgaggcc gatctggcag tggccaacaa aaaagcattg ttccagacgc tcggcgcgct
     1321 tgccgagcgg aggctgggct tggccgcgcg ggaagtcacc gaccggcttc tggagcgcga
     1381 acggctaggc accaccggct ttggcggcgg cgtcgcgatt ccgcatgggc gcctggccgg
     1441 gttggagacg atccgcgcgg ccttcgtgcg gctcgaaaag ccgatcgact atggcgcgat
     1501 cgacgatctg ccggtcgacc tggtgttcat gctcgtttcg cccgaggatg cgggggccga
     1561 tcatctgaag gctttggcgc aggtgagccg ccgcctgcgc gaccgcgcct ttgtcgcaaa
     1621 gctgcgcgga gccggatcga ccgacgcgct ctacgcgctg ttcgcgagcg ccgaaacgcg
     1681 cgatgccgcc tgagacaggc gccgaagcgc atttccgcgc gctcgagtcg ctctacgcag
     1741 cggcgcccat caacaagctg ttccgctcgc gcctcgagat cgtcgaggag ggctttgcgc
     1801 ggatcatgtt cgacgtcgac gcgcagctgc accatgccgc gggagcgatg cacggcacgg
     1861 cctatttcaa gatgctcgac gacgcggcct tctatgcaac gaacagcctc gtcacggatc
     1921 gcttcctgct gacgaccgcg ttcaacctgc ttttcacccg gccgatcgtc gaggggcccg
     1981 tggtggcgga agggcgctgg gtgagcggcc ggcggcgcgt gttcgtcgcc gatgcgcggc
     2041 tgatcggccc tgacggcgag gaagcggcgc gcggcaccgg cacgttcatg cgctcgcgca
     2101 tcccgctctc ctctctgaaa ggctatgctt ttcctgcatg acagaggccc gcctcaccag
     2161 ccggatgacc gtcgatgcgc tgatgcggcg cgtgcgggcg gaaggcggat tcgcaaccct
     2221 gctcgcgcgc ggcgacgaga catccggcgc gatcgtgctc gtttgtgcgg aacgcggcgc
     2281 ggtgaaggcg ctgcttgaac ggacgctgga tctggagggg cgctatcgct ggacgcgttg
     2341 cggaccggac gaagttgaat cggccgcgac tcgcgattcg tatcttcagc gccgccgcga
     2401 ccgggatccc gatttatggt taattgaact ggacatcgcg gacgctgaac ggttcgccgc
     2461 tgaaaccatg tcatttcgtt gacgctggtc gatgccggcc cgaaagcggg cccagcaacc
     2521 acgcgccgga tcgccgtcaa gcggaagcac cgcagcgagc gatagcgtag tcggggggaa
     2581 gatcagcggc cgcgtgggtg tttgggcgtg ccgccagtcg atcgactcac cgccaagtac
     2641 gaatgaagaa tgagcttcat ccttcgcgcc gcgacgctcg cggcgatgac cttttgcacg
     2701 atctatgggg ccagcagcgc cccatcctta gcggaaacgg ttacgagcac cgtctcagct
     2761 ttctccaacg aagcgcagac tgcaccggtt cccgcggtga ccgtcgagcc gcttcccgca
     2821 gttgctccgc cgagcatcga cgatgccgtc atttcgcgcg cgccggccga ggagcccgaa
     2881 gcccccaaga gcctcgccca gctggtcgcc atgcaggaca ttcccgccag gctcgatcac
     2941 gagaccgaat gc
//
LOCUS       DASQVK010000120         4876 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_7403, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000120 DASQVK010000000
VERSION     DASQVK010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4876
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7403"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2441
                     /gene="secA"
                     /locus_tag="VE567_02510"
     CDS             <1..2441
                     /gene="secA"
                     /locus_tag="VE567_02510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0017038 - protein import [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HYZ47745.1"
                     /translation="IAEMRTGEGKTLVATLATYLNALPGLGVHVVTVNDYLARRDAEW
                     MGQIYRFLGMSVGVIVPNLTDQQRREAYASDITYGTNNEFGFDYLRDNMKYERTSMVQ
                     RPFNFAIVDEVDSILIDEARTPLIISGPTDDKSELYKQVDAIVKQLVPEDYELDEKQK
                     SIILTEDGTEKAERLLEAAGHLQGDNLYDFENTQVVHHLNQALRANVMFKRDTDYIVK
                     DGKIVIIDEFTGRMMDGRRWSDGLHQAVEAKEGVNIEPENQTLASITFQNYFRMYPKL
                     SGMTGTAATEAGEFHDIYKLNVVTIPTNLPIRRVDEDDQFYKNIKDKFAAIAKSIEEH
                     SGRGQPVLVGTVSIEKSELLSQYLRQLNVPHNVLNARFHEQEAHIVAQAGRSGAVTIA
                     TNMAGRGTDIQLGGNVEFRIADELSALPEGPDRDAAIARIKREVEEERQKVIEAGGLF
                     VLGTERHESRRIDNQLRGRSGRQGDPGLSRFYLSLDDDLLRIFGPDTMFARMMNSNLA
                     DGEAIGSRWLNKAIETAQKKVEARNYDIRKQLLEYDDVMNDQRKVIYEQRTDIMDSET
                     LEDVVEDMRHETVNSLVGEACPPNTYPEQWNIEGLKARAQEILALDVPIEEWIKEQAV
                     DPEMVEERLRAMADEAMAKKAADLDSSTWSQVEKSVLLQSLDHHWKEHLSTLDALRQV
                     IHLRAYAQKTPINEYKQEAFALFERMLEAIREDVTRVLAHAQFMTAPPELPPMPEFVT
                     THIDPLTGEDNSWDEDAASGLVTATLPPLQVARPMMAEDLGDDPAQWEGRVSRNAPCP
                     CGSGQKYKHCHGAL"
     gene            2543..3289
                     /locus_tag="VE567_02515"
     CDS             2543..3289
                     /locus_tag="VE567_02515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017670861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HYZ47746.1"
                     /translation="MIVLALLFAVTAALYASVGFAGGSTYNALLALAGVDHRVFPLVA
                     LICNLIVATGGTIRFAQANLVPWRRLLPLLALSVPAAWVGGMVPVSKQLFLWLLGSSL
                     LVASVLLFIQRERDVEQRRFVLLGPAIAAPIGLLSGVVGIGGGIFLAPVLHLIGWDRT
                     KRVAAAASVFILANSISGLGGQLTKLSGHREVVEAAAGYWPLALAVLVGGQLGSRAGV
                     QLLPALWLRRLTGLLILYVAIRLLVQAWGA"
     gene            3462..4316
                     /gene="yghU"
                     /locus_tag="VE567_02520"
     CDS             3462..4316
                     /gene="yghU"
                     /locus_tag="VE567_02520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013040284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent disulfide-bond
                     oxidoreductase"
                     /protein_id="HYZ47747.1"
                     /translation="MSEQTDYTPPKVWTWNKPNGGQFASVNRPVAGPTHGKELPVGRH
                     PLQLYSMGTPNGIKVTVMLEELLALGITGAEYDAWLIRIGEGDQFGSGFVDINPNSKI
                     PAMLDRSGPEPIRLFESGSILLYLAEKFGAFLPTALKERTEVLNWLFWQMGSAPLLGG
                     GFGHFYVYAPLKIEYAIDRFAMEAKRQLDVLDRRLAESRYVGGDDYSIADIAVWPWYG
                     RVALGEAYDAAEFLSVSEYKNVLRWAETVAARPAVRRGQIVNRTGGGIFIEERHEAAD
                     IDAALARG"
BASE COUNT          920 a         1534 c         1583 g          839 t
ORIGIN      
        1 agatcgccga gatgaggacg ggcgagggca agacgctggt cgcgaccctc gccacttatc
       61 tgaacgcact gccggggctc ggcgtccatg tcgtgaccgt gaacgactat ctcgcccgcc
      121 gcgacgccga gtggatgggg cagatctacc gtttcctcgg catgtcggtc ggcgtgatcg
      181 tccccaacct gaccgaccag cagcgccgcg aggcctatgc ctcggacatc acctacggca
      241 cgaacaacga gttcggcttc gactatttgc gcgacaatat gaagtatgag cggacctcga
      301 tggtccagcg gcccttcaat ttcgcaattg tcgacgaagt ggactcgatc ctcatcgacg
      361 aagcgcgcac gccgctgatc atctcgggcc caaccgacga caagtcggag ctgtacaagc
      421 aggtcgacgc gatcgtgaag cagctcgtgc ccgaggatta cgagctcgac gagaagcaga
      481 aatcgatcat cctgaccgag gacggcaccg aaaaggccga gcggctgctc gaggccgcgg
      541 ggcacctcca gggcgacaat ctctatgatt tcgagaacac gcaggttgtt caccacctga
      601 accaggcgct gcgcgcaaac gtcatgttca agcgcgacac tgattacatc gtgaaggacg
      661 gcaagatcgt catcatcgac gagttcaccg gccgcatgat ggacggacgg cgctggtccg
      721 acggcctgca tcaggcggtc gaggccaagg aaggcgtgaa catcgagccc gagaaccaga
      781 cgctcgcgtc aattaccttc cagaactatt tccgcatgta tccgaagctc tcgggcatga
      841 ccggcacggc ggcgacggag gcgggtgagt tccacgacat ctacaagctg aacgtcgtca
      901 ccatcccgac caacctgccg atccgccgcg tggatgaaga cgatcaattc tacaagaaca
      961 tcaaagacaa gttcgccgct attgcgaagt cgatcgaaga gcatagcggg cgcggtcagc
     1021 cggtgctggt cggcactgtc tcgatcgaga agtcggagct gctgagccag tatttgcgcc
     1081 agctgaacgt gccccacaac gtgctcaatg cccgcttcca cgagcaggaa gcgcatatcg
     1141 tggctcaggc cggccgctca ggcgcggtga cgatcgcgac caacatggcc ggccgcggca
     1201 ccgacattca gctgggcggc aatgtggagt tccgcatcgc cgacgagctt tccgcgcttc
     1261 ccgagggacc ggaccgcgac gcggccattg cgcggatcaa gcgcgaggtc gaggaagagc
     1321 ggcagaaagt gatcgaggcc ggcggcttat tcgtgctcgg caccgagcgg cacgagagcc
     1381 ggcgcatcga caatcagctc cgcggccgct caggccgtca gggcgatccg ggccttagcc
     1441 gcttctatct ctcgctggac gacgacctgc tacgcatctt cgggcccgac acgatgtttg
     1501 cgcgcatgat gaactccaac ctggccgacg gcgaggcgat tggttcgcgt tggctcaaca
     1561 aggcgatcga aacggcgcag aagaaagtcg aggcgcgcaa ctacgacatc cgcaagcagc
     1621 tcctcgaata tgacgacgtc atgaacgacc agcgcaaggt catctacgag cagcgcaccg
     1681 acatcatgga ctcggagaca ctcgaggatg tggtcgagga tatgcgccac gagacggtca
     1741 actcgcttgt cggcgaagcc tgcccgccga acacctatcc cgaacagtgg aatatcgagg
     1801 ggctgaaggc gcgcgcgcag gaaatccttg cgctcgatgt gccgatcgag gagtggatca
     1861 aggagcaggc cgtcgatcca gaaatggtcg aggaacggct gcgtgctatg gcggacgagg
     1921 cgatggcaaa aaaagccgcc gacctcgatt cctcgacctg gtcgcaggta gaaaagagcg
     1981 tcctgctgca gtcgctcgac catcactgga aggaacatct gtcgacgctg gacgcgctgc
     2041 ggcaggtcat ccacctgcgc gcctatgcgc agaagacgcc gatcaacgag tataagcagg
     2101 aagccttcgc gctgtttgag cgtatgctcg aagcgatccg ggaggatgtg acccgcgtgt
     2161 tggcgcatgc tcagttcatg accgcccccc ccgagctgcc gccgatgcca gagttcgtga
     2221 cgacgcacat cgatccgctg accggcgagg acaatagctg ggacgaggac gcggcgagtg
     2281 gcctcgtcac cgcgaccttg ccgccgctcc aggtcgcccg gccgatgatg gcagaggatc
     2341 tgggcgacga ccctgctcag tgggagggcc gcgtcagccg caacgcgcca tgcccctgcg
     2401 gttcgggcca gaagtacaag cactgccacg gcgcgctgta agcattttcc ctcccgcttg
     2461 cgggaggggg tggggcgacc tgaactttac gcgcccgtca tgagttgccc gctccgggct
     2521 cctcacctaa acgggcggaa ggatgatcgt cctcgcgctc cttttcgccg tcactgcagc
     2581 gctctacgcc agtgtcggct ttgcgggcgg ctccacttat aatgcgctgc tggcgctggc
     2641 cggcgtcgat caccgcgtct ttccattggt cgcgctcatc tgcaacctga tcgtcgcgac
     2701 gggaggcacg atccgtttcg cgcaagccaa tctcgtccct tggcggcgat tgctgccctt
     2761 gctcgcgctg tccgtaccgg ccgcctgggt tggcggcatg gttcccgtgt cgaaacaact
     2821 ctttctatgg ctgctcggca gctcgcttct ggtcgccagc gtcctcttgt tcatccagcg
     2881 cgagcgtgac gtcgagcagc ggcgtttcgt cctgctcggg ccggccatcg cggcgccgat
     2941 cgggttgctc tcaggcgtcg tcgggatcgg cggcggcatt ttcctggccc cggtgttgca
     3001 cctgatcggt tgggaccgga cgaaacgcgt cgcggccgcc gcctcggtct tcatcctcgc
     3061 caactcaatc tccgggctcg gggggcagct gaccaagcta tcgggccacc gcgaagtggt
     3121 cgaggccgct gccggctact ggccgcttgc gctggcggtg ctggtcggag ggcagcttgg
     3181 cagccgcgct ggcgtgcagc tgctgccggc gctttggctg cggcggctga cgggcttgct
     3241 gatcctctac gtcgctatcc gcctgctggt ccaagcctgg ggcgcatgag ctcaggcgct
     3301 cgctgggcgt gcctggcgac gacgtcaacc gcggcgcggc ctcgataacc tgccgatcat
     3361 cccaaagttc gcgtatctgg cccgcccgga cttaaaaccg gacgggaccg aaactaattg
     3421 gcgggcaccg gccgcctggg gcggcgtggc aaggaggcga gatgagcgag caaaccgatt
     3481 acacaccgcc aaaggtctgg acctggaaca agccgaacgg cggccagttc gcatcggtga
     3541 accgtccggt tgccgggccg acccatggca aggaactgcc cgtcggccgc cacccgctgc
     3601 agctttattc gatgggcaca cccaatggca tcaaggtcac cgtcatgctg gaggagctat
     3661 tggcgctcgg catcacgggt gccgaatatg atgcgtggct gatccggatc ggcgagggcg
     3721 atcagttcgg ctccggcttt gtcgacatca acccgaactc aaaaatcccg gcaatgctcg
     3781 atcgcagcgg gccggagccg atccgcctgt tcgagtccgg atcgattctg ctctacctcg
     3841 cggaaaagtt cggcgcattc ctaccgaccg ctctgaagga acggaccgag gtcctgaatt
     3901 ggctcttctg gcaaatgggc agcgcgcccc tgctcggtgg cggctttggg catttctacg
     3961 tctatgcacc cctgaagatc gaatatgcca tcgaccgttt cgcaatggag gccaagaggc
     4021 agctcgacgt gcttgaccgg cgtctcgcgg aaagccggta tgtcggcggc gacgattata
     4081 gcatcgccga tatcgcggtc tggccctggt acggtcgggt cgcgctcggc gaggcctatg
     4141 acgcggccga gttcctgtcg gtcagcgaat ataagaacgt ccttcgctgg gccgagacgg
     4201 ttgccgcgcg cccggcggtc cgccgcggcc agatcgtaaa tcgcactggc ggcggcatct
     4261 tcatcgaaga gcggcatgag gccgccgaca tcgacgctgc tctggcgcgc ggctaagctg
     4321 ccggagcggc gtcgcgaatg ctcccccggc ggcgccggac cgcaatgcca agtaggcaaa
     4381 agccgcagag cattgaggcc cagaggcttg gctctggcac ccgtcctgga actggtaccg
     4441 caggaaacga acccaacgcc gaccagcgct ccgggccggc gtaactcctc aggcgccagt
     4501 catcgtcgtg cgccaggcgg tccgagtttt cccgcatggc tatcaacgga gccacgccta
     4561 ggttcgacag gagtggttga tccacgagct cgatgggcag cgcaatcgcg gcgaacagag
     4621 gctctgttga gggtggttcg ggcgcgggct gctcgcgcgt gggccgcaca gcatgcgcgc
     4681 ggtgctcggc ccgccgtagc gccgtggcat ggctcggcgg gggctccatc ggaaccggct
     4741 ttaggcctgg tgccacctta ggagcgacgg ggtgtgcggc ctgactggcg ataggggagg
     4801 ggccggacag aatgaatgtc gtggccacaa gtccaagaac ggaccggctg cgcgaaaaca
     4861 gggggcgcat gatcat
//
LOCUS       DASQVK010000121         4398 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_292205,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000121 DASQVK010000000
VERSION     DASQVK010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4398)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4398
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292205"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..848
                     /locus_tag="VE567_02525"
     CDS             <1..848
                     /locus_tag="VE567_02525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019371135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HYZ47748.1"
                     /translation="FLLVGLAGAAAAQKPAPALPPGVAAQVQAQKARPAASAAAAAAK
                     AEQDLTAGYVLGPDDVVEITVLGQPEFTTRARVKANGTVQLPFLGEQKVAGETALTLA
                     PKIAERLRAGGYYTKPVVNIEISGFASRYVVLLGAVAQPGLQPVDRSYRLSEIIARAG
                     GIRETGADFVTLTRATGEQKDYPFERLAAGGPNDDPVVNPGDKIYVPEAELFYIYGQV
                     NAPGVYPLKTDMSVRKAIARGGGFTAAGSAKRIKLYRNGEEMKVNLDMKIQPGDVFVV
                     GERLF"
     gene            864..2189
                     /locus_tag="VE567_02530"
     CDS             864..2189
                     /locus_tag="VE567_02530"
                     /inference="COORDINATES: protein motif:HMM:NF025179.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNVR domain-containing protein"
                     /protein_id="HYZ47749.1"
                     /translation="MSFVQFLRILAARKAIILATLLACFFAAAVTVSLLPPRYEAHNR
                     VLIDLAKPDAFLSQLTPSAVNSYVSNQLKQITDVQTAGLVVDNLGWATDPNNQAAFDA
                     AGRPGGDIRDWLAQRIVDNTTAKFIEQSSIVDIGYRGTDPATTQTIAQAIREAFLKLN
                     RDQRVNTATRAAASYEEQAKRALAEVTRAENERTQYAKANGIVIQPGDIDLEQSKLGA
                     LSNATAAPTQAQMMPNQVNPQIAMLKQQIAQAQMTLGPNHPTYQALQRQLAAVQSSGS
                     GRGSMVPGTSRAEIESAYQAQKARVLGQADKIDRLNQMQADVAVRRDQYQKLASKAQE
                     MKSIALSGDTNLEPLGNTNLPDNPVWPNKPLVIIGSLALGLVLGVLLALLVELLARRV
                     RSEDDLEFATGVPVLAVVGSESAENGLGARLLRLIDRDRSGRREALSEA"
     gene            2192..2917
                     /locus_tag="VE567_02535"
     CDS             2192..2917
                     /locus_tag="VE567_02535"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004713 - protein tyrosine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0004715 - non-membrane spanning protein
                     tyrosine kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CpsD/CapB family tyrosine-protein kinase"
                     /protein_id="HYZ47750.1"
                     /translation="MSMKSALQEMEQEAGLPAPAEARQPQLPSDQAAPIESVMVVEPH
                     SLQAEAIRGLRTRLSAQHLREGRRSLAICSPTAESGCTYIALNLAVAMAQAGVRTALV
                     DANLRDPMIADLCGLPLEMPGLSDYLASDGLAMSEIVDTELMPNLAVIGAGEVPDNPQ
                     ELLSGARFRGLVDQLLREYDLTIFDTAPANICSDGQRIATLAGFSLIVSRKHKTYVQD
                     VKTLAKQLRADRSVVVGSILNSF"
     gene            2917..3801
                     /gene="xrtV"
                     /locus_tag="VE567_02540"
     CDS             2917..3801
                     /gene="xrtV"
                     /locus_tag="VE567_02540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017667570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exosortase V"
                     /protein_id="HYZ47751.1"
                     /translation="MDMMADTARARPRLAPVLGDHWPLLLGLAALTIPTLIAVATESW
                     TGESGVHGPIVLATGVWLFARRWRELLAIRQPGSWVLTLALLVPTLALYAFGRAFGFL
                     VIEALALVGVYALVFYGWFGAEAVRRMWFPIVYMLFVVPLPGWVVTTVTGPMKEWVSR
                     AATWILAHAGYPIVREGVTLYVAQYQLLVEDACAGLNSLISLTAISLFYIYILHNASW
                     RYAVFLMLWIVPVALLANLVRVMILVLITYHFGNAAAQGFLHSTAGLVMFATALIGIF
                     VVDSVMTPVRRMLMRRNA"
     gene            3798..>4398
                     /locus_tag="VE567_02545"
     CDS             3798..>4398
                     /locus_tag="VE567_02545"
                     /inference="COORDINATES: protein motif:HMM:NF023410.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EpsI family protein"
                     /protein_id="HYZ47752.1"
                     /translation="MISRRELIVGGACMAAAASAEVARPHNRVSLLGPHQSLEAAVPR
                     AFGRWKMREGEGIVTPQSENSLAAKLYNQSVARFYEDPDGNAVMLLIAYGNTQSDTLQ
                     LHRPEVCYPAFGFEIVENRPAEIPLGHGAVLPTRNLVASLPGREERISYWTRIGEYLP
                     VSNGEQREVRFRIALAGVIPDGVLVRISNFLEEDDQAFGL"
BASE COUNT          773 a         1412 c         1425 g          788 t
ORIGIN      
        1 ggttcctgct ggtgggactg gccggcgcag cggccgccca gaagcccgcg cccgctctac
       61 cgcccggcgt cgctgcccag gttcaggccc aaaaggcgcg gccggccgca tccgctgcgg
      121 ccgccgcggc caaggcagag caggacctca ccgccggcta tgtgctgggg cccgacgacg
      181 tggtcgagat caccgtgctg ggtcagccgg aattcacgac gcgcgcacgt gtgaaggcca
      241 acggcacggt acagcttcct ttcctcggtg agcagaaagt cgccggcgag acggctctca
      301 cgctcgctcc gaagattgcc gagaggctgc gcgcgggcgg ctactacacc aagccggtgg
      361 taaacatcga aatctccggc ttcgccagcc ggtatgtcgt gctgctcgga gcggtcgccc
      421 agcccgggct gcagccggtc gaccgctcgt atcgactgtc cgaaatcatc gctcgcgcgg
      481 gcgggatccg cgagaccggc gccgatttcg tgacgcttac gcgcgcgacc ggcgagcaga
      541 aggactatcc gttcgagagg ctcgccgccg gcggacccaa tgacgatccg gtcgtcaatc
      601 cgggggataa aatctatgtg ccagaggcgg agctattcta tatctatggc caggtgaacg
      661 cgcccggcgt ttatcctctg aagaccgata tgtcggtccg caaggcgatc gctcgcgggg
      721 gcggcttcac cgcagccggc tcggccaagc ggatcaagct gtaccgcaac ggagaagaga
      781 tgaaggtcaa tctcgatatg aagatccagc cgggcgatgt gttcgtcgtc ggcgagcggc
      841 tcttctaaag gaaggcgttt ccaatgagct tcgtccagtt cctgcgtatc ctggcagccc
      901 gcaaggcgat cattctggca acgctgctgg cctgcttctt cgctgcggcg gtgacggtca
      961 gtctgctgcc gccgcgctat gaagcgcaca accgcgtgct gatcgacctt gccaagcccg
     1021 acgcgtttct gagccagctg acgccgagcg cggtcaattc atatgtctcc aaccagctca
     1081 agcagatcac tgatgtgcag acggccgggc tcgtggtcga caatctgggc tgggcgaccg
     1141 accccaacaa ccaggccgca ttcgatgctg ccgggaggcc aggcggcgac attcgtgact
     1201 ggctggctca gcgcatcgtg gacaatacca cggcgaaatt catcgagcag agcagcatcg
     1261 tcgatatcgg ctatcgcggc accgatcctg ccaccaccca gacgatcgcc caggccattc
     1321 gcgaagcctt tttgaagctc aaccgcgatc agcgcgtgaa caccgcgacg cgcgccgccg
     1381 cttcctacga agagcaggcc aagcgcgctt tggccgaagt cacgcgggcc gagaatgagc
     1441 gcacgcaata tgcgaaggcc aacggtatcg tgatccagcc cggcgatatc gatctggaac
     1501 agtcgaaact tggcgcgctt tcgaacgcaa ctgcggcccc gacccaggcg caaatgatgc
     1561 ccaatcaggt gaatccgcag atcgcgatgc tgaagcagca gatcgcgcag gcgcagatga
     1621 ccctgggccc gaaccacccg acctatcagg cactgcagcg ccagctcgcg gcggtgcaat
     1681 cgtccggatc gggccgtggc tcgatggtcc cggggaccag ccgcgccgaa atcgagagcg
     1741 cctatcaagc acaaaaggcg cgcgtgctcg gtcaggccga caagatcgac cggctgaacc
     1801 agatgcaggc cgacgtcgcc gtcagacgcg accaatatca gaaactcgcc agcaaggccc
     1861 aggagatgaa atcgattgcg ctgtcaggcg acaccaatct cgagccgctg ggtaacacca
     1921 acctgccgga taatcccgtc tggccgaaca agccgctggt aatcatcggc tcgctcgccc
     1981 tcggcttggt gctgggcgtg ttgctcgcgc tgctggtcga actgcttgcc cgccgcgtgc
     2041 gcagcgaaga tgatctggag ttcgccaccg gcgtgccggt gctggcggtt gtcggtagcg
     2101 aaagcgccga gaatggtttg ggggcgcggc tgttgcgcct catcgatcgc gaccggagcg
     2161 gtcggcgcga agccctttcg gaggcctgac gatgagcatg aaaagcgcgc tccaggaaat
     2221 ggaacaggag gcggggctgc ccgcccctgc cgaggcccgc cagccgcagc ttcccagcga
     2281 tcaggcggcg ccgatcgaat ccgtgatggt cgtggagccc cattcgcttc aagcggaggc
     2341 cattcgcggg ctgcggacgc ggctttcggc gcaacatttg cgggagggcc ggcgatcgct
     2401 cgcgatctgc tcgcccactg cggaatccgg ctgcacctac atcgcgctca acctggccgt
     2461 cgccatggcc caggccggcg tgcgtaccgc gctggtcgat gccaatctgc gcgaccctat
     2521 gatcgcggac ctgtgcggtc tgccgctcga aatgccgggc ctgtcggatt atctggcgtc
     2581 ggacgggctg gcgatgagcg agatcgtcga taccgagctg atgcccaatc tggcagtgat
     2641 cggcgcgggc gaagtgcccg acaatcccca ggagcttctg tccggcgcgc gctttcgcgg
     2701 gctcgtcgat cagcttttgc gcgaatatga cctgacgatc ttcgacacgg cgccggccaa
     2761 tatctgctcg gacgggcagc gcatcgcgac cctcgccggc ttcagcctga tcgtgtcgcg
     2821 caagcacaag acctatgtcc aggacgtgaa gacgctcgcc aagcaactgc gcgccgaccg
     2881 ctcggtggtg gtcggctcta ttttgaacag cttctgatgg acatgatggc cgatactgcc
     2941 agggcacggc cgcgcctggc gccggttctg ggcgatcatt ggcctctgct gctcggcctg
     3001 gccgcactca ccatccccac gctgatcgcg gtcgcgaccg aatcatggac cggcgaatca
     3061 ggcgtgcacg gtccgatcgt gctggcgacc ggggtctggc tgttcgcccg tcgctggcgc
     3121 gagctgctgg cgatccggca gccaggcagc tgggtgctga cgctggctct gctcgtaccg
     3181 actctggcgc tctatgcctt cggccgcgcc ttcggctttc tcgtcatcga ggcgctcgcg
     3241 cttgtcggcg tgtacgcgct cgtcttctat ggctggttcg gcgcggaggc ggtgcgccgg
     3301 atgtggttcc cgatcgtcta tatgctgttc gtcgtcccgc ttcccgggtg ggtggtgaca
     3361 acggtgaccg gaccgatgaa ggaatgggtg tcgcgagccg cgacgtggat tctggcccat
     3421 gccggctatc cgatcgtgcg cgaaggcgta acgctgtatg tcgcccagta ccagttgctg
     3481 gtcgaagatg cctgcgctgg gctcaattcg ctgatcagcc tgaccgcaat cagcctgttc
     3541 tatatctata tcctgcataa tgcctcttgg cgctacgcgg tgttcctgat gttgtggatc
     3601 gtgccggtgg cgctgctcgc caacctcgtg cgcgtgatga tcctggtgct gatcacttat
     3661 catttcggca acgcggcggc gcagggtttc ctccattcga ccgccggcct tgtcatgttc
     3721 gcgacggcac tgatcggcat cttcgtcgtc gacagcgtga tgacgccggt gcgacgcatg
     3781 ctgatgcgga gaaatgcatg atcagccggc gcgaactcat tgtcggcggc gcttgcatgg
     3841 ccgcggcggc cagcgccgaa gtggcgcggc cgcacaaccg tgtcagcctg ctcgggccgc
     3901 accaatcgct ggaagcggcg gtgccgcgcg cgttcggtcg ctggaaaatg cgcgaaggcg
     3961 aaggcatcgt cacaccgcag agcgagaaca gcctcgcggc aaagctttac aaccagtcgg
     4021 tcgcccggtt ctacgaagac ccggacggca atgcggtgat gctgctgatc gcctatggca
     4081 atacgcagag cgacacgttg cagctccacc gccccgaggt ctgctatccc gcatttggat
     4141 ttgagatcgt cgagaaccgc cctgcggaga ttccactcgg ccacggcgcc gtgctgccca
     4201 cacgcaacct cgtcgccagc ctcccgggcc gagaagagcg gatcagctac tggacgcgaa
     4261 tcggcgagta tctgccggtc agcaatggcg agcagcggga ggtgcgcttc cggatcgcgc
     4321 tagcgggggt gattcccgac ggggtgctgg tccgcatctc gaattttctt gaagaggacg
     4381 atcaggcttt cggcctca
//
LOCUS       DASQVK010000122         4063 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_228935,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000122 DASQVK010000000
VERSION     DASQVK010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4063)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4063)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4063
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228935"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1757)
                     /locus_tag="VE567_02550"
     CDS             complement(<1..1757)
                     /locus_tag="VE567_02550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017670672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HYZ47753.1"
                     /translation="MEQSETAGSRFTLKRASDFRAKLGELWARRWFRLAAYALGVVLI
                     GYGAIWLVFARDLPSVDKLRTYEPPLPTNVRALDGTPIHSYARERRVQLSYAEYPPLL
                     VRAYMSAEDKNFFRHHGVDYLGVLRAVATNLTHSGRPIGASTITQQVAKNLLLGNELS
                     YKRKVKEAILANRIESALTKEQIMELYLNQIFLGRNAYGVQAASRAYFDKDVDQLNLP
                     EMAYLAILPKAPSNYDPERHPDRALERRNWVLGEMEQNGFITRAQRDEARGAPLGTVP
                     RQGTRFEANAGYFLEEVRRELIQRFGEGAEKGPHSLYAGGLWVRTSLDPRLQQLAETA
                     LRDGLARYDRGRGWHGPIRKLDVSGNWAQRLAAANLGAGYRDWAVAIVLEKAGGQATI
                     GFPSGQTGALPAFAASMPVAGQASSAFDALQPGDVIAVARDGDHWALRSIPAVSGAMV
                     VEDPNNGRIMAMQGGWDSRVHTFNNATQALRQPGSTIKPFVYAAALDNGMTPATLLVD
                     GPFCIYQSALLGQKCFRNFSGGYAGPQTVRWGIEQSRNLMTVRAASQTGMNNVVRTIS
                     RMGIGNYTPYLSIALGAGET"
     gene            complement(1807..2676)
                     /locus_tag="VE567_02555"
     CDS             complement(1807..2676)
                     /locus_tag="VE567_02555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006832229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HYZ47754.1"
                     /translation="MTAGAKLLWRALGGAVLLLGAAGLAVLTPGQAASEGAALTIPLD
                     PPLPAPPLPGVTGPAGAPLVVIDAGHGGYDPGAASPTGEREKDLTLDLARAVRDALVK
                     DGQVRVALTRSDDRYLALRERFDIARQLGASLFLSIHADSAGEDDEARGATLYTLSET
                     ASDAEAAALAARENRADVVHGINLSGRPGEVASILIDLAQRESHENAVAFTRLLHREA
                     KDVLPFRDDYHREASLVVLKAPDVPSVLFETGYITNEADRGLLASPQARAQLGQAVAR
                     AVEIHFAKRFAAR"
     gene            complement(2744..3517)
                     /gene="xth"
                     /locus_tag="VE567_02560"
     CDS             complement(2744..3517)
                     /gene="xth"
                     /locus_tag="VE567_02560"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008311 - double-stranded DNA 3'-5' DNA
                     exonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HYZ47755.1"
                     /translation="MRIVTYNVNGIKARLPRLLEYLEEQKPDVVCLQELKSSDETFPE
                     LEIRAAGYGAVWHGQKGFNGVAVLARGADPVERRRGLPGDPDDTHSRYLEAEVDGVVI
                     ASIYLPNGNPVPGPKFDYKLLWMERLCTHAAELWAEERPVVLAGDYNVIPTDADVFSV
                     SAMQRDALMQPEIRQAFRRLLYQGWTDALRTRHPVAQLWTFWDYQAGCWQRDAGFRID
                     HLLLSPLAADRLADAGVDKSYRGREKASDHAPTWVVLRD"
     gene            complement(3541..3870)
                     /gene="erpA"
                     /locus_tag="VE567_02565"
     CDS             complement(3541..3870)
                     /gene="erpA"
                     /locus_tag="VE567_02565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HYZ47756.1"
                     /translation="MSNPIQLTPSAAKRVAAIAEKQGKPAMLRLSVEGGGCSGFQYRF
                     GLADAIDGDDIAVETDGVTLVVDSISLDLVRGAAVDFVENLGGAAFKVENPNAVAGCG
                     CGSSFSV"
BASE COUNT          712 a         1321 c         1350 g          680 t
ORIGIN      
        1 gtctcgccgg cgccaagcgc gatcgaaaga taaggcgtgt aattgccgat ccccattcgg
       61 gagatcgtac gcacgacatt gttcatgccg gtttgcgagg cggcgcgcac cgtcatcaag
      121 ttgcgcgatt gctcgatgcc ccagcgcacc gtctgcggcc cggcatagcc gcccgagaaa
      181 ttgcggaagc atttctggcc cagcagggcg gactggtaga tgcagaacgg cccgtcgacg
      241 agcagcgtcg ccggggtcat gccgttgtcc agcgcggcgg catagacgaa gggcttgatc
      301 gtcgagcccg gctggcggag cgcctgggtg gcgttgttga acgtgtggac acggctgtcc
      361 cacccgccct gcatcgccat gatgcggccg ttgttgggat cctcgaccac catcgcgccg
      421 gagacggcgg ggatcgaacg gagcgcccaa tggtcgccgt cgcgcgcgac tgcgataacg
      481 tcgccgggct ggagcgcgtc gaacgcgcta ctggcctgcc ccgcgaccgg catgctcgcc
      541 gcgaaagcag gcagcgcccc ggtctggccg gaggggaagc cgatcgtcgc ctggccgccg
      601 gccttttcca gaacgatggc gactgcccag tcgcgatatc ccgcgccgag attggccgca
      661 gcgagacgct gcgcccaatt gccgctgacg tcgagcttcc tgatcggtcc gtgccagccg
      721 cggccgcgat cgtagcgggc gagcccatcg cgcagcgcgg tctcggcgag ctgctgcagc
      781 cgcggatcga gcgaggtgcg cacccacagg cccccggcat aaaggctgtg cggccccttt
      841 tccgcgcctt cgccgaagcg ctggatcagc tcgcgccgga cctcttcgag gaaatagccg
      901 gcattggcct cgaagcgtgt gccctggcgc ggcacggtgc cgagcggcgc gccgcgtgcc
      961 tcgtcgcgtt gcgcacgcgt gatgaagccg ttctgctcca tttcgccaag cacccaattg
     1021 cgccgctcca gcgcgcgatc agggtggcgt tccggatcgt aattggaagg tgccttgggc
     1081 aggatggcca gataggccat ttcgggcaga ttgagctgat cgacatcctt gtcgaaatag
     1141 gcgcgcgacg ccgcctgcac gccataagcg ttccggccga ggaatatctg gttaaggtat
     1201 agctccatga tctgctcctt ggtgagagca gactcgatcc ggttcgcaag gatcgcctcc
     1261 ttgaccttgc gcttgtagct gagctcgttg cccagcagca ggttcttcgc gacctgctgc
     1321 gtgatcgtcg aagcgccgat cggccggccg ctatgggtga gattggtcgc gaccgcacgc
     1381 aggacgccca gataatcgac accatgatgc cggaagaaat tcttgtcctc ggccgacata
     1441 taggcgcgca cgagcagcgg cggatattcg gcgtaggaaa gctgcacccg gcgttcgcgc
     1501 gcgtaggagt ggatcggcgt gccgtccaat gcgcggacat tggtaggcag cggcggctca
     1561 taggtgcgta atttgtcgac cgaaggcagg tcccgcgcga ataccagcca gatcgcgcca
     1621 tagccgatca gcaccacgcc aagcgcataa gccgcgagcc ggaaccagcg ccgcgcccat
     1681 aattcgccga gctttgccct aaagtcgctc gcccgcttaa gcgtaaagcg cgagcctgcc
     1741 gtctcagact gttccatccg ggatcaggct ctagcaagat tcgccggctt tggaacgggg
     1801 taaccctcag cgcgcggcga agcgtttggc gaaatggatt tcgactgcgc gcgccacggc
     1861 ctgtccgagt tgggcgcggg cctgcgggga ggcaagcagg ccgcgatcgg cctcgttggt
     1921 gatatagccg gtctcgaaca gcaccgaagg cacgtcgggg gctttgagca cgaccaggct
     1981 cgcctcgcgg tgataatcgt cgcggaaggg cagcacgtct ttggcttcgc ggtggagcag
     2041 gcgcgtgaag gcgacggcat tctcatgcga ttcgcgctgg gcgagatcta tcaggatcga
     2101 cgcgacttcg ccgggccggc cgctcaagtt gatgccgtgc actacgtccg cccggttctc
     2161 gcgcgcggca agtgcggcag cttcggcgtc agaagcggtt tcggacaagg tgtacagcgt
     2221 ggcgccgcgc gcttcgtcat cctcccctgc agaatcggcg tggatcgaca ggaacagcga
     2281 tgcgcccagc tgccgcgcaa tgtcgaaacg ctcccgcaga gcgagatagc ggtcgtcgct
     2341 gcgagtcagc gcgacacgga cctgaccgtc cttgaccaac gcatcgcgga ccgcccgtgc
     2401 gaggtcgagc gtcaggtctt tttcgcgctc gccggtcggc gaagcggcgc cgggatcgta
     2461 cccgccatgg ccggcatcga tcacgaccag cggcgcgccg gcgggcccgg tcacgccagg
     2521 aaggggcggc gcgggcagcg gtggatcgag cgggatggtg agcgcggcgc cttcggacgc
     2581 ggcctggcca ggcgtcaaca cggcaagccc cgccgcgcca agcagcagca ccgccccgcc
     2641 caatgcccgc caaagcagct tcgcgcctgc agtcaaatcg tcgcgccccg gtaaccttgg
     2701 tggcgcattt acctcatttc gcttaacaaa gcgaataggc gcctcagtcg cgcagcacga
     2761 cccaggtcgg cgcatgatcg ctggccttct cgcggccgcg atagcttttg tcgacgccgg
     2821 catcggcgag gcgatcggca gcgagcgggc tcaacagcag atggtcgata cgaaagccgg
     2881 catcgcgctg ccagcagccg gcctgatagt cccagaaggt ccagagctgc gcgaccggat
     2941 gacgggtgcg cagcgcgtcg gtccagccct gatagaggag gcggcgaaag gcctggcgga
     3001 tttccggctg catcaatgca tcgcgctgca ttgccgaaac cgagaagacg tcggcgtccg
     3061 ttgggatcac attatagtcg ccggcgagca caaccggccg ctcctctgcc catagctccg
     3121 ccgcatgcgt gcaaagccgc tccatccaga gcaatttgta atcgaatttg gggccgggca
     3181 ccggattgcc gttgggcagg tagatggacg cgatcaccac gccgtcgact tcggcttcga
     3241 gatagcggct gtgcgtgtcg tccgggtcgc ccggcaagcc gcgccggcgc tcgaccggat
     3301 cggcccccct ggcgaggacg gcgacaccgt tgaacccctt ctgtccgtgc cataccgcgc
     3361 catagcccgc ggcgcggatc tcaagctcgg ggaaagtctc gtcagaagat ttgagttcct
     3421 ggaggcagac cacatcgggc ttctgctctt ccagatactc gaggaggcgg ggcagccggg
     3481 ccttgatgcc gttcacattg taggtgacga tgcgcatggc ccccacctag cgggggagcg
     3541 tcagaccgaa aagctcgaac cgcagccgca gccagcgaca gcgttagggt tttcgacctt
     3601 gaaggctgcg ccgccgagat tttcgacgaa atccaccgcc gcgccgcgca ccagatcaag
     3661 gctgatgcta tcgacaacca gagtcacgcc gtcggtctcg accgcgatgt cgtcgccgtc
     3721 gatcgcatcg gcaaggccga agcggtactg gaagccagag cagccgccac cttccaccga
     3781 caggcgcagc atggccggct ttccctgctt ctcagcgatc gcggcgacgc gcttggccgc
     3841 cgagggagtc agttggatgg ggttgctcac attcgaccat gtaggaaagg aaagggccgc
     3901 cggcaacgtc gcgccggcgg ccctttctcc tccccttatc aggatagctc agtcggcgcc
     3961 ggcgccctcg tcatccgggc cgccctgagc gagcggcgcg ctcatcgcgt tgacgcgctg
     4021 cttcatgttc acggcatatt gcgcggaatc gaggtaaggc atc
//
LOCUS       DASQVK010000123         2911 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_450417,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000123 DASQVK010000000
VERSION     DASQVK010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2911
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450417"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..170)
                     /locus_tag="VE567_02570"
     CDS             complement(<1..170)
                     /locus_tag="VE567_02570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017183201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HYZ47757.1"
                     /translation="MTDTIFALSSGVPPAGIAVMRVSGRGAETALKALAGALPPLRQM
                     TLRTIRDPETGEA"
     gene            complement(167..400)
                     /locus_tag="VE567_02575"
     CDS             complement(167..400)
                     /locus_tag="VE567_02575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6489 family protein"
                     /protein_id="HYZ47758.1"
                     /translation="MKINVEVDCTPEEARRFLGLPDLTPVHEAYVAQMVDTVKTGVNA
                     EGLDAMLKSWGPMTDAGFKFWQQMMEGMGGRKG"
     gene            448..921
                     /locus_tag="VE567_02580"
     CDS             448..921
                     /locus_tag="VE567_02580"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HYZ47759.1"
                     /translation="MAYAPAAAMIATPIGPVRIEAEGDALTGIWIGRKGPVEAGAAVL
                     REAMAQLSAYFDGKLTAFDLPLTPASSERGPELRAAICSIGYGATASYGALAVQTSAS
                     ARAVGQACAHNPFPIIVPCHRVLGAGGALGYYSAGDGPATKVWLLKHEGAEGWLL"
     gene            918..1613
                     /locus_tag="VE567_02585"
     CDS             918..1613
                     /locus_tag="VE567_02585"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010542709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HYZ47760.1"
                     /translation="MMIEIETLEHDGRFQAYCAEPAGTPTAAVIVIQEIFGVNEGIRR
                     KCDHWASLGYLALAPDLFWRLQPGVQLDPDVPDQFQLALGLMGNFDQDTGIRDIEATI
                     KTARQRMGGAGKVGCVGYCLGGRLAFMTAARTDIDASVGYYGVGIDNLLREKHAISRP
                     LMLHIAGADHFVTPDVQKAMHEGLDDHPKVVLHDYPGLDHGFAAEMGKRRNEEGARLA
                     DSRTEAFFDEHLV"
     gene            complement(1661..2311)
                     /locus_tag="VE567_02590"
     CDS             complement(1661..2311)
                     /locus_tag="VE567_02590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017671633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HYZ47761.1"
                     /translation="MQELWAHIVADFTNIGSPAALSAFGQVLMIDVMLAGDNAIVVGA
                     LAAGLPVDQRKKVIMIGILAALVLRILFALIVTQLLQIVGLVFAGGLILLWVAWKMWR
                     ELTHKDSNEDGHEDLRPAKSFAGAAWAVAVADVSMSLDNVLAVAGAAREHPGILVIGL
                     LLSVALLGIAANLIARYIERYRWIAYLGLAVIVYVAGKMIYDGIVDPHVGLGVLFA"
     gene            complement(2457..>2911)
                     /locus_tag="VE567_02595"
     CDS             complement(2457..>2911)
                     /locus_tag="VE567_02595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47762.1"
                     /translation="APPRFAVRQRRLVAPEQLFAHFQRDQPFYSYALKRGASARPISA
                     RHSKEASMRKLLTAAAVAALTATPIAAQVQQGLVNVTIEDINIVRNALNNNNVNVAVP
                     VNVQVPIGVAANVCGISVAAIREQNNTCTAKTATQALGQALSKQGIGQ"
BASE COUNT          528 a          951 c          930 g          502 t
ORIGIN      
        1 gcctccccgg tttccgggtc gcggatcgtg cgcaacgtca tctgccgcag cggcggcaac
       61 gcgccagcaa gagccttgag cgccgtctcc gcccctcgtc cgctcacgcg catcacggct
      121 atgcccgcgg gcggcacgcc gctcgacagc gcgaaaatcg tgtccgtcac cccttccggc
      181 cgcccattcc ttccatcatc tgctgccaga atttgaaacc cgcgtcggtc atcggccccc
      241 agctcttcag catcgcgtcg agcccttccg cgttgacgcc ggtcttcacc gtgtccacca
      301 tctgcgccac ataggcttcg tgcacgggcg tcaggtccgg caggccgaga aaacgccgcg
      361 cttcctccgg cgtgcaatcg acttcgacgt tgatcttcat attatctccg cttgagccgc
      421 gcttcgcccc gctgctaacg cgctctcatg gcttatgcgc cggccgccgc gatgatcgca
      481 acgcccatcg gtcccgtgcg gatcgaggcg gagggcgacg cgctgaccgg catctggatt
      541 gggcgcaagg gcccggtcga agctggcgct gccgtgctgc gcgaagcgat ggcgcagctc
      601 tcggcctatt tcgacggcaa actcactgcc ttcgacctgc cgcttacgcc tgcgagcagc
      661 gagcggggcc ccgagttgcg cgcggcgatc tgctctatcg gctatggcgc gaccgcaagc
      721 tatggcgcgc tggcggtgca aaccagcgcc agcgcgcgag ctgtcggcca ggcgtgcgcg
      781 cacaacccgt ttccgatcat agtaccctgc caccgagtgc tcggggccgg cggcgcgctc
      841 ggctattatt cggcgggcga tgggcccgcg accaaggtct ggctactcaa acacgaaggc
      901 gcggaaggat ggctgctatg atgatcgaga tcgagacgct ggagcatgac ggccgattcc
      961 aggcatattg cgccgaaccc gcgggcacgc ctacggccgc ggtgatcgtc atccaggaaa
     1021 tcttcggggt gaacgagggc attcgccgca aatgcgacca ttgggcgagc ctgggctatc
     1081 tcgcgctcgc gccggacctt ttctggcggc tgcagcccgg cgtccagctc gatccggacg
     1141 tgcccgacca gttccagctc gcgctcgggc tcatgggcaa tttcgatcag gacaccggca
     1201 tccgcgacat cgaggcgacg atcaagacgg cgcggcagcg gatgggcggt gctggcaaag
     1261 tgggctgcgt cggctattgc ctgggcgggc ggctcgcctt catgacggcg gcgcgcaccg
     1321 atatcgacgc gagcgtcggc tattacggcg tcggaatcga caatctgctg cgcgagaagc
     1381 acgcaatctc ccggccgctg atgctccaca ttgccggcgc cgatcatttc gtgacgcccg
     1441 acgtgcagaa ggcgatgcac gaaggcctcg acgatcatcc caaagtcgtg ctgcacgact
     1501 atcccggcct cgaccacggc ttcgccgccg agatgggcaa gcggcgcaac gaagaaggcg
     1561 cgcggctggc cgacagccga acggaagcct ttttcgacga gcatctggtc tgacatccgc
     1621 ccgcgtcatc ccaaagcaag ttcgggatga cgcgtggcgc tcaggcgaac agcacgccca
     1681 ggcccacatg ggggtcgacg ataccgtcat agatcatctt gccggcgaca tagacgatca
     1741 ccgccaggcc cagataggcg atccagcgat agcgttcgat gtaacgggcg atgagattcg
     1801 cggcgatccc cagcagcgcg accgatagca gcaggccaat gacgagaatt cccggatgct
     1861 cgcgcgcggc gccggcgacc gcgagcacgt tgtcgaggct catgctgacg tcggcaaccg
     1921 cgacggccca ggcagcgcca gcgaagctct tggccgggcg cagatcctca tgcccgtcct
     1981 cattgctgtc cttgtgcgtg agctcacgcc acatcttcca cgcgacccag agcaggatga
     2041 ggccgcccgc gaatacgagc cccacgatct gcagcagctg ggtgacgatc agcgcgaaga
     2101 ggatgcgcag caccagcgcg gcaaggatgc cgatcatgat caccttcttg cgctggtcga
     2161 ccggcagccc ggcagccagc gcgccgacga caatcgcatt gtcgccggcc agcatgacgt
     2221 cgatcatcag cacctggccg aaggcggaca gcgcggcggg agagccgatg ttggtgaaat
     2281 cggcgacgat atgggcccag agttcttgca tgtcggcgta acgttttacc tgcggctggg
     2341 ggcccggcaa gagcaagggt ttgcgccggc ggcaagcgcc gattggcaga aacgtccgcg
     2401 accaaaaaaa agggcaatcc cgaagggttg ccctctcgtt cacctacgaa gcaaggctat
     2461 tgtccgattc cctgcttgga gagcgcctgt ccgagtgcct gcgtcgcagt tttcgcggtg
     2521 caggtgttgt tctgctcccg gatggcagcc acgctgatac cgcagacgtt cgcagcaacg
     2581 ccgatgggaa cttgcacgtt caccggcacc gcaacgttga cattgttgtt gttcagcgcg
     2641 ttgcggacaa tgttgatgtc ctcgatcgtg acgttcacga gaccctgttg aacctgggcg
     2701 gcaatcggcg ttgcagtaag agctgctact gcagcagcgg taagaagctt acgcatactg
     2761 gcctcctttg agtgacgcgc cgatattggt cgggcgctcg cccctctctt gagagcgtag
     2821 ctgtagaacg gttgatcgcg ctgaaagtga gcaaatagct gttcaggtgc gaccagccgc
     2881 cgctggcgca cggcgaagcg aggcggggcg a
//
LOCUS       DASQVK010000124         3331 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_292306,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000124 DASQVK010000000
VERSION     DASQVK010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3331
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292306"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            275..1681
                     /locus_tag="VE567_02600"
     CDS             275..1681
                     /locus_tag="VE567_02600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47763.1"
                     /translation="MRSLPSLARSRELRWIIILALIGLVLRILAARGTLWLDEAWSAV
                     LANDVGTPLGVFARINHDNNHHLNSLWLQIVGIGAPPLIARAPAIVAGTFSIVFAGLI
                     GARRGPWAGIVTALLFALSPVLVTLGSEARGYAPMALMALISAWYIDRYLAGENQANR
                     PVTIAICFFIGALFQLTMIFAACALVGWPLLVLWRRKGWRAGAVETARLLGPAAGALA
                     LALAIVAPPVLVGGAEFRFGSRQGFALPGFLRGLTDLLGSMVGWTSPPLWLLVAAAAL
                     AILGPALGMTRRAGFYWLALIAFPLTMAALQPMNAEHPRYHLLAGLALLLLLGEWVAT
                     LVRAGGWTRLAGAAGLLAFTGASLAADLALIGAGRGDVGPAVEALAARAPRGARVLID
                     GESGLALVKVAAAEAGYPVELATACPAAPFLFADTFPGEPDRLPTVQRCGAAYRAVAR
                     GHAVGLSGQNWTLYERVG"
     gene            1691..2872
                     /locus_tag="VE567_02605"
     CDS             1691..2872
                     /locus_tag="VE567_02605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYZ47764.1"
                     /translation="MFFNFLDELRNAGIPASLKEHLVLLEALDLEVIGRDPEQFYYLA
                     RATFVKDEGLLDRFDQVFAKVFKGIETSYGTKATPIPEEWLRKVAELYLTEEQMKEIE
                     KLGSWEEIMETLKKRLEEQKERHQGGSKWIGTGGTSPFGAYGYNPEGVRIGQAEGRHG
                     RAIKVWDKREFKNLDSTKELGTRNIKVALRRLRRFAREGAADELDIDATIDGTARQGW
                     LDIHMRPERHNAVKLLLFLDIGGSMDPHVKLCEELFSAATAEFKNMEFFYFHNCLYEG
                     VWKDNRRRFTERTPTWDVLHKYGHDYKVIFVGDASMSPYEITHPGGSVEHFNEEAGAV
                     WMHRVTNTYPAAVWLNPVPEKHWGYSQSIAALRELMAGRMFPLTLDGLDDAMRELSRK
                     L"
     gene            3087..>3331
                     /locus_tag="VE567_02610"
     CDS             3087..>3331
                     /locus_tag="VE567_02610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYZ47765.1"
                     /translation="MTRGIHESDRQQPIVLTVPGLNGSGPSHWQSLWEQSRPDTSRIE
                     LGMWSRPNRNAWVTKIDQAIRGSQPPIVLAAHSLGCLA"
BASE COUNT          530 a         1096 c         1103 g          602 t
ORIGIN      
        1 gttccgcgag cacttccatc tggtggccga gactgtccga cacgcgcttc acatgagtcg
       61 cagccgcggt acagcccacc gccaggtcgc cacatgattt cgcgaccgcg tcaatcgcgc
      121 ccgggtccgc agccttgatc gcgccctcta gcatgcacct gctctggttt ttggtatgag
      181 acggctgaac taagccgaag gggtttaagt tcgcttaacc gccttaatca cagtgttagc
      241 acgaccttaa gcgaggccgg cgcaaggcat ccgggtgcgg agcctgcctt cccttgcgcg
      301 cagccgcgag ctgagatgga tcatcatcct ggcgctgatc ggcctggtcc tgcgcatcct
      361 ggcggcgcgg ggaacgctgt ggctggacga ggcctggtcg gcggtgctcg ccaacgatgt
      421 gggcacgccg ctaggcgtgt tcgcccgcat caatcacgac aataaccacc atctgaactc
      481 gctttggctg cagatcgtcg gcatcggcgc gccgccactg atcgcgcgcg cgccggcaat
      541 cgtggcgggc actttctcga tcgtgttcgc agggctgatc ggtgcgcggc gcgggccttg
      601 ggcggggatc gtcacagcgt tgctgttcgc actgtcgcct gtgctggtaa ccttgggatc
      661 ggaagcgcgc ggctatgcgc cgatggcact gatggcgctc atctccgcct ggtatatcga
      721 ccgctatctg gccggggaaa atcaggcgaa ccggccggtg acgatcgcca tctgcttctt
      781 catcggcgct ttgttccagc tgacgatgat ctttgcggca tgcgccctgg tcggctggcc
      841 gctgctggtg ctgtggcggc gcaagggatg gcgtgcgggc gccgtcgaga cggcacggct
      901 gcttggcccg gcggcgggag cactggcgct cgccctcgcc atcgtcgcgc cgccagtgct
      961 ggtgggcggg gccgagttcc gcttcggctc acgacagggt tttgcgctgc ccggctttct
     1021 gcgcggcctg accgacctgc ttggatccat ggtgggatgg acgtcccctc ccctctggct
     1081 gctggtcgcc gcggcggcgc tggcgatcct cggccccgcg ctcggcatga cgcggcgggc
     1141 cggcttttac tggctcgcgc tgatcgcctt tccgctgacc atggccgcgc tgcagcccat
     1201 gaacgcggag catccgcgct atcatctgct cgccgggctg gctttgctgc tgttgctcgg
     1261 cgaatgggtg gcgacgctgg ttcgcgcggg gggatggacg agacttgccg gtgccgccgg
     1321 actgctcgcg ttcacgggcg ccagcctggc ggccgacctc gcgctgatcg gcgccggccg
     1381 cggcgatgtg ggcccggccg tcgaggcgct cgccgcgcgg gcgcccaggg gcgcacgggt
     1441 cctgatcgac ggcgaatcgg gcttggccct ggtgaaggtc gccgcagcgg aagcaggcta
     1501 tccggtcgaa ctcgcgaccg cctgccccgc cgcgcccttc cttttcgccg acactttccc
     1561 gggtgagccg gacaggcttc cgaccgtcca gcgctgcggc gccgcctatc gcgcggtcgc
     1621 gcgcggtcat gccgtcgggc tttccggcca gaactggacg ctttacgaac gggtgggcta
     1681 gaacgcccgt gtgttcttca atttcctcga cgagctgcgg aacgcaggca tcccggcctc
     1741 cctcaaggag catctggtgc tgctggaggc gctcgacctc gaggtgatcg gccgcgatcc
     1801 ggagcaattc tactatctcg ctcgcgccac cttcgtaaaa gacgaagggc tgctcgaccg
     1861 cttcgaccag gtcttcgcca aggtcttcaa gggcatagag acgagctacg gcaccaaggc
     1921 gacgccgatc ccggaggagt ggctgcgcaa ggtcgccgaa ctgtacctca ccgaagagca
     1981 gatgaaggag atcgagaagc tcggctcctg ggaagaaatc atggagacgc tgaagaagcg
     2041 gctcgaggag cagaaagagc ggcaccaggg cggcagcaaa tggatcggca ccggcggcac
     2101 ctcgcccttc ggcgcctatg gctacaaccc cgaaggcgtg cgcatcggcc aggcggaagg
     2161 ccggcacggc cgcgcgatca aggtgtggga caagcgcgag ttcaagaatc tcgattcgac
     2221 gaaggagctc ggcacccgca acatcaaggt cgcgctgcgc cgcctgcgcc ggttcgcgcg
     2281 cgaaggcgcc gcggacgaac tcgacatcga cgcgacgatc gacggcaccg cgcgccaggg
     2341 ctggctcgac atccatatgc gacccgagcg gcacaatgcg gtgaagctgc tgcttttcct
     2401 cgacatcggc ggttcgatgg acccgcacgt aaagctttgc gaagagctgt tctcggccgc
     2461 caccgccgag ttcaagaaca tggagttctt ctatttccac aactgcctct acgaaggggt
     2521 gtggaaggac aatcgccgcc gcttcaccga gcgcacgccg acctgggacg tgctccacaa
     2581 atacggccat gactataagg tgatcttcgt cggcgatgcc tcgatgagcc cttacgagat
     2641 tacgcatccg ggcgggtcgg tcgagcattt caacgaggaa gccggggcgg tgtggatgca
     2701 ccgcgtgacc aacacctatc cggccgccgt ctggctcaac ccggtgcctg agaaacattg
     2761 gggctattcg cagtcgatcg cggcattgcg cgagctgatg gccggccgca tgttcccgct
     2821 gacgctcgac ggcctcgatg acgcgatgcg cgagctgagc cgcaagcttt agcgggcggc
     2881 aagcctggct ttaccccgat tccgccgccc tcgtttcgcc gcgtttgacc ggcgcccggc
     2941 cgcagctctc tttttctact tattcagttg agttatgttt tgcctgcctc gtgagaaggg
     3001 cggccgtgcg ggcccgagtc cccaatctcc ccagtccgca cggccttagc gcaggatctg
     3061 aaggggcgtt ctcgaggaga ccgcaaatga cgcgtggcat tcatgaaagc gaccggcagc
     3121 agcccatcgt cctcaccgtg ccgggcctga acggctcggg cccgtcgcac tggcaatcgc
     3181 tgtgggagca atcccgcccc gacacgtcgc gcatcgagct tggcatgtgg tcgcggccga
     3241 accgcaacgc ctgggtgacc aagatcgacc aggcgatacg cggcagccag ccgccgatcg
     3301 tgctcgccgc ccatagcctc ggttgccttg c
//
LOCUS       DASQVK010000125         2344 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_387288,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000125 DASQVK010000000
VERSION     DASQVK010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2344)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2344)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2344
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387288"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..602)
                     /locus_tag="VE567_02615"
     CDS             complement(<1..602)
                     /locus_tag="VE567_02615"
                     /inference="COORDINATES: protein motif:HMM:NF027558.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4893 domain-containing protein"
                     /protein_id="HYZ47766.1"
                     /translation="MTGAVAFRVPLLALPLLAGCAVARHEAPPPKPAGQVEVIEDPVP
                     IDWKSVVTPADQDRLARAEEAWRQGLAAAARFRAAIAAEGALLDPAAALPRAAPSPGP
                     YLCRVVRLGGRPAFAAFKAFDCFVEAEGELLTMVKASGTQRPAGRLWADGDTRMVFLG
                     ALSRGQEAPPPYAANEQRDVAGFLERIGPFRWRLAVPFPTG"
     gene            685..1020
                     /locus_tag="VE567_02620"
     CDS             685..1020
                     /locus_tag="VE567_02620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008070014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family protein"
                     /protein_id="HYZ47767.1"
                     /translation="MPTILLLLASNIFMTAAWYWHLRGGMEKPLVQVIMISWGIAFVE
                     YCLAVPANRLGYAHGWSAGQLKITQEAIALIIFGVFMIAWLGEPLQWRHLGAFVSLMC
                     AVGFMFVGK"
     gene            1084..1683
                     /locus_tag="VE567_02625"
     CDS             1084..1683
                     /locus_tag="VE567_02625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007714341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI/OmpD-associated family protein"
                     /protein_id="HYZ47768.1"
                     /translation="MASTDPRIDAYIDCQAPFARPILSHLRAAVHRACPDVAETLRWQ
                     MPAFTYKGQILCQMAAFKAHAVFGFWRSREVTGEVESRSAMGQFGRLTSLADLPDDAA
                     LDAMIRKAVALIDSGTKAPRPLKHPKPELALPDDLREALAANPAAQAVYEAFPPGQKR
                     EYCDWVAEAKRPETRAKRVAQAVEWMAEGKRRNWQYERC"
     gene            complement(1688..>2344)
                     /locus_tag="VE567_02630"
     CDS             complement(1688..>2344)
                     /locus_tag="VE567_02630"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017503259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HYZ47769.1"
                     /translation="VGAIGSDARFDLIVAQRRAETGEVEMGELLYAGLEQRGRKLQLL
                     KWQADGRTEWFDAAGVGEKRAGLTRPVAGYQTSGFGMRFHPLLGYNRFHRGVDFGAAY
                     GSPIYAVSDGVVTFAGRHGGHGNFVQLRHGGNMGTGYAHMSRIAVSPGQHVRQGEVIG
                     YVGSTGLSTGPHLHFEVYRGGEAINPGSVSFVTTSLLNGQQLQAFRAKLAQLLTTPAR
                     "
BASE COUNT          400 a          798 c          785 g          361 t
ORIGIN      
        1 ccggtgggaa agggcacggc cagccgccag cgaaatgggc cgatccgctc caaaaagccg
       61 gcgacgtcgc gctgctcgtt cgcggcataa ggcggcggcg cttcctggcc gcggctcagc
      121 gcaccgagaa aaaccatgcg cgtgtcgccg tccgcccaga ggcggccggc cggccgctgt
      181 gtgccgctgg cctttaccat cgtcagcagc tcgccttccg cttcgacgaa gcaatcgaag
      241 gccttgaaag cggcaaaggc gggtcgcccg ccgagccgga ccacgcggca aagatacggt
      301 ccggggctcg gcgcggcccg cggcaaggcg gccgcagggt cgagcagcgc cccttccgcc
      361 gcaatcgcgg cgcggaaacg cgcagcggcg gcaaggccct gacgccacgc ttcttccgcc
      421 cgggcaagcc ggtcctggtc ggcgggcgtg accacgctct tccagtcgat cggcacggga
      481 tcctcgatca cctcgacctg cccggccggc ttgggcgggg gcgcctcgtg tcgggccacc
      541 gcgcacccgg cgagcagcgg cagagcgagg agcggaacgc ggaacgcaac tgcgcctgtc
      601 atcgaaactc cggaaaacgg gctggccggc tcctttaact taccccaagg ggagttgcta
      661 tcattgcccg aacggtaaga acgaatgccg acgatcctgc tgctgctcgc ctcgaacatc
      721 ttcatgaccg ccgcctggta ttggcatctg cgcggcggga tggagaagcc gcttgtccag
      781 gtcatcatga tcagctgggg gattgcgttc gtcgaatatt gcctggccgt tcccgccaac
      841 cggctcggct atgcacatgg ctggagcgcc ggccagctca agatcacgca ggaagccatc
      901 gcgctgatca tattcggcgt gttcatgatc gcctggctcg gggagccgtt gcagtggcgg
      961 catcttggcg cctttgtcag cctgatgtgc gcggtcggct tcatgttcgt gggcaaatag
     1021 cccgctccgg ttgcgcacgc ccccgggaac gcgcaaatct ccgccagtcg aggaggagcc
     1081 gggatggcga gcaccgatcc gcgcatcgat gcctatatcg actgccaggc gccgttcgcg
     1141 cggccgatcc tgagccactt gcgcgccgcc gtgcatcgcg cttgtccgga cgtggcggag
     1201 acgctgcgct ggcaaatgcc ggccttcacc tacaaggggc agattctctg ccagatggct
     1261 gcattcaagg cgcatgcggt gttcggcttt tggcgcagcc gcgaagtcac cggggaggtg
     1321 gaaagccggt cggcgatggg ccagttcggg cggctgacca gcctggccga ccttcccgac
     1381 gatgccgcgc tcgatgcgat gatccgcaag gcggtggcgc tgatcgattc gggcacgaag
     1441 gcgccacgcc ccctcaagca tccaaagccc gagctggcgt tgccggacga tctgcgcgag
     1501 gcgcttgccg ccaacccggc ggcgcaggcc gtttacgagg ctttcccgcc gggccagaag
     1561 cgcgaatatt gcgactgggt cgccgaggcg aagcggccgg aaacccgcgc caaacgcgtc
     1621 gcccaggccg tcgaatggat ggccgaaggc aagcgccgca actggcagta tgaaagatgc
     1681 tgagcgccta gcgcgcgggc gtcgtcagca gctgcgcaag cttcgcccgg aaggcctgta
     1741 gctgttggcc gttcagcagc gacgtggtga cgaagctgac gctccccgga ttgatcgcct
     1801 ctccaccccg atacacctcg aaatgcagat gcgggccggt cgacaggccg gtcgagccga
     1861 cataaccgat cacctcgccc tggcgcacat gctgcccggg gctcaccgcg atccggctca
     1921 tatgcgcata gccggtgccc atgttgccgc cgtggcggag ctggacgaaa ttgccatggc
     1981 cgccatgccg gccggcgaac gtcaccacgc cgtcgctcac ggcgtagatc ggcgagccat
     2041 aggcagcccc gaaatcgacg ccgcgatgaa agcggttata gccgagcagc ggatggaaac
     2101 gcatgccgaa gcctgaggtc tgatagccgg cgacgggcct ggtcagcccc gcccgcttct
     2161 cgcccacgcc cgcggcgtcg aaccattcgg tgcgcccgtc cgcctgccat ttgagcagct
     2221 ggagcttgcg gccgcgctgc tcgagcccgg catagagcag ctcgcccatc tcgacttcgc
     2281 cggtttcggc gcgacgctgg gcaacgatca ggtcgaagcg cgcatccgaa ccgatcgcgc
     2341 cgac
//
LOCUS       DASQVK010000126         2160 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_355235,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000126 DASQVK010000000
VERSION     DASQVK010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2160
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355235"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(305..1171)
                     /locus_tag="VE567_02635"
     CDS             complement(305..1171)
                     /locus_tag="VE567_02635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYZ47770.1"
                     /translation="MAEYRDGYWWNDGLRLHYRDYPGGEDGRPVILCLPGLTRNARDF
                     AGFADRLAPAWRVIAVEFRGRGESAYSRNPASCVPLIYELDVRALIRELELSAFVPIG
                     TSLGGLVTLLMAEGERGQIKGVVLNDVGPEVETAGIARIRSYIGRSGNWPTWLHAARS
                     LAASQRHVYPGYGIEDWLGMAKRLYRLAPNGRIMIDYDPRIAEPMRAAAEQPAVDLWP
                     ALAALENVPGLILRGEQSDVLAPRTVERMLAALPRAEAVTVPGIGHAPTLDEPVAQAA
                     IDRLLAKIVAAG"
     gene            1208..>2160
                     /locus_tag="VE567_02640"
     CDS             1208..>2160
                     /locus_tag="VE567_02640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein adenylyltransferase SelO family protein"
                     /protein_id="HYZ47771.1"
                     /translation="MTTPPQPILEIADMLADPVEPAAFPKTILRFRNDRAAAEIGLDG
                     LSDQGWIRHFGRFEPLPGNLPQPLALRYHGHQFRVYNPDIGDGRGFLFAQLRDDKGRW
                     LDLGTKGSGQTPYSRFGDGRLTLKGGVREILATEMLEALGVNTSRTFSLIETGEELHR
                     GDEPSPTRSAVLVRMSHGHIRIGSFQRLAFLRDREGLKRLTDFSLGTYFGSTGGDPIE
                     LLRHVIEGTARLAASYMAAGFVHGVLNSDNINITAESFDYGPWRFTPTFDPAFTAAYF
                     DAAGLYCFGRQAEAIQWDVMQLAGSLRAIVEVEPMIEELNR"
BASE COUNT          351 a          737 c          713 g          359 t
ORIGIN      
        1 ccgccttcga tcagcggcca cacctcgcgg cccgcgtaaa ggatgggctt gaggcccttg
       61 aaacccattg tcgctgcgtt catcgccagg tctataacag ggacttatct tgcgcgcaca
      121 gaggaaaact tgcggcggcg ggcaagcccc gccagcgcgc taacgcgccg cggatcgatg
      181 cgctcccgcc tgccccgatc tggcacggat tgcggaacct tcccgtcgcg acggcggttt
      241 aggccattgt caagccaatt cggtccgccg ggcttccttc cccccttcgc cggcggaccg
      301 ttttttatcc cgcggcgacg atctttgcga gcagtctgtc gatggcggcc tgggccacag
      361 gctcgtccag cgtcggcgcg tggccgatcc ccgggacagt caccgcttcg gcgcgcggca
      421 gcgcagccag catgcgctcc acggtgcgtg gcgccagcac gtcggactgt tcgccgcgca
      481 ggatcaagcc cggcacgttc tcgagcgctg cgagcgcggg ccaaagatcg acggccggct
      541 gctcggcggc ggcccgcatc ggctcggcga tgcgggggtc gtaatcgatc atgattcggc
      601 cattgggcgc cagccggtag agccgcttcg ccatgcccag ccaatcctcg atcccatagc
      661 cgggatagac atggcgctgg ctggcggcga ggctgcgcgc ggcgtgcagc caagtcggcc
      721 aattgccgct gcgcccgata taggagcgga tccgcgcaat gccggccgtc tcgacctccg
      781 ggccgacatc gttcagcacg acgcccttga tctggccgcg ctccccctcc gccatcagca
      841 aggtcaccag cccgccgagc gaggtgccga tgggcacgaa ggcgctgagc tcaagctcgc
      901 ggatcagtgc gcgcacgtcg agttcgtaga tcagcgggac gcatgaggca gggttgcggc
      961 tataggcgct ctcgccacgg cctcggaact cgaccgcgat cacccgccag gcgggcgcga
     1021 ggcggtcggc gaacccggcg aaatcgcgcg cgttgcgcgt gaggccgggc aagcaaagga
     1081 tcaccggccg cccgtcctcg ccacccggat agtcgcggta atggaggcgc aggccgtcat
     1141 tccaccaata gccgtctcga tattcggcca tgcttgtccc cttgcgtcgg cggccacata
     1201 tcgcggcatg accacgcccc cgcaacccat cctcgaaatc gccgacatgc ttgccgatcc
     1261 ggtcgagccg gcggcgttcc cgaagaccat tttgcggttc cgcaacgacc gggcggcagc
     1321 ggagatcggg ctcgacgggc tctcggacca gggctggatc cggcatttcg ggcggttcga
     1381 gccgttgccg ggcaatctgc cccagccgct ggcgcttcgc tatcacgggc accaattccg
     1441 cgtatacaat ccggatatcg gtgacgggcg cggctttctg ttcgcgcaat tgcgggacga
     1501 taagggccgc tggctcgatc tcggcaccaa gggctcgggg cagacgccct atagccggtt
     1561 cggcgacggg cggctgacgc tgaaaggcgg ggtgcgcgag attctcgcaa ccgagatgct
     1621 ggaagcgctg ggcgtgaaca cctcgcgcac cttctcgctt atcgaaacgg gcgaggaatt
     1681 gcaccggggc gacgagccct cgcccacccg ctccgcggtg ctggtgcgga tgagccacgg
     1741 ccatatccgc atcggaagct ttcagcggct ggccttcctc cgcgaccggg aggggttgaa
     1801 gcgcctcacc gacttcagcc tgggcaccta tttcggctcc acgggcggcg acccgatcga
     1861 gctgctgcgc catgtgatcg aaggcacggc gcggctggcg gcgagctata tggccgccgg
     1921 cttcgtccac ggcgtgctga actcggacaa catcaacatc actgccgaaa gtttcgacta
     1981 cgggccgtgg cggttcacgc cgaccttcga cccggccttc accgcagcct atttcgacgc
     2041 ggccgggctc tattgcttcg ggcgccaggc ggaagcgatt cagtgggacg tgatgcaact
     2101 cgccggcagc ttgcgcgcga tcgtcgaagt cgagccgatg atcgaagagc tgaaccggtt
//
LOCUS       DASQVK010000127         6379 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_260904,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000127 DASQVK010000000
VERSION     DASQVK010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6379
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260904"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            6..545
                     /locus_tag="VE567_02645"
     CDS             6..545
                     /locus_tag="VE567_02645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010219411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HYZ47772.1"
                     /translation="MTAKTGGVGDELNQGGAGNGFAIVSGTPRFDEITIDPQNFDGFS
                     KLQFFLAYQAKTPNPTSPPPQLNIDYGTFLLSYTLVGGGSGSTLVSIQNGNQRFQLFG
                     DAGEVFSSVTLSKLKGSAHDGPGSPFVVNAAFDNIRQISFEAAASVPEPASWALMLGG
                     FGVLGVAARRRRRTVVTFA"
     gene            723..1430
                     /locus_tag="VE567_02650"
     CDS             723..1430
                     /locus_tag="VE567_02650"
                     /inference="COORDINATES: protein motif:HMM:NF033947.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cistern family PEP-CTERM protein"
                     /protein_id="HYZ47773.1"
                     /translation="MIRTLPIAVAALAVAAPASALTIVNNTAQVSAADLNKSFTVRTD
                     GSTSNSDGLFATLVFKLTKVTATGTGTKFEFSYSVTNASVAPAANSRLGQFGFDITGT
                     PGAGLTLSSGATDYFKLPGNNNGNFNGLGHREICMNAASSSNCNGGANDGILSGLANS
                     KIGKLVFTYANSTQSVTFSNFATRWQAGQNGSSASGPGVSITSVPEPATWAMMIGGFG
                     LLGAAVRRQRRTAAAVA"
     gene            1566..2213
                     /locus_tag="VE567_02655"
     CDS             1566..2213
                     /locus_tag="VE567_02655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extensin family protein"
                     /protein_id="HYZ47774.1"
                     /translation="MARGITVTIAASLALAACAGGEDRRAAPPQPPTRMTLDSPQVRL
                     CLANLTQLARFQTLPDRDYGGGCYSFGSVRLTEAGVPISNLGAMNCSLAGTFAGWVRN
                     GVMPAARLYLGAELARVETFGSYSCRNINGQLAGRLSEHASANAVDVSGFVLADGRRI
                     TIKQDWNSPDPSIRGFLLVIRTSACRRFKTVLSPDYNALHANHFHFDMGRGPFCK"
     gene            2252..3124
                     /locus_tag="VE567_02660"
     CDS             2252..3124
                     /locus_tag="VE567_02660"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0009691 - cytokinin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LOG family protein"
                     /protein_id="HYZ47775.1"
                     /translation="MTDTRVPARVFPNAQDEAEATRNLIQTPQTTHPAYRLAFQDTDF
                     LLREDLRPVRFQLELLKPELLLDEAQIGSTFVFYGSARIPEPAKAELLREAATDDFGK
                     LVAERLIDKARYYDVARELARLASHCPRDLEDRRHFVVCSGGGPSIMEAANRGADDAG
                     AESIGLNIVLPHEQTPNEYVTPSLSFQFHYFALRKMHFLLRARAVAVFPGGFGTFDET
                     FELLTLIQTGKISPIPVLLYGREFWERVVNFEALAEEGVISRKDLDLFHFVETAQEGW
                     DLVRQWWRDEPLCP"
     gene            3145..4206
                     /locus_tag="VE567_02665"
     CDS             3145..4206
                     /locus_tag="VE567_02665"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYZ47776.1"
                     /translation="MGGWSSPWCSPLSPAFLASGDWSSSGGVGAAEGVGVTVGLGLGA
                     GEIVGEGEGRGWRSGAGGLWNAAKAAMLAAGSKSVRIRTSSFHSVRRRCSVPNGTMAS
                     PSRLAAGMTSKYATSLLPRAEERRGRPLADRLHVIAFGAIGWPWLLQSLSGGERREKR
                     RLLARLGLPGNALPHLGSWKADTSLLHRIVDTIKALRPRTMVELGAGASTLVAAKALA
                     LNGGGRLVSFDQHADFVAATAAWLAEHGLAADLRSAELVPAPTGWPGLWYDLSHLPEH
                     IDLLLVDGPPWSVHPFVRAAAETLFDRIPVGGVVLLDDAMRPGERVVARRWRRRWPNF
                     RFDIDKSGAKGTLIGSRLR"
     gene            complement(4207..5271)
                     /gene="aroC"
                     /locus_tag="VE567_02670"
     CDS             complement(4207..5271)
                     /gene="aroC"
                     /locus_tag="VE567_02670"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HYZ47777.1"
                     /translation="MSFNSFGRIFRFTTWGESHGPAIGAVVDGCPPGLALSEADIQPW
                     LDKRRPGQSRFTTQRQEPDQVRILSGVFEGRTTGTPISLIIDNVDQRSKDYSDVAKAY
                     RPGHADYAYDAKYGFRDYRGGGRSSARETAARVAAGAVARLVIPEVSIRAWVAEVGGD
                     AAGTFDPAQIDANPFFCPDAAAAARWETLIDSARKAGSSLGAIVACEASGVPAGWGAP
                     LYAKLDAELAAAAMSINAVKGVEIGDGFAAARLRGEENADPMRPGDDGPVFDSNHAGG
                     IAGGIATGQPIRLRVAFKPTSSILTPVETITREGEATEIATKGRHDPCVGIRGAPVVE
                     AMMALVLADQKLLHRAQCGG"
     gene            complement(5271..6074)
                     /gene="fabI"
                     /locus_tag="VE567_02675"
     CDS             complement(5271..6074)
                     /gene="fabI"
                     /locus_tag="VE567_02675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004318 - enoyl-[acyl-carrier-protein]
                     reductase (NADH) activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HYZ47778.1"
                     /translation="MNTLMHGKRGLIMGLANERSLAWGIAQKLREAGAELAFSYQGEA
                     LEKRVRPLAEQLGSDFLLDCDVSDMAALDRTFAELGERWPTIDFVVHAIGYTNKEALR
                     GRYCDIGLDDFLLTMNISVYSFTAVAQRAAAMMPNGGAMLTLSYYGAEKVVPHYNVMG
                     LAKSALETSVKYLANDLGPDGIRVNAISAGPIKTLAASGIGDFRYILKWNELNSPLRR
                     NVTIEDVGGAALYLLSDLAAGVTGETHHVDAGYHVVGMKQKDAPDIALA"
     gene            complement(6071..>6379)
                     /locus_tag="VE567_02680"
     CDS             complement(6071..>6379)
                     /locus_tag="VE567_02680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018250645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhjD/YihY/BrkB family envelope integrity
                     protein"
                     /protein_id="HYZ47779.1"
                     /translation="FYLLFYVMTPRRYRDRTCRKWPGPLFIAVWWLVVTSLLPSVLTL
                     LSNYDLTYGSLAGVMIALVYFFTLGLGVVFAAHLNAALAEVPRSALKGSDSDPEDGVT
                     "
BASE COUNT         1037 a         2144 c         2089 g         1109 t
ORIGIN      
        1 tcgacctgac cgccaagacc ggcggcgtgg gagatgagct gaaccaaggg ggcgccggca
       61 acgggttcgc gatcgtcagc ggcacaccgc ggttcgacga gatcacgatc gatccgcaga
      121 atttcgatgg cttttcgaag ctgcagttct tcctggctta tcaggccaag acaccgaatc
      181 cgacgtcgcc tccgccacag ctgaacatcg actatggcac gttcctgctg tcctacacgc
      241 tcgtgggcgg cggcagcggc agcacgctgg tgtcgatcca gaatggcaat cagcggttcc
      301 agctgtttgg cgacgccggc gaagtcttct cgtccgtcac cttgagcaag ctcaagggct
      361 cggcgcacga cggcccgggc agcccgttcg tcgtcaatgc cgcgttcgac aatatccgcc
      421 agatttcgtt cgaggcagcg gcctcggttc cggagccggc gagctgggcg ttgatgctcg
      481 gcggttttgg cgtgcttggc gtcgcggcgc gtcgtcgccg gcggaccgtc gtcaccttcg
      541 cctgaaccgg cgatcgtcaa cggaaagggc gcctgcgggc gcccttttca attgcgcccc
      601 gtccggaatc gggacggcgt taagcctgtt tgcggctcgc tgcatcgtaa acgcggtggt
      661 aagaatggct tgtggacgcg gcctgccgtt caggcctgcc gcttggagtt gggggaaata
      721 tagtgattcg tacgcttccg atcgcggtcg ccgcgttggc cgttgctgcg cctgcgagcg
      781 cgctgacgat cgtcaacaac acggcgcagg tcagcgctgc cgacctcaac aagagcttca
      841 cggtgcgtac cgatggctcg acctccaatt cggacgggct gttcgccacc ctggtgttca
      901 agctcaccaa ggtgaccgca acaggtacgg gcacgaagtt cgagttcagc tatagcgtta
      961 cgaacgcctc ggtggctcca gccgcgaatt cccggctcgg ccagttcggc ttcgatatca
     1021 ccggcacacc cggcgccggc ctgactctct ccagcggcgc gaccgactat ttcaagcttc
     1081 ccggcaacaa taacggcaat ttcaacggcc tgggtcaccg ggagatctgc atgaacgccg
     1141 ccagcagcag caactgcaat ggcggcgcca acgacggcat tctgtcgggc ctggcgaact
     1201 cgaagatcgg caagctggtc ttcacctacg cgaactcgac ccaatcggtc acgttcagca
     1261 atttcgcgac acgctggcag gcaggccaga acggttcctc ggcgagcggg cctggcgtgt
     1321 cgatcacctc ggtgcccgag ccggcgacct gggcgatgat gatcggcggc ttcggcctgc
     1381 tcggcgccgc agtgcgccgt caacggcgga ctgccgccgc ggtcgcctga caataagcca
     1441 tattcggggg gtgggggcgt cttcgggcgc ccccttttct ttgcctgatc ggttcgactc
     1501 gcacccggca cggctggccg cccgcccgat tctcgtccgc cccgaattcg ggcagaatcg
     1561 gggtgatggc gcggggcata acggtcacga tcgcggcaag cctggctctc gccgcctgcg
     1621 cgggcggcga ggaccgccgc gccgccccac cccagccgcc gacccggatg acgctcgatt
     1681 cgccccaggt gcggctctgc ctcgccaatc tgacgcaact cgcgcggttc cagacattgc
     1741 ccgaccgaga ttatggcggc ggctgctaca gtttcggcag tgtccgcctg accgaggccg
     1801 gcgtgcccat cagcaatctc ggcgcgatga attgctcgct tgcgggcacc tttgccggct
     1861 gggtccgcaa cggcgtgatg ccggcggcgc gcctgtatct cggggccgag ctggcgcggg
     1921 ttgaaacatt tggcagctat tcctgccgca atatcaatgg ccagctcgcg ggccggctat
     1981 ccgagcatgc ctccgccaac gccgtagacg tcagcggctt cgtgctggcg gacggccgcc
     2041 ggatcacgat caagcaggac tggaactcgc ccgacccatc gatacgcggc ttcctgctcg
     2101 tcatacgaac atcggcctgc cgccggttca agaccgtgct cagccccgat tacaatgcgc
     2161 tgcacgccaa tcacttccac ttcgacatgg ggcgcgggcc gttctgcaag tgattgcggc
     2221 cccgggccat aacgcctaag ccgcgccgcc tatgaccgac actcgcgttc ccgcccgcgt
     2281 cttccccaat gcgcaggacg aggccgaagc caccaggaat ctcatccaga ctccgcagac
     2341 gacgcacccg gcctatcggc tggcgttcca ggatacggat ttcctgctgc gcgaggatct
     2401 ccggccggtc cgcttccagc ttgagctgct caagcccgaa ttgctgctcg acgaagcaca
     2461 gatcggttcg actttcgtct tctacggctc ggcgcggatc cccgaacccg ccaaggccga
     2521 gctattgcgc gaggcggcga cggacgattt cggcaagctc gtcgccgagc ggctgatcga
     2581 caaggcgcgc tattatgatg tggcgcggga gctcgcccgg ctggccagcc actgtccgcg
     2641 ggacctggag gacaggcgcc atttcgtcgt ctgctcaggc ggcggcccgt cgatcatgga
     2701 agcggcgaac cgcggcgccg acgatgcggg cgcggaatcg atcggtctca acatcgtgct
     2761 gccgcacgag cagacaccca acgaatatgt gacgccgtcg ctcagcttcc aattccacta
     2821 tttcgcgttg cgcaagatgc acttcctgct gcgcgcacgc gcggtcgcgg tgttcccggg
     2881 cggcttcggc acgtttgacg aaacgttcga gctgttgacg ctgatccaga ccggcaagat
     2941 ctcgccgatc ccggtgctgc tatacgggcg cgaattctgg gagcgcgtcg tgaatttcga
     3001 ggcgcttgcc gaagaaggcg tgatcagccg caaggatctc gaccttttcc atttcgtcga
     3061 gaccgcccag gaaggctggg accttgtccg ccaatggtgg cgcgacgagc cgctttgccc
     3121 ttgatgcgct agccgcgtgg cgaattgggc ggctggtcgt cgccctggtg ttcgccgctc
     3181 tcccccgcat tccttgcttc cggcgactgg tcgtcgagtg gcggcgtcgg cgcagctgaa
     3241 ggagtcggcg tcacggtcgg gctcggcctg ggagccggcg agatcgtcgg cgaaggcgag
     3301 ggccgcggct ggcgctcggg cgcgggcggg ctctggaatg cggccaaggc ggcaatgctg
     3361 gcggcgggga gcaagagtgt gcgcatacgg acctcctcgt tccacagcgt ccggcgccgg
     3421 tgctcggttc cgaatggaac gatggcttcg ccctcgcgtc ttgccgcagg catgacctcc
     3481 aaatacgcaa ccagcctgtt gccgcgggcc gaggagagac gcggccggcc ccttgccgat
     3541 cggctccatg tcatcgcatt cggcgcgatc ggctggccct ggctcctgca aagcctgtcg
     3601 ggcggcgagc gacgggaaaa gagacggctg ctcgcccggc tgggcctgcc aggcaacgcc
     3661 ttgccccatc tcgggagctg gaaagccgat acgtcactgc tccaccgcat cgtcgacacg
     3721 atcaaggcct tgcggccccg cacgatggtg gagctcggcg ccggggcctc gacattggtt
     3781 gcggccaagg cgctggcgct gaacggcggc gggcggctgg tcagcttcga ccagcatgcg
     3841 gatttcgttg ccgccaccgc cgcctggctg gccgaacacg gcctcgcagc cgatctgcgg
     3901 tccgccgaat tggtgccggc cccgaccgga tggcctggcc tgtggtacga cctatcgcac
     3961 ctgccggagc atatcgacct gctgctcgtc gacgggccgc cctggagcgt tcatccgttc
     4021 gtgcgcgccg cggccgagac gctgttcgat cgcatacccg tgggcggcgt cgtgctgctc
     4081 gacgacgcta tgcgccccgg cgaacgcgtc gtggcgcggc gctggcggcg gcgctggccc
     4141 aatttccgtt tcgacatcga caagagcggc gccaaaggca cgctcatcgg gtcacgcttg
     4201 cgctgatcag cccccgcact gggcccggtg cagcagcttc tggtccgcca acaccagcgc
     4261 catcatcgct tctactaccg gcgcgccgcg gatgccgaca caggggtcgt ggcggccttt
     4321 ggtggcgatc tcggtcgcct cgccctcgcg cgtgatcgtc tcgaccggag tcaggatcga
     4381 gctggtcggc ttgaaggcca cgcgcaggcg gatcggctgg ccggtcgcaa tgccgcccgc
     4441 gatcccgccg gcatggttgc tgtcgaagac aggaccatcg tcgccgggcc gcatgggatc
     4501 ggcattctcc tcgccgcgca gccgggcagc ggcaaagccg tccccgatct cgacgccttt
     4561 gacggcgttg atcgacatgg ccgcggcggc aagctcggca tcgagcttgg cgtaaagcgg
     4621 ggctccccag ccggcgggca cgcccgacgc ttcgcatgcc acgatcgcgc ccagcgaaga
     4681 gccggccttg cgcgcggaat cgatcagcgt ctcccagcgg gctgccgccg ccgcatcggg
     4741 gcagaaaaac ggattggcgt cgatctgcgc tggatcgaac gtccccgccg catcgccgcc
     4801 gacttccgcc acccaggcgc ggatggagac ttccgggatc acgagccgcg ccaccgctcc
     4861 tgccgccacg cgcgccgccg tctcgcgtgc cgaggagcgg ccgccgccgc gatagtcccg
     4921 aaacccgtat ttggcgtcat aggcatagtc ggcatggccg ggccgatagg ccttggccac
     4981 gtcggaatag tccttcgatc gctggtcgac attgtcgatg atcaggctga tcggcgtgcc
     5041 ggtcgtccgc ccctcgaaca cgcccgagag gatgcgaacc tggtccggct cctgccgctg
     5101 ggtggtgaag cgcgactggc ccggccggcg cttgtcgagc cagggttgga tatctgcctc
     5161 agacagagcg agccccggcg gacagccgtc caccacggcg ccgatcgccg gcccgtggct
     5221 ttcgccccag gtcgtgaacc ggaagatgcg gccgaaactg ttgaagctca tcaggcgagc
     5281 gcgatgtccg gcgcgtcttt ctgcttcatg ccgaccacat ggtagccggc gtcgacatga
     5341 tgcgtctcgc cggtcacgcc ggcggcaagg tcgctcagca gatagagcgc ggccccgccg
     5401 acatcctcga tcgtcacatt gcggcgcagc ggcgagttca gctcgttcca tttgaggatg
     5461 tagcggaaat cgccgatgcc cgacgcggcg agcgtcttga tcgggccggc ggaaatggcg
     5521 ttcacgcgga tgccgtcggg gccgaggtcg ttcgcgagat atttgacgct cgtctccagc
     5581 gccgacttgg cgaggcccat gacgttgtaa tggggaacga ccttttcggc gccataataa
     5641 gagagcgtca gcatcgcgcc gccgttcggc atcatcgccg ccgcgcgctg ggcgacggcg
     5701 gtgaagctgt acacgctgat gttcatcgtc agcaggaaat cgtcgaggcc gatgtcgcaa
     5761 tagcgtccgc gcagtgcttc cttgttcgtg tagccgatcg catgaacgac gaaatcgatc
     5821 gtcggccagc gctcgccgag ttcggcgaag gtgcgatcga gcgccgccat gtcggaaacg
     5881 tcgcagtcga gcaggaagtc ggagccgagc tgctcggcca gcggccgcac gcgtttctcc
     5941 aacgcctcgc cctggtagct gaaggcgagc tcggcgccgg cctcgcgcag cttctgcgca
     6001 atcccccatg ccagcgagcg ctcattggcg aggcccatga tcagcccccg cttgccgtgc
     6061 atcaatgtgt tcacgtaacc ccatcctccg ggtctgaatc cgatcccttt agcgcgctcc
     6121 gcggaacttc cgccagtgca gcgttcaggt gcgctgcaaa gacgaccccc aggcccagcg
     6181 tgaagaaata gacgagcgcg atcatcacgc cggccaggct gccataagtg aggtcgtaat
     6241 tgctcagcag cgtgagcacg gagggaagca gcgacgtgac gaccagccac cacaccgcga
     6301 tgaacagcgg gccgggccat ttccggcagg ttcggtcgcg atagcgccgc ggcgtcatca
     6361 cgtagaagag caggtagaa
//
LOCUS       DASQVK010000128         5109 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_387503,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000128 DASQVK010000000
VERSION     DASQVK010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5109
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387503"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..319)
                     /locus_tag="VE567_02685"
     CDS             complement(<1..319)
                     /locus_tag="VE567_02685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47780.1"
                     /translation="MRKLFTALALTATTLTGVAAPASAQYYGTYGSGYVTPNTSGYSA
                     SGYYRDRYGVLRDRYGNRVDETAAVGANASGFYVDGRGNLRDRRGRIVTTARAERNGW
                     YRDR"
     gene            complement(395..1456)
                     /gene="recF"
                     /locus_tag="VE567_02690"
     CDS             complement(395..1456)
                     /gene="recF"
                     /locus_tag="VE567_02690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HYZ47781.1"
                     /translation="MIARLSLSDFRSYADAVIVPGPGLVVLTGENGAGKTNLLEAVSL
                     LAPGRGLRGVTLSEMARQGGPGGFTVAARLDDGVEIGTGALAAAPERRVVRINGVAAT
                     ANALAERLSVLWLTPAMDRLFTDSAGGRRRFLDRLVLALEPAHAHHAARYEAAMRART
                     RLLTGDAPADPAWLTALEAQMDEHGRAVAEARERTVAALAARIAAEPDSIFARAGLAL
                     EGWQADAHWSLATLRGRDAAAGRATEGPHRQDLHVRHVAKRQAAALCSTGEQKALLIG
                     LVLAHAALVAERIGRPPILLLDEIAAHLDPRRRAALLERLAAQGGQVWMTGTEPSLFA
                     DAPEGTNRLIVENGGIRPD"
     gene            complement(1489..2250)
                     /locus_tag="VE567_02695"
     CDS             complement(1489..2250)
                     /locus_tag="VE567_02695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Coq4 family protein"
                     /protein_id="HYZ47782.1"
                     /translation="MSATLAPAQLPIPGTSTRRDWKGALVALRRLLANGDDTVQVFRI
                     MRALNADTAARNYRKLLTLPGGGRIAYRRTELAELFSNPAYIAAFKPGTVGAAYRDFL
                     NRTGYSAMGLAQVSMADNVPHDAEHPHAWFGRRERDIHDIWHVLTGYQADEPLGEACL
                     VAFSYAQTRGLGWAAIAIGASLKARRVTGRWTFARAVIEGYRHGKRAAWLSAEDYEQL
                     MHEPIHQARQRLGLRQPVKYRQAQAELAEMGKTGL"
     gene            2329..2802
                     /locus_tag="VE567_02700"
     CDS             2329..2802
                     /locus_tag="VE567_02700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007689492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47783.1"
                     /translation="MRALLIIALMAAAPALAQPAGHVAQDALMTPAEDVNVKKKEIPP
                     VLRSAQDDPYSLEAARNCTQLRAGLSDLDAVLGPDFDSGILAKKNTASRVAKSVVGSF
                     IPFRGVVREVSGAAGAERRYNAAVDAGIARRGFLRGIARMRGCRPPEPPPLPPAK"
     gene            complement(2808..3443)
                     /locus_tag="VE567_02705"
     CDS             complement(2808..3443)
                     /locus_tag="VE567_02705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004210014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HYZ47784.1"
                     /translation="MDGDARTALDALIRERREDYASLSRLLGRNPAYIQQFIKRGVPK
                     KLDEEDRRTLARYFGVSEALLGGPGPQSNELISVPVLDVQASAGPGAFADTERPRARM
                     RFDPSWLRGLKLDPARLSVIQVTGESMSPTLSDGDDILVDQSDAAARLRDGIYVLRID
                     GALNVKRLIVDRASRRVSVKSDNPDYASWPELDPARLDVIGRVLWAGRRLG"
     gene            3537..3707
                     /locus_tag="VE567_02710"
     CDS             3537..3707
                     /locus_tag="VE567_02710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007683166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47785.1"
                     /translation="MILRKIERYLDDSGMSATAFGRAVAHDPRLVHDLRRGREPGPGM
                     LRRISSFIETPR"
     gene            3704..3970
                     /locus_tag="VE567_02715"
     CDS             3704..3970
                     /locus_tag="VE567_02715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011540546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47786.1"
                     /translation="MRPADPHRALIRALARHFPGLLVLASRTEPWASITFTGTRHILT
                     CADGIDLARIEDAELPLPGHFAADVRVSRDGERLTIEALTIEDV"
     gene            4061..5038
                     /locus_tag="VE567_02720"
     CDS             4061..5038
                     /locus_tag="VE567_02720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IB"
                     /protein_id="HYZ47787.1"
                     /translation="MPGITRRRFGRAWGYFAPDGNRITDRDEIDRLNRVGLPPAYRDA
                     WFCPDPNGHIQAIGWDERGRKQYRYHPDFRAAQEAVKYDRCSAFGHALPRLRRQAEKD
                     LARPGLGHDKACAAVVRLLDLSKVRIGNEAYAQENKSFGATTLRKRHAKVKGGKLQLE
                     FRAKSGKMRRLSISDRALLRFAKKMQDLPGQHLFRWCDGDGQPHPVTSTDVNDYIRRA
                     MRADFTAKHFRTWGASVIAFRVLFDTHGQVTLREMLEIVSEQLGNTPTIARKSYVHPA
                     LIDLAKSQALWDPSMRLPRTMRYLDRYERGLIAFLDQLDEARTEQRQAA"
BASE COUNT          880 a         1684 c         1731 g          814 t
ORIGIN      
        1 tgcggtcgcg ataccagccg ttacgctcgg cgcgggcggt ggtcacgatc cggccgcgac
       61 ggtcgcgcag gttgccgcgg ccgtcgacat agaagccgct tgcattcgcg ccgaccgcgg
      121 cggtctcatc gacgcggttg ccatagcgat cgcggagcac gccatagcgg tcgcgataat
      181 agccgctcgc cgaatagccg ctggtattgg gcgtcacgta acccgagcca taagtgccgt
      241 aatattgcgc tgaagccggc gccgccacgc cggtaagcgt ggtcgccgtc aaggcaagcg
      301 cggtaaacaa cttacgcatg actatcctcc tctttaccgt gtcttcaacg agaaggggca
      361 atctgcggtt gcatgaaccg aaaacaacga gccgttaatc gggacggatg ccgccatttt
      421 ccacgatgag ccggtttgtt ccttccggag catcggcgaa cagcgacggc tcggtgccgg
      481 tcatccacac ctgcccgcct tgcgcggcca gccgctcgag caatgctgcg cgccggcggg
      541 ggtccaggtg cgcggcgatt tcatcgagca ggagaatggg cgggcggccg atccgctcgg
      601 cgaccagcgc ggcatgggcg agcacgaggc cgatcagcag cgctttctgc tcgccggtcg
      661 aacaaagggc cgccgcctgc cgcttcgcga catgccggac gtgaagatcc tgccggtgag
      721 ggccttcggt tgcgcgcccg gctgccgcgt cgcgcccgcg cagggttgca agagaccagt
      781 gagcatcggc ctgccagcct tcgagggcca gcccggcgcg ggcgaaaatg ctgtcaggct
      841 cggcggcgat gcgggcggcg agcgcggcga cggtgcgctc ccgggcttcg gcgacggcgc
      901 gaccatgttc gtccatctgc gcttccaggg cagtgagcca ggccgggtca gcgggcgcgt
      961 cgcctgtgag caggcgcgtg cgggcgcgca tcgccgcctc atagcgcgcc gcatgatgcg
     1021 cgtgcgccgg ctcgagcgcg aggacgagcc ggtcgagaaa gcgccggcgg cccccggcgc
     1081 tgtcggtgaa cagccggtcc atcgccggag tgagccacag caccgacagg cgctcagcga
     1141 gcgcattggc ggtagctgcg acgccgttga tccgtaccac ccgccgctcg ggcgcggccg
     1201 ccagcgcgcc ggtgccgatc tcgacgccgt catccagccg agccgcgaca gtgaagccgc
     1261 cgggaccgcc ctgccgcgcc atctctgata gcgtcacgcc gcgcaggccg cggcccggcg
     1321 cgagcagcga cacggcttcc agcaggttcg tcttccccgc tccattctcg ccggtcagca
     1381 cgaccagtcc cggcccgggg acgatcactg catcggcata ggaacggaaa tcggacaggg
     1441 agaggcgggc gatcacaggc ccgctctatc ggccaggaga gccgagaact acagccccgt
     1501 ctttcccatt tcggcgagtt cggcctgagc ctgccggtat ttgaccggct gccggagtcc
     1561 caagcgctgg cgcgcctggt ggatcggctc gtgcatcagc tgctcgtaat cctcggccga
     1621 gagccaggcg gcgcgcttgc cgtggcgata gccttcgatg accgcgcgag cgaaggtcca
     1681 gcgccccgtg acgcgcctgg ccttgagaga ggcgccgatc gcgatcgcgg cccagccaag
     1741 gccccgagtc tgggcatagg agaatgccac cagacaggct tcgcccagcg gctcgtcggc
     1801 ctgatagccg gtaagcacgt gccagatgtc gtgaatgtcg cgctcgcgcc ggccgaacca
     1861 ggcatggggg tgctcggcgt catgcggcac attatcggcc atcgagactt gggccagccc
     1921 catcgcggaa tagccggtgc gattcaggaa gtcgcgatag gcggcaccga ccgtgccggg
     1981 tttgaaggcg gcaatatagg ctgggttgct gaacagctct gccagctcgg tgcggcgata
     2041 ggcgatgcgg cccccgccgg gcagggtcag cagcttacgg taattgcgcg ccgcggtatc
     2101 cgcgttcaac gcgcgcatga tccggaacac ctgcaccgta tcgtcgccat tggcgagcag
     2161 gcggcgcagt gccacgagcg cgcctttcca gtcgcgccgc gtggacgtgc cggggatcgg
     2221 gagctgggcc ggggcaagag ttgctgacat gtttgtcagt atagcgtgcc aggcggcgtt
     2281 gcgcaagatt ggcgggcatg agatgcttgg catcgggaag gaaagattat gcgcgcgctt
     2341 ctgatcatcg cgttgatggc ggctgccccg gcgctcgcgc agccggccgg ccatgtcgcg
     2401 caggatgcgc tgatgacgcc ggcggaagat gtgaacgtca agaaaaagga gatcccgccg
     2461 gtccttaggt ccgcacagga cgatccctat tcgctagagg ccgcacgcaa ttgcactcag
     2521 ctccgcgctg gcctgtcgga tctggatgca gtgctgggcc cggatttcga ttcagggata
     2581 ctggccaaga agaataccgc gagccgcgtc gccaaaagcg tggtcggcag cttcatcccg
     2641 ttccgcggcg tggtccgcga agtcagcggc gcggcgggtg cggagcggcg ctacaatgcc
     2701 gcagtggatg ccgggatcgc ccggcgcggt ttcttgcgcg gcatcgcgcg gatgcgcggc
     2761 tgcaggccgc ccgagccgcc gccgctcccg ccggcgaaat agcagtctca gccgagccgc
     2821 ctgccggccc agagcacgcg gccgatcacg tccaggcgcg cagggtcgag ctcgggccag
     2881 ctcgcatagt ccggattgtc gctcttcact gaaacgcgac ggctggcgcg gtccacaatc
     2941 agccgcttca cgttgagcgc gccgtcgatc cgcagcacat agataccgtc gcgcaggcgt
     3001 gccgcggcgt cgctctggtc gaccagaatg tcatcgccgt cgctgagcgt gggcgacatg
     3061 gactctcccg tcacctggat caccgacagc cgcgccggat cgagcttcag accgcgcagc
     3121 cagctcgggt cgaagcgcat ccgtgcgcgc ggccgctcgg tgtcggcaaa ggcgccgggt
     3181 ccggcggacg cctgcacgtc gagcacgggc acggagatca gctcattgct ctgcgggccg
     3241 ggcccgccga gcagcgcctc gctgaccccg aaatagcggg cgagcgtgcg ccggtcttcc
     3301 tcgtccagct tcttgggcac gccgcgcttg atgaactgct ggatataggc cgggttgcgg
     3361 ccaagcagcc gggaaagcga ggcatagtcc tcccgcctct cccggatcag cgcgtcgagc
     3421 gcggtgcggg cgtccccgtc catagcctct ccatagcata ggaattttcc tagacaaata
     3481 ggaaaatacc tatgagatag gaaaattcct attcaacgcg agtcggaggg agtggaatga
     3541 tcttgcggaa gatagagcgt tatctggacg acagcggcat gtccgccacg gcctttgggc
     3601 gggcggtggc gcacgatccg cggctggtgc acgatcttcg gcgcggccgc gagcctggcc
     3661 ccggcatgct gcggcgaatc agcagcttta tcgagacgcc gcgatgaggc ctgccgatcc
     3721 gcatcgggcg ctcattcgcg cactcgctcg ccattttccc ggcctgctgg tgctcgccag
     3781 ccggacggag ccctgggcga gcatcacttt caccggcacg cgccatatcc tcacctgtgc
     3841 ggacgggatc gatctggcga gaatcgagga cgccgaattg ccgcttccgg ggcatttcgc
     3901 agcagacgtc cgggtgagcc gggacggcga acggctgacg atcgaggctc taactatcga
     3961 agatgtctga aagagtagcg ggaacgcgga cggcgcgtcg ggcattcctt cgcgcgtggc
     4021 cgatctcagc acttcgcatc tgacctttgt cgacgacgag atgcctggga tcacgcggcg
     4081 ccgcttcggc cgcgcctggg gctatttcgc ccctgatggc aaccgcatca ccgatcggga
     4141 cgagatcgac cggttgaacc gcgtgggcct gccgcctgcc tatcgcgatg cctggttctg
     4201 ccccgatccc aacgggcata tccaggcgat cggctgggac gagcgggggc ggaagcaata
     4261 tcgctaccac cccgacttcc gcgccgccca ggaagcggtg aagtatgacc gctgctccgc
     4321 tttcggccac gccctgccgc ggctgcggcg acaggccgaa aaggatctgg cacggccggg
     4381 gctgggccat gacaaagcgt gcgccgccgt tgtgcggctg ctcgatctgt ccaaggtccg
     4441 gatcggcaac gaggcctatg cgcaggaaaa caagagcttc ggcgccacca cgctcagaaa
     4501 gcgtcacgcc aaggtgaagg gcggcaagct gcagctggaa ttccgggcca agtcgggcaa
     4561 gatgcggcgg ctgtcgatca gcgaccgcgc gctgctccgg ttcgcgaaga agatgcagga
     4621 tttgccgggc cagcacctgt tccggtggtg cgacggggac ggccaacctc atccggtcac
     4681 ctcgaccgac gtcaacgact atatccgccg cgcaatgcgc gcggatttca ccgccaagca
     4741 tttccgtacc tggggggcaa gcgtgatcgc ctttcgcgtg ctgttcgaca cgcatggcca
     4801 ggtcacgctc agggaaatgc tcgagatcgt ctccgaacag ctcgggaaca cgccaacgat
     4861 cgcgcgcaaa tcctatgtgc accccgcgct gatcgacctc gccaagtcgc aagcgctttg
     4921 ggatccgagc atgaggctgc cgcgcaccat gcgctatctc gaccgttacg agcgcggact
     4981 gattgcattt ctggatcagc tcgacgaggc tcgaacggag caacgccagg ccgcctgacg
     5041 gagaccgacc gatcgttaca acacaccgac ccgccgatct gcagagcatc ggccagcgcc
     5101 tcgccgaca
//
LOCUS       DASQVK010000129         3221 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_261334,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000129 DASQVK010000000
VERSION     DASQVK010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3221)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3221)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3221
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261334"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..680
                     /locus_tag="VE567_02725"
     CDS             <1..680
                     /locus_tag="VE567_02725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HYZ47788.1"
                     /translation="FRFNGWGGKYHLAGDDDLAVRLAATAAFETRECHYVLEGGAIDV
                     DGTGLAVTTEQCLLNPNRNPGLGKAEIEARLRGDLGLDRILWLGDGLLNDHTDGHVDN
                     LARFVGEGRLAIPEPAGEEDPNAAVYRDAQERARAFGLEIVPLPSPGRVLRDGEIVPA
                     SYMNFYIGNAAIVVPLYGAPSDEAAVAAIQSLFPDRRVVGFRADHILTGGGSFHCISQ
                     QVPAGVC"
     gene            819..1667
                     /gene="aguB"
                     /locus_tag="VE567_02730"
     CDS             819..1667
                     /gene="aguB"
                     /locus_tag="VE567_02730"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0050126 - N-carbamoylputrescine amidase
                     activity [Evidence IEA];
                     GO_process: GO:0009446 - putrescine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidase"
                     /protein_id="HYZ47789.1"
                     /translation="MTEITVAALQLALPGPETENIANVSELVREAAAKGAKVILPPEL
                     FEGPYFCRVEDEGLFANARPTEAHPSVIAMRKLAAELGVFIPTSFFECDGPHHYNSLA
                     MIDDKGAIMGLYRKSHIPDGPGYEEKFYFRPGNTGFKTWKTPQATLGIGVCWDQWYPE
                     TARAMMLMGAEILFYPTAIGSEPHDPELDTSRLWRRAMIGHAVSNVVPVVAANRIGTE
                     DGQRFYGHSFICDERGDLLAEFGAGETGVLTATLDLDRVKRHRAAFGFFRDRRPELYG
                     RLVEDV"
     gene            complement(2186..3160)
                     /locus_tag="VE567_02735"
     CDS             complement(2186..3160)
                     /locus_tag="VE567_02735"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020486626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009331 - glycerol-3-phosphate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0047952 - glycerol-3-phosphate
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0046167 - glycerol-3-phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HYZ47790.1"
                     /translation="MIIGVIGGGAWGTALAQVAAEAGEVLLWAREGEVVAAINTAHEN
                     VSFLPGVPLSPAIRATGALGELAGCEMLLAVTPAQHLRAVLSDMEALTVPIILCAKGI
                     EAGTRLLMSEVAAQAQPRAPLAVLSGPTFAHEVAARLPTAITLACEDEMLSRALAAKL
                     ARPFFRPYLSTDVIGAEIGGAVKNVLAIACGVVEGRGLGQNARAALISRGFAEMTRFG
                     LAKGARVETLAGLSGLGDLVLTCNSTSSRNFSLGKGIGEGRAAADLLADRRSVAEGAF
                     TAPVLQQAAREIGVDMPVVDAVCALLAGKAGVDEVIGALLARPIRAEG"
BASE COUNT          538 a         1136 c         1000 g          547 t
ORIGIN      
        1 cgtttcgctt caatggctgg ggcggcaaat atcatctcgc cggtgacgac gatctcgccg
       61 tccgccttgc cgcgaccgcc gcgttcgaga cgcgcgagtg ccattatgtc ctcgaaggcg
      121 gcgcgatcga cgtggacggc accggccttg ccgtgacgac cgagcaatgt ctcttgaacc
      181 cgaaccgcaa tcccggcctc ggcaaggccg agatcgaggc gcggctgcgc ggcgatcttg
      241 ggctcgaccg catcctgtgg ctcggcgacg gcctcctcaa cgatcacacc gacggccatg
      301 tcgacaatct cgcccgcttc gtgggcgaag gccggctcgc catccccgag cccgccggcg
      361 aggaagatcc gaacgccgcc gtctatcgcg atgcccagga gcgcgcccgc gccttcggtc
      421 tggaaatcgt gcccctcccc tcccccggcc gcgtcctgcg cgacggcgag atcgtcccgg
      481 ccagctacat gaacttctac atcggcaacg ccgcgatcgt ggtgccgctc tatggcgcac
      541 cgagcgacga ggccgcagtc gccgcgatcc agtcgctgtt ccccgaccgc agggtggtgg
      601 gctttcgcgc cgaccatatc ctgaccggcg gcggcagctt ccactgcatc agccagcaag
      661 tgccggccgg agtttgttaa ggcgcgccac aataaatttg tgagtcgctg cgccgcgcac
      721 gggtgaaggt cagctacgtc acggcgtaac cagttttttg cgcatcggga ggctctgccg
      781 gctcgcccgg cggggccttc gtgcgtatat gcccccgcat gaccgagatc actgtcgctg
      841 ctcttcagct cgctttgcct ggccccgaaa ccgaaaatat cgcgaatgtc tccgaactgg
      901 ttcgggaagc cgccgccaaa ggcgccaagg tgatcctgcc gcccgagctg ttcgaaggcc
      961 cctatttctg ccgggtcgag gacgaaggcc tgttcgccaa cgcccgaccc accgaagcgc
     1021 acccctccgt catcgccatg cgcaagctcg cggcagagct cggcgtcttt atcccgacca
     1081 gctttttcga atgcgacggg ccgcatcatt acaacagcct cgccatgatc gacgacaagg
     1141 gcgcgatcat gggcctctat cgcaagagcc acattcccga cggccccggt tacgaagaaa
     1201 aattctattt ccgccccggc aataccggct tcaagacctg gaagaccccc caggcgacgc
     1261 tcggcatcgg cgtgtgctgg gatcaatggt atcccgaaac cgcgcgcgcg atgatgctga
     1321 tgggcgcgga aatccttttc tatccgaccg cgatcggctc ggagccgcac gatcccgagc
     1381 tcgacaccag ccgcctctgg cgccgcgcga tgatcggcca tgcggtctcg aacgtcgtgc
     1441 cggtggttgc cgcgaaccgc atcggcaccg aggacggcca gcgcttctac ggccacagct
     1501 tcatctgcga cgagcgcggc gacctgcttg cggagttcgg cgccggggaa accggcgtcc
     1561 tcaccgccac cctcgacctg gaccgcgtca agcgccaccg cgccgccttc ggcttcttcc
     1621 gtgatcgccg gccggagctc tatggccggc tggtggagga tgtttgaccg gctttcacgc
     1681 ctcttctgaa ggtactgaac taggccgtga actcatacat cgggaacgtc cgccaagggt
     1741 ggcttgcggt cattactctc ccggctccca cgcgatttcc gtgatgtggt cacccgacac
     1801 ggtaaggtcc accgagtgac cttggatgtg gtcgcacttc cactcgaccc ccaccaccgg
     1861 atagtctgcg ctgtgtggtc ccgtcactct gctgaccgaa catccgctcg gagcgaggat
     1921 ttcacgaact gcggcgggga atccatgctg cgacagctta gctccacgcg tcagacgatc
     1981 cagagatcgc atatctccga cctctgccat cttgaccgcc tgaagagcta ctgcctgcgc
     2041 cttgttttga ggcttcaccc cacaggacgc gacaactaca gcacctaagg cgcacaagaa
     2101 cgtgcctgat acttttttca cagggttgtt ctgcggcaga gtgccaatgt ccgcaatgcg
     2161 tcgagagatg acttaccagt acaagttaac cctctgccct gatcggccgc gcaagcagcg
     2221 ctccgatcac ctcgtccaca cccgcttttc cggcgagcag tgcgcacacc gcgtccacga
     2281 ctggcatgtc gacgccgatc tcgcgtgcgg cctgttggag cacgggcgcc gtgaacgcgc
     2341 cttccgcgac cgagcggcga tcggctagga ggtcggcggc ggcgcggcct tcgccgatgc
     2401 ctttgccgag cgagaaattg cgcgagctgg tcgagttgca ggtcaggacg aggtcgccca
     2461 ggcccgatag cccggccagc gtctccaccc gcgcgccttt cgccaggccg aagcgcgtca
     2521 tctcggcaaa gccccggctg atgagcgccg cgcgggcgtt ctggccgagg ccgcgccctt
     2581 cgaccacgcc gcaggcgatg gcgaggacgt tcttcaccgc gccgccgatc tccgccccaa
     2641 tcacatcggt cgagagatag ggacggaaga aaggccgggc gagcttggcg gcgagcgcgc
     2701 ggctcagcat ttcgtcctcg caggcaaggg tgatggcggt cggcagccgc gccgcgactt
     2761 cgtgcgcgaa agtcgggccc gacagcaccg caagcggggc gcgcggctgc gcttgcgctg
     2821 ccacttcgga catcagcagc cgcgttcccg cttcgatccc tttcgcgcag aggatgatcg
     2881 gaaccgtcag cgcttccatg tcggacagca ccgcgcgcag gtgctgggcg ggggtgacgg
     2941 ccagcagcat ctcgcatccg gccaactcgc cgagtgcgcc ggtcgcgcga atcgcgggcg
     3001 acagcgggac gccgggcagg aacgagacgt tttcgtgcgc cgtgttgatc gcggcgacga
     3061 cttcgccctc gcgtgcccag agcagcacct cgccggcttc cgcggcgacc tgggccagcg
     3121 ccgtgcccca ggcgccgccg ccgatcacgc cgatgatcaa gccttcaccc ccgccccgcg
     3181 cgccggcgcg gcattggggt cgagcggcca gcgcgcccgg g
//
LOCUS       DASQVK010000130         2977 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_418547,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000130 DASQVK010000000
VERSION     DASQVK010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2977)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2977
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_418547"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..480
                     /locus_tag="VE567_02740"
     CDS             <1..480
                     /locus_tag="VE567_02740"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010219080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043772 - acyl-phosphate
                     glycerol-3-phosphate acyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate acyltransferase"
                     /protein_id="HYZ47791.1"
                     /translation="SGNIGATNVLRTGRKGLAAATLLLDAFKGAAAVWIGEAIVPGGA
                     VLGAAGAFFGHCYPIWLGFRGGKGVATFGGIAFGVWWALGLIYLAVWIGVLALTRYSS
                     VGGLAAAVAAPVSAFLLGRTDIGILFVALALLVIWKHRANIGRLMSGEEPRIGRGSG"
     gene            473..1567
                     /gene="dprA"
                     /locus_tag="VE567_02745"
     CDS             473..1567
                     /gene="dprA"
                     /locus_tag="VE567_02745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HYZ47792.1"
                     /translation="MADVEPDLHDARLRLLRTPHIGPVTYRQLIARFGSAEAALQALP
                     MLAARGGRRDFRPASGELVRRELAAIERLGARVLFVDDAAYPALLRASETAPPMLILR
                     GALGLFERPMIAIVGARNASAAACRFARGLAQELASEGVAVVSGLARGIDTAAHAGAL
                     QGGTIAVIASGIDIAYPPENAELQERIATGGLLIAEQPPGTEPLARHFPSRNRIIAGL
                     SLGTVVVEAAPKSGSLITARIAAELGREVMAVPGSPLDQRAQGCNLLIREGATLVQNA
                     ADILEQIRPIDARGVAQPVSGWEAGPVDDASDAERRAVIGLLGPTPVAVDEVIRLSGL
                     PSAIVQMALLELELAGRLERHAGGRVSLAV"
     gene            complement(1606..2487)
                     /locus_tag="VE567_02750"
     CDS             complement(1606..2487)
                     /locus_tag="VE567_02750"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010408703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HYZ47793.1"
                     /translation="MLTTLLLLQAAAHSPAITPKSPGEIVAQAPAADWVDIAPDDLLV
                     MRLAPDRDGKARRVVIQLMPPPFSQPWIANIHTLARAHWWDGTSINRVQDNYVVQWGD
                     ATEKKPLPAGMKATSQNDYTSRAGVFPTSGPRRDPYADARPYKGWPIASDGQVGWPVH
                     CYGMIGVGRDMPPSAGNGTELYTVIGHAPRHLDRNIALIGRVVEGIENLSSLPRGTGN
                     LGFYEKPEQRVPIVSIRMASELPEAERPHLQYLSTESPSFAAYADARANRRDAFFIVP
                     AGGADICNVPVPIRKKP"
     gene            2549..2639
                     /locus_tag="VE567_02755"
     tRNA            2549..2639
                     /locus_tag="VE567_02755"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2583..2585,aa:Ser,seq:gga)
     gene            complement(2651..>2977)
                     /locus_tag="VE567_02760"
     CDS             complement(2651..>2977)
                     /locus_tag="VE567_02760"
                     /EC_number="3.4.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004210344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070573 - metallodipeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane dipeptidase"
                     /protein_id="HYZ47794.1"
                     /translation="PRPKATIAQVADHIEHVRQVAGVDHVGIGSDFDGITETVVGLED
                     VSKYPSLFAELARRGWSDADLAKLAGDNLLRVMEQAERTAAAMRSEPPLIQTIEQLDG
                     APQPAR"
BASE COUNT          433 a          987 c         1041 g          516 t
ORIGIN      
        1 tcgggcaata tcggcgcgac gaacgtgctt cggaccgggc gcaaggggct ggcggccgcg
       61 accttgctgc tcgatgcatt caagggcgca gccgcggttt ggatcggcga agcgatcgtg
      121 cccggcggcg cggtgctcgg cgcggcaggc gcgtttttcg gccattgcta cccgatctgg
      181 ctgggcttca gaggcgggaa gggcgtggcg accttcggcg gcatcgcgtt tggcgtctgg
      241 tgggcgctgg ggctgatcta cctcgccgtc tggatcggcg tactggcatt gacgcgctat
      301 tcctcggtcg gcggcctcgc tgcggcggtg gcggcgccgg tcagtgcgtt cctgctcggg
      361 cgcactgaca ttggcatcct gttcgtcgcg ctcgccttgc tcgtcatctg gaagcaccgt
      421 gcgaatatcg gccgtctaat gtccggcgag gaacccagga tcgggcgggg cagtggctga
      481 cgtcgagccg gatcttcatg atgctcggct gcggctgctg cgcacacccc atattggccc
      541 ggtcacctat cgccagctga ttgcgcgctt cggaagcgcc gaggcggcgc tccaggcgct
      601 gccgatgctc gccgcgcgcg gcggccggcg cgatttccgg cccgccagcg gggagctcgt
      661 caggcgcgag ctcgcagcaa tcgagcgcct gggcgcgcgc gtgctgtttg tcgacgatgc
      721 cgcctatccg gcgctgctgc gcgccagcga aactgcgccg ccgatgctga tcctgcgcgg
      781 tgcgctcggc ctgttcgaac ggccgatgat cgcgatcgtc ggcgcccgca atgcctcggc
      841 cgccgcctgc cgtttcgcac gcgggctggc gcaggagctg gcgagcgaag gcgttgccgt
      901 cgtttcgggg ctcgcacgcg gcatcgacac cgccgcgcat gccggcgcgc ttcagggcgg
      961 cacgatcgcg gtcatcgcga gcggcatcga catcgcctat ccgcccgaaa atgccgagct
     1021 gcaggagcgg atcgcaaccg gcgggctgct gattgccgag cagccgcccg gcaccgaacc
     1081 gctcgcccgc catttccctt cgcgcaaccg gatcatcgcc gggctgtcgc tcggcacggt
     1141 ggtggtcgag gcggccccta aatcgggctc gctgatcacc gcgcgcatcg ccgcggagct
     1201 gggccgcgaa gtgatggccg tgcccggctc gccgctcgac cagcgggcgc agggctgcaa
     1261 cctgctgatc cgcgaaggcg cgacactcgt gcagaacgcg gctgatattc tggagcagat
     1321 tcgcccaatc gacgcccgtg gggtcgccca gccggtcagc ggctgggaag cgggcccggt
     1381 cgacgacgcg tccgatgctg aacggcgtgc ggtaatcggc ttgctcgggc ccactcccgt
     1441 cgcagtcgat gaagtgatcc gcctttcagg cctgccaagc gcgattgtgc agatggcgct
     1501 gttggagctt gaactcgccg gccggctcga gcgccatgcc ggcggccgcg tcagtcttgc
     1561 cgtctgacgg ggggatcgcc gctgtcacgc cggtgaagga gaaattcagg gcttcttccg
     1621 gatcggcacc ggcacgttgc agatgtccgc gccgcccgcg ggcacgatga aaaacgcgtc
     1681 gcgccggttc gcccgcgcat cggcataggc ggcgaagctt ggcgattcag tcgacagata
     1741 ttggaggtgc ggtcgctccg cttcaggcag ctcgctagcc atccggatcg agacgatcgg
     1801 cacccgctgc tccggctttt catagaagcc cagattgccc gtcccgcgcg gcaggctgga
     1861 gagattttcg attccctcca ccacgcgccc gatcagcgcg atattgcggt cgaggtgccg
     1921 cggcgcatgg ccgattacgg tgtagagctc ggtgccgttg cctgcactgg gcggcatgtc
     1981 gcggccgacg ccgatcatgc cgtaacaatg aacgggccag cctacctgcc cgtcggatgc
     2041 gatgggccaa cccttatagg gcctggcgtc cgcataggga tcgcgacgcg gcccactggt
     2101 cggaaacacg cccgcgcggc tcgtatagtc gttttgcgac gtggccttca tccccgccgg
     2161 caagggcttt ttctccgtcg catcgcccca ctgcacgaca taattgtcct gtacgcggtt
     2221 gatgctggtg ccgtcccacc aatgcgccct ggcgagggta tggatgttcg cgatccaggg
     2281 ctgggagaag ggcgggggca tcagctggat caccacccgc cgggccttcc catcgcggtc
     2341 gggcgcgagc cgcatcacca gcaggtcatc cggtgcaata tcgacccaat cggcggcggg
     2401 cgcctgggcg acgatctcgc cgggcgattt gggcgtaatg gcgggagaat gagcggcggc
     2461 ttgcagcagc aggagcgtcg tcagcatgag gcaaagcatt gcacgcgccg gaaccagacg
     2521 atagggggct tcgcttctac aggcatgcgg agcggtggcc gagtggtcga aggcgctcgc
     2581 ctggaaagtg agtatacggc aaaaccgtat cgagggttcg aatccctccc gctccgccac
     2641 aacctctagc tcagcgcgcc ggctgcggcg ctccgtccag ctgctcgatc gtctggatga
     2701 gcggcggctc gcttcgcatc gccgccgcgg tgcgttcggc ttgctccatc acgcgcaaca
     2761 aattgtcgcc ggcaagcttg gcgaggtcgg cgtcgctcca gccgcgccgg gcgagctcgg
     2821 cgaagagcga cggatacttc gacacgtcct cgaggccgac cactgtctcc gtgatgccgt
     2881 cgaagtcact gccgatcccg acgtggtcga cgccggcgac ctggcgcacg tgctcgatgt
     2941 ggtcggcgac ctgggcgatc gtcgccttcg ggcgcgg
//
LOCUS       DASQVK010000131         2731 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_324656,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000131 DASQVK010000000
VERSION     DASQVK010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2731
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324656"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..341
                     /locus_tag="VE567_02765"
     CDS             <1..341
                     /locus_tag="VE567_02765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008071705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_function: GO:0009678 - diphosphate hydrolysis-driven
                     proton transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sodium/proton-translocating pyrophosphatase"
                     /protein_id="HYZ47795.1"
                     /translation="TPILVYFVITFVAGQANGFASLGALLLGVIVSGLFVAISMTSGG
                     GAWDNAKKFIEDGNHGGKGSDAHKAAVTGDTVGDPYKDTAGPAVNPMIKITNIVALLL
                     LAALAGHVAG"
     gene            complement(418..717)
                     /locus_tag="VE567_02770"
     CDS             complement(418..717)
                     /locus_tag="VE567_02770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47796.1"
                     /translation="MDGRVEPRATDGDLEGLDDSQRAEVHAYEGGGPTDGEVLTDMTR
                     DRGEDFVEDDRPAEIMPEEVDALGMTILTPEELGDEVLDGDIEKELGEADLSGDY"
     gene            complement(783..2003)
                     /locus_tag="VE567_02775"
     CDS             complement(783..2003)
                     /locus_tag="VE567_02775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HYZ47797.1"
                     /translation="MHAPAPSHPFQLRLAEFVAMIAGLMAMAALSTDSMLPALPAIGA
                     SLHVGNPNDRQAVISTFMLGFGMAQIVYGPLSDRFGRRPTIMVSLVLAVALNLVAAFA
                     ASFTLLLAARFACGLALAACRVLSISIVRDRFAGDHMARVMSLVSIVFMIVPIIAPNL
                     GQAIIAIAHWRWIFGVMALAALMLFIWVAIRLPETLNPAHRLPLSLARMGEGFRYVLT
                     DRQALGYASAATLLQGGMFGFILSVEQVFENAFHAPRLLGPMFSVIASAMIAASFLNS
                     RIVTQFGARAVSHRAVLGYTGFALLHLAVAAAGLETLAGFAVLQALTLACFGLAGANC
                     NAIAMEHMGRIAGTASSVQGMMQTVGGVAIGASIGAAFNGTTVPLYAGFALCGLLAFG
                     AIAFAEQGRLFGRA"
     gene            2110..>2731
                     /locus_tag="VE567_02780"
     CDS             2110..>2731
                     /locus_tag="VE567_02780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate and iron-dependent oxygenase
                     domain-containing protein"
                     /protein_id="HYZ47798.1"
                     /translation="MFDAPPPLLTTLSLARHDRDPEDFAQAFGASFHRFGFAIVEDHG
                     IDPDLIDRGWALTKAFFDLPAAVKDKYHLPGKAGARGYTPFGIETAKGATENDLKEFW
                     HVGRELPAGHRFADVMPPNVWPEELPSFKETFLALYAEFDRIGAKLLSAIARYLSLAP
                     NWFVEPVTDGNSVMRLLHYPPVSPEAPGVRAGAHEDINLITLLLGAE"
BASE COUNT          504 a          916 c          874 g          437 t
ORIGIN      
        1 tcacgccgat tctcgtttat ttcgtcatca cgttcgttgc cgggcaggcg aatggcttcg
       61 catcgctggg cgcgctgctg ctgggagtga tcgtgtccgg gcttttcgtc gccatctcga
      121 tgacctcggg cgggggcgcc tgggacaatg cgaagaagtt tatcgaggac ggcaatcacg
      181 gcggcaaagg gtctgacgcg cataaggccg cggtgaccgg cgacacggtc ggcgatccgt
      241 acaaggacac ggccggcccg gccgtgaatc cgatgatcaa gatcaccaac atcgtggcac
      301 tgctgctgct cgccgcgctg gcgggtcacg tcgcgggctg accgacgcct cgctcatgca
      361 aaaggaaagc ccgcccggag cgatccgggc gggcttttcc attgcgctcg cgcgctgtca
      421 gtaatcgccg ctgaggtcgg cctcgcccag ctctttctcg atatcgccgt ccagcacctc
      481 gtcgccgagc tcctcgggcg tcaggatcgt catgccgagc gcatcgactt cctctggcat
      541 gatctcggcg gggcggtcgt cctcgacgaa gtcctccccg cgatcgcgag tcatgtcggt
      601 cagcacttcg ccgtcggtgg gcccgccgcc ttcataggca tgaacctcgg cgcgctggga
      661 atcgtccagc ccttcaaggt ctccgtcggt cgctctcggc tctacccgcc cgtccatggc
      721 atttcctccg tcacgtcagc gtgcgaaacg aaccggccgg aattgcggtt ccggctcggg
      781 cgctaggccc ggccgaacag ccggccctgt tcggcgaagg caatggcgcc aaacgccaag
      841 aggccgcaca gcgcaaagcc ggcgtagagc gggacagtgg tgccattgaa ggccgcgccg
      901 atgctggcgc cgatcgcgac gccacccacc gtctgcatca tgccctgcac gctggaggca
      961 gtgccggcga tccggcccat atgctccatc gcgatcgcgt tgcaattcgc ccccgccagg
     1021 ccgaaacagg ccagcgtcag cgcctggagc acggcgaagc cggccaaagt ctccaggccc
     1081 gccgcggcga ccgcgaggtg cagcagcgca aagccggtat agccgagcac tgcccgatgt
     1141 gagacggcgc gcgcgccgaa ctgcgtgacg atccgcgagt tgaggaagga agcggcgatc
     1201 atggcgctcg cgatcaccga aaacatcggc ccgagcagcc gcggcgcatg gaaggcgttc
     1261 tcgaacactt gctcgaccga caggataaag ccgaacatgc cgccctgtag aagcgtcgcc
     1321 gcactcgcat agccgagcgc ctgccggtcg gtcagcacgt atcgaaagcc ctcgcccatc
     1381 cgtgcgaggc tgaggggcag gcggtgtgcg ggattcagcg tttcgggcag ccggatcgct
     1441 acccaaatga acaacatcag cgcggcaagc gccatcacgc cgaaaatcca gcgccaatgg
     1501 gcgatcgcga taatggcctg gccaaggttc ggcgcgatga tcggcacgat catgaacacg
     1561 atgctgacca ggctcatcac gcgcgccata tgatcgcccg caaagcgatc ccgcacgatc
     1621 gagatcgaca gcacccggca ggcggcgagc gccaggccac aggcgaagcg ggcggcaagc
     1681 agcaaagtga agctggcggc aaaggccgcg accaggttca gcgccaccgc aagcaccagg
     1741 ctgaccataa tggtcgggcg gcggccgaac cggtccgaaa gcggcccgta aacgatctgt
     1801 gccatgccga agccaagcat gaaggtcgag atcacggcct gccggtcgtt gggattgccc
     1861 acgtgcaggc tggcgccgat cgcgggcagc gccggcagca tcgagtctgt ggacagcgcc
     1921 gccatcgcca tcagtccggc gatcatcgcc acgaattcgg cgaggcgaag ctgaaacggg
     1981 tgcgagggag cgggcgcatg catgaagggc cacatggcct ttgctgcatt gcaacgaaag
     2041 aggggctggc tcgatttttt ggccgaccgc atacttgggg ccgcggcgcg cctgcactag
     2101 agatgcggta tgtttgatgc tcctcccccc cttctgacca cgctttcgct ggcccggcac
     2161 gaccgcgacc cagaggattt cgcccaagcc ttcggcgcat cgtttcatcg cttcggcttc
     2221 gccatcgttg aagatcatgg catcgaccct gacctgatcg accgcggctg ggccctcacc
     2281 aaagcctttt tcgacctgcc tgccgccgtg aaggataagt accacctccc cggcaaggcc
     2341 ggcgcgcgcg gctatacgcc attcggcatc gaaaccgcga aaggcgcgac ggagaacgat
     2401 ctcaaggagt tctggcatgt gggccgcgag ctgccggccg gccaccgctt cgccgacgtg
     2461 atgccgccca acgtctggcc ggaagaactg cccagcttca aggagacgtt cctcgcccta
     2521 tacgctgagt tcgaccggat cggcgcgaag ttgctctccg ccatcgcccg ctatctgagc
     2581 ctggcgccga actggttcgt cgagccggtg accgacggca acagcgtcat gcgcctgctc
     2641 cattatccgc cggtgtcgcc agaagcgccg ggcgttcgcg caggggcgca tgaggacatc
     2701 aacctcatca cgctgctgct cggcgccgag g
//
LOCUS       DASQVK010000132         2471 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_166406,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000132 DASQVK010000000
VERSION     DASQVK010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2471)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2471)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2471
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166406"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(243..2195)
                     /locus_tag="VE567_02785"
     CDS             complement(243..2195)
                     /locus_tag="VE567_02785"
                     /inference="COORDINATES: protein motif:HMM:NF011068.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0032324 - molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin biosynthesis protein"
                     /protein_id="HYZ47799.1"
                     /translation="MTQKPLPENRDSAGQQQFLTILSREDALARFEAALFPRVVPNEA
                     RPLSEALGCALAEDVVAPIDVPPFDRSNVDGFAVRSADVAAAGEAAPVRLALNEEIIA
                     CGTAPARPVLSETATSIATGGPVPRGADAIVMVEHTQPSGHRAIEIRRAASPGQFISY
                     AGSDIARGETLLRAGTIIGSREIGMLAACGIAEISVARRPRVAILSTGDELVQPGAPL
                     RPAAIYDTNGAIVTAAISENGGEATFLGAVVDDEAQLEAAMRKALANSDMLVLSGGTS
                     KSAGDVSHRIIARLGKPGIIAHGVALKPGKPLCLAVCDGKPVVILPGFPTSAMFTFHD
                     MIVPVLRRMAGLPPRSDAKVGARVPVRIASELGRTEFVMVSLVEGADGLIAYPTGKGS
                     GAITSFAQADGFLKIDALADQMPAGRQAEVTLLTPHVRVPDLVIVGSHCTGLDLVTAP
                     LARAGLVVRSIAVGSLGGLAAARRGECDFAPIHLFDENTETYNTPYLAEGLELVPGWQ
                     RMQGMVFRKGDGRFEGFNAQDAVCAALSDAACIMVNRNQGAGTRVLLDRLLAGARPDG
                     YWNQPRSHNAVAAAVAQHRADWGMTIAPVAQASGLGFIPLAEEHYDFALVTARKSRPA
                     VQAFLAALNSEESRAALEQAGFRRAF"
     gene            complement(2204..>2471)
                     /locus_tag="VE567_02790"
     CDS             complement(2204..>2471)
                     /locus_tag="VE567_02790"
                     /inference="COORDINATES: protein motif:HMM:NF015419.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47800.1"
                     /translation="VLARPVLERLSSLRQRDTLSLPLARKIACSVGVAEVALLERAEG
                     VWMPLAVGDLSLQAIARADGWLMVPGASEGFAAGTPVDVYMLRE"
BASE COUNT          439 a          853 c          813 g          366 t
ORIGIN      
        1 ggacacaaga tcacgaagta agccgtaacc catcgcgtag ggaaagccgg attgcctccg
       61 ctggacctgt atgctcgtgt gcgcattctt tcgcacagat tgcacacgag accgcgggtg
      121 cagcgcgcac ccggctttcc ccgcgccctc cgtatcgaac gagggcgaac gctacgcaaa
      181 actcgggcgc ctcgtgccgc gtgaatgcga acgcatatcc tgatcgctgt ttgacaattg
      241 aatcagaaag cccgccgaaa gcccgcctgc tccagcgccg cgcggctctc ctccgagttc
      301 agcgcagcca gaaaggcctg caccgccgga cgagacttgc gcgcggtcac cagcgcgaaa
      361 tcataatgct cctcggcaag cggaatgaaa ccgaggcccg atgcctgcgc gaccggcgca
      421 atcgtcatgc cccagtcggc gcgatgctgt gccacggccg cggccaccgc gttgtgcgag
      481 cgcggctgat tccagtagcc gtcgggccgc gcgccggcga gcaggcgatc aagcaggacg
      541 cgggtgcccg ccccctgatt gcggttgacc atgatgcagg cggcgtcact aagcgcggca
      601 caaacggcgt cctgtgcgtt gaagccttcg aagcgtccgt cacccttgcg gaacaccatg
      661 ccctgcatcc gctgccagcc cggcaccagt tcgagcccct cggcgaggta gggcgtgttg
      721 taggtttcgg tgttctcgtc gaacagatgg atcggcgcga aatcgcattc gccacgcctg
      781 gcggccgcga ggccgccgag gctgccgacc gcgatcgaac gcacgactag cccggcacgc
      841 gcgagcggcg cggtgacgag gtcgagcccg gtgcagtggc tgccgacaat gacgagatcg
      901 ggcacgcgca catgcggcgt gagcagcgtt acctcggctt gcctgccggc cggcatctgg
      961 tcggcaagcg cgtcgatctt caggaaaccg tcggcctggg caaaggaggt gatggcgccc
     1021 gaaccctttc cagtcggata ggcgatcagt ccgtccgcgc cctcgaccag cgacaccatg
     1081 acgaattcgg tgcggccgag ttcggacgcg atccgcaccg gcacccgcgc gccgaccttc
     1141 gcgtctgaac gcggcggcag gcccgccatg cgccgcagca ccggcacgat catgtcgtgg
     1201 aacgtgaaca tcgccgaggt cgggaatccc ggcaggatca ccaccggctt gccgtcgcag
     1261 acagcgaggc acagcggctt gcccggcttc agcgcgacgc catgcgcgat gatgccgggc
     1321 tttccgagcc gcgcgatgat gcggtgggag acgtcgccgg cactcttgga ggtgccgccc
     1381 gagagcacca gcatgtcgct attcgcaagc gccttgcgca tcgcggcttc gagctgcgcc
     1441 tcatcgtcga cgacggcacc aagaaaggtc gcctcgccgc cgttctcgct gatcgccgcc
     1501 gtgacgatcg cgccattggt gtcgtagatc gcggccgggc gcagcggcgc tcccggctgc
     1561 accagttcgt cgccggtgga gagaatggcg acgcgcggcc ggcgcgcgac agaaatttcg
     1621 gcaatgccgc aggccgcgag catgccgatc tcgcgcgagc cgatgatggt gccggcgcgc
     1681 agcagggttt cgccgcgcgc gatgtcggag ccggcataag agatgaattg cccgggcgaa
     1741 gcggcacggc gaatctcgat cgcgcgatgg cccgatggct gcgtgtgctc gaccatcacg
     1801 atcgcatcgg ccccgcgcgg caccggcccg ccggtcgcga tcgacgtcgc ggtctcggac
     1861 aacaccggcc tcgccggcgc ggtgccgcag gcaatgatct cctcgttcaa cgccagacgc
     1921 accggcgcgg cttcgccggc ggcggcgaca tcggcggagc gcaccgcaaa accgtcgaca
     1981 ttggagcggt cgaacggcgg cacgtcgatc ggcgccacca cgtcctcggc gagagcgcag
     2041 ccaagcgctt ccgagagcgg tcgcgcctcg ttcggcacca cgcgcgggaa cagcgccgcc
     2101 tcgaaccgtg ccagtgcatc ctcgcgcgac aggatggtca gaaactgttg ctgaccggcg
     2161 ctgtcgcggt tttcaggcag gggcttttgg gtcatttcgg aactcattcc cgcagcatat
     2221 agacatcgac cggtgtgcct gcagcaaacc cctcggaggc gcccggcacc atcagccagc
     2281 catcggcgcg ggcgatcgct tgaagcgaca agtcgccgac tgcaagcggc atccaaacgc
     2341 cctcagcacg ttccaatagc gcaacctcgg cgaccccgac cgagcaggcg atcttgcgcg
     2401 ccagaggcaa tgaaagcgtg tcgcgctgcc tgaggcttga taatcgctcc agcacaggcc
     2461 gcgccagcac c
//
LOCUS       DASQVK010000133         3504 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_39998, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000133 DASQVK010000000
VERSION     DASQVK010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3504
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39998"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(51..221)
                     /locus_tag="VE567_02795"
     CDS             complement(51..221)
                     /locus_tag="VE567_02795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47801.1"
                     /translation="MSHILPAPRGGANPRWRGAITTALMLLLAVMIVRDIFARRWGST
                     SPPSSNVTRRMP"
     gene            complement(231..830)
                     /locus_tag="VE567_02800"
     CDS             complement(231..830)
                     /locus_tag="VE567_02800"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024917.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HYZ47802.1"
                     /translation="MTALRQTRIALTPKAAPFAIRAERASDVVAREALLDACFGENRH
                     MRTCQRLRDGRAPAEGLAFSATAEGRLVGTLRLWHVSAGGSPALMLGPLAVDSRSRKL
                     GVGAALMDHALAAAKARGHRAVILLGDAPYYARFGFSARKTGELSLPGPFERDRLLAL
                     EFNEGALDGAWGMIAATGAPAPKARTVRAKKAQRAVLAA"
     gene            complement(1056..2198)
                     /locus_tag="VE567_02805"
     CDS             complement(1056..2198)
                     /locus_tag="VE567_02805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010970259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III PLP-dependent enzyme"
                     /protein_id="HYZ47803.1"
                     /translation="MTERIQEFLRNRREEGNDTEPCLVVDLEVVRDNFQTFAKALPDS
                     RVFYAVKANPAPEVLALLASLGSCFDTATVAEIEMALAAGATPDRISFGNTIKKERDI
                     ARAYALGIRLFAVDCAAEVEKVSRAAPGARVFCRILYDCAGAEWPLSRKFGCDPEMAV
                     EVLDLAKRLGLEPCGISFHVGSQQRKVKAWDRALAMASTVFRDCAERGINLTMVNMGG
                     GFPTKYLKDVPPVVQYGRSIFRALRKHFGNQIPETIIEPGRGMVGNAGIIETEVVLIS
                     RKSDEDDVRWVYLDIGKFGGLAETMDESIRYAIRTPHDGAEMTPCVIAGPTCDSADVL
                     YEKMPYPLPVTLEIGDKLLIEGTGAYTSTYSSVAFNGIPPLKTYHI"
     gene            complement(2865..3125)
                     /locus_tag="VE567_02810"
     CDS             complement(2865..3125)
                     /locus_tag="VE567_02810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47804.1"
                     /translation="MSPQPSSSTARRISWPSVITVISAAILIGAEVFGAAFAGGWALA
                     ILIGLDDTGAHIVQAVLFALGVLIMAAFIRTAQRIEPFTRRT"
     gene            3124..>3504
                     /locus_tag="VE567_02815"
     CDS             3124..>3504
                     /locus_tag="VE567_02815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47805.1"
                     /translation="MEYVLFEGRNLPEMGRSSKRKRPKNAASRGIDSRSISPPATEFR
                     MSPTASDSAASQAQANPLLKPWQTRFETPPFDEIQPEHFLPAFEQAFADHSAEVAAIT
                     HDPSTPDFDNTVTALERSGKLLTKV"
BASE COUNT          614 a         1148 c         1159 g          583 t
ORIGIN      
        1 ccttcggcgc gggttaaagg gcttttcgcc gcgccaagca accctgcgga tcaaggcatg
       61 cggcgcgtta cgttggagga aggcggcgat gttgagcccc agcggcgcgc gaagatgtcc
      121 cgcacgatca tgaccgcgag cagcagcatc agcgccgtgg tgatggcgcc gcgccatcgc
      181 ggattggcgc caccgcgcgg tgcggggagg atgtgcgaca tggccgcggc tcacgccgcc
      241 agcacggcgc gctgcgcctt tttcgcgcgc acagtccgtg ccttcggcgc aggcgccccg
      301 gtggccgcaa tcatgcccca ggcgccgtcg agcgcaccct cgttgaattc gagcgcgagc
      361 agccggtcgc gctcgaacgg gccgggcagc gacagctcgc cggtcttccg ggcagagaag
      421 ccgaagcggg cgtaataggg cgcatcgccc agcaggatca ccgcgcgatg accacgcgcc
      481 ttcgccgccg cgagcgcgtg gtccatcagc gcggccccga ctcccagctt gcgagaacgg
      541 ctatctaccg cgagcgggcc gagcatgagc gccggcgagc ccccggcgct gacgtgccac
      601 aaccgcagcg tcccgaccag gcggccctcg gccgtcgccg agaaggcaag gccttcggcg
      661 ggcgcgcgtc cgtcgcgcag gcgctggcag gtgcgcatat ggcggttctc gccaaagcag
      721 gcatcgagca gcgcctcgcg ggcgacgacg tccgaagctc gttccgcacg gatcgcgaac
      781 ggagcagctt tcggggtgag ggcgatcctg gtctgtcgca aggcagtcat ggcacgtcag
      841 tccctgcggc caacggcgcc taagcgcgcc gcgggcagcg ttgtcaaatc aggcgatgtc
      901 aggggaggga gccggcggac cggctcccgg ctttctctcc tctcccgcac ttgcggggga
      961 gggcaggggt ggggatgttt ccgcctgcgc ggaaaccaac ctccacccgg cgcttcgcgc
     1021 cgacctcccc gcaagcggga gaggtgagaa cgggatcaga tgtggtaggt cttcagcggc
     1081 gggatgccgt tgaacgccac cgacgagtag gtggacgtat aggccccggt gccttcgatc
     1141 agcagcttgt cgccgatctc gagcgtcacc ggaagcggat acggcatctt ctcgtacagc
     1201 acgtcggccg agtcgcaggt ggggcccgcg atcacgcacg gcgtcatctc cgccccgtca
     1261 tgcggggtgc ggatcgcgta gcggatcgac tcgtccatcg tctcggcaag gccgccgaac
     1321 ttgccgatgt ccaggtacac ccagcgcaca tcgtcctcgt cgctcttcct ggagatcagg
     1381 acgacttcgg tctcgatgat gccggcattg ccgaccatgc cgcgtcccgg ctcgatgatg
     1441 gtctccggga tctggttgcc gaaatgcttg cgcagcgcac ggaagatcga ccggccatac
     1501 tgcacgaccg gaggaacgtc cttgagatac ttggtcggga agccgccgcc catgttgacc
     1561 atggtcaggt tgatcccgcg ctcggcgcag tcacggaaca cggtcgaggc catcgccagc
     1621 gcccggtccc acgccttcac cttgcgctgc tgcgagccga catggaagga gatgccgcag
     1681 ggctcgaggc ccagccgctt ggcgaggtcg agcacctcga ccgccatctc cggatcgcag
     1741 ccgaacttgc gcgacagcgg ccactcggcg ccggcgcagt cgtagaggat gcggcagaag
     1801 acgcgcgcgc cgggagcggc acgggaaacc ttctcgacct cagcggcgca atccaccgcg
     1861 aacaggcgga tgccgagcgc gtaggcgcgc gcgatgtcgc gctccttctt gatcgtgtta
     1921 ccgaaggaga tgcggtccgg cgttgctccc gcggccagcg ccatttcgat ctccgccacc
     1981 gtggcggtgt cgaagcagga gccgagggaa gccagcagcg ccagcacttc cggcgcaggg
     2041 ttggccttca ccgcgtagaa tacgcgtgag tcaggcagcg ccttggcaaa ggtctggaaa
     2101 ttgtcgcgca ctacttcgag gtcgaccacg aggcacggct cggtgtcgtt gccttcctcg
     2161 cggcggttgc gcaggaattc ctggattcgt tcagtcatgg cactctccca aggccctagc
     2221 gacagggccg gtagcaagtg atttcggtcg tgagtgcttt ggcgctgccg cgcgatggag
     2281 gcgcgacaag gccttgaact cgaaaccgac ttttgctgcc gtggattggg ttgggagtgt
     2341 ctcccggccc gctcacctgg caatgaagga caagcctttt cagtagcccg cgccggcgtt
     2401 ggactgccgg tagagaccaa aaaagcccga tccgtcgttg ctttaagtcg cgtcccccgt
     2461 tgagagcggg gtgcgccggt tcgcctccgg ctgccagtca cggttgcaag agttggagag
     2521 accttcagcg gcatccctgg agagagatgc tggcctcctg aactttcgat ccaggcgacc
     2581 ctcggttctt ccatcccttg gcggctgtcc ggcctcttgt ccggatacct accgactgac
     2641 acacgaccac aggcacgtgc gaaattgggc aagaccggaa ataagtcttt tgactctgct
     2701 tcgcaagaat ttttttgcga tggcgccaaa tttccctaac gcgaccttga cgtgtggcgc
     2761 gcggcacaga gaatcgacgc tgaatctgaa cagacgttaa gcttgattaa gcgggcgtca
     2821 gcaaagttgc acctgcgccg cagcgctttc tcacaccgcg cgcgtcaggt gcggcgcgtg
     2881 aacggctcga tgcgctgcgc ggtgcggatg aacgccgcca tgatcaggac gccgagcgcg
     2941 aacagcaccg cctgcacgat gtgcgcgccg gtgtcgtcca gtccgatcag gatcgcgagc
     3001 gcccagccgc cggcgaaggc cgcgccgaac acctcggcgc cgatcaggat cgcggcgctg
     3061 atgacggtga tgacgctcgg ccaggagatc cggcgcgcgg tggaggaaga gggctgtggg
     3121 ctcatggaat acgtcctgtt tgaggggcgc aatctccctg aaatggggcg ttctagcaag
     3181 cgtaaaaggc ccaaaaatgc cgcatcgcgt ggtatagatt cccgttcgat ttcgccacca
     3241 gcaacggaat ttcgcatgtc gccaaccgca tcagactcgg ccgcctccca ggcgcaggca
     3301 aacccgctgc tcaagccgtg gcagacgcga ttcgagacgc cgccatttga tgagatccag
     3361 ccggagcatt tcctccccgc ctttgagcag gcctttgccg accactcggc cgaggtcgcc
     3421 gcgatcaccc atgatccctc gacccccgac ttcgacaaca ccgtcacggc gctggagcgc
     3481 tcgggcaagc tgctgaccaa ggtc
//
LOCUS       DASQVK010000134         3958 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_356227,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000134 DASQVK010000000
VERSION     DASQVK010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3958
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_356227"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..469)
                     /locus_tag="VE567_02820"
     CDS             complement(<1..469)
                     /locus_tag="VE567_02820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003046570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase dimerization
                     domain-containing protein"
                     /protein_id="HYZ47806.1"
                     /translation="MAVSDHVDLPTFIEGVKKRNPGQPEFVQAVQEVAEDIYDFIADK
                     EAYHSAQILRRIAEPDRVISFRVCWQDDKGNIRVQRGWRVQNNNAIGPYKGGIRFHPT
                     VTESVLKFLAFEQTFKNALTGLPMGGGKGGSNFNPKGKSANEVMRFCQSFMNEL"
     gene            564..689
                     /locus_tag="VE567_02825"
     CDS             564..689
                     /locus_tag="VE567_02825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47807.1"
                     /translation="MTGGKGRAVLLQATGNSTGEIAVLIAGGKIIDRPKLLDWRP"
     gene            complement(700..1347)
                     /locus_tag="VE567_02830"
     CDS             complement(700..1347)
                     /locus_tag="VE567_02830"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014077857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_function: GO:0019205 - nucleobase-containing compound
                     kinase activity [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HYZ47808.1"
                     /translation="MNIILLGPPGAGKGTQAARLVADRGMVQLSTGDMLRAAVKEGTP
                     VGLKAKAIMDAGELVPDEVVSALIGEALDRMGPEQGAIFDGYPRTAAQAEALDGILEA
                     RGRKLDHVIELDVDEDALVERITGRFTCAKCGTGYHDRFKLPKVEGICDVCGSHEFKR
                     RPDDNAETVRTRMAEYRAKTAPILPLYEARGIVSRVDGMADMDKVTHQIEAILHA"
     gene            complement(1371..2738)
                     /gene="secY"
                     /locus_tag="VE567_02835"
     CDS             complement(1371..2738)
                     /gene="secY"
                     /locus_tag="VE567_02835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HYZ47809.1"
                     /translation="MASRADALATNINLSKFGEATELKKRLWFTIGALIVFRMLSFIP
                     LPGIDPTALGLLANQTHGGVLDFFNTFSGGSLARMSIIALGVMPYITASIVVQLATTL
                     SPTLNAIKKEGESGRKRLNQYTRYGTVALTAIQGYFISVGLESFGAQQGVSAVVDPGL
                     LFRTTAVISLIGGTMFLMWLGEQITSRGVGNGVSLIIMAGIVAQLPTTLVNLFEGGRT
                     GSLSPLLIITIMVVALGLIGFICFMERAQRRVLIQYPKRQTARGMMQGDKSFLPLKIN
                     TSGVIPPIFASSLLLMPLTISQFAGQRVAGASAWGDFVIGLNQYLQHGSPVYMALYGA
                     GIIFFSFFYTAVVFNPEETADNLKRHGGFMPGIRPGKNTAEYLDYVLTRITVIGAAYL
                     TVICLLPEYMVAAAGIPFYLGGTSLLIVVNVTMDTVTQIQSHLLAHQYGDLIKKAKLK
                     GGRAR"
     gene            complement(2852..3382)
                     /gene="rplO"
                     /locus_tag="VE567_02840"
     CDS             complement(2852..3382)
                     /gene="rplO"
                     /locus_tag="VE567_02840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HYZ47810.1"
                     /translation="MKLNEIRDNEGARKGKIRVGRGIGSGKGKTGGRGQKGQKSREGV
                     SIAGFEGGQMPLHMRLPKRGFNNIFAKDYAEVNLGAIQKMVDAGKLATDGVVDHATLK
                     AAGLARGGQDGVRLLGKGDFSAKLSFRVAGVSAGARQAVEAAGGSIEVIEVVPAAEKA
                     AAKKNSVRDAKKAARA"
     gene            complement(3427..3606)
                     /gene="rpmD"
                     /locus_tag="VE567_02845"
     CDS             complement(3427..3606)
                     /gene="rpmD"
                     /locus_tag="VE567_02845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004208703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HYZ47811.1"
                     /translation="MAKIKIKQIGSPIRRTKDQRATLIGLGLNKMHKVSELEDTPEVR
                     GMIRKLPHMVEVVEG"
     gene            complement(3613..>3958)
                     /locus_tag="VE567_02850"
     CDS             complement(3613..>3958)
                     /locus_tag="VE567_02850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017670461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HYZ47812.1"
                     /translation="KMIRVPLREGRTLHHDGNGHFGAGRVTLRSAPQGTGIIAGGPMR
                     AVFESLGVADVVTKSVGTSNPYNMIRATFEALGEQTSPKSVAQRRGKKIADLLGRGGS
                     QTAEADAAAIVE"
BASE COUNT          649 a         1288 c         1260 g          761 t
ORIGIN      
        1 agagctcgtt catgaagctc tggcagaagc gcatcacttc gttggcgctc ttgcccttcg
       61 ggttgaagtt cgagcccccc ttgccgccgc ccatcggcag gcctgtcagc gcgttcttga
      121 acgtctgctc gaaagcgagg aacttcagca cgctttccgt gaccgtcggg tggaagcgga
      181 tgccgccttt atagggcccg atggcgttgt tgttctggac gcgccagccg cgctgtacgc
      241 ggatattgcc cttgtcgtcc tgccagcaga cacggaacga gatgacgcga tcgggctcgg
      301 cgatccggcg caggatttgc gcgctgtgat acgcctcctt gtccgcgatg aaatcgtaaa
      361 tatcctcggc gacttcctgg acggcctgga cgaactcggg ctgccccgga ttgcgcttct
      421 tcaccccctc gatgaacgtc ggaagatcga catggtcgga aactgccatt cttttttgcc
      481 ccctgtttgt gcgggtcgat gaacccaatg accgaacagc ccttttgatt cgaggctgtt
      541 acggaggcga gcgttagcac agtttgacgg gaggcaaagg ccgggccgtc ctgctccagg
      601 cgacaggcaa ttcgaccggc gaaatcgccg tcctgatcgc cggcggcaag atcatcgacc
      661 gaccaaagct gctggactgg cggccctagc tcgccggctt cacgcgtgca ggatcgcttc
      721 gatttggtgg gtcactttgt ccatatcggc catgccgtcg acccgcgata cgatgccccg
      781 cgcttcgtag agcggcagga tcggcgcggt tttcgcgcga tattcggcca tacgggtgcg
      841 gaccgtttcg gcattgtcgt cggggcggcg cttgaactcg tggctgccgc acacgtcgca
      901 aatgccctcg accttcggca gtttgaatcg gtcgtgatag cccgtgccgc atttggcgca
      961 ggtaaagcgg ccggtgatgc gctccaccag cgcgtcctcg tccacgtcta gttcgatcac
     1021 atggtcgagc ttgcgccccc gcgcctcgag aatcccgtcg agcgcttcgg cctgggcagc
     1081 ggtgcgcgga tagccgtcga agatcgcgcc ctgttcgggg cccatgcggt ccagcgcctc
     1141 gccgatcagc gcggagacga cttcgtcggg caccagctcg cccgcatcca tgatcgcctt
     1201 ggccttgagg ccgaccggcg tgccttcctt gacggcggcg cgcaacatgt cgccggtgga
     1261 cagctggacc atgccgcgat cggccacgag ccgggccgcc tgggtgccct tccctgcgcc
     1321 cggcgggccc agcaggatga tgttcattgc gtccccctcc cgggccagtc ttatcgggcg
     1381 cggccccctt tgagcttcgc cttcttgatc agatcgccat attgatgggc gagcaagtgg
     1441 ctctggatct gcgtcaccgt atccattgtc acgttgacga cgatcagcag gctggtgccg
     1501 cccagataga acggaatgcc ggcggccgcg accatatatt ccggcagcag acagatcacc
     1561 gttagatagg cggcgccgat caccgtgatg cgggtcagca cataatccag atattcggcc
     1621 gtgttcttgc ccggccggat gccgggcatg aagccgccat ggcgcttcag attgtcggcc
     1681 gtttcctccg gattgaagac gaccgcggtg tagaagaagc tgaagaagat gatgcccgcc
     1741 ccatagagcg ccatgtacac gggcgacccg tgctgcagat actggttcag cccgatcacg
     1801 aaatcgcccc aggcgctggc acccgcgacc cgttggccgg cgaactggct gatcgtcagc
     1861 ggcatcagca gcagcgagga cgcgaagatc ggcgggatca cgcccgacgt gttgatcttc
     1921 aacggcagga agcttttgtc cccctgcatc atgccgcgcg cggtctggcg cttcggatat
     1981 tggatcagca cccgtcgctg ggcgcgctcc atgaaacaga tgaagccgat caggcccagt
     2041 gccaccacca tgatcgtgat gatcagcagc ggtgagaggc tgccggtgcg gccgccctcg
     2101 aacaggttga cgagcgtggt cggaagctgc gcgacgatgc ccgccatgat gatcagcgac
     2161 acgccattgc cgacgccgcg gctggtgatc tgctcgccca gccacatcag gaacatcgtg
     2221 ccgccgatca gcgagatgac ggccgtggtg cggaacagga ggcccggatc gacgaccgcc
     2281 gagacgcctt gctgcgcgcc gaagctctcc aggccgacag agatgaaata gccctggatc
     2341 gcggtcagcg cgacagtgcc atagcgcgtg tactggttca gccgcttgcg gccgctttcg
     2401 ccttccttct tgatcgcatt cagcgtcggg ctgagcgtcg tggcgagttg cacgacgatc
     2461 gaggccgtaa tgtagggcat cacgccgagc gcgatgatcg acatgcgcgc gagcgagccg
     2521 cccgagaagg tattgaagaa gtcgaggacg ccgccatgag tctggttggc gagcaggccg
     2581 agcgcggtcg ggtcaatgcc gggcagcgga atgaagctca gcatgcggaa gacgatcagc
     2641 gcgccgatcg tgaaccagag ccgcttcttg agctcggtcg cctcaccgaa cttcgacagg
     2701 ttgatgttgg tcgccagtgc gtcggcccga gatgccatgt gaatttatcg tcctgaaaga
     2761 caaagcggcg gagaagcgaa tgccgctccc cgccgcccat ataatgtcgt ccgcgcgctt
     2821 gtctaagccc gcatgagccg gcggcgggag tttatgcccg cgccgccttc ttggcgtcgc
     2881 gcacgctgtt cttcttggcg gcggctttct cggcggcagg cacaacttcg atcacctcga
     2941 tcgacccgcc tgcggcctcg accgcctggc gcgcgcccgc cgaaacgccg gcaacgcgga
     3001 agctgagctt ggccgagaaa tcgcccttgc cgagcagccg gacgccgtcc tggccaccgc
     3061 gggcgaggcc ggcggccttc agcgtcgcat ggtcgaccac gccgtcggtc gcgagcttgc
     3121 cggcatcgac catcttctgg atcgcgccca gattcacctc ggcatagtcc ttggcgaaga
     3181 tgttgttgaa gccgcgcttc ggcaaccgca tgtggagcgg catctggccg ccttcgaagc
     3241 cggcgatgga cacgccctcg cggctcttct gacccttctg gccccggccg ccggtcttgc
     3301 ccttgcccga gccgatgccc cggcccacgc ggatcttgcc ttttcgcgcg ccttcgttgt
     3361 cgcggatttc gttcagtttc attgcactcg ctttcgcttt tgtcgcgccg tgaaggaagc
     3421 ggaggctcag ccctccacaa cctcgaccat gtggggcagc ttgcggatca tgccgcggac
     3481 ttcgggggtg tcctcgagtt cgctgacctt gtgcatcttg ttgaggccca ggccgatcag
     3541 cgttgcgcgc tgatccttgg tgcggcggat cggcgagccg atctgcttga tcttgatctt
     3601 tgccatgctc gcttactcca cgatcgcggc tgcgtccgcc tcggcggtct gcgagccgcc
     3661 gcggccgagc aggtcggcga tcttcttgcc gcgccgctgc gcgaccgact tcggcgaagt
     3721 ctgctcgccc agtgcctcga aagtggcgcg gatcatgttg taggggttgg acgtgccgac
     3781 cgacttggtc acgacatcgg cgacgcccag gctctcgaac accgcgcgca tcggaccacc
     3841 ggcgatgatg ccggtgccct gcggcgccga acgaagcgtc acccggcccg cgccgaaatg
     3901 gccgttgccg tcatggtgca aggtccggcc ctcgcgcagc ggcacgcgga tcatcttc
//
LOCUS       DASQVK010000135         3385 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_451543,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000135 DASQVK010000000
VERSION     DASQVK010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3385
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_451543"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            6..359
                     /locus_tag="VE567_02855"
     CDS             6..359
                     /locus_tag="VE567_02855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HYZ47813.1"
                     /translation="MRTLLAYVRSGDPDLTNRQMALLLLVYLKPGPHTVRGLAKALNV
                     SKPVVTRALNRLGALGYLRRQRDDADRRNIFVAPTSEGADFLEHFKTLIGSGGNGQGG
                     EKRSQRSETREPVHA"
     gene            262..1203
                     /locus_tag="VE567_02860"
     CDS             262..1203
                     /locus_tag="VE567_02860"
                     /inference="COORDINATES: protein motif:HMM:NF013073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NlpC/P60 family protein"
                     /protein_id="HYZ47814.1"
                     /translation="MSISKRSSAAAATAKAARSEASAAKPANRCTPDRRRFALTGPSR
                     ALDHRQHAARRDLADIDLAGRWFAPHYAIPETQSCGFAGADILASPSATAPRISQLLP
                     GEAFAVLEASGGWAWGYGLHDRYVGYVWADALGAPVEPTHLVEARAALLFAEPSSRAA
                     VRAVLPIGARLAGQAEGDFLETADGFVPRQQLRPIECLTDDPVEVAEQLIGMPYLWGG
                     RGIGGIDCSGLVQLAFGLAGVSVPRDSDQQAAAGRAAAANARRGDLLFFPDHVALLAG
                     PDTVVHASGHWMEVRIESLADLVARLGTPIARRRVLP"
     gene            1200..2120
                     /gene="argC"
                     /locus_tag="VE567_02865"
     CDS             1200..2120
                     /gene="argC"
                     /locus_tag="VE567_02865"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010337935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HYZ47815.1"
                     /translation="MTATVFIDGGAGTTGLEIADRLAGRADLELVRLDESRRKDPAAR
                     REALNDVDAVILCLPDDAAREAVALIDNPRTRVIDASTAHRVAPGWVFGFPEVSGRET
                     VASALRVSNPGCYSTGFIALVQPLVATGLVAADRMLSCNAVSGYSGGGKSMIAEFESG
                     QAPTAWRTYALSAAHKHVPEMQRLCGLAHPPLFAPSVASLYRGMVVEVPLQDAPPLDE
                     LREALANAYAGQKLVRVADEAETGRMAAVTIERLANTDRLELFVFGNAARRQARLIAV
                     LDNLGKGAAGAAVQNLNLMLGVDELTGLKI"
     gene            complement(2299..2985)
                     /locus_tag="VE567_02870"
     CDS             complement(2299..2985)
                     /locus_tag="VE567_02870"
                     /inference="COORDINATES: protein motif:HMM:NF024600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47816.1"
                     /translation="MSEILQRGVNGSSWTDHELATSRAIARTGRRSKSMKSGTRGAAY
                     PLMFALSGASIFNGLTPDEYRSFVMLKGLMLASAVAIAAPALAQTAAPASTNAAQPVA
                     AATPPAAAATPAAPSDPTTATTAAPATSATPATQATPAASAQKGTNPASAVAAVVESD
                     WTKYDADGNGTLSKAEFAAWMAALREQSPAQKAAVKDPAAWTAAAFAKADKDKSGTLS
                     KGELEGFLKG"
     gene            2984..>3385
                     /locus_tag="VE567_02875"
     CDS             2984..>3385
                     /locus_tag="VE567_02875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HYZ47817.1"
                     /translation="MVPRYSRPEMVSIWTPETRFQIWFEIEAHALDAMAELGIVPKEA
                     AKKVWEAHRYSPPFDIARIDAIEAETKHDVIAFLTHVSERTGAEARFLHQGMTSSDVL
                     DTCLAVQLARATDLLIADLDALLAVLKRRAFE"
BASE COUNT          526 a         1099 c         1156 g          604 t
ORIGIN      
        1 catggatgcg aacgctgctc gcttacgttc gctcgggcga ccctgatctg accaatcggc
       61 agatggcgct gctgttgctc gtctatctga aaccgggccc gcacacggtg cggggcctgg
      121 ccaaagcgct gaacgtctcc aaacccgttg taacccgcgc cttgaatcgt ctcggtgcgc
      181 tcggctatct gcgccgccag cgtgacgacg cggaccgccg caacatcttc gttgcgccga
      241 cgtcagaagg ggcggatttc cttgagcatt tcaaaacgct catcggcagc ggcggcaacg
      301 gccaaggcgg cgagaagcga agccagcgca gcgaaacccg cgaaccggtg cacgcctgat
      361 cggcgccgct ttgcactaac gggcccctcc cgggccctcg atcatcgcca gcacgctgcc
      421 cggcgcgacc tggcggacat tgatctggct ggacgctggt tcgcccccca ctatgccatt
      481 cccgagacgc agagctgcgg gtttgccggc gctgacatcc ttgcgagccc ctctgcgacc
      541 gcgccgcgga tcagccagct cttgcccggc gaggccttcg cggtgctgga agcaagcggc
      601 ggctgggcat ggggctatgg cctgcacgac cgctatgtcg gctatgtttg ggcggacgcg
      661 ctcggcgcgc cggtcgaacc gacccatttg gtcgaagcgc gcgcagcact gctgttcgcc
      721 gagccgtcga gccgggccgc cgtccgcgcc gtcctgccga tcggcgcgcg gctggccggc
      781 caggcggaag gcgattttct cgaaaccgcc gacggatttg tgccgcggca acagcttcgt
      841 ccgatcgagt gcctgaccga tgatcccgtc gaagttgccg agcagctgat cgggatgccc
      901 tatctgtggg gcgggcgcgg catcggcggg attgactgtt cagggctggt ccagctcgcc
      961 ttcgggctgg cgggagtctc tgtgcctcgt gacagcgatc agcaggcggc cgccggccgc
     1021 gcggccgcag ccaatgcgcg gcgcggcgac ctgctcttct tcccggacca tgtcgcgctg
     1081 cttgccgggc cggacactgt cgtgcatgcg agcggccatt ggatggaggt caggatcgaa
     1141 tcacttgccg acctcgttgc gcggctgggc acgccgatcg cgcggcggcg ggtgctgcca
     1201 tgacggcgac ggtcttcatc gacggcggcg ccggcaccac gggcctcgaa atcgccgatc
     1261 ggctcgcggg ccgcgcggac ctggagctgg tccgtctcga cgaaagccga cgcaaggacc
     1321 cggctgcacg gcgggaggcg ctgaacgatg tcgacgccgt gatcctctgc ctgcccgacg
     1381 atgcagcgcg ggaggcggtc gcgctgatcg acaatccgcg cacgcgcgtg atcgacgcat
     1441 ccactgcgca ccgggtggcg ccgggctggg tctttggctt tccggaagtc tcgggacgag
     1501 aaacggtcgc gtctgccctg cgggtgtcga accccggctg ctattcgacc ggcttcattg
     1561 ccctcgtgca gccgcttgtt gcgaccgggc tagtcgcggc cgaccggatg ctcagctgca
     1621 acgccgtgtc gggctattcg ggcggcggga agtcgatgat tgcggagttt gagagcgggc
     1681 aggccccgac cgcgtggcgc acctatgcgt tatccgccgc gcacaagcat gtgcccgaaa
     1741 tgcagaggct gtgcggcctc gcgcatccgc cgctcttcgc accgtcggtc gccagccttt
     1801 ataggggtat ggtggtcgaa gtgccgctgc aagacgctcc gccgctggac gagctgcggg
     1861 aggcgctggc caacgcttat gcggggcaga agcttgtccg cgtcgccgat gaggcggaga
     1921 cggggagaat ggcggcagtg acgatcgagc ggctggcgaa caccgatcgg ctagagctgt
     1981 tcgttttcgg caatgcggcg cggcgtcagg cccggctgat tgcggtgctc gacaatctgg
     2041 gcaaaggcgc cgccggggcc gcggtacaga atctcaatct gatgctgggc gtggacgagc
     2101 tgaccgggct gaaaatctag ccgtctagat cgtttggata agcagcagca cgagccagct
     2161 tcccatcagc aaggcatgaa ggtgcaaagc tgatgcgata agttgggagc gctcgcggca
     2221 ggcgctcccc ggatcggggc ccggggatgc tacctgccgc acgcccctcc ccataaggga
     2281 ggggaagtgg aagcggcctc agcccttcag aaagccttcg agttcgccct tgcttagggt
     2341 tccgctcttg tccttgtcgg ctttggcgaa agcggcggcc gtccaggcgg ccgggtcctt
     2401 cactgcggcc ttttgggccg ggctctgctc gcgcagggcg gccatccaag cggcgaattc
     2461 cgccttcgac agtgtgccgt tgccatcggc atcgtatttc gtccagtccg actcgacgac
     2521 ggcggcaacg gcgctggcag gattggtgcc tttctgagcc gaagccgcag gagttgcctg
     2581 cgtcgctggg gttgccgacg ttgcgggagc ggctgtcgtt gcggtcgtcg gatcactcgg
     2641 agcggcggga gtcgcggcgg ccgctggtgg cgtagcggcg gcgacgggct gcgccgcgtt
     2701 ggtggaagca ggcgcagcgg tctgcgccag cgcgggagcg gcgatggcaa ccgcgctcgc
     2761 cagcatcagg cctttcagca tcacaaaact cctatattca tctggcgtta agccattgaa
     2821 aatgcttgcc ccacttaggg cgaacatcaa cggatacgca gctcccctcg ttccactctt
     2881 cattgatttg ctgcgcctgc ccgtccttgc tatcgcccgg ctcgtcgcaa gttcgtggtc
     2941 agtccaggac gagccgttca ccccgcgctg caggatttcg ctcatggttc cccgctattc
     3001 gcgtcccgag atggtctcga tctggacgcc cgagacccgc ttccagatct ggttcgagat
     3061 cgaagcgcat gcgctcgacg caatggcgga gctgggcatc gtaccgaagg aagcagcgaa
     3121 gaaggtctgg gaagcgcatc gttacagccc gccgttcgac attgcgcgga tcgacgcgat
     3181 cgaggccgag accaagcatg acgtcatcgc tttcctgacg cacgtctctg agcgcaccgg
     3241 cgcggaagca cgcttcctgc accagggcat gaccagctcg gacgtgctcg acacctgcct
     3301 ggccgtccag cttgcccgcg ccaccgacct gttgattgcc gatctcgacg cgctgctggc
     3361 ggtgctgaag cgccgggcgt tcgag
//
LOCUS       DASQVK010000136         5445 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_72212, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000136 DASQVK010000000
VERSION     DASQVK010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5445)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5445)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5445
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72212"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..303
                     /locus_tag="VE567_02880"
     CDS             <1..303
                     /locus_tag="VE567_02880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HYZ47818.1"
                     /translation="AAHRGIFAEHRDLYRRPLTSTELNRFDGIVLDPPRAGAEAQVAQ
                     LAASTVPRIAYVSCNPASFARDAKLLVAGGYRLERIAPVGQFRWSTHVELCGAFTR"
     gene            complement(364..792)
                     /locus_tag="VE567_02885"
     CDS             complement(364..792)
                     /locus_tag="VE567_02885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003043705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HYZ47819.1"
                     /translation="MKADLLAPAAVLVLWTLVMLVWMAATRLPALKAAGIDMSKAVGG
                     RGQDLEGVLPAQVNWKAHNYAHLVEQPTLFYAVIGILAIMGRVSTAAIILAWAYVALR
                     IAHSVVQATSNRISIRFPIFAAATMVLMALTVLALLRTLG"
     gene            complement(858..1907)
                     /locus_tag="VE567_02890"
     CDS             complement(858..1907)
                     /locus_tag="VE567_02890"
                     /EC_number="2.5.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase"
                     /protein_id="HYZ47820.1"
                     /translation="MNDLVNDTRKAELLSTTVEHIDIRTFDARPIIDAMGKMSFTSRD
                     LARATRIYNTMLEDKDCSIFLVIAGSTSAGGCMDLYAELVRSNMVDGIVATGASIVDM
                     DFFEGLGHKHFQALEIPDDNTLRSLYIDRIYDTYIDEVALQETDHTIGEIANALEPKA
                     YSSRAFIREMGKYLAAHGKKENSLVKLAYEHDVPIFCPAFTDSSAGFGLVKHQVDRMK
                     EGKPYMVLDSIADFRELTQIKIEAGTTGLLMIGGGVPKNFIQDTVVCAEILGHEDVEM
                     HKYAVQITVADVRDGACSSSTLKEAASWGKVDTALEQMVFAEAGSVMPLLASDAYHRG
                     AWKTRPERRWAKLFA"
     gene            complement(2027..3211)
                     /locus_tag="VE567_02895"
     CDS             complement(2027..3211)
                     /locus_tag="VE567_02895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III PLP-dependent enzyme"
                     /protein_id="HYZ47821.1"
                     /translation="MHKHHSALGLAAALRPVQPVTLVRPHAARRAAHFFVEKFPGRTL
                     YAVKANPSPDLIRILWDSGVTHYDVASIAEVRMVRETLPEAVLCFMHPVKAEEAIEEA
                     YFEHGVRTFSLDTIEELDKIVRATNGATDLTLCVRLRVSSDYSKLSLASKFGIGPVEA
                     KEVLMAARQVADALGICFHVGSQAMTPDAYAQAMERVRQAIVEAAVTVDVIDVGGGFP
                     SSYPGMEPPPLELYFETIHRAFESLPVSYSAELWAEPGRALCAEYSSLVVRVEKRRGN
                     ELYINDGAYGALFDAAHVGWRFPVSLLREPDSRAKPLAFSFYGPTCDDLDHMAGPFML
                     PADVQPGDYLEIGMLGAYGCAMRTGFNGFGKAETVEVEDEPMVSLYTGTEREVASNVV
                     KL"
     gene            3428..4327
                     /locus_tag="VE567_02900"
     CDS             3428..4327
                     /locus_tag="VE567_02900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine dehydratase"
                     /protein_id="HYZ47822.1"
                     /translation="MGGPTPLLQGEICGRIVYFKAESLQPMGAFKLRGAWHRLTDLTD
                     AERARGVVAFSSGNHAQGVAWAARRLGIRATIVMPADSPAKKLDNTRALGADVVLYDR
                     MTESREDIAARIAEEHGSIVVPSFDDPWVVEGQGTAGLEACNQMAALGIDPPDRIVTP
                     CGGGGLASGLALAVPEAEIVIVEPEGWDDMTRSLAGGEIVPVGPNPPPTSCDALQTLK
                     VAPLTFGILRDRSARGVAASEAEAGQAMRWAFENLRLVLEPGGAVALAALLAGKVEPS
                     ARTLVLLSGGNVDAATFKRMVSL"
     gene            4324..4485
                     /locus_tag="VE567_02905"
     CDS             4324..4485
                     /locus_tag="VE567_02905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011950902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47823.1"
                     /translation="MTGPSALVLSVLMLAAGALIWGGIVQIRRREKRGWLMLVAAAVL
                     FGNVLIWSV"
     gene            complement(4497..4979)
                     /locus_tag="VE567_02910"
     CDS             complement(4497..4979)
                     /locus_tag="VE567_02910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47824.1"
                     /translation="MADRKRLLLDLFTEISAVEHLVRNHIGQLQATELNAGQFGALNH
                     FVRNALDQERKSILAWAFQVPIEQMDLHLTALEERGLIGRIGQGDDQIIGITAAGRAA
                     HADAIQAMTPEFEPLMSEFADADLAKTVEVLQEIRRTFDNLPERLSSQIPDCSPSSGC
                     "
     gene            complement(4999..>5445)
                     /locus_tag="VE567_02915"
     CDS             complement(4999..>5445)
                     /locus_tag="VE567_02915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010164234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYZ47825.1"
                     /translation="SQGTFDNGVGELSDAASALDWVQSFHPEAQQTWVAGVSFGAWIG
                     MQLLMRRPEVRGWISIAPPANMYDFSFLAPCPASGIVIQGEADEVVTPSAVQKLVDKL
                     RTQKHITVHHDTVPGANHFFEKEMPQLMGSVDKYLDFRLDPNCPIK"
BASE COUNT          946 a         1737 c         1776 g          986 t
ORIGIN      
        1 gccgcccatc ggggcatctt cgccgagcat cgcgaccttt accgccggcc gctgaccagc
       61 accgagctga accggtttga cggcatcgtg ctcgatccgc cccgcgccgg cgccgaagcc
      121 caggtcgcgc agctcgccgc ctcgaccgtg ccgcggatcg cctatgtctc ctgcaacccc
      181 gccagcttcg cccgcgacgc gaaactgctg gtcgcgggcg gctatcgcct cgaacggatc
      241 gcgccagtcg gccaattccg ctggtccact catgtggagc tatgcggggc gttcactcgg
      301 taaacgcccc atagctgttg acaagctgtg gataagctgt gggtactttg gggaatgagc
      361 tcgtcagccg agcgtgcgaa gcagggccag aacggtcagc gccatcaaga ccatggtcgc
      421 cgctgcgaaa atcggaaaac ggatcgagat ccggttcgag gtggcctgca ccacgctgtg
      481 cgcgatccgc agcgcgacat aggcccaggc cagtatgatc gccgcggtgc tgacgcggcc
      541 catgatcgca aggatgccga tcacggcgta gaagagcgtg ggctgctcga ccagatgcgc
      601 ataattgtgc gccttccagt taacttgcgc cggtagcacg ccttccagat cctggccgcg
      661 tcccccgaca gccttgctca tatcgatgcc cgctgctttc agggccggca ggcgcgtcgc
      721 cgccatccag acgagcatga caagcgtcca gagcaccagc acggcggccg gcgccagcaa
      781 atcggctttc atagtgaccc tccccggtcg ttacagttct gaaactgcgc gacgaagcgg
      841 ggagggtcaa gacaccgtta agcgaacagt ttcgcccagc gccgctccgg ccgggtcttc
      901 cacgcaccgc ggtgataagc gtcgctggca aggagcggca tgacgctgcc ggcctcggcg
      961 aacaccatct gctcgagcgc agtgtcgacc ttgccccagc tcgccgcttc cttgagcgtc
     1021 gaggaggagc aggcgccgtc gcgaacgtcc gcgaccgtga tctgcacggc atatttgtgc
     1081 atctcgacgt cttcatggcc cagaatctcg gcgcagacga ccgtgtcctg gatgaagttc
     1141 ttcggcacgc cgccgccgat catcagcagg cccgtggtgc ccgcctcgat cttgatctgt
     1201 gtcagctcgc ggaagtcggc gatcgaatcg agcaccatat acggcttgcc ttccttcatc
     1261 cggtcgacct ggtgcttgac aaggccgaag cccgccgagc tgtcggtgaa ggccgggcag
     1321 aagatcggca cgtcatgctc ataggcgagc ttgacgaggc tgttctcctt cttgccgtgc
     1381 gcggcgagat acttgcccat ctcgcggatg aacgcgcgcg acgaataggc tttcggctcc
     1441 agcgcattgg cgatctcgcc gatggtgtgg tcggtctcct gcagcgccac ttcatcgata
     1501 taggtatcgt agatgcggtc gatatagagc gaccgcagcg tgttatcgtc ggggatttca
     1561 agcgcctgga agtgcttgtg gccaagccct tcgaagaaat ccatgtcgac gatcgaagcg
     1621 ccggtggcga cgatgccgtc caccatgttg gagcggacca gctcggcata aaggtccatg
     1681 cagccgccgg ccgaggtcga gcccgcgatc accaggaaga tgctgcagtc cttgtcctcc
     1741 agcatcgtgt tgtagatgcg cgtggcgcgc gccaggtcgc ggctggtgaa gctcatcttc
     1801 cccatcgcgt cgatgattgg ccgcgcgtcg aatgtgcgga tgtcgatatg ctcgacagtg
     1861 gtcgacagca gctccgcttt gcgggtgtcg ttgacgaggt cgttcatgtc caaagtctct
     1921 cttctcacaa gaaccgccgt cgttgcgggg acgtggaaac ccgtgagggt gacggcgcgc
     1981 cgcagcgcac cgcccccgat cctttcagcc ggctagtgaa cggccgttac agcttcacga
     2041 cgttcgaggc gacctcgcgc tccgtgccag tgtagagcga gaccatcggc tcgtcttcca
     2101 cttccaccgt ctcggccttt ccgaagccgt tgaagcccgt gcgcatcgcg cagccatagg
     2161 cgccgagcat cccgatttcg agatagtcgc ccggctgcac gtcggcgggc agcatgaacg
     2221 gccccgccat gtgatcgaga tcgtcgcagg tcggtccgta gaagctgaat gccagcggct
     2281 tggcccggct gtccggctcg cgcagcaggc tgacggggaa gcgccagccg acatgcgcgg
     2341 cgtcgaacag cgcgccatag gcgccgtcat tgatgtacaa ctcgttccct cggcgctttt
     2401 cgacgcgcac gaccagcgag ctatattcgg cgcacagcgc gcggcccggc tcggcccaca
     2461 gctcggccga gtagctgacc ggcaggctct cgaacgcgcg gtggatcgtc tcgaaataaa
     2521 gctcgagcgg cggcggctcc atgcccggat aggagctcgg aaagcccccg ccgacatcga
     2581 tcacgtccac cgtcaccgcc gcctcgacga tcgcttggcg cacccgctcc atcgcctggg
     2641 cataggcgtc gggcgtcatc gcctggctgc cgacatggaa gcagatgccg agcgcatccg
     2701 cgacctggcg agcggccatc agcacctcct tcgcctcgac cggcccgatg ccgaatttgg
     2761 aggcaaggct gagcttcgaa tagtccgacg agacgcgcag gcgcacgcag agcgtcagat
     2821 cggtcgcgcc gttggtcgcg cggacgatct tgtccagctc ctcgatcgtg tcgagcgaga
     2881 aggtgcggac gccatgttcg aaataggctt cctcaatcgc ttcctcggcc ttcaccgggt
     2941 gcatgaagca cagcacggcc tcgggcagcg tctcgcgcac catgcgcacc tcggcaatcg
     3001 aggccacgtc ataatgggtg acgccgctat cccacaggat gcggatcaga tcgggcgacg
     3061 gattcgcctt caccgcatag agcgtgcgcc ccggaaactt ctcgacgaag aagtgggcgg
     3121 cgcgccgggc ggcgtgcgga cgaacgagcg tgaccggctg gaccggtcga agggcggcag
     3181 ctagccccag cgcgctatga tgcttgtgca actcaaggga cctccatgtg cccaagtggg
     3241 cgtcgttggc aaaaaagctg ccttgcggtg gaagtccctt ggggcagcgg acgcgcgata
     3301 tatggacggg ggtccaccct gtaaagaacc gattttttga aatatttcat ttcggagaca
     3361 aggcgtgatt tttgggcggc aacccggtcc cgatgggatc gtcaaggcac tgagaaagct
     3421 ggaaactatc ggtggtccca caccgcttct ccaaggcgag atttgcggca gaatcgtcta
     3481 tttcaaagcc gaatcgctgc agccgatggg agcgttcaag ctgcgcggcg cgtggcaccg
     3541 actcactgat cttacggatg cggagcgggc gcgcggagtc gtcgcctttt catccgggaa
     3601 tcacgctcag ggcgtcgcct gggcggcgcg gcgactcggc atccgcgcga caatcgtgat
     3661 gcccgccgat tcgccggcca agaagctcga caacacccgc gcgctgggtg ccgatgtcgt
     3721 actgtacgat cggatgacgg agagccgcga ggacattgcc gcgcgcattg ccgaggagca
     3781 tggctcgatc gtcgtgccga gcttcgacga tccgtgggtc gtcgaggggc aggggacggc
     3841 ggggctggag gcctgcaacc agatggccgc gcttggcatc gatccacccg accggatcgt
     3901 cacgccctgc ggcggcggcg ggctcgcctc ggggctggcg ctggccgttc cagaggcgga
     3961 gatcgtcatt gtcgagccgg agggctggga cgacatgacc cgctccttgg ccggtggcga
     4021 gatcgtgccg gtggggccga acccgccgcc cacctcatgc gacgcactgc agacgctgaa
     4081 agtcgccccg ctgaccttcg gcatcctgcg ggaccgcagc gcgcgcggcg tggccgcgag
     4141 tgaggcggag gcgggccagg cgatgcgctg ggcattcgaa aatctgcggc tggtgctgga
     4201 gccgggcggc gccgtggccc tggcggcgct gctggcgggc aaggtcgagc cgagcgcgcg
     4261 cacgctggtc ctgctttcgg gcggcaatgt cgacgctgcg acgttcaagc ggatggtaag
     4321 cctgtgacgg gtccatccgc ccttgtcctg tccgtgctga tgctggccgc cggcgctctg
     4381 atctggggcg gcatcgtgca gatccggcgc cgcgagaagc gcggctggct gatgctggtc
     4441 gcggcggccg tgctgttcgg caacgtcttg atctggagcg tgtgagacgc gctggttcag
     4501 caacccgaag aaggtgagca gtctggaatc tgggaggaca gccgctccgg taaattatcg
     4561 aaggtgcggc ggatctcctg aagcacttcg actgtctttg cgagatctgc atccgcgaat
     4621 tcggacatca gcggctcgaa ctcgggcgtc atggcctgga tcgcatcggc gtgcgccgcg
     4681 cggccggccg ccgtgatgcc gatgatctgg tcgtcgcctt ggccgatccg cccgatcagc
     4741 ccgcgttcct cgagcgccgt caggtgcagg tccatttgct cgatcggcac ctggaatgcc
     4801 caggcgagaa tcgatttccg ttcctgatcg agagcgttgc ggacaaagtg attgagcgcg
     4861 ccgaattgcc cggcgttcaa ctcggtcgcc tgaagctggc ctatatggtt gcggacgaga
     4921 tgctcgaccg ccgatatttc ggtgaacagg tccagcagca gtctcttgcg atcggccata
     4981 acttccccgt ttgggcggtc acttgatcgg gcagttcgga tccagccgga agtcgagata
     5041 tttgtccacg ctccccatca gctgcggcat ttccttttcg aagaaatgat tcgcgcccgg
     5101 aacggtgtcg tgatggacgg tgatatgctt ttgcgtgcgc agcttgtcga ccagcttctg
     5161 cacggccgaa ggcgtcacca cttcatccgc ctcgccctgg attacgatgc cggaggccgg
     5221 gcagggcgcg agaaagctga aatcgtacat attcgccggc ggcgcgatcg agatccagcc
     5281 gcgcacttcc ggacggcgca tcagcaattg catgccgatc cacgcgccga agctcacgcc
     5341 cgccacccag gtctgctgcg cttcgggatg gaagctctgc acccagtcaa gcgccgacgc
     5401 ggcgtccgag agttcgccga cgccattgtc gaacgtgccc tggct
//
LOCUS       DASQVK010000137         3286 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_135054,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000137 DASQVK010000000
VERSION     DASQVK010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3286
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135054"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            323..2500
                     /locus_tag="VE567_02920"
     CDS             323..2500
                     /locus_tag="VE567_02920"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010404095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HYZ47826.1"
                     /translation="MRGVSRARVLLLNPALGPLDYRVPRGMEVEPGSIVLAPLGPRQL
                     AGVVWEPERMPSDAEVGDNRLRNLIGVYDAPPLPASLRRLVEWTADYYLAPPAAVLRM
                     ALSSSSALEGGRTVLEYRATGRVPDRLTPQRAQALERIGDRQGLVRELALIAGVSDAV
                     IRGLCKAGAIEPVEVSLDTPFEAPDPDHAPPELTPAQAAAAERFVRAVHARSFQPFLL
                     DGVTGSGKTEVYFEGVAAALREGRQCLVLLPEIALTEPFLRRFTARFGVLPVAWHSDL
                     RQSQRRRAWRAIASGEAKVVVGARSALFLPYRDLGLIVVDEAHEASFKQEDGVQYHAR
                     DTAVMRGRFEDIPVILASATPAIETRHQVELGRYEEVKLPARFGGAQLPEIAAIDLLA
                     DPPPRGHWLAPTLVKAIEATLERGEQALLFLNRRGYAPLTLCRHCGHRFQCPNCTAWL
                     VEHRLVHRLQCHHCGLIARPPDFCPECKAEDSLVACGPGVERIADEVAALFPDAPRAI
                     VTSDTIWSPAKAAEFVARMEAGDISIVIGTQLVTKGYHFPNLTFVGVVDADLGLSGGD
                     LRAAERTFQQIAQVAGRAGRGSKPGHVFIQTHDAKAPVIEALVSGDTESFYAAETDAR
                     REAGAPPFGRLAAIIISSENAQAALETARLIGKTAPPIEGMHVYGPAPAPLAMLRGRH
                     RHRLLVHATRSLDVQDVVRNWLGSLDWPNSVRVAVDVDPYSFL"
     gene            2566..>3286
                     /locus_tag="VE567_02925"
     CDS             2566..>3286
                     /locus_tag="VE567_02925"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYZ47827.1"
                     /translation="MFRALFTAAALLVATPALAAFQSDRISVTTEGTGPDVVLVHGLA
                     SSPRVWKGTVERVPGYRYHLVQIAGMGAMPPGGNAQGAVIAPVAEEIARYIREEKLRQ
                     PALIGHSMGGTIALMIAARHPDEVGKLMVVDMHPFVGLMFGGPTATADSVRPIADAMR
                     ARSAKATPEERLQERERSIVSMINTESERAGPIEDAKASNPDTVANAFSELIVTDLRP
                     ELGSIKATTTVLYITPKGAPFT"
BASE COUNT          495 a         1210 c         1038 g          543 t
ORIGIN      
        1 gcctgtcacc tgaccgggcg tcgcctgact gagatccgcc cattgaacca cgactgcatt
       61 ggctgctgaa ccgcccagcg agagcacggc gattgcgccc agcaaggtgc ctttcatagc
      121 atcacccctt tcctcgttcg cgtgatcgtt cgaatcgact caaatcactg cgacccgccg
      181 ggacgttttt tctgcagatt tcggcgaagc aatcgaacgc atttcgttcg atccggttcc
      241 ggtccaaaat agccctctcc ggagaacctg gccgcggctg cagaacggct tgcgcttttg
      301 acagcgaggc gcgggcgctt agatgcgggg cgtgtcccgc gcccgcgttc tcctgctcaa
      361 ccctgcgctt gggccgctcg attatcgcgt gccgcgcggc atggaggtcg agccgggctc
      421 gatcgtgctc gcgcctttgg gcccgcgcca gctcgccggc gtggtttggg agcccgagcg
      481 catgccgtcc gacgcggaag tcggcgacaa ccggctccgc aacctgatcg gcgtgtacga
      541 cgccccgcca ctgcccgcgt cgctgcgccg actcgtcgag tggacggccg attattacct
      601 cgccccgccc gccgcggtgc tgcggatggc gctgtcgtcc tcctcggcgc tggagggcgg
      661 gcgcaccgtg ctcgaatatc gggcgaccgg ccgcgtcccc gaccggctga cgccgcagcg
      721 cgcccaggcg ctggagcgga tcggcgaccg gcaggggctg gttcgcgagc tggcgctgat
      781 cgccggtgtc tccgacgcgg taatccgcgg actgtgcaag gccggcgcga tcgagccggt
      841 cgaagtctcg ctcgacacgc ccttcgaagc gcccgatccc gaccatgccc cacccgaact
      901 cacccccgcc caagccgccg ccgcggagcg gttcgtccgt gcggtccacg cccgcagctt
      961 ccagcctttc ctgctcgacg gcgtcaccgg ctcaggcaag accgaagtct atttcgaagg
     1021 cgtcgcggcc gccctgcgcg aaggccggca atgccttgtc ctcctccccg aaatcgcgct
     1081 caccgagccc ttcctccgcc gcttcaccgc acgcttcggc gtgctgccgg tcgcctggca
     1141 ttcggacctg cgccagtccc agcgccgccg tgcatggcgg gcgatcgcga gcggcgaggc
     1201 caaggtcgta gtcggcgccc gctcggcact cttccttccc tatcgcgatc tcggcctgat
     1261 cgttgtcgac gaagcgcacg aagcgagctt caagcaggaa gacggcgtcc agtatcacgc
     1321 tcgcgacacg gccgtgatgc gcggccggtt cgaggacatt cccgtcatcc tggcctcggc
     1381 gacgccggcg atcgagacgc gccatcaggt cgaactcggc cgctacgaag aagtgaagct
     1441 gccggcccgt ttcggcggcg cgcaattgcc cgagatcgcg gcgatcgacc tgcttgcgga
     1501 cccgccgccg cgcggccact ggcttgcgcc cactttggtc aaggcgatcg aagcgacgct
     1561 ggagcgcggc gaacaggcgc tgctgttcct caaccgccgc ggctatgcgc cgctcacgct
     1621 ctgccgtcat tgcgggcatc gcttccaatg ccccaattgc accgcctggc tggtcgagca
     1681 ccggctggtg caccggcttc aatgccacca ttgcgggctg atcgcgcgac cgcccgactt
     1741 ctgccccgaa tgcaaggcgg aagactcgct cgtcgcctgc ggcccgggcg tcgagcggat
     1801 cgccgacgag gtcgccgcgc ttttcccgga tgcgccccgc gcgatcgtca cttcggacac
     1861 gatctggtcc cccgccaagg ccgccgagtt cgtcgcgcgg atggaggccg gcgacatctc
     1921 gatcgtgatc ggcacccagc tcgtcaccaa aggctatcac ttcccgaacc tgaccttcgt
     1981 gggcgtggtc gacgccgatc tcggcctctc gggcggggac ctgcgcgccg ccgagcggac
     2041 gttccagcag atcgcgcaag tcgccggccg cgccggccgc ggttccaagc ccggccatgt
     2101 cttcatccag acgcacgacg caaaggcgcc cgtcatcgag gcgctggtga gcggcgatac
     2161 cgagagcttc tacgccgccg agaccgacgc ccgccgcgag gccggcgccc ctcctttcgg
     2221 gcggctggcg gcgatcatca tatcctcgga aaacgcccag gccgcgctgg agacggcgcg
     2281 cctgatcggc aagaccgcgc ccccgatcga gggcatgcac gtatatggtc ccgcccccgc
     2341 cccgctcgcc atgctccgcg gccgccaccg ccaccgcctg ctcgtccacg cgacccgttc
     2401 gctcgacgtg caagacgtgg tccgcaactg gctgggcagc ctggactggc cgaacagcgt
     2461 ccgcgttgcc gtggacgtgg acccctattc gttcctctaa agatcctccc cttcctctcc
     2521 tccctcgcct cgcctattca gcagcaattc gcgggagggc cctttatgtt tcgcgctttg
     2581 ttcactgccg cggcgctgct cgtcgcgact cccgcattgg ccgcgttcca gtcggaccgg
     2641 atcagcgtca cgaccgaagg cacagggccg gacgtggtgc tcgtgcacgg cctcgcttct
     2701 tccccgcggg tgtggaaagg cacggtcgag cgcgtgcccg gctatcgcta tcacctggtc
     2761 cagatcgccg gcatgggcgc gatgccaccg ggcggtaacg cccaaggcgc agtgatcgcg
     2821 ccggtcgccg aggaaatcgc acgctatatc cgggaggaaa agctgcgcca gccagcgctg
     2881 atcggtcatt cgatgggcgg cacgatcgcg ctgatgatcg ccgcgcgcca cccggacgag
     2941 gtcggcaagc tgatggtggt cgacatgcac ccgttcgtcg gcctgatgtt cggcggcccg
     3001 accgccaccg ccgacagcgt ccgcccgatc gcagacgcca tgcgcgcccg ctccgcgaag
     3061 gcgacgcccg aggagcggct gcaggaacgc gagcgcagca tcgtctcgat gatcaatacg
     3121 gaaagcgagc gtgcgggtcc gatcgaggat gccaaggcca gcaatccgga caccgtcgcc
     3181 aacgcctttt cggagttgat cgtcaccgat cttcgtccgg agctcggctc gatcaaggcc
     3241 accaccactg tcctttacat cacaccgaag ggcgcaccgt tcaccg
//
LOCUS       DASQVK010000138         2243 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_356603,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000138 DASQVK010000000
VERSION     DASQVK010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_356603"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..452)
                     /locus_tag="VE567_02930"
     CDS             complement(<1..452)
                     /locus_tag="VE567_02930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HYZ47828.1"
                     /translation="MLDREAAASLIRWWRDAGVDTLVEDAPRDWLARAAERPAATTRP
                     APAAETAAAPAGLPGTLDGLLAWLRDSADAPEARWGRARVLPSGNPQSELMILIDAPE
                     AGDAEAGRLLSGELGALFDRMLAAIKRDRGSVWLASFATIRPLGRVPQ"
     gene            581..2230
                     /locus_tag="VE567_02935"
     CDS             581..2230
                     /locus_tag="VE567_02935"
                     /EC_number="1.5.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006967778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004174 -
                     electron-transferring-flavoprotein dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein-ubiquinone
                     oxidoreductase"
                     /protein_id="HYZ47829.1"
                     /translation="MSEREAMPYDVVIVGAGPAGLGAAIRLKQLAEANGQELSVCVLE
                     KGSEVGAHILSGAVIDPRAIEELLPNWRDLDSPLTVPVTENHHWVLTEKKKYEFPHIL
                     MPPFMNNKGTYTGSLGNLCRWLAERAESLGVEIFPGFAAAEILFNDDGSVKGVATGDM
                     GVARDGTRKPDYQPGLELHAKYTFFAEGARGHLTKELKRIFELDTNCCPQIYGIGLKE
                     LWDIDPAKHVPGKVVHTQGWPLTDAWGGGFLYHQANGQVALGFVVALSYKNPHLSPFH
                     EFQRWKHHPAIREVLEGGKRVSYGARAINEGGWQSVPKLVFPGGALIGCSAGFVNVPR
                     IKGSHTAIKSGMLAAEAAFDAIRAERAGDELTAYPQALEKSWVAAELKKVRNAEPAIA
                     KFGGTVGTMIAGIDMWMRQLGIGLPFTFKHKPDHAEMLQANQCAKIDYPKPDGVISFD
                     RLSSVFLSNTNHEEDQPIHLTLKDPDVPVKHNLPLYDEPAQRYCPAGVYEVVGQDEAN
                     PRFVINAQNCVHCKTCDIKDPTQNINWVAPEGGGGPNYPNM"
BASE COUNT          420 a          750 c          719 g          354 t
ORIGIN      
        1 tcttgcggca cccgcccgag cgggcggatc gtggcgaacg acgccagcca gaccgacccg
       61 cggtcgcgct tgatcgccgc cagcatccgg tcgaacagcg ccccgagttc gcccgacaac
      121 agccggcccg cctcggcatc gccggcctcc ggcgcatcga tcaggatcat cagctccgat
      181 tgcgggttgc cggaaggcag cacgcgggca cggccccagc gggcttccgg cgcatcggca
      241 ctgtcgcgca accaggcaag caggccgtcg agcgtgcccg gcaggccagc cggggcagcg
      301 gcggtttcgg ctgccggcgc aggtcgcgta gttgcggcgg ggcgctccgc ggcgcgcgcg
      361 agccagtcgc gcggcgcgtc ctcgaccagc gtgtccacgc cggcgtcgcg ccaccagcgg
      421 atgaggctgg ccgcggcctc ccggtcgagc aaagcttgtg ccccttccat tagcgcgagt
      481 agagtccgga gttgacgggt tggtcaaccg attgcatcgc tggccgccac agaccgttgc
      541 ccggctgcga cgaagcgggg ccgtaagagg attaagcctg atgagcgaac gcgaagccat
      601 gccctacgac gtcgtgatcg tcggcgccgg tccggcgggg ctgggcgcag cgatccggct
      661 caaacaactc gccgaagcga acggccagga actgtcggtc tgcgtgctcg aaaagggctc
      721 ggaggtcggc gcccatatcc tctccggcgc agtcatcgat ccgcgggcga tcgaggagct
      781 gctgccgaac tggcgcgacc tcgacagccc gctgacggtg ccggtcaccg aaaaccatca
      841 ttgggtgctg accgagaaga agaaatacga attcccccac atcctgatgc cgcccttcat
      901 gaacaacaag gggacctata ccgggtccct cggcaatctc tgccgctggc ttgccgagcg
      961 tgccgagagt ttgggcgtcg agatcttccc cggcttcgcg gcggccgaga tcctgttcaa
     1021 cgacgacgga tcggtgaagg gcgtcgccac cggcgacatg ggcgtcgcgc gcgacggcac
     1081 ccgcaagccg gactatcagc ctgggctgga gctccacgca aaatacacat tcttcgcaga
     1141 aggcgcgcgc ggccatctga ccaaggagct gaagcgcatc ttcgagctcg acacgaactg
     1201 ctgcccgcaa atttatggca tcggcctcaa ggagctgtgg gacatcgatc cggccaagca
     1261 tgtgccgggc aaggtcgtgc acacccaggg ttggccgctc accgacgcct ggggcggcgg
     1321 gttcctctac caccaggcga acgggcaagt ggcgctcggc ttcgtcgtcg cgctctccta
     1381 caagaacccg cacctctcgc ccttccatga gttccagcgc tggaagcacc acccggccat
     1441 ccgcgaggtg cttgagggcg gcaagcgcgt ttcctatggc gcgcgcgcga tcaacgaagg
     1501 cggctggcag tcggtgccca aactggtctt ccccggcggc gcgctgatcg gctgctcggc
     1561 gggctttgtg aacgtgccta ggatcaaggg tagccacact gcgatcaagt ccggcatgct
     1621 ggcggccgaa gccgctttcg acgcgatccg cgccgagcgc gccggcgacg aactgaccgc
     1681 ttatccgcaa gcgctcgaaa agagctgggt cgccgccgag ctcaagaaag tccgcaacgc
     1741 ggagccggcc attgccaaat tcggcggcac tgtcggcacg atgatcgcgg gcatcgatat
     1801 gtggatgcgc cagctcggca tcggacttcc cttcactttc aagcacaagc ccgatcacgc
     1861 cgagatgctg caggcgaacc agtgcgcgaa gatcgattat ccaaagcccg acggcgtcat
     1921 cagcttcgac cggctttcct cggtgttcct gtcgaacacc aatcacgaag aggatcagcc
     1981 gatccacctg acgctgaaag accccgacgt cccggtcaag cacaacctgc cgctctatga
     2041 cgagcccgcg cagcgctatt gccctgccgg cgtttatgag gttgtgggac aggatgaggc
     2101 aaatccgcgt tttgtcatca acgcgcagaa ttgcgttcat tgcaaaacct gcgacatcaa
     2161 agacccgacc cagaatatca attgggttgc cccggagggc ggtggtggac cgaattaccc
     2221 gaacatgtag cagcctggcg ctc
//
LOCUS       DASQVK010000139         4830 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_262478,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000139 DASQVK010000000
VERSION     DASQVK010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4830
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262478"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..374
                     /locus_tag="VE567_02940"
     CDS             <1..374
                     /locus_tag="VE567_02940"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017182224.1"
                     /note="E3 component of alpha keto acid dehydrogenase
                     complexes LpdC; forms a homodimer; binds one molecule of
                     FAD monomer; catalyzes NAD+-dependent oxidation of
                     dihydrolipoyl cofactors that are covalently linked to the
                     E2 component; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HYZ47830.1"
                     /translation="RNAIPGCTYCHPQIASVGLTEAKAKEAGYTVRSGTFPFIGNGKA
                     IALGEAEGFVKTVFDAKTGELLGAHMIGAEVTELIQGYTIGKTGELTEAELMETVFPH
                     PTLSEMMHESVLAAYGRVLHI"
     gene            433..1035
                     /locus_tag="VE567_02945"
     CDS             433..1035
                     /locus_tag="VE567_02945"
                     /inference="COORDINATES: protein motif:HMM:NF025013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4142 domain-containing protein"
                     /protein_id="HYZ47831.1"
                     /translation="MQTSVTISTVAAIGFALAACGQASRNESSASDNMVTANEVGSVD
                     NNMATANGATAAPSAMTAAQFAATAAASDKYEIESSKLAESQASRTDVKDFASMLVKD
                     HSNSTAELKSIASKEHIALSPPALDPAMQGKIDALKAAKGAQFDTLYLTQQVPAHETA
                     LKMMQDYAATGDNEAVKGFATKTSTVVQKHLDRARELSKQ"
     gene            1138..2397
                     /locus_tag="VE567_02950"
     CDS             1138..2397
                     /locus_tag="VE567_02950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008069738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYZ47832.1"
                     /translation="MIRSLLLATVIVAAPAPAATVAVTAAKMVDVLAGRTIDNPVVVI
                     TDGRITSVSSGGAVPQGAKRIDLAGKTILPGLIDMHVHLTSLAEIGGYRSLRYTDSFW
                     QAVGVANAKKTLEAGFTTVRNVGSSNFDDVGLQQAIDGGWIAGPRIVPAAYAIGATGG
                     HCDDNALPPSFDKQQPSVINSPDEARAKVRWLHKYGAEVIKICATGGVFSLGDSVGAQ
                     QLSFEEMKAIADEAHMLGLKVAAHSHGADGIRDAIRAGIDTIEHASLADDEGIRLAVQ
                     KKTWFDMDIYNDDYILATGTANGTEQESLDKEKMIGRLQRETFRKAVRAGVPMLFGTD
                     AGVYPHGQNARQFAKQVEWGMTPMQAIQSATKSAAEALGRTADVGAIAVGRFGDIVAV
                     DGDPTQDVRVLEHPAVVIKGGEVVKAQ"
     gene            2567..3013
                     /locus_tag="VE567_02955"
     CDS             2567..3013
                     /locus_tag="VE567_02955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47833.1"
                     /translation="MKKLIVAAALAALPLSFALQTPAYAQASSYTPGSFWDVTGIKFK
                     EGGGEKYLDWLATNWKRQQEFAKSKGWIEDYMVVANAYPRTGEPDLWLMIKYKAVPDA
                     AEQVRRNAAFEQFLKMDPHQADVASGERGAIRTVQEMMMLQELKLK"
     gene            3190..3915
                     /gene="queC"
                     /locus_tag="VE567_02960"
     CDS             3190..3915
                     /gene="queC"
                     /locus_tag="VE567_02960"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011240871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HYZ47834.1"
                     /translation="MTSLQSEPALVLFSGGQDSATCLAWALANFARVETIGFDYGQRH
                     RVELDCRAALRDGMAGLWPGRLGEDHLLDLSLLGRISETALTRDAEIAFGADGLPNTF
                     VPGRNLVFFNLAAAIGYRRGIRHLVGGMCETDYSGYPDCRDDALKALQVALSLGLDRR
                     IAIHTPLMWRDKAETWALAEALGGAALVELIRAESHSCYQGERATLHEWGYGCGICPA
                     CELRARGWVDYRRTAATNCDKFV"
     gene            4124..4507
                     /locus_tag="VE567_02965"
     CDS             4124..4507
                     /locus_tag="VE567_02965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47835.1"
                     /translation="MSASYSIDVEPWGFLRFTLEGFFDPETFQRFARDREAAFAKLTC
                     APNAHLTLVDVTQCQLQSQEVAAAFQKLMSDPHTRSRRIAFVFGASPTRLQVRRIAAH
                     RDDVGLFNEETSAMAWLREPEARVA"
     gene            complement(4504..>4830)
                     /locus_tag="VE567_02970"
     CDS             complement(4504..>4830)
                     /locus_tag="VE567_02970"
                     /inference="COORDINATES: protein motif:HMM:NF012626.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase"
                     /protein_id="HYZ47836.1"
                     /translation="LLAALGRADLAAFRARLPRTVATPELRLPCPDARKTAVLAAVEA
                     SLGGAEVNRTDGLRVTWPEGWWLLRSSGTEPKLTARIEASDELGLERLRADLFARLSA
                     AGLETA"
BASE COUNT          901 a         1461 c         1652 g          816 t
ORIGIN      
        1 accgcaacgc gatcccgggc tgcacttact gccatccgca gatcgccagc gtcggactga
       61 ccgaggccaa ggccaaggaa gcgggatata ctgtcaggtc gggcactttc ccgttcatcg
      121 gcaacggcaa ggcgattgcg ctgggcgagg cggaaggatt tgtgaagacg gtgttcgacg
      181 cgaagaccgg cgagctgctg ggcgcacaca tgatcggtgc ggaagtcacc gagctgatcc
      241 aaggctacac gatcggcaag accggcgagc tgacggaagc cgagctgatg gagacggtgt
      301 tcccgcaccc gacgctttcc gagatgatgc acgaaagcgt gctcgccgcc tatgggcggg
      361 tgctgcatat ctagccgcag ggggaacatc gcaaccggcc cggcgttcgg cagccttcgg
      421 aggagagctg ccatgcagac gagcgttacc atctcgaccg ttgcggcgat cggctttgcc
      481 ctggcggcgt gcgggcaggc cagccgcaac gagagttcgg caagcgacaa tatggtcacg
      541 gcgaacgaag tcggctcggt cgacaacaat atggcgaccg ccaatggcgc gacggccgca
      601 ccctcggcca tgaccgccgc tcaattcgcc gctaccgcgg cggcgagcga caagtacgaa
      661 atcgagagtt ccaaacttgc ggagagccag gcgtcgcgca ccgatgtgaa ggactttgcc
      721 tcgatgctgg tgaaggacca ctccaactcg acggccgaat tgaagtcgat cgcgtcgaag
      781 gagcatatcg ctttgtcgcc gccggcgctg gatccagcca tgcaaggcaa gatcgacgca
      841 ctgaaggcgg ccaaaggcgc gcagttcgac acgctgtatc tgacgcagca ggtgccggcg
      901 catgaaaccg cgctgaagat gatgcaggat tatgccgcga ccggcgacaa tgaggcggtg
      961 aaggggttcg cgaccaagac ctcgacagtg gtgcagaagc atctcgaccg cgcgcgggag
     1021 ctgtcgaagc agtagctggc ccgggacagc cgaaagcctc aactcccttc ctcagggagg
     1081 gggcttgctg ctttgcaatc aggggcttag gccttccgga ttcttccggg agggcccatg
     1141 atccgttcgc ttctgcttgc caccgttatt gtcgccgcgc cggctccggc ggcgacggtt
     1201 gccgttactg cggccaaaat ggtcgatgtg ctcgccgggc gcacgatcga caatcctgtc
     1261 gtcgtgatca ccgatgggcg catcacctcg gtgtcgagcg gcggggccgt gccgcagggc
     1321 gcgaaacgga tcgacctggc cggcaagacg atcctgcctg gcctgatcga catgcatgtg
     1381 cacctgacca gcctggccga gatcggcggc taccgttcgc tgcgctacac cgacagcttc
     1441 tggcaggccg tgggcgtcgc caatgcgaaa aagacgctgg aggcgggctt cacgaccgta
     1501 cgcaacgtcg gctcgtcgaa tttcgacgat gtcgggctcc agcaggcgat cgacgggggc
     1561 tggatcgcag ggccgcgcat cgtgccggca gcctatgcca tcggtgcgac cggcggccat
     1621 tgcgacgata atgcgctgcc gccttccttt gacaagcagc agccgtccgt catcaactcg
     1681 cccgacgaag cgcgcgcgaa agtgcgctgg ctgcacaaat atggggccga agtgatcaag
     1741 atctgcgcga ccggcggcgt cttctcgctg ggcgacagcg ttggcgcgca gcagctcagt
     1801 ttcgaggaaa tgaaagcgat cgcggacgaa gcgcacatgc tgggcctgaa agtcgcggcg
     1861 cactcccacg gggcggacgg cattcgtgac gccattcgcg ccgggatcga cacgatcgag
     1921 cacgcgagcc tggccgacga cgaggggatc aggcttgctg tgcagaagaa gacctggttc
     1981 gacatggata tatacaatga cgactatatc ctggcgaccg gtacggcgaa cggcaccgag
     2041 caggagagcc tcgacaagga aaagatgatc ggccggctgc agcgcgagac ctttcgcaag
     2101 gcagtccgcg ccggcgtgcc gatgctcttc ggcaccgatg caggcgtcta tccgcacggg
     2161 cagaatgccc gacagttcgc caagcaagtc gaatggggca tgacgccgat gcaggcgatc
     2221 cagtcggcga ccaagagcgc ggcggaagcc ctgggccgga ccgcggatgt gggcgcaatc
     2281 gcggtcggcc gcttcggcga cattgtcgca gtggacggcg acccgaccca ggacgtgcgc
     2341 gtgctggagc acccggccgt cgtcatcaag ggcggcgagg tcgtgaaggc gcagtgagcg
     2401 cggcgctcag agcggccctg gcgcttgcca acggatggcg ttcgtgatca tctgaccgtc
     2461 gttcacgccg ccgcgaaagc atcaagaggt cgcaggcgac gacgggggcc agtcgcgtat
     2521 gccggcaggc gtggggcttg ccggacgctc tcggggaaac gatgccatga agaaactgat
     2581 cgttgccgcg gcgcttgccg cgcttccttt gtcatttgcg ctccaaacgc ctgcctacgc
     2641 ccaggcaagc agctatacgc cgggctcttt ctgggacgtg acgggcatca agttcaagga
     2701 gggcgggggc gagaaatatc tcgattggct cgccaccaac tggaagaggc agcaggagtt
     2761 cgccaagtcc aagggctgga tcgaagacta tatggtggtc gccaacgcct atccgcgcac
     2821 cggcgagccg gatctttggc ttatgatcaa gtataaggcc gtgccggatg ccgccgagca
     2881 ggtccggcgc aatgccgctt tcgaacagtt cctgaagatg gacccgcacc aggctgacgt
     2941 ggcgagcggc gaacgaggtg cgattcggac cgtccaggaa atgatgatgc tgcaggaatt
     3001 gaagctgaaa tgaggggatg atctggcgag aggggctggc aattgcttgc cggccgctct
     3061 ccgccagctt ccttgttccc aaaacgggca tgcgtcatgc cgggcttgac ccggcatcca
     3121 ccttctcttc acggaagctc ataggaagct aggcctcgga tcacatccgg ggtgacgagg
     3181 agaagaagag tgacctccct gcaatccgaa cccgcgctcg tcctgttctc cggcgggcag
     3241 gatagcgcca catgcctcgc ctgggcgctc gccaatttcg cgcgggtgga gacgatcgga
     3301 ttcgattacg ggcagcggca tcgagtggag ctcgattgcc gcgcggcgct gcgggacggg
     3361 atggcagggc tatggccggg aaggctgggc gaggatcacc tgctcgatct gtcgctgctg
     3421 gggcggatca gcgagacggc gctgacgcgc gatgcagaga tcgcgttcgg tgccgatggg
     3481 ttgccgaaca ccttcgttcc gggtcggaat ctggtgttct tcaacctggc cgcggcgatc
     3541 ggctatcggc gcgggattcg ccatctggtc ggcggcatgt gcgagaccga ttattccggc
     3601 tatcccgatt gccgtgacga tgcgcttaag gcgctgcagg tggcgctgag cctgggcctc
     3661 gatcgacgga tcgcgatcca cacgccactg atgtggcgcg acaaggcgga gacctgggcg
     3721 cttgccgagg cgctgggcgg cgcggcgctg gtcgagctga tccgcgcgga gagccatagt
     3781 tgctatcagg gcgagcgcgc gaccttgcac gaatggggct atggctgcgg aatctgcccg
     3841 gcctgcgaac tcagggctcg gggctgggtc gattatcgcc ggaccgctgc gacaaattgc
     3901 gacaaattcg tgtgacgccc gacataggct tgcgacaagt ggccgcgata aactggcttc
     3961 gacagcgcgg ttccccctct ccagctgtcg aaccaaggcg gggccacccc tccctgcctt
     4021 caggacgacc ccaaagtccc gagccccgct ccctcacccc aggagcgggg ctcttcctat
     4081 tgtcgccaac agtctgttaa gctcttcgcg gcattggcgg cttatgtcag cgtcgtactc
     4141 gatcgatgtc gagccttggg gctttcttcg cttcacgctg gaaggttttt tcgatccgga
     4201 gacttttcag cgcttcgcca gggaccgtga ggcggccttt gcgaagctga cttgtgcgcc
     4261 caacgcgcat ctgacgctgg tcgacgtgac gcaatgccag cttcagtcgc aggaggttgc
     4321 ggcagctttt cagaagctca tgtccgatcc gcacacgcgg agccggcgaa tcgccttcgt
     4381 gttcggcgca tcgccgacgc ggctccaggt gcggcggatt gccgcgcacc gcgacgatgt
     4441 cggcctgttc aatgaggaaa cttcggcgat ggcatggctg cgcgagcctg aggcgagagt
     4501 cgcctaagcg gtctccaggc cggcggcgga aagcctggcg aacaggtcgg cgcgcagccg
     4561 ttcgaggcca agctcatctg acgcttcgat gcgggcggtg agcttaggtt cggttcccga
     4621 actgcgcagc aaccaccaac cttccggcca ggtgacgcgc aagccgtcgg tgcgattgac
     4681 ctcggcgccg ccgaggctcg cttcgacggc ggccaggacc gcggttttgc gtgcatcagg
     4741 gcagggcagg cggagttcgg gcgtggcgac ggtgcgtggc agccgggcac ggaaggcggc
     4801 cagatcggcg cggccgagcg cggcgagcag
//
LOCUS       DASQVK010000140         2169 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_420508,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000140 DASQVK010000000
VERSION     DASQVK010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2169
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_420508"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..281
                     /locus_tag="VE567_02975"
     CDS             <1..281
                     /locus_tag="VE567_02975"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HYZ47837.1"
                     /translation="KKPQGSTGLPRGKVLMMIGDQDPIVPAEDRDAFRAEMDEAQADW
                     QLHIFGGACHSFTDPAVDALNYPGFRHDAKANARAWALTHAMLQESLH"
     gene            304..816
                     /locus_tag="VE567_02980"
     CDS             304..816
                     /locus_tag="VE567_02980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47838.1"
                     /translation="MTAPVEIVVNDKMQQGYRYWLTAPEGRDFHPGFRPELTPAEMLE
                     LGVFGGKYMTDCRGEFPESWFARAKLASGPRDPSLNYFGVNASQPLSVWREKGWIHPD
                     DPRGWFQWYCRYYRGRRMPGEDERQIGRCRAFRRHLAQVRLHCAPGDPFCRPRQRQAL
                     LQWAYDSRAI"
     gene            complement(868..>2169)
                     /locus_tag="VE567_02985"
     CDS             complement(868..>2169)
                     /locus_tag="VE567_02985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018580 - nitronate monooxygenase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HYZ47839.1"
                     /translation="AWAAAGGIGTISAVNADSYDPTGRIVPQVYESRTRRERHEELIH
                     FAIDGAVEQVKRAWELASGQGAININVLWEMGGAQRILHGVLERTRGLVSGVTCGAGM
                     PYKLSEISASYGVNYLPIISSARAFRALWKRAYHKAAEWLAAVVYEDPWLAGGHNGLS
                     NAEDPLAPEDPYPRVKALRETMREGGIPDNVPIVMAGGVWYLRDWNHWIDNPELGAIA
                     FQFGTRPLLTRESPIPDQWKQALMNLEPGDVLLHRFSPTGFYSSAVRNGFLRNLEARS
                     HRQIPFSGEMAGDHTHQLDVGVKGKNFWVTRGDLMRAREWYGLGFTEALKTPDNTLVF
                     VTPAEKAVIRKDQADCMGCLSQCAFSAWSDNEVNSTGRLAAPRSFCIQKTLQDIAHGG
                     PVDQNLMFAGHGAYRFKQDPFYSNGFVPTVKQLVDRILTGD"
BASE COUNT          368 a          699 c          718 g          384 t
ORIGIN      
        1 tcaagaaacc gcaggggtcg accggcctgc cacgaggcaa ggtgctgatg atgatcggcg
       61 accaggaccc gatcgttccg gcggaggatc gcgatgcgtt ccgggcggag atggacgagg
      121 cgcaggcgga ttggcagctc catatcttcg gcggcgcgtg ccacagcttc accgatcccg
      181 ccgtcgacgc gctgaactat ccgggctttc gccacgacgc caaggcaaat gcccgcgcct
      241 gggcgctgac ccacgcgatg ctgcaggaga gcctgcattg actttcagag ggaaggttgc
      301 ggcttgaccg ccccagtcga gatcgtcgtc aacgacaaga tgcagcaggg ctatcgctat
      361 tggctgacgg ctcctgaggg gcgggatttc catcccggtt tccggcccga gctgactccg
      421 gccgagatgc ttgaactcgg cgtgttcggg ggcaagtaca tgaccgactg ccgtggcgaa
      481 tttccggaga gctggttcgc ccgcgcgaag ctcgcgagcg ggccgcgcga tccgtcgctc
      541 aactatttcg gcgtgaacgc cagccagccg ctatcggtct ggagagagaa aggctggatc
      601 cacccggacg atccgcgcgg ctggttccaa tggtattgcc gctattatcg cggccgccgg
      661 atgcctggcg aggacgagcg gcagatcggg cgctgtcggg cgttccgccg gcacctcgcg
      721 caggtccggc tgcactgcgc gcctggcgat cctttctgcc gtccccgcca acgccaggca
      781 ctgctgcaat gggcctatga cagccgggcg atctgatttt cgacgctaac cctaaacggc
      841 gccgctcgaa cagatcggac ctatgcgtca atcgcccgtg aggattcggt ccaccaattg
      901 cttcacggtg ggcacgaagc cgttcgaata gaacgggtcc tgcttgaagc ggtaggcgcc
      961 gtggccggcg aacatcaggt tctggtcgac agggccgcca tgggcgatgt cttgcagcgt
     1021 cttctggatg cagaagctgc gcggagcggc gaggcggcca gtggagttca cttcgttgtc
     1081 cgaccaggcc gagaaagcgc attggctgag gcagcccatg caatccgcct gatccttgcg
     1141 gatcacggcc ttttcggcag gcgtgacgaa caccagcgtg ttgtccggcg tcttcagcgc
     1201 ctcggtaaag cccagcccat accattcgcg cgcgcgcatc aggtcgccgc gcgtgaccca
     1261 gaaattcttg cccttcaccc cgacatcgag ctggtgcgtg tgatcgcccg ccatttcgcc
     1321 cgagaacgga atctggcggt gcgaccgcgc ttccagattg cgcagaaagc cgttgcgcac
     1381 tgccgaggaa tagaagcccg tgggcgagaa gcggtggagc agcacgtcgc ccggctcgag
     1441 gttcatcagc gcctgcttcc actgatccgg gatcgggctt tcgcgggtga gcagcgggcg
     1501 ggtgccgaac tggaaggcga tcgcgccgag ctcgggattg tcgatccagt ggttccaatc
     1561 cctgagatac cagacgccgc cggccatcac gatcggcaca ttgtccggaa tgccgccttc
     1621 gcgcatcgtt tcgcgcagcg ccttgacgcg cggataggga tcttcggggg cgagcgggtc
     1681 ttcggcgttc gacaggccgt tatgcccgcc ggcgagccac gggtcctcgt aaaccactgc
     1741 cgccaaccat tccgcggcct tgtgataggc gcgtttccaa agcgcgcgga aagcgcgcgc
     1801 cgagctgatg atcggcagat agttgacgcc gtaggaggcg ctgatctcgg acagcttgta
     1861 gggcatgccc gccccgcacg tgacgccgga gacgagcccg cgcgtccgct ccagcacgcc
     1921 gtgcaggatg cgctgggcgc cacccatttc ccacagcacg ttgatgttga tggcgccctg
     1981 gccgctggcg agctcccaag cgcgcttgac ctgctcgacg gcgccgtcga tcgcaaaatg
     2041 gatcagctct tcgtgccgct cgcgccgggt gcggctttca tatacctgcg ggacgatcct
     2101 gccggtcgga tcgtagctgt cggcattgac cgcggagatc gtgccgatgc ccccggccgc
     2161 cgcccaggc
//
LOCUS       DASQVK010000141         3891 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_294082,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000141 DASQVK010000000
VERSION     DASQVK010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3891)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3891
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294082"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..1103
                     /locus_tag="VE567_02990"
     CDS             105..1103
                     /locus_tag="VE567_02990"
                     /inference="COORDINATES: protein motif:HMM:NF015056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetamidase/formamidase family protein"
                     /protein_id="HYZ47840.1"
                     /translation="MTIEPWLRTSIMAKRGVAKGEAGKRHELTIAAQGDFHYVYGPYA
                     KPVLTIDPGDVVAVETEDAFGGVITSEQDSPTAKLKFPFLNPQCGPISVNGIEKGDCL
                     AVHIQAVETRGAQPAGKTCIIPEFGGLVGTAATALLNPPLPERVRTMHVDKSGVRWSD
                     RITLPYEPFIGTIGVSPEIEAISSLQPDYHGGNMDLPDVAPGAILYFPVHVKGGLLYV
                     GDCHAAQGDGELSGVAIEQRATVTMQIDVVKGWSFAWPRLETEKFLMTIGSARPLEDA
                     ARIAYRELVRWMSAEYDFDEIDAYMLLSQAGRIRLGNMVDPKYTMGASILKKYLVS"
     gene            1133..2356
                     /locus_tag="VE567_02995"
     CDS             1133..2356
                     /locus_tag="VE567_02995"
                     /inference="COORDINATES: protein motif:HMM:NF024825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYZ47841.1"
                     /translation="MTVDRRKFLQSTAAAAATGMFCFPALAEDAISVASIHDLSGGLD
                     IYGKPMVDALTLAVEEANAAGGLLGKQVKLINYDTQSNMQLYTQFAQQAALKDKVAVV
                     HGGITSASREVVRPVLDRFKTLYFYNTQYEGGVCDRNQFDTGVTPAQTVEKLVPYAMK
                     KWGKKVYVVAADYNYGQITSQWVKKYVQENGGEVPSIDFFPLDVTNFGPTISKIQAAK
                     PDFVWSALVGGAHISFYRQWAAAGMRKSIPMASTTFAVGNEHIVLSPDECNGMLICYN
                     YFQDLKNPVNEKFVAAFQKRFGADYPNITELAMGTYQGFRLWAEAVKKAGSIDRLKVI
                     EALETGISIDAPSGKVTIDPPTHHCVLDVHIAEVADKKLKVLEDFAQQKPADTAAVCD
                     LIKNPNDKQQYVIKI"
     gene            2398..3264
                     /locus_tag="VE567_03000"
     CDS             2398..3264
                     /locus_tag="VE567_03000"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47842.1"
                     /translation="MDLVALLAIQVLYAIASLALISVGLAIIFGMMRVINLAHGEFLM
                     LGGYAAIVATSHGISIWLSMLVVAPIVVGIIGVIVERTIIRFLYGRMIDTMLATWGLS
                     LFLVGLTTAIFGNTTVGISAPLGSFEIGAYRISTYTLFVIAVAIAVFGAIFATMRWTR
                     LGLIARGTMQNANMAAALGVNPPRVYAVTFGIGAALSGLAGAVLAPVSGVFPTIGVAY
                     VAKSFITVIGGGAAILSGTVSASSLFGTINQLATFATTPVFGEVALLAAAIVLIRLLP
                     QGITGRFFRRGL"
     gene            3261..>3891
                     /locus_tag="VE567_03005"
     CDS             3261..>3891
                     /locus_tag="VE567_03005"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47843.1"
                     /translation="MNGRALNLFGLALVGAIGLAFMILAPRLFELDVVLELTVYMIMA
                     ILALSLALIWGYGGILCFGQSAFFGLGAYTYAIAMFNIGESTIPLLLAIVLPAAFAAL
                     LGYFMFYGRISDVYLGVITLTVTLILFNSINSTAGPEFRIGAARLGGFNGIPGIPPLN
                     LPGNKAAPIDLEGMFYLATASLLLTYFGLRLLLASRFGRIIVGIRENERR"
BASE COUNT          717 a         1215 c         1194 g          765 t
ORIGIN      
        1 cgatcgaggc cagtggggtt ggaagctgaa ctaatagagg ccgaggcaaa cacaaatgac
       61 actggcgtgt gatttgcatt gcaccaattc atgaggatgt cgcgatgacc attgagccct
      121 ggctgagaac ttcgatcatg gcaaagcgcg gcgtcgccaa gggtgaggca gggaagcgcc
      181 acgaacttac catcgcggca caaggcgatt ttcactacgt ctatgggccc tatgcaaagc
      241 ctgtcctcac gatcgatcct ggcgatgtcg tcgcggtgga gacggaagat gcgtttggcg
      301 gcgtcatcac cagcgagcag gacagcccga ctgcgaagtt gaagttccct tttcttaacc
      361 cgcaatgcgg gccgatcagc gtgaatggca tcgagaaggg cgattgcctg gccgttcata
      421 tccaggccgt ggagacgcgc ggcgcgcagc ctgccggcaa aacctgcatc attccggaat
      481 tcggcggcct ggtcgggacg gcggcaaccg cgctgctcaa tccgccgctc ccggagcgcg
      541 tgcgaacgat gcatgtcgac aaaagcggcg tgcggtggag tgacaggatc acgctgccct
      601 atgagccgtt tatcggcacg ataggagtct cgcccgagat cgaggcgatc tcctcgctgc
      661 agccggacta tcacggcggc aacatggacc tgcccgacgt ggcgccgggc gctatccttt
      721 attttcccgt gcatgtgaag ggcggactgc tctatgtcgg cgattgccac gccgcccagg
      781 gcgacggcga attgtcgggc gtggcgatcg aacagcgagc taccgtcacc atgcaaatcg
      841 acgtcgtcaa gggctggagc tttgcctggc cgcggctcga gaccgagaag ttcctgatga
      901 cgatcggtag cgcgaggccg ctcgaggatg ctgcgcgcat cgcctatcgc gaactggtgc
      961 gatggatgag cgccgagtac gacttcgacg agatcgacgc ctacatgctg ctcagccagg
     1021 ccggccgcat caggctcggc aacatggtcg atccgaaata caccatgggc gcgtcgatcc
     1081 tgaagaaata cctggtctca tgaaatattg gcaacacggg agggctgtgg caatgacggt
     1141 cgatcgcaga aagttcctac agagtacggc ggccgccgcc gctaccggca tgttttgctt
     1201 tcccgcgctc gccgaagacg cgatcagcgt ggcgagcatc catgatctct ccggcggcct
     1261 cgacatctat ggcaagccga tggtcgatgc gctgacgctt gcggtcgagg aagccaatgc
     1321 cgccggcggc ctgctgggga agcaggtcaa attgatcaac tacgataccc agtcgaacat
     1381 gcagctctac acgcagttcg cccagcaggc ggcgctgaag gacaaggtcg cggtggtcca
     1441 tgggggcatc acctcggcgt cgcgcgaggt ggttcgcccg gtgctcgacc gcttcaaaac
     1501 actctatttc tacaacaccc agtatgaagg cggcgtctgc gaccgcaacc agttcgacac
     1561 cggcgtgacg cccgcgcaga cggtggaaaa gctggtgccc tatgcgatga aaaaatgggg
     1621 caaaaaggtt tacgtagtgg cggccgacta caattacggc cagatcacct cgcaatgggt
     1681 gaagaaatac gtgcaggaga atggcggcga ggtcccctcg atcgacttct tcccgctcga
     1741 tgtcaccaat ttcggtccga ccatctcaaa aatccaggcg gcgaagccgg atttcgtctg
     1801 gtcggcgctg gtcggcggcg cgcatatctc cttctaccgc cagtgggcgg ccgccggcat
     1861 gcgcaagagc atcccgatgg cctcgaccac gtttgcggtc ggtaacgagc acatcgtgct
     1921 ctcgccggac gaatgcaacg gtatgttgat ttgctacaat tacttccagg acctgaagaa
     1981 cccggtcaac gagaagttcg tggcggcctt ccagaagcgc ttcggcgccg actatccgaa
     2041 catcaccgag ctcgcgatgg gaacctacca gggcttccgg ctgtgggcgg aggcggtgaa
     2101 gaaggcgggc agcatcgacc gcctgaaggt gatcgaggcg ctggagaccg gcatcagcat
     2161 cgatgcgcca tccggcaagg tcacgatcga cccgccaacg catcattgcg tgctcgacgt
     2221 tcacatcgcc gaagtcgccg acaagaaact gaaggtgctt gaggatttcg cgcagcagaa
     2281 gccggcggac acggccgccg tctgcgacct gatcaagaat ccgaacgaca agcagcaata
     2341 tgtgatcaag atctgagggg gcagtctccc tccgggtttt gcttgggaaa ggtgcacgtg
     2401 gatctcgttg ctctcctggc aatccaggtg ctttacgcca ttgccagcct ggcgctgatc
     2461 agcgtcggcc tggcgatcat cttcggcatg atgcgcgtca tcaatctcgc ccatggcgaa
     2521 ttcctgatgc tgggcggtta tgccgcgatc gtcgccacca gccacggcat cagcatctgg
     2581 ctgtcgatgc tggtggtggc gccgatcgtg gtcggcatca ttggcgtcat cgttgagcgt
     2641 accatcatcc gattccttta cggccgcatg atcgacacca tgctcgcgac ctggggcttg
     2701 agcctgttcc tggtcggact gacgacggcg atcttcggca acactacggt cggcatctcc
     2761 gcgccgctgg gcagctttga gattggcgcc taccgcatca gcacctacac gctgttcgtg
     2821 atcgcggtcg cgatcgccgt gttcggcgcg atcttcgcca ccatgcgctg gacccggctt
     2881 ggcctgatag cgcgcggcac catgcaaaat gccaatatgg ccgcagcgct tggcgtcaat
     2941 ccgccgcgcg tctatgccgt caccttcggc atcggcgccg cgctgtccgg acttgccggg
     3001 gcggtgctgg cgccggtgtc gggcgtgttc ccgaccatcg gcgttgccta tgtcgcaaaa
     3061 tccttcatca cggtgatcgg cggcggcgcc gccatcttga gcggcacggt ctcggcgtcg
     3121 tcgctgttcg gcaccattaa ccagctcgcg accttcgcca ccacgccggt gttcggcgag
     3181 gtggcgctgc tcgccgccgc catcgtcctg atccgcctgc tgccgcaagg catcaccggc
     3241 cgcttcttcc ggaggggact gtgaacgggc gcgcgctcaa tctcttcggc ctggcgctgg
     3301 tcggcgcgat cggcctcgcc ttcatgatcc tcgccccgcg cctgttcgag ctcgatgtgg
     3361 tgctcgaact cacggtctac atgatcatgg cgattctggc gctcagcctg gcgctgatct
     3421 ggggctatgg cggcatcctc tgcttcggcc agtccgcctt cttcggtctc ggcgcctaca
     3481 cctatgccat tgccatgttc aacatcggcg agagcaccat tccattgctg ctcgctatcg
     3541 tcctgccggc cgcgtttgcg gcgcttctcg gctatttcat gttctacggc cggatcagcg
     3601 acgtctatct cggcgtcatc acgctgacgg tgacgctgat cctgttcaac tcgatcaatt
     3661 ccaccgccgg tcccgaattc cgcatcggcg ccgcgcggct tggtggcttc aacggcattc
     3721 caggcatccc gccgctcaat ctgcccggga acaaggcagc gccgatcgat ctcgagggca
     3781 tgttctatct cgccaccgcc tcgctgcttc tgacctattt cggcctgcgg ctgctgctcg
     3841 ccagccggtt cggccgcatc atcgtcggca tccgcgagaa cgaacggcgc g
//
LOCUS       DASQVK010000142         2786 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_452343,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000142 DASQVK010000000
VERSION     DASQVK010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2786)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2786)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2786
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_452343"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..201
                     /locus_tag="VE567_03010"
     CDS             <1..201
                     /locus_tag="VE567_03010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003047175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYZ47844.1"
                     /translation="QGEVQGIASMSLGIGSIVAPLLLTRVMAEFIRADAPIYMPGAAF
                     LVSALFGLAALFLLRRLPRVAA"
     gene            complement(198..1367)
                     /locus_tag="VE567_03015"
     CDS             complement(198..1367)
                     /locus_tag="VE567_03015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase-like
                     UDP-glucuronosyltransferase"
                     /protein_id="HYZ47845.1"
                     /translation="MARFLLGWELGANRGHLVRLADIARRLAAEGHDVAIAAQRLSRA
                     FDFPPGLTLWQAPVWPRLIANVGGLAGPHPNTMGDILVRVGLDAEETLPALIGGWDAI
                     LAAVRPDAVAADFAPALLCAARGRVPSLLVGLGFDTIPHTLPAFPSLTGQPAAYPEAE
                     TLARVNRGLAGAGRGPIERLPELFAADATLAGTFAELDPYARWRTEPPVAPSVSHPVG
                     EAGEGEEIFLYADAALLRTAALWEGLVRSTLPVRVFAQGASDGQNTELAKLGFAVERR
                     PIPFAEIARRSRITMSYGGLGFVSSSLAAGVPTVVAHYDLEKRLSGEAVTRMQLGGHV
                     YAGAIQPEAFATSLRQLYQNESFQRRARELAPGFRARLAPTQEELAAKLLSEMAG"
     gene            complement(1374..2132)
                     /locus_tag="VE567_03020"
     CDS             complement(1374..2132)
                     /locus_tag="VE567_03020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HYZ47846.1"
                     /translation="MASERIWTAGLVIIGDEILSGRTQDRNVAQIALWLNLQGIRLAE
                     VRVVGDTVPAIVEAVNTLRARHDYLFTTGGIGPTHDDITVDAMAEALGVPVVVHPKAR
                     AVLEHYYESRGGITEARLRMARVPEGAERIENRMSGAPGIRWGNIFIMAGVPHITAMM
                     LDALSGTLEGGRPLLSETIGCWVAESEVADLLRTTEKAHPGCQIGSYPFFREGRVGAN
                     FVIRSTEGPVLAACIADLRARLIEAGREPVDGGI"
     gene            2192..>2786
                     /gene="map"
                     /locus_tag="VE567_03025"
     CDS             2192..>2786
                     /gene="map"
                     /locus_tag="VE567_03025"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HYZ47847.1"
                     /translation="MTTYVAADDTNLTRTNAIKLHGPDGFEGMRRAGRLAAEILDAIV
                     PHMVPGVETQAIDDMIRAHMLREGAVPATLGYRGYTHSCCISVNHVVCHGIPSERTLK
                     DGDIVNVDVTPLVDGWHGDSSRMYLIGDVPIKARRLVDVTYEAMMLGIEQARPGNRLG
                     DIGHAIQSFAEKHRYGVVRDFCGHGVGRLFHDAPEVVH"
BASE COUNT          459 a          988 c          919 g          420 t
ORIGIN      
        1 caaggcgaag tgcagggaat tgccagtatg tcattgggga tcgggtcgat cgtggcgccg
       61 ctcctcctca cgcgggtgat ggccgagttc atccgcgccg acgcgccaat ttatatgccc
      121 ggcgcggcgt tcctcgtctc cgcgctattc ggccttgccg ccctgttcct gctgaggcgc
      181 ttaccccgag tggcggccta gccggccatt tccgaaagca gctttgccgc cagttcctcc
      241 tgggtcgggg ccaggcgggc gcgaaagccg ggggcgagct cgcgcgcgcg gcgctggaag
      301 ctctcattct ggtagagctg gcgcagcgag gtcgcgaacg cctcgggctg gatcgcgccg
      361 gcatagacat ggccgcccag ctgcatccgc gtcaccgcct cgccgctgag ccgcttttcc
      421 agatcgtaat gcgccaccac cgtcggcacg cccgcggcaa gcgagctgct gacgaaaccg
      481 agcccgccat aggacatcgt gatgcgggag cggcgggcga tctccgcgaa cgggatcggg
      541 cggcgctcga ccgcgaaccc taatttggcg agctccgtat tctgcccgtc cgacgcgccc
      601 tgggcaaaga cgcgcacggg cagggtcgag cgcaccagcc cttcccaaag cgccgcggtc
      661 cggagcagcg ccgcatcggc atagaggaag atttcctccc cctcccccgc ctcgccgacc
      721 ggatgcgaga ccgagggcgc caccggcggc tcagtgcgcc agcgggcata ggggtcaagc
      781 tcggcaaagg tgccggcgag cgtcgcgtcg gcggcgaaca gctcgggcag cctttcgatc
      841 ggcccgcgcc ctgccccggc gagcccgcga ttgacccgcg ccagcgtctc cgcctcggga
      901 taggcggcag gctggcccgt gaggctcgga aaggcgggga gcgtgtgcgg aatggtgtca
      961 aagcccaggc cgacgagcaa gctcggcacg cgcccgcgcg cggcgcacag cagggccggc
     1021 gcgaagtccg ccgcgacggc atccggccgc acggcggcaa ggatcgcgtc ccagccgccg
     1081 atcagcgccg gcagcgtctc ttctgcatcg agcccgacgc ggacgagaat gtcgcccatc
     1141 gtgttcggat ggggccccgc cagcccgccg acattggcga tcagccgcgg ccagaccggc
     1201 gcctgccaca gcgtcagacc gggcggaaag tcgaacgcgc ggctgagccg ctgcgccgca
     1261 atcgcgacgt catgcccctc agccgccagt cggcgcgcga tatcggcgag gcggaccaga
     1321 tggccgcgat tcgcccccaa ttcccagcca agcagaaaac gcgccatgaa gtgtcagatg
     1381 ccgccgtcga caggttcgcg gcccgcctcg atcagccgcg cacgcaggtc tgcgatgcag
     1441 gccgcgagta ccggcccctc ggtcgagcga atgacgaaat tggcgcccac ccgcccttcg
     1501 cggaaaaagg gatagctgcc gatctggcag cccggatgcg ccttctcggt cgtgcgcagc
     1561 aggtcggcga cttcgctttc cgcgacccag cagccgatcg tctccgaaag cagcggccgc
     1621 ccgccctcca gcgtgccgga cagtgcatcc agcatcatcg cggtgatatg cggcacgccc
     1681 gccatgatga agatattgcc ccagcgaatc cccggcgccc cggacatgcg gttctcgatc
     1741 cgctcggccc cttcaggcac gcgtgccatc cgcagccgcg cctcggtgat gccgccgcgg
     1801 ctttcgtaat aatgctccag cacggcccgg gccttgggat gcaccacgac cggcacgccc
     1861 agcgcctcgg ccatcgcatc gacggtgata tcgtcatgcg tcggcccgat cccgccggtg
     1921 gtgaagagat agtcgtggcg ggcccgaagc gtattcactg cctcgacgat agcgggaacc
     1981 gtgtcgccga ccacccgcac ttcggcgagg cgaatgccct gcaggttcag ccacagcgcg
     2041 atctgcgcga cgttccggtc ctgcgtccgc ccggacagga tctcgtcgcc gatgatcacc
     2101 agccccgccg tccaaatccg ctcgctcgcc atgccccgcc cgatgatcca atgacgttgg
     2161 attggcaacc attcccgcct atatcgcggg gatgaccact tatgttgccg ccgacgacac
     2221 caacctgacc cgcaccaacg cgatcaagct gcacgggccc gacgggttcg agggcatgcg
     2281 ccgcgcgggg cggttggcgg ccgagatcct ggacgcgatc gtgccgcata tggtgccggg
     2341 cgtcgaaacg caggcgatcg acgacatgat ccgcgcgcat atgctgcgcg aaggtgcggt
     2401 gccggcgacg ctcggctatc gcggctacac tcatagctgc tgcatttcgg tcaaccatgt
     2461 cgtctgccac ggcattcctt ccgagcggac gctgaaggac ggcgatatcg tcaacgtgga
     2521 cgtgacgccg ctcgtcgacg gctggcacgg cgattcgtcc cgcatgtacc tgatcggcga
     2581 cgtgccgatc aaagcgcggc ggctggtcga cgtcacttat gaagcaatga tgctcggcat
     2641 cgagcaggcc cggcccggca accggctggg cgatatcggc catgcgatcc agtcgttcgc
     2701 cgaaaagcac cgctatggcg tggtccgcga tttctgcggc cacggggtcg gccggctgtt
     2761 ccacgacgcg ccggaagtgg tccatg
//
LOCUS       DASQVK010000143         8427 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_420695,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000143 DASQVK010000000
VERSION     DASQVK010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 8427)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8427)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8427
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_420695"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1509)
                     /locus_tag="VE567_03030"
     CDS             complement(<1..1509)
                     /locus_tag="VE567_03030"
                     /inference="COORDINATES: protein motif:HMM:TIGR00830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose PTS transporter subunit IIA"
                     /protein_id="HYZ47848.1"
                     /translation="MTPIAAPLAGWLVPLSEVADPVFASGSMGEGFAIDPLEGLVAAP
                     CDGTVSAVAPTRHSVTIETADGASLLIHVGLDTVALKGEGFELKVVAGERVRTGDPLI
                     AFDMTKVALGARSLMTPVVAIGEGERLAAGPAARRVERGELVAELSGAARQAAPALSA
                     QAERVVIVPMPNGIHARPAARLVDAAKAFTADIELRLADRRASARSTVALLKLAAKQG
                     DSLAVAAAGPDAETAVAALAALIESGMGEVHQAAAPAATSPHGVVAVPGLAIGIAARL
                     RRVDLDVPFDGQGVAEERAHLTGAIAAVRAGLGGSRGAAGEIAAAHLALLEDPELREA
                     ADVAIVEGRSAAFAWREAIREICAALDATGDALLRERIADFLDLERQVLGQLLGTTAV
                     TAALPASAILLGDDLLPSEFQALDPANLAGIALAAGGPTSHVAVLAAAAGIPMLVALG
                     DSIDAIADGAVLILDADNGRLVMDPDAQALDEAEKRLADRRQARAQARAEAAG"
     gene            complement(1506..3512)
                     /locus_tag="VE567_03035"
     CDS             complement(1506..3512)
                     /locus_tag="VE567_03035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 20 glycosylhydrolase"
                     /protein_id="HYZ47849.1"
                     /translation="MPRLCRLAALALLVGAQGAASGSPLLMPTAKAMKEGRGAFRLTA
                     ATPVGGDAAAANAFADLMQRTAGMRPSGKAGPAIRFLRVNGMAPESYRLEATPAGVSV
                     RASDSAGLYYGAVTLWQLATQPGSGGQVPAITIDDGPRFPWRGMMLDSARHYQSPAFI
                     KHFIEWMALNKLNRFHWHLVDDQGWRLEIRKYPRLTAVSAWRRPATAPGAPPLPPTGG
                     FYTQREVRDIVAFAAARGVTVVPEIELPGHALSAIRAYPRLGMGVPIPRGTESDWGVF
                     PWLYNVDEGTIRFLQDVLTEVMGLFPSREIHLGGDEAVKDQWKRSPAVQAKIKALGLK
                     DENALQAWLVDRLGRFLEAHGRRLVGWDEILDGDIPQGALVMSWRGTDGAVRAARAGH
                     DAVFAASPTLYFDHRQGGSAAEPPGRGSIVSLKDVLGVSPIPEGLDRPQRAHILGLQG
                     QVWTEHVRTEDRAAWMAFPRAIAVAEIGWSGATDYPDFLARLKPQLARLEPLGLRAAD
                     TAFRADPPPGASERDSTGLETCSGKVDLYLEDDAPTGDRRAKFLIDILDPCWRWPKAT
                     LDGVRSIELAVGQLPFNFQVGADRDAIRFRQPQTPDGEFEVRDGCDGAVLATLPLAPA
                     IGNPTVTALRAPMQPREGAHDLCFTYTAKGPDPLWAIDRVRLVR"
     gene            complement(3543..6257)
                     /locus_tag="VE567_03040"
     CDS             complement(3543..6257)
                     /locus_tag="VE567_03040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYZ47850.1"
                     /translation="MTKCHILLGASLVSLMAASAASAQTGNAPSDTAPAGQARPANAS
                     AESSSDDIIVTGFRASLQQSLEAKRLSDGVADVLSAEDIGKFPDKNVAEALQRVPGIV
                     INREFGEGERVSLRGTAPNLTKTLVNGHGIATADWFILDQLSATRSFNYLTLPAEIVG
                     QLDVYKSPQADVEEGGIGGTINVHTRHPLDLTPWAISASAQAVYSDRSGKWDPQASGL
                     ISWKNADETFGVLIGGVYQKREIRRDGVEVLGYQSVTTGGQTAQVPSLIGSALFQQER
                     ERYGGNVELQFRPSDSLEIVATGLYSRFNASNFNQNYLAWTANALGGGGTLTNATVQD
                     GTVVKGTITSVPGGRAVVYDAIYRDAFAETWSGDLDLNWQVSDSGRLHVKGGYTRARG
                     LTQSQPFYEGGAPGAFTFDITGRLPQVSFTGVDPTRPNDLIFDFASLHRVGNVDKEKY
                     LYADFEQEVDWGPISALRIGGKVTDHDRVASFLATTYGSFFLPLSQSGCGGRACTSAD
                     FAGGSLPGDFLDNIALPGTLTNYFNVDTAKLISILNSQPAANRARVLNPPENYSINEK
                     TYGGYVMARIGQKGDRFHGNFGVRVISTDQTSRGNQLGVPANTPGAVDNPFGTYLPIV
                     VKKSYTDFLPSVNLAFDVTPTVVVRFAAGRTIARPDYTDIVPRVSLNPGSLTGDGGDP
                     SVKPYRANGADLSVEWYPDRDTIVAAALYYKDIQSYIVNRTVQETFPVQTSTPNLSRC
                     TLVDAGQQLYNCLFDINRRSNGAGGTNKGFELQVSRPIWGGFGAVVNYTYSDAKSNNG
                     DPIPGNSKHALNVTGYYEDSHLSARVSYNYRSKFFINIDRASPLNQAATDSLDASLSY
                     KITDNIALTADAVNLTNTKIHQYAGTETRFRALYDNGRIFYAGVRVRY"
     gene            6454..7191
                     /locus_tag="VE567_03045"
     CDS             6454..7191
                     /locus_tag="VE567_03045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HYZ47851.1"
                     /translation="MGLAEDIGSLDGTGHAPLYLKLQDALRGVIDRGQVKAQEALPPE
                     RDLAQMLKVSRITVRKALDGLVSEGLLMRRQGAGTFVTGRVEKQFAKLTSFSEDMVSR
                     GRRPGSEWLLKAKGAVTPDEALMLGLSPGTAVFRFHRIRFADEMPMALEQSTIAGSCL
                     PSLDAVDVSLYEALEASGNRPVRALQRLRAVLFDEEQARLLHVEPGAPGLFIERRGFL
                     EDGRTVEMTHSWYRGDAYDFVAELNAL"
     gene            7188..8213
                     /locus_tag="VE567_03050"
     CDS             7188..8213
                     /locus_tag="VE567_03050"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007707031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HYZ47852.1"
                     /translation="MIAAESTHMFAEAAEAPAAVARLLAHNRDRSAALGSALRARPPG
                     LVLTCARGSSDHAATFAKYLIETRIGTPVASTAPSVASVYGATPLLGPSLCLAISQSG
                     ASPDLLATVDSLAAAGATLAAIVNDESSPLAGRADWLLPLKAGPERSVAATKSYIASL
                     AAVLQLVEDWSGNADASLEELPDLLERAWSCDWTPLVERLGDVRGLYVLGRGLGFGIA
                     QEAALKFKETCGLHAEAFSTAEVRHGPMALVGSDFPLLVFRQPDRTAEGIDALAAECA
                     ARGAPVFVVGASVPGAVTLPSIAANPAIAPLLHIQSFYRAATMLSVSRGLDPDSPPHL
                     KKVTETV"
     gene            8213..>8427
                     /locus_tag="VE567_03055"
     CDS             8213..>8427
                     /locus_tag="VE567_03055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008996032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HYZ47853.1"
                     /translation="MATVFRNGRVLVDGRLQEGLCVVVEHGRIQAVGPDTPDGDAVDL
                     QAGILAPGFIDTQVNGGGNVLFNDAPTV"
BASE COUNT         1368 a         2760 c         2890 g         1409 t
ORIGIN      
        1 acccgccgct tcggctctcg cttgggctcg cgcctggcgc cggtcggcca gccgcttctc
       61 ggcctcgtcg agcgcctgcg cgtccggatc catcaccagc cgtccgttgt cggcgtcgag
      121 gatcagcacg gctccatccg cgatggcgtc gatcgaatcc cccagtgcaa ccagcatcgg
      181 aatgccggcc gcggcggcaa gcacagccac gtgcgacgtc gggccgcccg cggcgagcgc
      241 gatgccggcc agatttgccg ggtcgagcgc ctggaattcg ctcggcagca gatcgtcgcc
      301 caacaggatc gccgaggccg gaagcgccgc cgttacggca gtcgtgccca gcaactgccc
      361 gagcacctgc cgctccagat cgaggaagtc cgcaatgcgc tcccgcagca gcgcgtcgcc
      421 ggtcgcgtcc agggcggcgc agatttcgcg gatcgcctcg cgccaggcga aagcggcgct
      481 gcgcccctcg acgatggcaa catcggccgc ctcgcgcagc tccggatcct caagcagcgc
      541 gagatgcgcg gccgcgattt ccccggctgc gccgcgcgat ccgccgagcc ccgcgcgcac
      601 ggcagcgatc gctccggtca ggtgcgcacg ttcctcggcc acgccctggc cgtcgaacgg
      661 cacgtcgaga tcgacccggc gaagccgcgc ggcgatgccg attgcgaggc cagggaccgc
      721 cacaacgcca tgcggcgatg tcgcggccgg ggccgccgcc tgatgcacct cgcccatgcc
      781 gctttcgatg agcgcggcga gcgccgcgac ggcggtctcc gcgtccggcc cggcggcggc
      841 gacggcaaga ctgtccccct gctttgccgc gagcttcagc agcgcgaccg tgctgcgcgc
      901 gctcgcccgg cgatcggcga gccgcagctc gatatcggcg gtgaaggcct tggcggcgtc
      961 gacgaggcga gcggcggggc gggcatggat gccgttcggc atcggtacga tcaccacgcg
     1021 ttccgcctgg gccgagaggg cgggcgcggc ttgcctggcc gccccggaca attcggcgac
     1081 cagctccccg cgttcgaccc gccgcgccgc tggtcccgca gccaatcgct cgccttcgcc
     1141 gatcgccacc accggggtca tcaacgagcg ggcgccgagc gcgaccttgg tcatgtcgaa
     1201 cgcaatcagg ggatcgcccg tccgcaccct ttcgccagcg acgaccttca gttcgaatcc
     1261 ttcgcctttg agggcgacgg tatcgagccc cacatggatg agcaaagatg ccccgtcggc
     1321 ggtttcgatc gtgaccgaat ggcgggtcgg cgcgacggcg ctcaccgtcc cgtcgcacgg
     1381 tgcggccacc agcccctcca gcggatcgat cgcgaagccc tcgcccatcg atccgctcgc
     1441 gaacacggga tcggcgactt cgctcagcgg aaccagccag ccggcgagcg gtgcggcgat
     1501 gggcgtcaac ggacaagcct cacgcggtca atcgcccaaa gcgggtcggg ccctttggcg
     1561 gtgtaggtga agcagaggtc gtgcgccccc tcgcggggct gcatcggcgc gcggagtgcg
     1621 gttactgtcg ggttgccgat ggcgggggcg agggggagag tggcgagaac cgctccgtcg
     1681 caaccgtctc gcacctcgaa ttcgccgtcc ggcgtctgcg gctggcggaa gcggatcgcg
     1741 tccctgtctg cgccgacctg gaaattgaat ggcaattggc cgaccgcgag ctcgatcgag
     1801 cggaccccgt caagcgtggc ctttggccag cgccagcacg gatcgaggat gtcgatcagg
     1861 aacttggcgc gccgatcgcc tgtcggagca tcgtcttcca aatagaggtc gaccttgccc
     1921 gaacaggtct cgaggccggt gctgtcgcgt tcgctcgctc ctggcggggg atcggcccgg
     1981 aacgccgtgt ccgccgcgcg cagtccgagg ggttccaggc gggcgagctg aggcttgagg
     2041 cgcgccagaa agtccggata gtccgtcgcg ccggaccagc cgatttccgc gacggcgatg
     2101 gcgcgcggaa acgccatcca ggcggctctg tcttcggtgc ggacatgctc ggtccagacc
     2161 tgcccttgca ggccgagaat atgagcgcgc tgaggccgat ccagtccctc cgggatgggg
     2221 cttacgccca acacatcctt caggctgacg atcgatcctc gcccgggcgg ttcggccgcg
     2281 gatccgccct ggcgatgatc gaaatagagc gtcggcgagg cggcgaacac ggcgtcatgc
     2341 ccggcccgtg ctgcgcggac cgcgccgtcc gtcccgcgcc atgacatgac gagcgccccc
     2401 tgcggaatgt cgccgtccag gatctcgtcc cagcccacca gccgccggcc atgggcttcg
     2461 aggaaccgcc ccaggcgatc gaccagccag gcctgcaggg cgttctcgtc cttcaggccc
     2521 agcgccttga tcttcgcctg gacggcgggg ctgcgcttcc actggtcctt gaccgcctcg
     2581 tcgccgccca gatggatttc gcgcgacggg aacaggccca tgacttcggt cagcacgtcc
     2641 tggagaaagc ggatcgtgcc ttcgtcgaca ttgtagagcc agggaaagac gccccaatcg
     2701 gactcggtgc cgcgcgggat cggcacgccc attcccaggc gaggataagc gcggatcgcg
     2761 ctcagcgcat ggccggggag ttcgatctcg ggcaccaccg tcacgccgcg cgcggccgcg
     2821 aaggcgacga tgtcgcgcac ttcgcgctgc gtgtagaagc cgccggtcgg cggcaatggc
     2881 ggcgcgccgg gcgcagtcgc cggacggcgc caggcggaca cggcggtcag gcgcggatat
     2941 ttgcggatct ccagccgcca gccctgatca tcgacaaggt gccaatggaa gcgattgagc
     3001 ttgttgagcg ccatccattc gatgaaatgc ttgatgaagg ccggcgactg atagtgccgg
     3061 gcagaatcga gcatcatccc acgccaggga aagcgcgggc cgtcatcgat ggtgattgcc
     3121 ggcacctgtc cgcccgaacc gggctgggtg gcgagctgcc aaagcgtgac cgcgccataa
     3181 tagaggccgg cgctgtcgct tgcccgaacc gacacgcctg cgggcgtggc ctccagccga
     3241 tatgactccg gcgccatgcc attgacgcga aggaagcgga tggcggggcc ggccttgccc
     3301 gatggcctca tgcccgccgt gcgttgcatg aggtcggcga aggcgttcgc tgcggcggca
     3361 tcgcccccaa ccggcgtggc agccgtgagc ctgaacgcgc cgcgcccttc cttcatcgcc
     3421 ttggccgtgg gcatcagcaa gggggagccg ctcgccgcgc cctgcgctcc gacaaggagt
     3481 gcaagggcag cgagacggca gaggcgaggc atgatcggct tcgttccggc ggtcacgcag
     3541 ccttagtagc ggacacgcac ccctgcgtag aagatgcggc cattgtcgta gagcgcccgg
     3601 aagcgcgtct ccgtcccggc atattgatgg atcttggtgt tggtcaggtt caccgcatcg
     3661 gccgtgagcg cgatattgtc cgtgatcttg tagctgagcg atgcgtccag cgagtccgtc
     3721 gcggcctggt tgagcggcga tgcacggtcg atgttgatga agaatttcga ccggtaattg
     3781 tacgacactc gggccgacaa atggctgtct tcataatagc cggtcacgtt cagcgcgtgc
     3841 ttcgagttgc cggggatcgg gtccccgttg ttcgatttgg cgtcggaata ggtgtagttc
     3901 acgaccgcgc cgaagccgcc ccagatcggt cgcgaaacct gcagttcgaa gcctttgttc
     3961 gtcccgcccg cgccgttgga gcgtcggttg atgtcgaaca gacagttgta aagctgctgg
     4021 ccggcatcga cgagcgtgca gcgcgacagg ttcggtgtcg aggtctggac cgggaaggtc
     4081 tcttgcaccg tccggttcac gatgtacgac tgaatgtcct tatagtagag tgctgcggct
     4141 acgatcgtat cgcggtccgg ataccattcg acgctgaggt ccgcgccgtt ggcgcggtag
     4201 ggcttgacgc tcggatcgcc accgtcgccg gtcagcgacc ccgggttcag gctgacccgc
     4261 ggcacgatat cggtatagtc cggacgagcg atcgtgcggc cggcggcgaa acgcaccacc
     4321 accgtcggcg tcacgtcgaa cgccaggttc acgctgggca ggaagtccgt ataggacttc
     4381 ttgacgacga tcggcagata ggtgccgaac gggttgtcca ccgcgcccgg cgtgttcgca
     4441 gggacgccga gctgattgcc acgagaggtc tgatccgtgg aaatgacacg gaccccgaaa
     4501 ttgccgtgga agcggtcgcc tttctggcca atgcgggcca tcacatagcc gccataggtt
     4561 ttctcgttga tcgagtaatt ctcgggcggg ttcagcacgc gggcccggtt ggcggcgggc
     4621 tgactgttca ggatcgagat cagctttgcc gtatcgacat tgaagtaatt ggtgagcgtg
     4681 cccggcagcg cgatgttgtc gagaaagtct cccgggaggc tgccgccggc aaagtccgcg
     4741 gaggtgcagg ccctcccgcc gcagccgctc tggctgagcg gcaggaagaa gctgccgtag
     4801 gtcgtcgcca ggaacgaggc gacccgatcg tgatcggtga ccttgccgcc tatcctcagc
     4861 gccgagatgg ggccccaatc gacctcctgc tcgaagtcgg cgtagagata tttctccttg
     4921 tcgacattgc cgacgcggtg gagcgaggcg aaatcgaaaa tgaggtcgtt gggccgcgta
     4981 ggatccacgc cggtgaagct cacctgcggg aggcgtccgg tgatatcgaa agtgaacgcg
     5041 cccggagcgc cgccttcata gaagggctgg gactgagtga gaccgcgcgc gcgggtatag
     5101 ccgcccttca catgcagccg gccgctgtcc gacacctgcc agttcagatc caggtcgccc
     5161 gaccaggtct cggcaaaggc atcacgatag atcgcatcat agaccacagc gcgcccgccg
     5221 ggcacggacg tgatcgtgcc tttgacgacg gtgccgtcct gcacggtcgc gttggtcagc
     5281 gttccgccgc cgcccagcgc gttcgcggtc caggcgagat aattctggtt gaagttgctg
     5341 gcgttgaatc gagagtagag gccggtcgcg acgatctcga gcgagtcgga aggccggaat
     5401 tgcagctcga cattgccgcc gtaacgctcg cgctcctgct ggaacagtgc cgatccgatc
     5461 agcgaaggga cctgcgcggt ctggccgccg gtcgtgactg actgatagcc gagcacctca
     5521 acgccgtcgc ggcggatttc gcgcttctga tagacgccgc cgatcagcac gccgaacgtt
     5581 tcgtcggcat tcttccagct gatcaggccc gaggcttgcg ggtcccattt gccgctgcgg
     5641 tccgaataga ctgcctgggc cgaggctgag atcgcccagg gcgtgaggtc gagcgggtgg
     5701 cgggtatgca cgttgatcgt gccgccgatg ccgccttcct ccacgtccgc ctgcggactt
     5761 ttataaacgt cgagctggcc gacgatttcg gccggcagcg tcagatagtt gaagctgcgg
     5821 gtggcggaga gctggtcgag gatgaaccag tcggcggttg cgatgccgtg gccgttgacc
     5881 agagtcttgg tgaggttcgg cgcggtgcca cgcagcgaca cgcgctcacc ctcgccgaat
     5941 tcgcggttga tgacgatgcc gggcacgcgc tgcagcgcct cggcgacgtt cttgtcaggg
     6001 aatttgccga tatcttcggc cgacagcacg tcggcgacgc cgtccgacag gcgcttggcc
     6061 tcgagcgact gctgcagcga tgcgcggaag ccggtgacga tgatgtcgtc ggacgacgac
     6121 tcggcgctgg cgttcgctgg ccgggcctgc cccgccggag cggtgtcgga aggcgcgttg
     6181 ccagtctggg cggaagcggc cgatgccgcc atcagtgaaa ccaggctcgc gccgagcaga
     6241 atatgacatt tcgtcatcgt cagtcccctc cttatgaccg ggcgccttgg acatttccaa
     6301 tcagctacca atcaatgacc acttcaatac catcatacga gtttggcggg ccgtcaagag
     6361 aaattgaaga aggtgtcaaa ggtgaagact gaaaaacagg cttggcattg gtattagatt
     6421 ggccatataa ctcgcagaat ggggagggcc ggaatgggct tggcagaaga cattggatcg
     6481 ctggacggca ctggccacgc gcctctctac ctgaagcttc aggacgcatt gcgcggggtg
     6541 atcgatcgcg gccaggtcaa ggcccaggaa gcgctcccgc cggaacgcga ccttgcgcag
     6601 atgctgaaag tctcgcgaat cacggtgcgc aaggcgctgg acgggctggt cagcgaaggg
     6661 ttgctcatgc gtcggcaagg ggccggcact ttcgtgaccg ggcgggtcga gaagcaattc
     6721 gcgaagctga cgtccttttc cgaagacatg gtgtcgcgcg gacgcaggcc cggcagcgag
     6781 tggctgctga aggccaaggg cgcggtcacg cccgacgaag cgctgatgct gggcctctcg
     6841 ccgggaacgg cggtctttcg cttccaccgc atccgttttg cggacgagat gccgatggcg
     6901 ctcgagcagt cgacgatcgc cggctcgtgc ctgccttcgc tcgatgccgt ggacgtgtcg
     6961 ctgtacgagg cgctcgaagc gagcgggaat cgcccggtgc gggcgctcca gcggttgcgc
     7021 gcggtgctct tcgacgagga acaggccagg ctgcttcacg tcgagcccgg ggcgccgggg
     7081 ctgttcatcg agcgccgggg ctttctcgag gacgggcgca cggtcgagat gacccacagc
     7141 tggtatcgcg gcgacgccta tgatttcgtc gccgagttga acgcgctgtg atcgcagccg
     7201 aatcgacaca catgttcgcc gaggcggccg aggcgcctgc cgccgtggcg cggctgctcg
     7261 cgcacaatcg ggaccgctcg gccgcgctcg gcagcgcgct gcgcgcgcgg ccgccgggcc
     7321 tggttctcac ctgcgcccgg ggcagctcgg accacgccgc gacgttcgcg aagtatctga
     7381 tcgaaacgcg gatcggcacg cccgtggcct ccacggcgcc atccgttgcc tcggtctatg
     7441 gcgcgacccc gctgcttggg ccgtcgctgt gcctggcgat ctcccaatcg ggcgccagcc
     7501 ccgacctgct ggcgacggtg gactcgctcg ccgcggccgg cgcgacgctc gccgcgatcg
     7561 tcaacgacga gtcgtcaccg ctcgccggac gtgccgactg gctgctgccc ctcaaggcgg
     7621 ggccggagcg gagcgtggcg gccaccaaaa gctatatcgc cagcctggcg gcggtcctgc
     7681 agctcgtcga agactggtcg ggtaatgccg acgcgtcgct ggaggaactc cccgatctgc
     7741 ttgagcgcgc atggagttgc gactggacgc cgctcgtcga gaggctaggg gacgtccgcg
     7801 ggctttacgt gctcggccgc gggctcggct tcggcatcgc ccaggaagcg gcgctcaagt
     7861 tcaaggagac gtgcggcctc catgccgaag ctttcagcac cgccgaagtg cggcacggac
     7921 cgatggcgct ggtgggcagc gacttcccgc tgctcgtctt tcgtcagccc gaccggacgg
     7981 ccgaaggcat cgacgcgctc gcagccgaat gcgcggcgcg cggggccccg gtcttcgtcg
     8041 tcggcgcgag cgttccgggc gccgtcaccc tgccgagcat cgcggcaaac cctgcgattg
     8101 cgccgctcct ccatatccag agcttctatc gcgccgcgac gatgctttcc gtgagccgtg
     8161 gcctggatcc cgattcgccg ccgcacctca agaaggtgac ggaaaccgtc tgatggcgac
     8221 tgtcttccgc aacggccggg tgctcgtcga cggcaggctg caggaaggcc tgtgcgtggt
     8281 cgtcgagcat ggcaggatcc aggcggtcgg cccggatacg ccagatggcg atgccgtcga
     8341 tctgcaagcc ggcatactcg ctcccggatt catcgacacc caggtgaatg gcggcggcaa
     8401 tgtgctgttc aatgacgccc caaccgt
//
LOCUS       DASQVK010000144         3466 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_199309,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000144 DASQVK010000000
VERSION     DASQVK010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3466)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3466)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3466
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199309"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..97)
                     /locus_tag="VE567_03060"
     CDS             complement(<1..97)
                     /locus_tag="VE567_03060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004208933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate/arogenate dehydrogenase family
                     protein"
                     /protein_id="HYZ47854.1"
                     /translation="MLPFARVSIIGLGLIGSSIARAVAAHMPTVRL"
     gene            complement(97..1197)
                     /gene="hisC"
                     /locus_tag="VE567_03065"
     CDS             complement(97..1197)
                     /gene="hisC"
                     /locus_tag="VE567_03065"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HYZ47855.1"
                     /translation="MLFPAPKPWIMDIAPYVPGRSTTDDGRKVAKLSSNENPLGTSPA
                     AREAFRSAADELERYPDASGAIVREAIAAQYDLDPMRVIYGNGSDEILHLAAGAFAGP
                     GDEVVFVRYGFAVYEIAARRVGATPVIAPDKDYATDVDAILACLTERTRIVYLANPNN
                     PTGTFAPREEIARLHANLPGDVLLVIDQAYAEYLDAGEDDGGLVLASAAPNVLVTRTF
                     SKIYGLAAERIGWGYASAEIVTALHRIRLPFNITIAGQRAAVAALHDEPFVARSKAHN
                     AKWRAWLAERIASLGNAGVRAVPSKANFLLVLFEGRLTAEAAYKGLMEAGYITRWLPG
                     QKLGHGLRISIGTEEEMLGMAEALRRLVEQAG"
     gene            1261..2370
                     /locus_tag="VE567_03070"
     CDS             1261..2370
                     /locus_tag="VE567_03070"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HYZ47856.1"
                     /translation="MLDDARFGLDRKARLPGPFPLDGGGTLAEIEIAYETYGALDAAG
                     ANAVLICHALTGDQHVASPHPRTGKPGWWDRVVGPGKPIDTDRFLVICANVLGSCMGS
                     SGPASLDPTGGRYGMRFPVITIRDMVRAQAALLDHLGIARLRAVVGGSMGGMQALQWA
                     ATYPRRVEAALVIASSARHSAQNIAFHEVGRQAIMADPNWRGGDYYEAEPPTRGLAVA
                     RMAAHITYLSEAGLTDKFGRRLQGRDAKSFGFDADFQVESYLRHQGLSFTDRFDANSY
                     LYITRAMDYLDIAEEHGGSLAAAFKATPTRFCLISFDSDWLYPTAESRAIVHALNAAG
                     APVSFVELSSPFGHDSFLLDQPQMNRVIAGFLGAA"
     gene            2367..2957
                     /gene="metW"
                     /locus_tag="VE567_03075"
     CDS             2367..2957
                     /gene="metW"
                     /locus_tag="VE567_03075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine biosynthesis protein MetW"
                     /protein_id="HYZ47857.1"
                     /translation="MKLRPDLAIIAANVAPGSRVLDVGCGDGALMAALRGDKQVDARG
                     LEIDPANVAAAVGRGLSVIQGDADVDLIDYPADAFDYAILSQTLQTTRRPDQVLDQLL
                     RIGRKAFVSFPNFAHWRVRLSLLFGGRMPVTRLLPLQWYETPNIHHVTIDDFRAFVAE
                     RGIRTEGAWFLSGDQLTSAAAANFFAEHAVFLLSRG"
     gene            complement(2954..>3466)
                     /locus_tag="VE567_03080"
     CDS             complement(2954..>3466)
                     /locus_tag="VE567_03080"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HYZ47858.1"
                     /translation="GGRGFHDTGITHITQRAGVALGTFYTYFDSKEEVFRALVRDLSG
                     QVRDAVSPHLQKSDRYFEAERIGRQAFFAFVTEHKEIYRIIDEAEFVDPEDYRAHYST
                     TADRIRARLEAGIARGEVKPCDAEVCAWAIMGINVFLGLRFGVWSEDRSPDQLANIVD
                     AMIAEGLRAA"
BASE COUNT          560 a         1146 c         1178 g          582 t
ORIGIN      
        1 tcagccggac cgtgggcata tgcgcggcaa cggcgcgcgc gatcgacgag ccgatcaggc
       61 ccagcccgat gatggaaaca cgcgcgaaag gaagcatcag cccgcttgct cgaccaggcg
      121 ccgcagcgct tcggccatac ccaacatttc ctcctcggtg ccgatcgaga tgcgcaggcc
      181 gtggccgagc ttctgccccg gcagccagcg cgtgatatag ccggcctcca tcaggccctt
      241 gtacgcggcc tcggcggtca gccgcccttc gaaaagcacg aggaggaaat tggccttgct
      301 cggtacggct cggacgccgg cattgccgag gctcgcgatc cgctcggcga gccaggcgcg
      361 ccacttcgca ttatgcgctt tcgagcgggc gacgaacggc tcgtcgtgaa gcgccgccac
      421 ggcagcgcgc tggccggcga tggtgatgtt gaacggcagc cggatgcggt gaagcgcggt
      481 cacgatctcg gccgaggcat agccccagcc gatccgctcc gccgccagcc cgtagatttt
      541 ggagaaagtg cgcgtgacca gcacgttcgg cgcggcgctg gcgagcacca gcccgccatc
      601 atcctcgccg gcgtccagat attctgcata ggcttggtcg atgaccagca gcacgtcgcc
      661 gggcaagttc gcgtgcagcc gggcaatctc ctcgcgcggt gcgaacgtgc ccgtcgggtt
      721 gttcggattg gcgagataga cgatccgcgt ccgctcggtc aggcaagcga ggattgcgtc
      781 gacatcggtc gcataatcct tgtcgggcgc aatcaccggc gttgcaccca cccggcgggc
      841 ggcgatttca tagaccgcga agccgtagcg gacgaaaacg acttcgtcgc cggggcccgc
      901 aaaggcgccg gcggccaggt gcaggatctc gtccgagcca ttgccgtaga tcacgcgcat
      961 cgggtcgaga tcatattggg cggcgatcgc ctcgcggacg atcgcgccgc tggcgtcggg
     1021 atagcgctcc agctcgtccg ctgccgaccg gaatgcctcg cgcgcggccg gactggtgcc
     1081 gagcggattc tcgttcgacg agagcttcgc gaccttgcgg ccatcgtcgg tcgtcgagcg
     1141 cccaggcaca tagggcgcga tatccatgat ccagggcttg ggcgcgggaa agagcatgcg
     1201 gcgcgtctag cggtcctcgc gcaattgaca aggcgcgcgg gcccgcccca agcggggcgc
     1261 atgctcgacg atgcccgttt cggcctggac cggaaagccc gcctgcccgg ccccttcccg
     1321 ctcgacggcg gcggaacgct cgcggaaatc gagatcgcct atgaaaccta tggcgcgctc
     1381 gacgccgcag gggcgaatgc ggtcctgatt tgtcacgcat tgaccggcga ccagcatgtc
     1441 gcctcgcccc atccgcgcac cggcaagccg ggctggtggg atcgcgtggt cgggccaggc
     1501 aagccgatcg acaccgaccg cttcctcgtg atttgcgcca acgtgctggg ctcctgcatg
     1561 ggatcgagcg gaccggcgag ccttgatcct acgggcgggc gctatgggat gcgctttcca
     1621 gtgatcacga tccgcgacat ggtgcgcgcc caggccgcct tgctcgacca tctcggcatc
     1681 gcgcggctgc gggccgtggt cggcgggtcg atgggcggca tgcaggcgct gcaatgggcg
     1741 gcgacctatc ccaggcgcgt cgaggcggcg ctggtgatcg cgtcttcggc gcgccattcg
     1801 gcacagaata tcgcgttcca cgaagtcggg cggcaggcga tcatggccga cccgaattgg
     1861 cgcggcggcg actattacga ggccgagccg ccgacgcgcg ggctcgccgt ggcgcggatg
     1921 gcggcgcaca tcacttatct gtccgaagcc gggctcaccg ataaattcgg gcgccggctc
     1981 caagggcggg acgccaagag cttcggcttc gacgccgatt tccaggtcga aagctatctg
     2041 cgccaccagg ggctgagctt caccgaccgg ttcgacgcca attcctatct ctatatcaca
     2101 cgggcaatgg actatctcga catcgcagag gagcatggcg gcagcctcgc cgccgcgttc
     2161 aaggcgacgc cgacgcgctt ctgcctgatc agcttcgaca gcgactggct ctacccgacg
     2221 gccgaaagcc gcgcgatcgt gcatgcgctg aacgccgccg gcgcgccggt cagcttcgtc
     2281 gagctgtcga gcccgttcgg gcatgacagc ttcctgctcg accagccgca gatgaaccgc
     2341 gtcatcgccg gttttctggg ggcggcgtga agctgcgccc cgatctggcg atcatcgccg
     2401 ccaatgtcgc gcccggcagc cgggtgctgg acgtcggctg cggcgatggc gcgctgatgg
     2461 cggcgctgcg cggcgacaag caagtcgatg cgcgggggct ggagatcgac cccgccaatg
     2521 tcgccgcggc ggtgggacgc gggctttccg tgatccaggg cgacgccgac gtggatctca
     2581 tcgactatcc ggccgatgcg ttcgactatg cgatcctgag ccagacgctt cagaccacgc
     2641 ggcggcccga ccaggtgctc gaccagctgc tgcggatcgg gcgcaaggct ttcgtatcct
     2701 tcccgaactt cgcgcattgg cgcgtgcggc tgtcgctgct gttcggcggg cgcatgcccg
     2761 tgacgcggct gctgccgctg caatggtatg agacgcccaa catccatcat gtgacgatcg
     2821 acgatttccg cgcgttcgtg gcggagcgcg gcatccggac ggagggggcc tggttcctgt
     2881 cgggcgatca gctcaccagt gccgcggccg cgaatttctt cgccgaacat gcggtgtttc
     2941 tgctgagcag gggttaggct gcgcgcaggc cctcggcgat catcgcgtcg acgatgttgg
     3001 caagctggtc gggcgaacga tcttcgctcc agacgccgaa gcggagcccc aggaacacgt
     3061 taatgcccat gatcgcccag gcgcagacct cggcgtcgca tggctttacc tcaccgcgcg
     3121 cgattccggc ctccaggcgc gcgcgaatgc ggtcggcagt ggtcgaatag tgcgcgcgat
     3181 aatcctcggg atcgacgaac tccgcttcgt cgatgatccg gtagatttcc ttgtgctcgg
     3241 ttacgaaggc gaaaaaggct tggcgcccga ttcgctcggc ttcgaaatag cggtcggact
     3301 tctgcagatg cgggctgact gcgtcgcgca cctggccgga cagatcgcgg accagcgccc
     3361 ggaacacttc ctccttgctg tcgaaatagg tgtagaacgt gccgagcgcg acgccggcgc
     3421 gctgggtgat gtgcgtgatg cccgtgtcat ggaagccccg cccgcc
//
LOCUS       DASQVK010000145         6912 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_199338,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000145 DASQVK010000000
VERSION     DASQVK010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6912)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6912)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6912
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199338"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..524
                     /locus_tag="VE567_03085"
     CDS             <1..524
                     /locus_tag="VE567_03085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HYZ47859.1"
                     /translation="LTEVPAAMNAALAHDAEIEAMAHTIAGARDVLYLGRGPDYPLAL
                     EGALKLKEISYIHAEGYAAGEMKHGPIALIDESVPVIVIAPSGPLFDKTVSNMQEVQA
                     RGGKVVLISDAEGLAQAGEGALATIEMPKVHPLIAPLVYAVPVQLLAYHVAVVKGTDV
                     DQPRNLAKSVTVE"
     gene            complement(651..2219)
                     /locus_tag="VE567_03090"
     CDS             complement(651..2219)
                     /locus_tag="VE567_03090"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase"
                     /protein_id="HYZ47860.1"
                     /translation="MSQVDRRALLLAGTGGAFGLYSWAASAAPNSGSLRLKRRHGAVP
                     RNILVVLTDDHRYDAMGFMNAQSFGETPTLDRLAQEGVHFRNAFVTTALCSPSRASIF
                     TGLYAHQHRVVDNNHPVDPSLVFFPQYLQAAGYRTGFIGKWHMGSEGDDPQRGFDHWV
                     SFRGQGSYLPSPDGLNVNGKRVPQRGYITDELTDYALDWIGSRERTRPWFLHLAHKAV
                     HSEFIPAERHRGRYDKETFRYPDTMAAQGPFAKGRPRWVQDQRNSWHGVDFPYHGTLD
                     IGAYYKRYMETLLAVDEGLARIMDLLERRGELDDTLILYMGDNGFMFGEHGLIDKRTA
                     YEESMRIPMLARCPALFGGGRKVEQVVANIDIAPTLLAAAGLDVPAHMEGADMLPLAQ
                     GRDVPWRSELLYEYYWERNFPQTPTVHALREDRYKYMHFHGIWDLDELYDLQADPRET
                     DNLLARPGHEALAERMSAKLFSLLEQTDGMQIPLARDAGERNVLRDIRFGAGAPFPAS
                     LMVDRQAKASTDSR"
     gene            complement(2216..3628)
                     /locus_tag="VE567_03095"
     CDS             complement(2216..3628)
                     /locus_tag="VE567_03095"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase"
                     /protein_id="HYZ47861.1"
                     /translation="MDRRSLLKAGAGAAATATFPAGLRAAALRRRNVLLLISDDQGLD
                     LGCYGVPIETPRLDAFARTATRFTQGYAAVSSCSPSRAVINTGLYTHQNGMYGLAHDV
                     HNQGLLDGIETLPFWLRRAGYATALVGKKHVRPDSAFPYESELEPERSGIRDVKALSD
                     AAIRFITANRDRPFFVTIGYSDPHRAAVDYGNDRRWPGVAEVHYEPSRVPIPSHLPDL
                     PQVRQDLAAYYESISRLDTGVGMLLDALAATGRADDTLVIFLSDNGRPFPGAKTNLYD
                     PGLHLPLIVRAPGAAPAVSEAMVSWVDIAPTILDFTGVKGPNYPLSGRSLLPILGRRQ
                     ATGWDEVVASHEFHEINQYYPMRALRTRTHSFIQNLASQLDYPVAGDVASSPSWKAIA
                     ADPNIRLGRRAQAAYLKRPAEELYDLRADPDELVNLAGQPGVAQLQREMRDRLTAIRA
                     KTHDPWLAGQTDPYSHLQSQ"
     gene            complement(3704..6193)
                     /locus_tag="VE567_03100"
     CDS             complement(3704..6193)
                     /locus_tag="VE567_03100"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYZ47862.1"
                     /translation="MMKSSFAAAMLRGAAFTALIMGSTSLRAQAGSETDATRAADQAQ
                     RTQGESPSIADTGPSGDDIIVVGTAGGGVRRQDAAFAVTSLDNDAIERAAPNSTADLL
                     RTIPGVMAESSGGQNGANIFVRGYPSSGDAQFVTFQLGGVPVYPPPTLSFLENSQLIR
                     LDETVQRVEAVRGGTGSLFSNGQPGLTVNVVPRIGGNELQGLVKFSYTDFEEARGDAW
                     ISGPLGEDTGFMVGGFYHQGNGIRDPRFRAEKGGQITANIHHDFGGRGSVEIYARYLD
                     DRGQWLLPIPVVQNGRKISEYPGFDAGTGTLMGPETRRTTNLQGRTVDLEEGRGAKVI
                     HTGLSFDYEVVDGLRVRERMNYLGGGADTIGLVPAGPPTAASAMAVTLGGAGSTVSSL
                     TFVNGGQAVSTGADTQVMRAGIWEVRKDLTSFVTDTSLEWSVGSNKLTGGFYYADYTS
                     RDNWALGNQVLLTAQPNARLLNMTLTNGAGVAQTATLNGFTSGNGFLVDAYYKGSDIA
                     FYAVDEFQITPELRVDGGVRWQKHKVDGLLRTPAATPVNLDGNPNTLYDNAVNVFGDR
                     RQLAPFRKDRWSWTAGVNYDLTSQIGVFGRYSRGYSFPQFDNLREGVDIVARVETYEG
                     GLKVSMPWLNLYATVFHNKFDGLATINLVTTPTDPTPRPVSAIGGAKATGVELEGAIR
                     PFEGFSVTAAGTYLDATYQNFFTGNGAINNSGNRVQRQPKWSWRVTPSYEVQVGGLRP
                     SVFATLQYTGDRFSDPENNQLLPHFYQLDAGVSVDIGQRLKLQVTGNNLTDEIGLTEG
                     NPRIIGGQGQGPILARPILGRSFRFSASYSF"
     gene            6383..>6912
                     /locus_tag="VE567_03105"
     CDS             6383..>6912
                     /locus_tag="VE567_03105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HYZ47863.1"
                     /translation="MSDIARLANVSKPTVSRVLNGSPLVSAGTRDRVLEVAQAHGYAV
                     NRNAQRLRQPRTNTIAVVLDFGSHRHGAIGDPFIFELLAGVSEALSVRDQDLLLSPPG
                     LDNLKGFLDLHRSKGADGFIVLGQGKRDEMLRTLARQDVPLVVWGAVDPSSGYCAVGS
                     DNLAGGRLAGERFATLG"
BASE COUNT         1237 a         2184 c         2268 g         1223 t
ORIGIN      
        1 acctgaccga agtccccgcc gcgatgaatg cggcgcttgc ccatgacgcc gagatcgaag
       61 cgatggcgca caccatcgcc ggggcgcggg acgtgctcta tctcggccgc ggtccggact
      121 atccgctggc gctggaaggc gcgctgaagc tcaaggaaat cagctatatc cacgccgagg
      181 gctatgccgc gggcgagatg aagcatgggc ctatcgcgct catcgacgaa agcgtgccgg
      241 tgatcgtgat tgccccctcc ggcccgctgt tcgacaagac agtctccaat atgcaggaag
      301 ttcaggcgcg cggcggcaag gtcgtgctga tctccgatgc ggaagggctg gcccaggccg
      361 gcgaaggggc gctggcgacg atcgaaatgc ccaaggtcca cccgctgatc gccccgctcg
      421 tctatgcggt ccccgtccag ctgctcgcct atcacgtcgc agtggtgaaa ggcaccgacg
      481 tcgaccagcc ccgcaatctc gccaagagcg tgacggtcga gtgagctatt ccaatggttg
      541 cgtgttgttc gctgccgaat gtccgccaag cgccaatgtc ttagtttagc agggcgctaa
      601 tcttcctgcc gccgctgaat aagcagaatt tgatgggacc agatcggcgc tcaccgcgaa
      661 tcggtggaag ccttcgcctg ccggtccacc atcaagctgg ccgggaaagg tgcgcccgcg
      721 ccgaagcgta tgtcgcgcag cacgttgcgc tcgccggcat cacgggcaag cgggatctgc
      781 atcccatccg tctgttccag cagactgaac agcttggcac tcatccgctc ggccaacgcc
      841 tcgtggccgg gacgcgccag caggttgtcg gtttcgcgcg gatccgcctg caggtcgtag
      901 agctcgtcca ggtcccagat gccgtggaag tgcatatatt tgtaccgatc ttcgcgaagc
      961 gcgtggacgg tcggcgtctg gggaaaattc cgctcccaat aatattcata gagcagctcg
     1021 gatcgccacg gcacatcccg cccctgcgcc agcggcagca tgtccgcgcc ttccatatgc
     1081 gcgggcacgt ccagtcccgc cgcagccagc agcgtcggcg cgatgtcgat gttggcgacg
     1141 acctgctcca ccttgcggcc gccgccgaat agggccgggc agcgggcaag catcggaatc
     1201 cgcatcgatt cctcataggc agtgcgcttg tcgatcaggc catgctcgcc gaacatgaag
     1261 ccgttgtcgc ccatgtagag gatcagcgtg tcgtcgagtt cgccgcgcct ttcgagcagg
     1321 tccatgatgc gcgccagccc ttcgtcgacc gcgagcaggg tttccatgta gcgcttgtaa
     1381 taagcgccga tgtccagcgt accgtgataa gggaaatcga cgccgtgcca gctgttgcgt
     1441 tggtcctgaa cccagcgcgg ccgccccttc gcgaagggcc cttgcgccgc cattgtgtcg
     1501 ggatagcgga acgtctcctt gtcatagcgc ccgcgatggc gctcggcggg aatgaactcg
     1561 ctgtgcacgg ccttgtgcgc caggtggagg aaccagggcc gggtgcgctc gcgcgatccg
     1621 atccagtcca gcgcataatc ggtcaactcg tcggtgatgt agccgcgctg gggcacgcgc
     1681 ttgccgttga cgttcaggcc atctggcgac ggaagatatg agccctgtcc cctgaagctt
     1741 acccaatgat cgaaaccacg ctggggatcg tcgccttcgc tccccatgtg ccatttgccg
     1801 ataaaccctg tccggtagcc ggcagcttgc aggtattgcg ggaagaagac cagcgacgga
     1861 tcaaccgggt ggttgttgtc cacgacccgg tgctggtgcg cgtagagccc ggtgaagatc
     1921 gacgcgcgcg acggcgagca gagcgccgtc gtcacgaatg cgttgcgaaa atgcacgcct
     1981 tcttgcgcca ggcgatccag cgtcggcgtc tccccgaacg actgtgcgtt catgaagccc
     2041 atcgcgtcgt agcgatggtc gtcggtcagc acgaccagga tgttgcgcgg aaccgcgcca
     2101 tgtcggcgct tgaggcgaag cgacccggag ttcggcgctg ccgaagccgc ccagctataa
     2161 aggccgaaag cgccgccggt cccggcgaga agcaacgcgc ggcggtcgac ctggctcatt
     2221 ggctctggag gtgggaatag gggtccgtct gccccgcaag ccatgggtca tgcgttttcg
     2281 cgcggatcgc agtcagccgg tcgcgcatct cccgctgcaa ctgcgcgacg cctggctgtc
     2341 cggccagatt gaccaactcg tcgggatcgg cgcgaaggtc gtacaattcc tcggccgggc
     2401 gtttcaaata ggcggcctgg gcgcggcggc cgagccggat gttcggatcg gccgcgatgg
     2461 ccttccagct tggcgaggaa gcgacatcgc ccgcgacggg ataatcgagt tgcgaagcga
     2521 gattctggat gaagctgtgc gtgcgcgtcc ggagcgcgcg catcggataa tattgattga
     2581 tctcgtggaa ctcgtgacta gcgaccactt cgtcccatcc ggtcgcttgc cgccggccga
     2641 ggatcggcag cagcgagcgg cccgagagcg ggtaattcgg gcctttcacg cccgtgaagt
     2701 cgaggatggt cggcgcgatg tcgacccagc tgaccatcgc ctcgctgacc gccggggctg
     2761 cgcccggcgc ccgcactatc agcgggagat ggagcccggg atcgtaaagg ttggtcttgg
     2821 cacccggaaa cggccggcca ttgtcgctaa gaaagataac cagcgtgtcg tcggcgcggc
     2881 cggtggcggc gagcgcatcg agcagcatgc caacgccggt gtcgagccgg ctgatggact
     2941 cgtaataggc cgccagatcc tggcggacct gcggcaggtc gggcaggtgg ctggggatcg
     3001 ggacgcggga tggctcgtag tggacctcgg cgacccccgg ccagcgccgg tcattgccgt
     3061 agtcgaccgc cgcccggtgg gggtcgctat agccaatggt gacgaagaag ggccgatccc
     3121 gattggccgt tatgaatcgg atcgcggcat cggacagcgc cttcacatcg cggatgcccg
     3181 accgctcggg ctccagctcg gattcgtagg ggaaggccga gtccggccgc acatgcttct
     3241 tgccgaccaa tgcggtcgca tagccggcgc ggcgcagcca gaaaggcagc gtttcgatgc
     3301 cgtccaaaag accctgattg tgaacgtcgt gcgccaggcc atacatgccg ttctggtgcg
     3361 tatagaggcc ggtgttgatc accgcgcggc tggggctgca cgacgacact gccgcatagc
     3421 cttgcgtgaa gcgcgtcgcg gttcgcgcga aggcatcgag gcgcggcgtc tcgatcggga
     3481 cgccatagca gccaagatcg agcccctgat cgtcagaaat cagcaggagg acgttgcgcc
     3541 tccgcagagc agccgccctg aggcctgccg gaaacgttgc ggtggccgcg gcgcctgccc
     3601 ccgctttcag caacgatcgc cggtccatcg ttcctccatc gcaacgctga aaaaaaagac
     3661 cgcgatccga cgaatatcgt cggatcgcgg cggaggggag aggtcagaaa ctgtaagacg
     3721 cgctgaaccg gaacgaccgg ccaaggatcg gacgagcaag gatcgggcct tgaccctggc
     3781 cgccaatgat gcgcggattg ccctcggtca gaccgatctc atcggtcaga ttgttgcccg
     3841 taacctgcag tttgagccgt tggccaatgt cgaccgaaac gccggcatcg agctgataga
     3901 aatgcggcag cagctggttg ttctccggat cggagaagcg gtcgccggta tattgcaggg
     3961 ttgcgaaaac cgatgggcgc aagccgccca cctggacctc gtaggacgga gtcacgcgcc
     4021 atgaccattt cggctgccgc tggacgcgat tgccgctgtt gttgatcgcg ccgttgccgg
     4081 tgaagaagtt ctggtaggtg gcgtcgagat acgtgcccgc tgcggtcacg ctgaagcctt
     4141 caaagggcct gatcgcgcct tccagctcga cgccggtcgc cttggcgccg ccgattgcgc
     4201 taaccggccg cggcgtcggg tccgtcggcg tggtcaccag gttgatcgtc gccagcccgt
     4261 cgaacttgtt gtggaacacg gtcgcataga ggttgagcca aggcatagag accttgaggc
     4321 cgccctcata ggtttcgacg cgtgccacaa tgtccacgcc ctcgcgcaga ttgtcgaact
     4381 gcgggaagct atagccacgg ctgtagcgcc cgaagacgcc gatttgcgac gtgaggtcgt
     4441 agttgacgcc cgcggtccac gaccagcggt ccttccggaa cggcgccagc tgacggcggt
     4501 cgccgaacac gttgactgca ttgtcataga gcgtgttcgg gttgccatcg aggttgaccg
     4561 gcgtggctgc gggcgtgcgc agcagtccgt ccaccttgtg cttctgccag cgaacgccgc
     4621 catcgacccg cagttcgggc gtgatctgga attcgtcgac cgcgtagaaa gcgatatccg
     4681 aacccttgta atatgcgtcc accaggaagc cgttgccgct ggtaaagccg ttcaaggtgg
     4741 cggtctgggc gacacccgcg ccgttggtga gcgtcatgtt tagcagacgc gcattcggct
     4801 gcgcggtcag cagcacctga ttgccgagcg cccaattgtc gcggctggta taatcggcat
     4861 agtagaagcc gccggtcagt ttgttcgagc cgacagacca ttcaagcgac gtgtcggtga
     4921 caaacgacgt caggtcttta cgcacttccc agataccggc gcgcatcact tgggtatcgg
     4981 cgccggtcga aacggcctgg ccgccgttca cgaaggtgag gctggagacg gtcgagccag
     5041 cgccgccgag cgtcacagcc atcgcggagg ccgccgtcgg cgggccggcg ggaacaaggc
     5101 caatcgtgtc ggcgccaccg cccagatagt tcatgcgctc gcggacgcgc agcccgtcaa
     5161 cgacctcata gtcgaatgac aaaccagtgt ggataacctt ggccccacgt ccttcctcca
     5221 ggtcgactgt acggccctgg agattggtcg tacgccgcgt ctccggcccc atcagcgtac
     5281 ccgtgccggc atcgaagccg ggatactcgc tgatcttgcg accgttctgc acgacgggaa
     5341 tcgggagcag ccactgcccc cggtcgtcga gataacgcgc gtaaatctct accgaaccgc
     5401 ggccgccgaa atcatgatgg atattggcgg taatctgccc gcctttctcg gcacggaaac
     5461 gcggatcccg gatgccattg ccctgatggt agaagcctcc caccatgaag ccggtgtctt
     5521 cgccgagcgg gccggaaatc caggcgtcgc cacgggcctc ctcgaaatcc gtataagaga
     5581 atttgaccaa gccttgcagc tcgttgccgc cgatccgcgg cacgacgttg acggtcaggc
     5641 ccggctggcc gttcgagaac aatgagccgg tgcctccacg caccgcttcc acccgttgca
     5701 ccgtctcatc gaggcggatg agctgcgagt tctcgagaaa tgaaagcgtg gggggcggat
     5761 agacgggcac gcccccgagc tggaaggtga cgaactgggc gtcgccggac gacggatagc
     5821 cgcgcacgaa gatgttggcg ccgttctggc cgcccgagct ttccgccatc acccccggga
     5881 tggtccggag caggtcggcg gtgctgttcg gcgcggcgcg ttcgatggcg tcgttgtcca
     5941 gagacgtgac ggcgaacgca gcgtcctgac gacgcacgcc gccgccagcc gtgccgacga
     6001 cgatgatgtc gtcgcccgag gggccggtat cggcaatgct cggcgactca ccttgcgtcc
     6061 gctgagcctg gtcggcggcg cgagtcgcgt ccgtttccga accggcctgc gcccggaggc
     6121 tggtgctgcc catgatcagt gcggtgaacg ctgcgccccg tagcatggcg gcggcaaagc
     6181 tcgacttcat catgattccc tcccactgga caacctcttg cgggcgtccg gatctggccg
     6241 atactgaaat gcatatcaga aatgtcaagt tttcgtttcg gcgccgcttg catgaaccct
     6301 ccccgcgcca tagcagtggc gcatggcgac caagggggac agaacggcgg cgaggacgag
     6361 tgccggaacg acgtcgctta acatgagcga cattgcgcgc ctggcgaacg tctcgaagcc
     6421 caccgtgtct cgcgtcctga acggcagtcc gctggtttcg gccggaacgc gcgaccgcgt
     6481 gctcgaagtc gcgcaggcgc acggctatgc cgtcaatcgc aacgcccagc ggctgcgcca
     6541 gccgcggacg aacacgatcg cagtggtgct cgatttcggt tcgcatcgcc acggcgcgat
     6601 cggcgatccg ttcatcttcg aattgctggc aggcgtatcc gaagcactgt cggtgcgcga
     6661 ccaggatctg ctgctgtccc cgcccggact ggacaacctc aaaggctttc tcgacctcca
     6721 tcgctcgaaa ggcgcggacg ggttcatcgt gctgggtcag ggcaagcgcg acgagatgct
     6781 acgaacgctg gcccggcagg atgtcccgct cgtcgtctgg ggcgcggtcg atccgtccag
     6841 cggctattgc gcagtcggca gcgacaattt ggctggcggg cgactggccg gcgaacggtt
     6901 cgctacgctc gg
//
LOCUS       DASQVK010000146         4721 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_262792,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000146 DASQVK010000000
VERSION     DASQVK010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4721
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262792"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..192)
                     /locus_tag="VE567_03110"
     CDS             complement(<1..192)
                     /locus_tag="VE567_03110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47864.1"
                     /translation="MTLTPFLHTPGHLPRERGVTPGGSFLYQYGDEGFSLGGGAAVSL
                     APAGFGRRGQMLAGGRFGNL"
     gene            298..2799
                     /locus_tag="VE567_03115"
     CDS             298..2799
                     /locus_tag="VE567_03115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HYZ47865.1"
                     /translation="MSSFASSPVAAVLGPTNTGKTHLAVERMCAHSSGMIGFPLRLLA
                     REVYDRVVAIKGPDQVALITGEEKILPRQARWFLCTAESMPIDRDVAFVAIDEAQLGS
                     DPERGHVFTDRLLRARGREETLILGSEALRPMVKTLLPKTEVVGRPRFSTLSFAGAKK
                     LSRLPKRSAIVAFSAEEVYAVAETLRRLRGGAAVVMGALSPRTRNAQVAMFQAGEVDY
                     LVATDAIGMGLNMDVAHVAFASLQKFDGRRTRRLTVAEMAQIAGRAGRHQRDGTFGSL
                     GSEDGPGAFTPEEIDAIENHAFPPLDFLYWRDGDPDMSSLDALIASLEARPDSPVLRA
                     APQAIDLAVLKRLADEDWVRERSCSPQAVKRLWAACGLPDFRKTGADHHARFVGRIFR
                     HLSEGDGHVPHTWFADEIARLDRTGGDVDTIADRIASIRSWSYIAHRADWLENPAHWA
                     ERTRAIEEKLSDALHAALTQRFVDRRTSVLLREIGAGMAELPVAIAEDGAVTVDDEHI
                     GTLNGFAFTPDATARHADARRLIAAADRRLSGERASRARALAASDDAAFALVSERGAR
                     PALAWNGRTIATFEPMRELLRPKLQLERAAAALEKSSRDIIFARLHRWLEARTEKLLD
                     PLERLAAAAADPATPRSLRALLAPLADAGGMLERKAVDPVLASLSREDRAAARKLGIT
                     IGALDVFAPALLKPEPLRWRTALLAVRARQTMPDLPPPGAVLAPASEPALPGFRRIGR
                     QQVRLDMVERIARAAHEAREGKRPFVPDPSLATSVGLEPATLRRLMQSLGFQVMPGAD
                     DAAPTAWRWQGRRRKEDAKPVNPNGPFAALAALGR"
     gene            2799..3092
                     /locus_tag="VE567_03120"
     CDS             2799..3092
                     /locus_tag="VE567_03120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013040901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HYZ47866.1"
                     /translation="MAEGSLRLDKFLWFARLAKTRDLAQSVAETGHMRISGRVVGRAH
                     APVRVGDVLSFPLNGRVRVIRIEALPARRGPAAEARLCYSDLSPPVDAPVKPA"
     gene            3128..3466
                     /gene="fdxA"
                     /locus_tag="VE567_03125"
     CDS             3128..3466
                     /gene="fdxA"
                     /locus_tag="VE567_03125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008069186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin FdxA"
                     /protein_id="HYZ47867.1"
                     /translation="MTYVVTEACIKCKYMDCVEVCPVDCFYEGDNMLVINPSECIDCG
                     VCEPECPAEAILPDTESGLEKWLELNASFSAQWPNVTRSRGAPEDADEFKGVEGKFDK
                     YFSPEPGQGD"
     gene            3763..4305
                     /locus_tag="VE567_03130"
     CDS             3763..4305
                     /locus_tag="VE567_03130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CarD family transcriptional regulator"
                     /protein_id="HYZ47868.1"
                     /translation="MAAKALSFDVGDYVVYPKHGVGRVVELQRQEIAGASLELYVLRF
                     EKERMTLRVPTNKAESVGMRKLSSDKTMREAMETLKGKPKVKRTMWSRRAQEYEAKIN
                     SGDLVSIAEVVRDLFRADDQPEQSYSERQIFEAAASRLARELAAMEQLDEPGAMKKIL
                     EILNKAAAIYNKAKEAAAAE"
     gene            complement(4385..>4721)
                     /locus_tag="VE567_03135"
     CDS             complement(4385..>4721)
                     /locus_tag="VE567_03135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004209194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell wall hydrolase"
                     /protein_id="HYZ47869.1"
                     /translation="VYFEAKSEPLEGQLAVAEVVMHRAVAGGRFPPSICSVVFQKGQF
                     SFVRGNGFPPIGRSSASWKTAVAIAQIALNNGWDSRASGALYFHAAGVRPGWNKVRVA
                     QLGNHIFYR"
BASE COUNT          797 a         1578 c         1595 g          751 t
ORIGIN      
        1 gagattgccg aaccggccgc ccgccagcat ctggccgcgc cgcccgaagc ccgccggcgc
       61 gagcgacact gccgcaccgc cgcccaggct gaatccttca tcgccatatt gatacaagaa
      121 gctgcccccc ggcgtgacgc cgcgctctcg cggcaggtgt ccgggagtgt ggagaaacgg
      181 ggttaacgtc aacctaagtt gctgatgcga aatccgttgt tgcggcgaac cgcacggcac
      241 gtgcgttcag tcgcacgcct tcttgtgttt atgcggtgaa cccccaaggt aagggccatg
      301 tcctcttttg cctcttcgcc cgtcgcggcg gtgctggggc cgaccaacac cggcaagacc
      361 catttggccg tcgagcgcat gtgcgcgcat tcgagcggga tgatcggctt cccgctccgc
      421 ctgctggcgc gcgaggttta tgaccgggtc gtggcgatca aggggcccga ccaggtggcg
      481 ctgatcaccg gcgaagaaaa gatcctgccc aggcaggccc gctggttcct ctgcaccgcg
      541 gaatcgatgc cgatcgaccg cgacgtggcc tttgtcgcga tcgacgaggc gcagctcggc
      601 agcgacccgg agcgcggcca tgtcttcacc gaccggctgc tccgcgcccg tgggcgcgag
      661 gagacgctga tcctcggctc cgaagcgctg cggccaatgg tcaagacgct gctgccgaag
      721 accgaagtgg tcggccggcc gcgcttttcg acgctgagct ttgccggggc caagaagctg
      781 tcgcgcctgc ccaaacgctc ggcgatcgtc gctttttcgg ccgaagaagt atatgcggtc
      841 gccgaaacgc tcaggcgcct gcgcggcggc gcggcggtgg tgatgggggc gctgtcgccg
      901 cgcacccgca acgcgcaagt ggcgatgttc caggccggcg aggtcgatta tctggtcgcg
      961 accgacgcga tcggcatggg cctcaacatg gacgtggcgc atgtggcttt cgcgtcgctg
     1021 cagaagttcg acgggcggcg cacgcggcgg ctcacggtcg ctgaaatggc gcagatcgcc
     1081 ggccgcgccg ggcggcacca acgtgacggg acgttcggct ccctgggaag cgaagacggc
     1141 ccgggggcct tcacgcccga ggaaatcgac gccatcgaga accacgcctt cccgccgctc
     1201 gactttctct actggcgcga cggcgatccg gacatgtcga gcctcgacgc actgatcgcc
     1261 tcgttggagg cgcggcccga cagccccgtg ctgcgcgccg caccccaggc gatcgacctt
     1321 gccgtcctca agcgccttgc ggatgaagac tgggtccgag agcgcagctg cagcccgcaa
     1381 gcggtcaaac ggctctgggc ggcctgcggc ctccccgatt tccgcaagac gggcgccgat
     1441 catcacgccc gcttcgtcgg ccgcattttc cggcatctgt ccgaaggcga cggccatgtg
     1501 ccgcacacct ggttcgccga cgagattgcg cggctcgacc gaaccggcgg cgatgtcgac
     1561 acgatcgccg accgcatcgc gtcgatccgg agctggtctt acatcgccca tcgcgccgac
     1621 tggctggaga acccggcgca ttgggccgaa cgcactcgcg cgatcgagga aaagctgtcg
     1681 gacgcgctgc atgccgcgct cacccagcgc ttcgtcgatc gccgcacctc ggtgctgctg
     1741 cgtgagatcg gtgcggggat ggccgagctg ccggtcgcga tcgccgaaga cggcgcggtc
     1801 acagtggatg acgagcatat cggcacgctc aacggcttcg ccttcacgcc cgatgcgacc
     1861 gcgcgccacg ccgatgcgcg ccggctgatc gccgcggccg accggcggct ctcgggcgag
     1921 cgggccagcc gcgcccgcgc gctcgccgcc agcgacgatg ccgccttcgc gctggtttcc
     1981 gagcgcggcg cccggcccgc cctcgcctgg aatggccgca cgatcgctac tttcgagccc
     2041 atgcgcgaac tgctgcgccc gaagctacag ctcgagcggg ccgcagcggc gctggagaag
     2101 agcagtcgcg acatcatctt cgcgcggctc caccgctggc tggaagcgcg cacggagaaa
     2161 ctcctggacc cgctcgagcg gctggcggca gccgcggccg atccggcgac gccgcgaagc
     2221 ttgcgcgcct tgctcgcgcc gctcgccgat gcgggcggca tgctggagcg gaaagccgtc
     2281 gatcccgtgc tggcaagcct gtcgcgcgag gatcgggcgg cagcgcgcaa gctcggcatc
     2341 acgatcggcg cgctcgacgt gttcgcgccc gcactgctga agcccgagcc gctgcgctgg
     2401 cgcaccgcct tgctcgccgt gcgtgcgcgc cagacaatgc ccgacctgcc gccacccggc
     2461 gcagtgctgg cgccggccag cgagccggcg ctgcccggct ttcgccgcat cggccgccag
     2521 caagtgcggc tcgacatggt cgagcgcatc gcccgcgccg cgcacgaagc acgcgaaggc
     2581 aaaaggccct tcgtgcccga tccgtccctc gccacttcgg ttgggctgga gccggcgacg
     2641 cttaggaggc tgatgcagtc gctcggcttc caggtcatgc cgggagctga cgacgcggcg
     2701 ccgaccgcct ggcgctggca ggggcgccgc cgcaaggaag acgcgaagcc ggtgaatccg
     2761 aacggtccgt tcgccgcgct cgccgccctg gggcgctgat ggcggagggc tcgctccgcc
     2821 tcgacaaatt cctgtggttc gcccggctcg cgaaaacgcg ggatttagca caatccgtcg
     2881 ccgagaccgg ccatatgcgg atcagcggcc gcgtcgtcgg ccgggcgcat gcgccggtcc
     2941 gggtgggcga cgtgctgagc tttccgctga acggtcgcgt gcgcgtgatc cggatcgagg
     3001 cgcttcccgc ccgccgcgga ccggctgccg aagcgcggct ttgctactcg gacttgtcgc
     3061 cgccagttga cgcgccggtg aagcccgcat agcggaggcg tgttcgccaa caagggccct
     3121 gcgcaaaatg acctatgtcg tcaccgaagc ctgcatcaag tgcaagtata tggactgcgt
     3181 cgaggtctgc ccggtcgact gcttctatga aggcgacaac atgctggtga tcaatcccag
     3241 cgaatgcatc gattgcggcg tgtgcgagcc cgaatgtccg gccgaagcga tcctgccgga
     3301 cacggagagc ggactggaaa agtggctgga gctgaatgcg agcttctcgg cgcaatggcc
     3361 gaacgtgacc cgcagccgcg gcgctcccga agatgccgat gagttcaagg gcgtggaagg
     3421 caagttcgac aaatatttct cgccggagcc cggccagggc gactgacggg ctcggtctga
     3481 gagatcggcc tgcagacgct gaatgttggc ctgaaggagc ttgtcgaata cagtattcgc
     3541 acggtagtct tttgtctgct gcaccgctgg cattgtcgtg acgaatctgt taaaagcctg
     3601 cccaccgggc ctggtcccgg ccagatgtct tcttacatct gcaagaaagg tccaaacctc
     3661 ctccgatcac ccgcatcccg tgaggtcgct ttacgcccca gagcttttgg ccaggggccg
     3721 ctgggatgca ggcaaagatg gcatagacga gaaaggtcaa tcatggctgc caaggcgctc
     3781 agcttcgatg tcggcgatta tgttgtgtat cccaagcatg gggtcggtcg cgtcgtggaa
     3841 ttgcagcggc aggaaatcgc gggcgcgagc ctcgaactgt acgtgcttcg ctttgaaaag
     3901 gagcgcatga cgctccgcgt gcccaccaac aaggccgaga gcgtcggcat gcgcaaattg
     3961 tcgtccgaca agacgatgcg cgaggcgatg gaaacgctga aaggcaagcc caaagtcaag
     4021 cgcaccatgt ggtcgcgccg ggcccaggag tatgaagcga agatcaactc gggcgatctc
     4081 gtctcgatcg ccgaggtggt gcgcgacctg ttccgcgctg acgaccagcc cgagcagagc
     4141 tattcggagc gccagatttt cgaagcggcc gccagccgcc tcgcacgcga gctggccgca
     4201 atggaacagc tcgacgagcc gggcgccatg aagaagattc tcgagatcct caacaaggcg
     4261 gcggcgattt acaacaaggc caaggaagcc gcggctgccg aataagccga gccggtcttc
     4321 gggctaaaaa aggggcggcg ccttggctgg tgccgcccct tttttgtgct ccgctctcgc
     4381 gggcttagcg atagaagatg tggttgccga gctgcgccac gcgaaccttg ttccagcccg
     4441 gccgcacgcc agcggcgtgg aagtagagcg cgccggatgc gcggctgtcc cacccgttgt
     4501 tgagcgcgat ctgcgcgatc gcgaccgcgg tcttccagga ggcgctgctg cggccgatcg
     4561 gcggaaagcc gttgccgcgc acgaaggaga actgcccctt ctggaacacc acggagcaga
     4621 tggacggcgg gaagcgcccg cccgcgaccg cgcggtgcat gacgacttcg gcgacggcga
     4681 gctggccttc gagcggctcg ctcttcgctt cgaaataaac g
//
LOCUS       DASQVK010000147         2286 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_452551,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000147 DASQVK010000000
VERSION     DASQVK010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2286
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_452551"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1215)
                     /locus_tag="VE567_03140"
     CDS             complement(<1..1215)
                     /locus_tag="VE567_03140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYZ47870.1"
                     /translation="MTKLKDTYPLYLANEAWAGNADLEVTDKYTGKVAFRVAMARAEQ
                     IDAGIAAAVEAAEPMARMASYERQDVLNHCVARFKERFDELAFALCVEAGKPIKDAEG
                     EVTRLIDTFRIAAEEAVRMTGEVQPLDISPRARGYQGIWKRVPIGPCSFISPFNFPLN
                     LAAHKIAPAIAVGCPFVMKPASRTPLGAIIMGEVLAETNLPKGAFSILPAHREGADLF
                     TEDERLKLLSFTGSPGVGWDLKAKAGKKKVVLELGGNAAVVIDRDADLDDAVERTVFG
                     AFYQSGQSCIGVQRIVVHDQVYDAFKEKLVARTRALVAGDPHDRNTFVGPMIDVKEAE
                     RLDRWIQEAVAGGAKLLCGGKREGAMLEATLLEDVGRDTKLNREEAFGPVAFFERFRT
                     WQEALGIVNDSKF"
     gene            complement(1220..>2286)
                     /locus_tag="VE567_03145"
     CDS             complement(1220..>2286)
                     /locus_tag="VE567_03145"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013833802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HYZ47871.1"
                     /translation="LEAARSPILVIGAGANRKMTSRMLLQFIEKTGIPFVTTQLGKGV
                     VDETHPKFVGCAALSAGDFVHRAIEAADVIVNVGHDVIEKPPFFMARGGAQVIHISTK
                     SAEVDPVYFPQIEVLGDIGNAIWQIKEDIVPSGNWRFDDMLRFRAAELEHTRSIDDDA
                     RCPIHPAHLVKQVRAAMPADGIICLDNGVYKIWFARNYAARQQNTVLLDNALATMGAG
                     LPSAMASAMVYPDREVMAICGDGGFMMNSQEMETAVRLGLNITVLILNDSSYGMIRWK
                     QANMGFKDWGLTYGNPDFVKYAESYGAHGHRVTSAEMLPGLLSQCLGTPGVHLIDCPV
                     DYSENDKILNNDIKQLSKAL"
BASE COUNT          387 a          723 c          739 g          437 t
ORIGIN      
        1 gaatttgctg tcgttgacga tgccgagcgc ttcctgccag gtgcggaagc gctcgaagaa
       61 tgcaaccggg ccgaacgcct cttcgcggtt gagcttggtg tcgcggccga catcctcgag
      121 caaggtcgct tccagcatcg cgccttcgcg cttgccgccg cagagcaatt tggcgcctcc
      181 agcgaccgct tcctgaatcc agcggtcgag ccgctcggct tcctttacgt cgatcatcgg
      241 gccgacgaac gtgttgcggt cgtgcggatc gccggcgacc aatgccctgg tcctggcgac
      301 gagcttttcc ttgaacgcgt catagacctg atcgtgcacg acgatccgct gcacgccgat
      361 acagctctgg ccggactggt agaacgcgcc gaacaccgtc cgctcgaccg cgtcgtccag
      421 atcggcatcg cggtcgatca ccaccgcagc gttgccgccc agctccagca cgaccttctt
      481 tttgccggcc ttggccttca ggtcccagcc cacgcccggc gaaccagtga aggaaagcaa
      541 tttcagccgt tcgtcctcgg tgaacaggtc ggcgccttcg cggtgagcgg ggaggatcga
      601 gaaagcgccc tttggcaggt tcgtctcggc gagcacttcg cccatgatga tcgcgcccaa
      661 gggcgtgcgg ctggccggct tcatcacgaa cggacagccg accgcgatcg ccggcgcgat
      721 cttgtgggcg gcgaggttga gcgggaaatt gaagggcgaa atgaacgagc aggggccgat
      781 cggcacgcgc ttccagatgc cctgatagcc gcgggcgcgg ggggagatgt cgagcggctg
      841 gacttcgccc gtcatgcgga ccgcttcctc ggcggcgatg cggaacgtat cgatcaggcg
      901 cgtgacctcg ccctcggcat ccttgatcgg cttgccggct tcgacgcaga gcgcaaaagc
      961 gagttcgtcg aaccgctcct tgaagcgggc gacgcagtga ttgagcacgt cctgccgctc
     1021 ataggacgcc atccgcgcca tcggttcggc cgcttcgacg gcggcggcga tgccggcgtc
     1081 gatctgctcg gcccgcgcca tcgccacgcg gaaggcgacc ttgccggtgt atttgtccgt
     1141 gacctcgagg tcggcattgc cggcccaggc ctcgttggcg aggtagagcg gataagtgtc
     1201 cttgagcttc gtcatcggct cacaacgctt tcgaaagctg cttgatgtcg ttgttcagga
     1261 tcttgtcgtt ctcggaatag tcaaccgggc agtcgatcag gtgcacgccc ggcgtgccga
     1321 ggcattgcga cagcaggccc ggcagcatct ccgcgctggt aacgcggtgg ccgtgggcgc
     1381 catagctctc ggcatatttc acgaaatcgg ggttgccata ggtgagcccc caatccttga
     1441 agcccatatt ggcctgcttc cagcggatca tgccgtagct gctgtcgttc aggatcagca
     1501 cagtgatgtt gaggccgaga cggactgccg tctccatttc ctggctgttc atcatgaacc
     1561 cgccatcgcc gcagatcgcc atcacctcgc ggtcgggata gaccatcgcc gaggccattg
     1621 ccgagggcag gccggcgccc atcgtcgcga gcgcattgtc gagcagcacg gtattctgct
     1681 gccgcgccgc ataattgcgc gcgaaccaga ttttatagac gccattgtcg agacagatga
     1741 tgccgtcggc gggcatcgcc gcgcggacct gcttgacgag gtgcgccggg tggatggggc
     1801 aacgggcgtc gtcgtcgatg ctgcgcgtat gctcgagttc ggcggcgcgg aagcggagca
     1861 tgtcatcgaa acgccagttg cccgagggga cgatgtcttc cttgatctgc cagatggcgt
     1921 tgccgatatc gcccagcacc tcgatctgcg ggaaatagac cgggtccact tccgccgact
     1981 tggtcgagat gtgaatgacc tgcgcgccgc cgcgcgccat gaagaaaggc ggcttttcga
     2041 tcacgtcatg gccgacattg acgatcacgt ccgccgcctc gatcgcgcgg tggacgaaat
     2101 cgccagccga cagcgccgcg cagcccacga acttcgggtg tgtctcgtcg acgacgccct
     2161 tgccgagttg ggtggtgacg aacggaatgc cggtcttctc gatgaactgg agcagcatcc
     2221 ggctcgtcat tttgcgattg gcgccggcgc cgatgacgag gataggcgag cgcgccgcct
     2281 ccagtt
//
LOCUS       DASQVK010000148         2548 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_199415,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000148 DASQVK010000000
VERSION     DASQVK010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2548
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199415"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(108..869)
                     /locus_tag="VE567_03150"
     CDS             complement(108..869)
                     /locus_tag="VE567_03150"
                     /inference="COORDINATES: protein motif:HMM:NF005476.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphorylase"
                     /protein_id="HYZ47872.1"
                     /translation="MMGAGAAATAGNGIEFNSIDDDPVDRRPVLIVTGLAQEARIAGG
                     PGMIVICSSSDPQQLRALLATLDPSTFRGVISFGVAGGLDPSLKSGDVVVATEVLAGD
                     TRFLAASALNEQMIASAALRGRRIVKGGLAGVEQVVAAKASKAALRSETGAAAVDMES
                     HIAAAYAARAAIPFAAIRVISDPAHRALPELVKTAVKPNGDIDLRKVLRGVARNPRTL
                     RALVSTGIDFNRALRSLRGCRGFLLGGENLVPASI"
     gene            complement(869..>2548)
                     /gene="shc"
                     /locus_tag="VE567_03155"
     CDS             complement(869..>2548)
                     /gene="shc"
                     /locus_tag="VE567_03155"
                     /EC_number="5.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008067666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051007 - squalene-hopene cyclase activity
                     [Evidence IEA];
                     GO_process: GO:0019746 - hopanoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="squalene--hopene cyclase"
                     /protein_id="HYZ47873.1"
                     /translation="ASVKSYFALKMIGDSVDAPHMVRAREAIRSRGGAAGSNVFTRFL
                     LALFGILTWRAVPVLPIEIMLLPMWSPFHINKISYWARTTMVPLMVLAALKPRAKNPK
                     GVGIDELFLQDPKSVGMTAKAPHQSWGWFLLFRALDAILRVIEPLFPKKLRQRAIDAA
                     LVFTEERLNGEDGMGAIYPPMANIIMMYEALGKGEDFPPRAVTRRGLEKLLVIGEHEA
                     YCQPCVSPVWDTALTCHALAEAGGEETFAKMKQGLDWLKPRQVLDLKGDWAVKAPNVR
                     PGGWAFQYNNDYYPDLDDTAVVVMAMDRARRHTGSGEYDTAMARGREWIEGLQSRNGG
                     WAAFDVNNLEYYLNNIPFSDHGALLDPPTEDVTARCISMLAQLGETAQSSKAVADGIA
                     YLRRTQLAEGSWYGRWGLNYIYGTWSVLCALNAAGVDHQDPMIRKAVAWLVSIQHADG
                     GWGEDAVSYRLDYRGYEAAPSTSSQTAWALLGLMAAGEVENPAVARGVEYLKSTQTEK
                     GLWDEPRYTATGFPRVFYLRYHGYSKFFPLWAMARYRNLRSTNSRVVGVGM"
BASE COUNT          464 a          886 c          766 g          432 t
ORIGIN      
        1 cagaaggctt ccaccgccgc ataaagcgca cggaaacccg acttcatggc aaaaggccca
       61 accgctgcct gcggtcgggc cttttcgtca accgaaaccg aacgaactca gatgctcgcc
      121 ggaacgagat tctcgccgcc gagcaggaag ccacggcagc cacgcagcga gcgcagcgcg
      181 cggttgaagt cgatgccggt cgagaccagc gcgcgcagcg tccgcgggtt gcgcgccacc
      241 ccacgcagga ccttgcgcag gtcgatgtcg ccgttcggct tcaccgcggt cttgacgagt
      301 tccggcaacg cccggtgggc gggatcgctg atcacccgga tcgccgcaaa gggaatggcc
      361 gccctggcgg cataggctgc cgcgatatgg ctttccatat cgaccgcggc ggcccccgtc
      421 tccgaccgca gcgccgcctt gctggccttg gcggcaacca cctgctcgac gcccgccaat
      481 ccacccttga cgatcctgcg gcccctcagt gcggcgctgg cgatcatctg ctcgttcagc
      541 gcggacgcgg ccagaaatcg cgtgtcgccg gcgagcacct cggtcgccac caccacatcg
      601 ccggacttca gcgacgggtc gagaccgccg gccacgccaa agctgatgac gccccgaaat
      661 gtcgacggat ccagtgtcgc cagcagcgca cggagctgct gcggatcgct cgaactgcag
      721 atgacgatca tgccgggccc gcccgcgatg cgggcctcct gcgccaaacc tgtaacaatc
      781 aaaaccggcc gccggtcaac tggatcgtcg tcaatcgaat tgaactcaat cccgttgcct
      841 gcggtcgcgg cggcccccgc ccccatcatc acatcccgac ccctaccacc ctgctgttgg
      901 tgcttctcaa attccgatac cgcgccatcg cccagagcgg aaagaatttt gagtagccat
      961 gatatcgcaa gtaaaatacc cgcggaaagc ccgttgccgt atagcgcggc tcgtcccaca
     1021 gccctttttc ggtctgtgtg ctttttaggt actccacccc ccgcgcaact gcgggattct
     1081 ccacctctcc cgccgccatc aggccaagca aagcccatgc cgtttgcgag gaggtcgagg
     1141 gcgcggcctc gtatccccgg taatccagcc ggtagctgac ggcatcctcg ccccagccgc
     1201 catcggcatg ctggatcgag accagccaag ccacggcttt gcgaatcatc gggtcctggt
     1261 ggtcgacccc ggcggcgttg agcgcgcaca ggaccgacca ggttccatag atgtagttca
     1321 gcccccatcg gccgtaccac gagccctccg caagctgggt gcggcgcaga taggcaatgc
     1381 cgtcggcgac cgccttgctg ctctgtgccg tctcgccgag ctgcgccagc atcgagatgc
     1441 agcgcgcggt gacgtcctcg gtcggcgggt cgagcaacgc gccgtggtcg gagaacggga
     1501 tgttgttgag ataatattcg aggttgttga cgtcgaaggc ggcccagccg ccgttacggc
     1561 tctgcaagcc ctcgatccat tcgcggccgc gcgccatggc ggtatcgtat tcgccgctgc
     1621 cggtatggcg gcgtgcccga tccatcgcca tcaccacaac tgcggtgtcg tcgaggtcgg
     1681 gataatagtc gttgttgtac tggaacgccc agccgccggg acggacattg ggcgccttga
     1741 ccgcccagtc tcccttgaga tccagcacct gcctcggctt gagccaatcg aggccctgct
     1801 tcatcttggc aaaggtctcc tcgccgccgg cttcggcaag cgcatggcaa gtcaacgcag
     1861 tgtcccacac cggcgagacg cagggctggc aataggcctc gtgctcgccg atcacgagca
     1921 gcttttcgag gccgcgccgc gtcaccgcgc gcggcggaaa atcctcgccc ttgccgagcg
     1981 cctcgtacat catgatgatg ttggccatcg gcggatagat cgcgcccatg ccatcctcgc
     2041 cgttcagccg ctcctcggtg aagacgagcg cagcgtcgat cgcgcgctgg cgcagctttt
     2101 tgggaaataa tggctcgatc acgcgcaaga tcgcatcgag cgcgcggaac agcaggaacc
     2161 agccccagct ctggtgcggc gccttcgccg tcatgccaac cgatttcgga tcctgcagga
     2221 acaattcgtc gatgccgacg cccttcggat tcttcgcgcg cggcttcaac gccgccagca
     2281 ccatcagcgg caccatggtg gtgcgggccc aataggagat cttgttgata tgaaagggcg
     2341 accacatcgg cagcagcatg atctcgatcg gcagcaccgg caccgcgcgc caggtcagga
     2401 tgccgaacag cgcgagcagg aagcgggtga atacattgct gccggcggcg ccgccgcgcg
     2461 agcggatcgc ctcgcgcgcc cgcaccatat gtggcgcgtc gacggaatcg ccgatcatct
     2521 tcagcgcgaa ataagacttt acgctcgc
//
LOCUS       DASQVK010000149         2415 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_389634,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000149 DASQVK010000000
VERSION     DASQVK010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2415
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389634"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..578)
                     /locus_tag="VE567_03160"
                     /pseudo
     CDS             complement(1..578)
                     /locus_tag="VE567_03160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009867220.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
     gene            complement(748..2049)
                     /locus_tag="VE567_03165"
     CDS             complement(748..2049)
                     /locus_tag="VE567_03165"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF002751.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HYZ47874.1"
                     /translation="MSSSAAPAFDGPRCFCRDCLDDLDFSAKRCARCGSPRLVRHHAL
                     PSLSLAHIDCDAFYATVEKRDNPEIADRPVIIGGGKRGVVSAACYIARTYGVRSAMPM
                     FKALALCPHAVVIGPDMAKYVRVGREVRQAMQALTPLVEPLSIDEAFLDLSGTQRVHG
                     MPPAKVLARFARDVESKIGITVSVGLSCNKFLAKIASDLDKPRGFAALDQDEARNMLS
                     DKPVGFILGVGPATQEKLIQRGFRTIADLQCADEVELMKQFASDGRRLWRLARGIDDR
                     NVVPDRGAKTISSETTFENDLRDFATLEKLLWKLSEKVSARLKNGELAGSTITLKLKT
                     ADFRQRTRSQSIAAPTQLAAKIFAISREMLAKEIDGTAFRLMGAGVSALRPGSAADDS
                     DMLDRRSAHAERAMDDLRKRFGSAAVIRGIAYDGPEKAEEA"
     gene            complement(2046..>2415)
                     /locus_tag="VE567_03170"
     CDS             complement(2046..>2415)
                     /locus_tag="VE567_03170"
                     /inference="COORDINATES: protein motif:HMM:NF023518.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3572 domain-containing protein"
                     /protein_id="HYZ47875.1"
                     /translation="FERLGHDGPLIRDHKLTERQTDQLKKPVQNPREVAEIVAVQALG
                     FVAGDPERLGLFLAETGIGPETLRTAAADPKFLGAVLDFVMRDDATVRAFAAASELHP
                     TNIAAARQVLGDPHWERDVP"
BASE COUNT          441 a          804 c          732 g          438 t
ORIGIN      
        1 cgtcggcatc gagcgccacc cagtgctggg cgagcagcaa tagcgcgccc cgcatgacct
       61 cggggacttc ctcattgggc gcttcgagct tggccatcag ttcacgcagg cccttgacgc
      121 cctgcgccgc cacgatccca agttcgctca gcgccgcccg cagcgagttg gcgatcatcg
      181 tgcgttgccg caccaacagc gtgcgggtgg tgtgaatagc catcgtcgct tgttgctcga
      241 cgctcttccg gcacgaaccg catcgtcggc cggctgaccg cctcgcagat cgcctccgcg
      301 tcacggccgt cgttcttatt gcgcttcaga taaggcttca catagaccgg cggcatcaat
      361 cggacctggt ggccatagcg gccgatcact cgcgcccagt ggtgcgcact accacacgcc
      421 tcaaccccta ctgtgcatgg agacagctgt gcaaaaaact tctccacagc gccgcgccga
      481 agctgccgtc tcagcacaac ctctcccgaa gcatcaaccc cgtgaacctg aaacacgttc
      541 ttcgctaaat ccaaaccaac tgtgctaatc tcgttcatgg acggctcccc tgtctggtcg
      601 aatcgacatc accagtctgg cacattgatg ccgtcggggg ccgtccaccc catctttgcg
      661 agcgaagcga agcaatccat ttatccgcgc gccacgatgt ggattgcgtc cgccgcgttc
      721 ctcgcaaatg acggcgggag gaagcagcta cgcctcctca gccttctccg gcccgtcata
      781 cgcaatcccg cggatcaccg cggcgctgcc gaaccgcttc cgcaaatcat ccatcgcgcg
      841 ctcggcgtgc gccgagcggc ggtcgagcat gtcgctgtca tcggccgccg agcccggacg
      901 tagcgcgctg acgcccgcgc ccatcaggcg gaaggcagtg ccgtcgatct cctttgccag
      961 catttcgcgc gaaatcgcaa aaatcttggc ggcaagctgc gtcggtgccg cgatcgactg
     1021 cgagcgggtg cgctggcgaa aatcggcggt cttcagcttc agcgtgatgg tcgagccggc
     1081 cagttcgccg ttcttcagcc gcgcggacac tttctcggac agcttccaca gcagtttttc
     1141 aagcgtcgcg aaatcgcgga ggtcgttctc gaacgtggtt tcgctggaaa tcgtcttggc
     1201 gccgcgatca ggcaccacgt tgcggtcgtc gatgccgcgc gccagccgcc ataatcttcg
     1261 cccgtcgctc gcgaactgct tcatcaattc gacctcgtcg gcgcactgca ggtcggcgat
     1321 ggtacgaaaa ccgcgctgga tcaatttctc ctgagtagcc ggcccgacgc caagaatgaa
     1381 cccgaccggc ttgtcggaga gcatgttgcg cgcctcgtcc tgatcgagcg cggcaaagcc
     1441 gcgcggcttg tcgagatcgg aggcgatctt ggccaggaac ttgttgcagg aaagcccgac
     1501 cgacaccgtg atgccgatct tgctttcgac gtcgcgggca aagcgcgcca gcacctttgc
     1561 cgggggcatg ccgtgaacac gctgggtgcc ggagagatcg agaaaagcct cgtcgatcga
     1621 cagcggttcc accagcggag tcagcgcctg catggcctgg cgcacctcgc ggccgacccg
     1681 gacatacttt gccatgtcgg gaccgatcac gacggcgtgc gggcagagcg ccagggcttt
     1741 gaacatcggc atcgccgaac gcacgccata ggtccgagcg atgtagcagg cggccgacac
     1801 cacaccgcgc ttgccgccgc cgatgatgac aggcctgtcg gcgatctcag gattgtcgcg
     1861 cttctcgacg gtggcataga aggcatcgca atcgatatgc gccagcgaga gcgagggcag
     1921 ggcatggtgg cggaccaggc gcggcgagcc gcaacgggcg cagcgcttgg cgctgaagtc
     1981 gagatcgtcg agacaatccc ggcaaaagca gcgggggccg tcgaacgccg gtgccgcgct
     2041 actgctcacg gcacgtcgcg ttcccagtga ggatcgccca gcacctgacg tgccgccgcg
     2101 atgttggtcg gatggagttc cgaggcggcg gcgaaggccc ttacggtggc gtcatcccgc
     2161 atcacgaaat cgagcaccgc tcccaggaat ttggggtcgg cagccgccgt ccgcagcgtc
     2221 tccgggccga ttcccgtctc ggccaggaat aggcccagcc gctcggggtc gccggcaacg
     2281 aagccaagcg cctgaaccgc aacaatttca gctacttcgc gggggttttg aacaggcttt
     2341 ttcaactgat cggtttgcct ttccgttaac ttatggtctc taatgagagg gccatcatgc
     2401 ccgagtcttt cgaac
//
LOCUS       DASQVK010000150         2005 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_168110,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000150 DASQVK010000000
VERSION     DASQVK010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2005
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168110"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..361)
                     /locus_tag="VE567_03175"
     CDS             complement(<1..361)
                     /locus_tag="VE567_03175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006833924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYZ47876.1"
                     /translation="MGLREPLAQIAAECSLPRALEAMGERWSFLILRAAFNGLKHFEE
                     IQSNLGIARNILANRLGRLVDAGILTREPCPEDRRKIEYRLTEKGLDLLPTMIALRQW
                     GEKWETCTPSNPVLVDKR"
     gene            503..838
                     /locus_tag="VE567_03180"
     CDS             503..838
                     /locus_tag="VE567_03180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47877.1"
                     /translation="MVRLSASFLALVGSFTLLGSAAIAQPGGQFYQVTLASQPEAARQ
                     IVRGMAFACSGGTCTGAEGTSRPAIVCASIARELGPVTAFRAGGEALDGAALAKCNEK
                     ANTAKIARR"
     gene            973..>2005
                     /locus_tag="VE567_03185"
     CDS             973..>2005
                     /locus_tag="VE567_03185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HYZ47878.1"
                     /translation="MLRQYELVERVKSYDPDADEALINRAYVFSMQAHGTQKRASGDP
                     YYSHPIEVAGILTDLHLDDETIATAILHDTIEDTVATHEEIEAKFGANVARLVDGVTK
                     LSKIEAQTENQRAAENLRKFLLAMSDDIRVLLVKLADRLHNMRTLHFIKDEAKRRRIA
                     KETMDIYAPLAERIGMYEFMKEMQTLAFRELEPEAYQSITKRLRQLHEGGGDRIARIA
                     SGLRLLLSRNGIESEVTGREKHPYSIWRKMAERHISFEQLSDVMAFRMIVPSTQDCYK
                     ALGVIHGRWPMVPGRFKDYISTPKRNGYRSLHTSVIHAENMRIEIQIRSKDMHAQAEF
                     GLAAHWAYKQ"
BASE COUNT          400 a          639 c          608 g          358 t
ORIGIN      
        1 cgcgcttgtc gaccagcacc gggttggacg gcgtgcacgt ctcccacttc tcgccccatt
       61 ggcgcagcgc gatcatcgtc ggcagcaggt ctaggccctt ttccgtcagc cgatattcga
      121 tttttcggcg atcttcgggg cagggctcgc gcgtcaaaat tccggcatcc accagccggc
      181 cgagccggtt ggcgaggatg ttgcgcgcaa tgccgagatt tgactggatt tcctcgaagt
      241 gcttgagccc gttaaaggcc gcgcgaagga tcaggaacga ccagcgctcg cccatcgcct
      301 cgagtgcgcg cggcaggctg cactcggcgg cgatttgcgc aagcggttct cttaagccca
      361 ttgatcctct tcctgaccgg aaaacctagt ccagaccaat cggttcatcc aactggaaaa
      421 tgaagtttca gtttttagtt gcaacttgca acctaataac gtaagtagcg attcgcaact
      481 gaaaacgaaa gggacggaaa ccatggtcag actttcagct tcattcctcg cgctggtcgg
      541 ctccttcacg ctgctcggct cggcagcgat cgcgcagccg ggcggccaat tctaccaggt
      601 cacgctcgcc agccagcccg aagcggccag gcagatcgtg cgcggcatgg ccttcgcttg
      661 tagcggcggc acctgcaccg gcgccgaagg caccagccga ccggcgatcg tctgcgccag
      721 catcgctcgc gaacttgggc cggtcaccgc ctttcgcgcc ggcggagagg cgctggacgg
      781 cgccgcgctc gccaagtgca acgaaaaggc gaacacggcg aaaatcgccc gccgctgatc
      841 cgttcgagcg gacacctttc ctcgcgatcg tccgcacacc gccgccggag ccctcccctg
      901 gctccggcgg ttgttttttg ccgtcgacat tcatctgttg cgttgcggca cgcggtcgcc
      961 aatcttgggc gggtgttgag gcagtatgaa ctggtcgagc gggtcaaaag ctatgatccc
     1021 gatgccgatg aggcgctgat caatcgcgct tatgtatttt ccatgcaggc gcacgggacg
     1081 cagaagcgtg cgtcgggcga tccctattac agccacccga tcgaggtcgc cggcatcctg
     1141 accgacctcc atctcgacga cgagacgatt gcgaccgcga tcctgcacga cacgatcgag
     1201 gacacggtcg ccacccacga ggagatcgag gccaaattcg gcgccaatgt cgcgcggctg
     1261 gtcgacggcg tcaccaagct cagcaagatc gaggcgcaga cggagaacca gcgcgcggcg
     1321 gagaatctgc gcaagttcct gctggcgatg tcggacgaca tccgcgtgct gctcgtcaag
     1381 cttgctgacc ggctgcacaa catgcgcacg cttcacttca tcaaggacga agcgaagcgc
     1441 cggcggatcg ccaaggaaac catggacatc tacgccccgc tcgcggagcg gatcggcatg
     1501 tacgagttca tgaaggaaat gcagacgctc gcgtttcgcg aactcgagcc cgaggcatat
     1561 cagtcgatta ccaagcgcct ccggcagctc catgaagggg gcggggaccg gatcgcccgc
     1621 atcgcgtcgg ggctgaggct cctgctttcg cgcaacggca tcgaaagcga agtgacgggc
     1681 cgcgagaagc acccctattc gatctggcgc aaaatggccg agcgccacat cagcttcgag
     1741 cagctctccg acgtgatggc atttcgcatg atcgtgccgt cgacgcagga ttgctacaag
     1801 gcgctagggg taatccatgg ccgctggccg atggtgccgg ggcgcttcaa ggattatatc
     1861 tcgacgccca agcgcaacgg ctatcgctcg ctccacacca gcgtcatcca tgccgagaat
     1921 atgcggatcg agatccagat ccggtcgaag gacatgcacg cccaggcaga gttcggcctg
     1981 gccgcgcact gggcctacaa acagg
//
LOCUS       DASQVK010000151         6356 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_10048, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000151 DASQVK010000000
VERSION     DASQVK010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6356
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10048"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            208..1158
                     /locus_tag="VE567_03190"
     CDS             208..1158
                     /locus_tag="VE567_03190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008067636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase
                     domain-containing protein"
                     /protein_id="HYZ47879.1"
                     /translation="MLATILGLALAAWTFGVNGWRDIVGVAARMGVAGFLLVCVYSVF
                     TFAMLGAAWVAAASEAPARLALFTWGRLVREAASDLLPFSQIGGIVIGMRTLVARGIP
                     PARAYASFVVDLTTEMAAQLLFTIFGLALMATILVGDGADLLRPAILGGTGILAAMIL
                     AIFLGQRALLAFATRLAHRFVPGSAAAMADIETELARLYGRRRSVALALLLNLAAWVQ
                     SAAGAWLILKLVEIPFSFWAALSLESLIFTLRSVAFAIPGALGVQEVAYALAGPLFGL
                     GPEAALALALAKRARDLTVALPTLIVWQASETRAILKGAR"
     gene            1297..2856
                     /locus_tag="VE567_03195"
     CDS             1297..2856
                     /locus_tag="VE567_03195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYZ47880.1"
                     /translation="MTAVFLDRRANWAFVLGSLAVTIGVAMHLPMFLMARGMGYRLAG
                     MPVGLDMIAAMALIVAGVLVAAFGLLPRPPAPGFDDRSIEVVAPEDAHLGGQHWKLMA
                     ALVVALVIDVMKPASLGFTIPGMVAEYGVPKAAVSLVPFFALAGTVTGSVIWGALADI
                     YGRKATILLSAVMFVGTSICGAMPSLQWNIAMCFMMGAAAGGMLPVTYALLAEMMPSR
                     HRGWSLVLVGGLGAVGGYFAASGISALLQPMLGWRILWLANLPTGLILIALGGLFPES
                     AKFLMARGRTQEAEAVLRRFGAVARTARPKVQAEASIPLAGLTGPQLFGKLAALSIAA
                     LSWGLVNFGVLLWLPADLVARGYSVGLASRLIAESALIACPTVFVAALLYSRWSTKWS
                     LAASIVAMLFGLVATLAMEAGRIGPVLPVALLIVGSNGLLAILLPYTAESFPLRVRGR
                     ATGWVAACTKGGGLLAQAFAIAAIQPELGTAAIAIALPSAAALLLVARFGRETRGRDL
                     RELDDAAFQHV"
     gene            complement(2984..3634)
                     /locus_tag="VE567_03200"
     CDS             complement(2984..3634)
                     /locus_tag="VE567_03200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020819605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYZ47881.1"
                     /translation="MIELVAGTAAPQTSASAVYVIDDDRDIRSSLVLLLRASGLAARA
                     FGRGEDFLDELDFLQPGCVLLDLRMPEMSGLELLAELRRRDCHWPVVVITGHGDISLA
                     VRAVKLGAIEFLEKPFGEDELKTALGEAFRRLEEAALKSKHSRAARQALDRLTTRERQ
                     VFEGVVRGQTSKEIASNLSLSPRTVESYRLTMMRKLKAQSMYDLLAIATHGVPAQA"
     gene            4048..4506
                     /locus_tag="VE567_03205"
     CDS             4048..4506
                     /locus_tag="VE567_03205"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HYZ47882.1"
                     /translation="MLKTRDPRLSVLVPAQLRAGSGWAAAWVHNVSRRGMMLSCAMPP
                     ELGSFIEIRLDEACYAAKIVWVRDQRFGVRTREAVQLAADAAAALAPGTKAAGSRKSP
                     DQKWADARATGRLVEFTAAAAIGALLAAAAAALSWYTLASVVAKIEQQLL"
     gene            4621..>6356
                     /locus_tag="VE567_03210"
     CDS             4621..>6356
                     /locus_tag="VE567_03210"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEDS domain-containing protein"
                     /protein_id="HYZ47883.1"
                     /translation="MGDTTPSGIAAIGDLSRGSHFCQFYETEDDHVATIADYFRAGSK
                     ANELCLWLTSAPLTPGYAQAKLLHASPELEPALAEGAIEIVQADEWYLRGQQFRADIV
                     VESWDRKLGWALAQGYAGLRVAANEAWLSHKLWHEFAEYECSLNAALAGKQMVVLCCY
                     PLLSRTAEEVFEISDSHNFAIACRAGRWQVMESTETVGAGAELQRDNIELRQRIRQRT
                     RQLERANGALVENEELFNSLAEHMSDVISLYDMNGRRVYVSPSHRRVLGWLPDDPFEG
                     IHSSDREAVREAWDRLRAGESQTIRYRYWNAQGHWIWIEARCTPVLFRGSDHVLECQR
                     DITKRVELEKQLHHSQKMEALGRLAGGVAHDINNVLTAIFGYAGLLRKQLADQEGPSA
                     CVHEIRTAAERARQLTRQLLTFARRDVSRPQVIDAAQVARKLERMLRLVVREDVEFIM
                     ETASERLAVHLDPLQLEQILLNLVVNARDATPAGGSIAVRCTLIDSVAAGRDAPALVV
                     AGQYVLITVSDTGVGIPAELVCHVFEPFFTTKDAGKGTGLGLATVFGIVQQAKGYVWI
                     DSEPGRGTTASVL"
BASE COUNT          979 a         2090 c         2097 g         1190 t
ORIGIN      
        1 gcccgtatcc cgggagcgcc cccggctatg cctatgccga agagctggcc gcgcttgcac
       61 aacgcccgct gctgcgcgat gagatcgtgc tcggtcgctt tgcagatttc gccgggaatg
      121 cccgatgagt atcgccgttt ccaacgcgat ccccctggcc cgcggtcgag gagcaagcgc
      181 ctgaaaaact gggcccgcgc aggcattctg cttgcgacca tcctcggtct ggcgctcgcc
      241 gcgtggacgt tcggcgtgaa cggctggcgc gacattgtcg gcgtcgccgc gcgcatgggc
      301 gtcgccggct tcctgctggt ctgcgtctat tcggtcttca ctttcgccat gctgggtgcg
      361 gcctgggtgg cggcggccag cgaagccccg gcgcggctgg cgctcttcac ctggggccgg
      421 ctggtgcggg aagcggcgtc cgacctgctg cctttctctc agatcggcgg catcgtgatc
      481 ggcatgcgca cgctcgtcgc ccggggcatc ccgccggcgc gcgcctatgc ctcgttcgtc
      541 gtcgatctca ccacggaaat ggcggcgcag ctccttttca ccattttcgg cctggcattg
      601 atggcgacga tcctggtggg cgacggcgcg gaccttttgc ggccggcgat ccttggcggc
      661 acgggcattt tggccgcaat gatcctcgcg atcttcctcg gccagcgcgc gctgctggcg
      721 ttcgcgaccc ggttggcgca ccggttcgtt ccgggctcgg cggccgcgat ggccgatatc
      781 gaaaccgagc tggcgcgcct ctacggccga cgcagatcgg tggcgcttgc gctgctgctg
      841 aacctcgccg cctgggtgca gagtgcggcc ggcgcctggc tgatcctgaa gctggtggaa
      901 ataccgtttt ccttctgggc cgccctctcg ctcgaaagcc tgatcttcac gctgcgcagc
      961 gttgctttcg cgattccggg cgcgctgggc gtgcaggaag tcgcctatgc ccttgccggc
     1021 ccgctgttcg gcctcggccc tgaagccgcc ctcgcacttg cactggcgaa gcgcgcccgc
     1081 gacctgacgg tcgcgctccc cacgctgatc gtctggcaag cctccgaaac ccgcgcgatc
     1141 ctgaaaggcg cgcggtgaag ctgcgatcga gcagccccga cgccctcttg cgattcgaat
     1201 agacgccgcg ccgcaaatgt tgttgtcatg aaatgacggc acccaagatg cgggaaccac
     1261 gaaaatgacg ggacaggccg gaatccaggt gctttcttga cggcggtttt cctcgacagg
     1321 cgcgccaatt gggctttcgt gctgggttcc ctggcggtca ccattggcgt cgccatgcat
     1381 ttgccgatgt tcctcatggc ccgcggcatg gggtatcggc tggccggcat gccggtgggc
     1441 ctggacatga tcgccgcaat ggcgctgatc gtggccggcg tgctcgtcgc cgctttcggg
     1501 ctgctcccgc gcccgcccgc gccgggtttc gacgaccgct cgatcgaagt ggtcgcgccc
     1561 gaggatgcgc atcttggcgg ccagcattgg aagctgatgg cggcgctcgt ggtcgcgctg
     1621 gtgatcgacg tgatgaagcc ggcatcgctg ggcttcacca ttccgggcat ggtcgccgaa
     1681 tatggcgtgc cgaaagccgc ggtctcgctc gttcctttct tcgcgctcgc cggcaccgtc
     1741 accggctccg tgatctgggg cgcgctcgcc gatatttatg ggcgcaaggc gaccatcctg
     1801 ctgtcggcgg tgatgttcgt cggcacgtcg atctgcgggg ccatgccatc gctccaatgg
     1861 aatatcgcga tgtgcttcat gatgggtgcc gcagccggcg gaatgctgcc cgtcacttat
     1921 gcgctgctcg ccgaaatgat gcccagccgg caccgcggct ggagcctcgt gctggtcggc
     1981 ggcctgggcg cagtcggggg ctatttcgcg gcgagcggaa tttcggcgct gctgcagccg
     2041 atgctcggct ggcggattct ctggctcgcc aatctgccga ccgggctgat cctgatcgcc
     2101 ctgggcggac tgttccccga gtccgcaaag ttcctgatgg cgcgcggccg cacccaggaa
     2161 gcggaggccg tgctccgccg cttcggcgcg gtcgcccgta ccgcgcggcc caaggttcaa
     2221 gccgaagcgt ccatcccgct cgcgggcctt accggtccgc agctcttcgg caagctcgcc
     2281 gcgctcagca ttgcggcgct cagctggggg ctggtgaatt tcggcgtgct gctctggctt
     2341 cccgccgatc tggtggccag gggctatagc gtcggccttg ccagccggct gatcgcggaa
     2401 tcggcgctga tcgcctgccc cactgtgttc gtagcggccc ttctctatag ccgatggagc
     2461 accaaatggt cgctggcggc gagcatcgtc gcgatgctgt tcgggcttgt ggcgacgctg
     2521 gcgatggagg ctgggcggat cgggccggtg cttccggtcg cgctgctgat cgtcggctcg
     2581 aacggcctgc tggcgatcct cctgccctac acggccgaaa gcttcccttt gcgggtccgc
     2641 ggccgcgcga ccggctgggt ggcggcgtgc accaaaggcg gcggccttct cgcccaggcc
     2701 ttcgcgatcg cggcgatcca acccgaactc ggcaccgccg ccatcgccat cgccctgccc
     2761 tcggcggcgg cgctgctgct ggttgcccgg ttcggccggg agacgcgcgg ccgtgacctg
     2821 cgcgagctgg acgacgccgc cttccagcac gtctgacctc tccaggatgg cgccgggcgg
     2881 cgcatcccga cgtcgctcgc gccggccgtc atgagaactg cgaagcgcgc atggaggtat
     2941 gaatgacgcc tgtctcctca gcgcgcggcg ttgcgccggg caatcaggcc tgcgcgggca
     3001 ctccatgcgt agcgatggcc agcaggtcat acatgctctg cgccttcagc ttgcgcatca
     3061 tggtcaatcg gtatgattcg acggtccgcg ggctgaggct gaggttcgag gcgatttcct
     3121 tgctcgtctg gcccctgacg acgccctcga acacctggcg ctcgcgcgtc gtcagccgat
     3181 cgagcgcttg ccgggccgca cgggagtgtt tggatttaag cgccgcttct tccagccggc
     3241 ggaacgcctc gccgagtgcg gttttcagct catcctcgcc aaaaggcttt tcgagaaact
     3301 cgatcgcgcc cagcttcacg gcgcgaacgg cgaggctgat atcgccatgg ccggtgatga
     3361 ccacgaccgg ccagtgacag tcgcgacgcc gcagctcggc caggagttcg aggccggaca
     3421 tttccggcat ccgaaggtcc agcaatacac aaccgggctg caggaaatcg agctcgtcca
     3481 gaaaatcctc gcctcgcccg aacgcgcgtg ctgcgaggcc gctcgcgcgc aggagcagga
     3541 ccagcgacga ccggatatcc cgatcgtcat ctatgacata gacagccgat gcagatgtct
     3601 gcggtgccgc ggtccctgcc acaagctcga tcatggcgtc cttttgcacc gggaatatcg
     3661 atgtcgcact accgtattga tactgcagta ctcccacttt agggtaaata accccatagt
     3721 tagtcacgca ctatagtgag gcatggaatc gcgcatagct cccggagctt gcgcgaagct
     3781 gacgggaggg catggtagcg ggaagacgat cctgccggga gaggagattt caatgcagag
     3841 atatcgggtg gagctcgtcg atcgtctcgg ccgttccgtc tcttttatcg aagtttcggc
     3901 ggtaagcgaa tattcggccg ctcagcacgg acggcgctgt ttcgggcttc tcccgaagct
     3961 tcgcatccag gtgaggcttt tggcgccatc gccgtcggtc cagccccgaa tgcgggaatc
     4021 ggctatcgtt cgcgccgcct gatccgagtg ctgaagactc gcgatcctcg attgtcggtt
     4081 ctggttccgg cccagctccg cgctggttcg ggatgggctg ccgcctgggt gcacaacgtg
     4141 tcccggcgcg gcatgatgct gtcctgcgca atgccgccag agctgggcag cttcatcgaa
     4201 atcaggctgg atgaggcctg ctatgcggcc aagatcgtct gggtacgcga ccagcggttc
     4261 ggggtgcgga cgcgcgaggc ggttcagctc gccgccgatg ctgcggccgc ccttgccccg
     4321 ggcaccaaag cggccggatc ccgcaaaagc ccggatcaga aatgggcgga tgcacgcgcg
     4381 accggccgtc ttgtcgagtt tactgcggcg gcggcgatag gcgcgctgct cgctgcggct
     4441 gccgccgctc tatcgtggta cacattggcg tcggtcgtgg cgaagatcga gcagcagctc
     4501 ctgtgagcgc agccgcggga cgcgggtcga agaatttgct acgccgcttc tgagggtgcg
     4561 actcacaggg gagacggcag catggcttct tcgacgcccg attctgcggc tgtttcggcc
     4621 atgggcgaca ctacgccctc gggcattgcc gcgattggcg acctctcccg gggctcccat
     4681 ttctgccagt tctacgaaac cgaagacgat catgtcgcca cgattgccga ctattttcgg
     4741 gccggctcca aggcgaatga gctctgtctt tggctgacat cggcgccgct cacgccgggc
     4801 tacgcccagg cgaaactcct ccacgcctct ccggaacttg agccggcgct ggcggaggga
     4861 gcgatcgaga tcgtccaagc ggatgagtgg tatcttcggg ggcagcaatt ccgcgccgac
     4921 atcgtcgtgg agtcatggga ccgcaaactt ggctgggcct tggcgcaggg ctatgccggc
     4981 ctgcgcgtcg ccgcgaacga ggcttggctg agccataagc tctggcacga attcgccgaa
     5041 tacgagtgca gcctgaacgc cgcgctggcg ggaaagcaga tggtcgtcct gtgctgctat
     5101 ccgctgctga gccggacggc ggaggaagtt ttcgagattt ccgacagcca caacttcgcc
     5161 atcgcgtgcc gggcggggcg ctggcaagtc atggaaagca ccgaaaccgt cggtgccggc
     5221 gccgagctgc agcgcgacaa tatcgagctc aggcagcgga tccgtcagcg aacccggcaa
     5281 cttgaacgcg caaacggcgc gctggtcgaa aacgaggagc ttttcaactc gctcgccgaa
     5341 catatgagcg acgtgatcag tctctacgat atgaacggtc ggcgggtcta tgtcagcccg
     5401 tcacaccggc gcgtgctcgg ctggcttccc gacgatccct tcgagggaat ccatagctcg
     5461 gaccgagagg cggtgcgcga ggcgtgggac cggttgcgcg cgggggagtc gcagacgatc
     5521 cgctatcgct actggaatgc acagggccat tggatctgga tcgaggcgcg gtgcacgcct
     5581 gtcctgttcc gcgggagcga ccacgtcctc gaatgccagc gcgacatcac caagcgcgtc
     5641 gagctcgaga aacagcttca ccattcgcag aaaatggaag ctctgggccg gcttgccggc
     5701 ggcgtcgcgc acgacatcaa caacgtcctt acggccatct tcggctatgc gggcctgctg
     5761 cgcaagcagc tggccgacca ggaagggccg tccgcctgcg tccacgagat tcgaacggcc
     5821 gccgagcgtg cccgccaact gacccgccag ctgctcactt tcgcccggcg cgacgtcagc
     5881 cgcccgcagg tcatcgacgc cgcgcaggtc gcccgcaagc tcgagcggat gctccgactg
     5941 gtcgtgcgcg aggacgtgga gttcattatg gaaaccgcgt ccgagcgcct ggccgtgcac
     6001 ctcgacccgc tccaactcga acaaatactc ctaaacctcg tcgtaaacgc ccgggacgca
     6061 acaccggcgg gcggcagcat cgcagtgcgc tgcacgctga tcgactcggt cgcagccgga
     6121 cgggatgcgc cagccctcgt cgtggccggg caatatgtcc ttatcaccgt ttccgatacc
     6181 ggcgtcggca ttccggccga actggtgtgc catgtcttcg aacccttttt cacgaccaag
     6241 gacgctggca agggaaccgg ccttggcctc gccaccgtgt tcggcatcgt ccagcaggct
     6301 aagggctatg tgtggatcga cagcgaaccg ggccgcggca ccaccgcgtc ggttct
//
LOCUS       DASQVK010000152         3520 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_10050, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000152 DASQVK010000000
VERSION     DASQVK010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3520
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10050"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1143
                     /locus_tag="VE567_03215"
     CDS             <1..1143
                     /locus_tag="VE567_03215"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD-GYP domain-containing protein"
                     /protein_id="HYZ47884.1"
                     /translation="FWRTRFVIETERDLTRVRESGVTAVVIDDSRSLAPSTPPRPRTD
                     WQPPSRPAAPQPRSAPAVLRRAIFQPGFGANYAQATRLFTRSKRMMSSTFSDVRLGKA
                     IKAERLEPLIAEITASIDQNPRAFISIAQLKNRHEYTYMHSIAVCALMINLARELRFN
                     ENAVREAGMAGLLHDIGKAVMPLEILDKPGALSDNEFGVMKTHPTRGHELLSKSSGVC
                     YNALDVCLRHHERFDGNGYPEGLAGDRLSLFARMGALCDVYDAVTSERAYKRPWTPSE
                     AVARMREWSGHFDPEMFEIFVKSVGVYPVGGLVRLKSGRAAMVKGENPDDPTRPPLVS
                     IPDEEHSLGEPIDPSADEIVGMESAETLQLENWESRRAQIVRRLRA"
     gene            complement(1153..3213)
                     /gene="recG"
                     /locus_tag="VE567_03220"
     CDS             complement(1153..3213)
                     /gene="recG"
                     /locus_tag="VE567_03220"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010338015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HYZ47885.1"
                     /translation="MRPEILNPLFAEVEALKGIGPSLKRPLERLGLKRAVDVAFHLPT
                     GWIDRKQVERLDVEDVGRVITIPLTPVDYRQSGSGRGPFRVHATDAGGNYVSLIYFGG
                     NPGWAKKLLPLGESRIVSGKLESYGQELQIVHPDLVLKPGETLPAAREPIYPLSEGIT
                     SRRLHQLAEQAIERAPELPEWIEPSVLGQRAWLPWRVSLAAVHADPADQAARCRLAYD
                     EVFANQLALMLVRASTRKRQGQPLQGDGRLRDQLNLPYSPTGAQRRAVAEIEGDMAQQ
                     SPMLRLLQGDVGSGKTLVALMALLVAVEAGVQGALLAPTEILARQHHASLSRMLAGLP
                     VNVAILTGREKGRARDSTLMGLADGSIDILVGTHAIFQQSVSYKRLGLAVVDEQHRFG
                     VSQRLMLSQKAERPPHLLAMTATPIPRTLTLTHYGEMDVSRLDEMPPGRQPIETRVIS
                     DERLLEVVDGLGRHVEKGGQAYWVCPLVEESEKSDLAAAEERAVALRLRFGDRIGLVH
                     GRMKGPDKDAVMAAFASGRLSVLVATTVIEVGVDVPNATLMIIEHADRFGLAQLHQLR
                     GRVGRGEGKSVCLLLRSGQLSETARARLALMRETNDGFRIAEEDLKLRGPGELLGTRQ
                     SGEHVFKLASPELLNELLPIASQDARLLVDRDGGLEGPRGQAARLALYLFERDAGVNL
                     LRSG"
     gene            3288..>3520
                     /locus_tag="VE567_03225"
     CDS             3288..>3520
                     /locus_tag="VE567_03225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HYZ47886.1"
                     /translation="MDRETRLKRLRFRAWHRGTKEADLMIGGFFDTHAAGWNDEQIGW
                     FEALMNEQDVDIMAWAVGTQPIPESWQGAMMSA"
BASE COUNT          603 a         1191 c         1152 g          574 t
ORIGIN      
        1 ttctggcgca cccgcttcgt aatcgaaacc gagcgggacc tgacaagagt ccgggaaagc
       61 ggcgtcacag cggtcgtgat cgatgattcg cggagcttgg cgccctccac gccgccccgc
      121 ccccggaccg actggcagcc accgagccgg ccagccgcgc cacagccgcg gagcgcgccg
      181 gccgtgctcc gccgggccat cttccagccc ggcttcggtg ccaattacgc tcaggcgacg
      241 cggctcttca cccgctccaa gcgtatgatg tcgagcacgt tttcggatgt gcgcctaggc
      301 aaggcgataa aggcggaacg cctggagccg ctgattgccg aaatcaccgc ttcaatcgac
      361 cagaatccgc gtgccttcat cagcatcgct cagctgaaga accggcacga atatacctac
      421 atgcactcga ttgcggtctg cgcgctcatg atcaatctcg cccgtgagct gcgtttcaac
      481 gagaatgccg tgcgcgaagc cggcatggcg ggattgctgc atgacattgg caaggcagtg
      541 atgcctttgg agatcctcga taagcccggc gcgctgagcg ataatgaatt cggcgtgatg
      601 aagacccacc cgacgcgcgg ccacgagctg ctctcgaaga gcagcggcgt ttgctacaac
      661 gcgctcgatg tctgcctgcg tcaccacgaa cgcttcgacg gcaacggcta tcccgagggg
      721 cttgcgggcg accggctgag cctgttcgcg cggatgggcg cgctatgcga cgtctatgac
      781 gcggtgacat ccgagcgcgc ctataagcgc ccctggacgc cgagcgaagc cgtcgcgcgg
      841 atgcgcgaat ggtccggcca tttcgatccg gagatgttcg agatcttcgt gaagagcgtc
      901 ggcgtctatc cggtcggggg gctggtgagg ctgaagtccg gccgcgccgc aatggtgaag
      961 ggcgagaatc ccgacgaccc gacgcggccg ccactggtct cgatcccgga cgaggagcat
     1021 tccctgggcg aacccatcga cccgtcggcc gatgaaatag tgggcatgga atccgccgaa
     1081 acactgcagc tcgagaattg ggaaagccgc cgcgcccaga tcgtcaggcg cttgcgcgcc
     1141 tgagctgaat gctcagccgc tacgcagcag gttcacccca gcatcccgct cgaacaaata
     1201 gagcgccagc cgcgccgcct gtccgcgcgg gccctccagg ccgccatcgc gatcgacgag
     1261 caggcgtgcg tcttgggagg cgatcggcag cagttcgttc agcagctccg ggctcgcgag
     1321 cttgaacaca tgctcgcccg actggcgggt gccgagcaat tcgccggggc cgcgcagctt
     1381 cagatcctct tcggcgatgc ggaagccgtc attggtttcg cgcatcagcg cgaggcgcgc
     1441 ccgcgcggtc tcgctgagct ggccggagcg gaggagcagg cagacggatt tgccctcccc
     1501 tcgtcccacg cgcccgcgca attggtgaag ctgagccagc ccgaaccggt cggcatgctc
     1561 gatgatcatc agcgtcgcat tggggacgtc gacgcccacc tcgatgacgg tggtggcgac
     1621 gagtacggag agccggccgc tcgcgaacgc cgccatcacg gcgtccttgt ccggcccctt
     1681 catccgcccg tgcacaaggc cgatgcgatc gccgaagcgc aagcggagcg cgacggcgcg
     1741 ctcctcggcg gcggcgaggt cgctcttctc gctctcttcg accagcgggc acacccaata
     1801 ggcctggccg cctttctcga catggcggcc gagcccgtcc accacttcca gcagccgctc
     1861 gtcggagatc acgcgtgtct cgatcggctg gcgccccggc ggcatctcat cgagccggct
     1921 cacgtccatc tcgccataat gagtgagcgt gagcgtgcgc gggatcggcg ttgcggtcat
     1981 cgccagcagg tggggcggcc gctcggcctt ctggctcagc atcagccgct gcgagacgcc
     2041 gaagcggtgc tgttcgtcga cgacagcaag gccgagccgc ttgtagctca cgctttgctg
     2101 gaaaatcgcg tgcgtgccga cgagaatgtc gatcgagccg tccgccaggc ccatcagcgt
     2161 cgaatcgcgc gccctgccct tctcgcgccc ggtcaggatc gcgacgttga ccggcaggcc
     2221 ggcgagcatg cggctgagcg atgcgtgatg ctggcgcgcg aggatctctg tcggggcaag
     2281 cagggcaccc tgcacgcccg cttccaccgc gaccagcagc gccatcagcg ccaccagcgt
     2341 cttgcccgat ccgacatcgc cctggagcag ccgcagcatc ggcgattgct gcgccatatc
     2401 gccttcgatc tcggcgaccg cccgccgctg cgccccggtc ggcgaatatg gcagattcag
     2461 ctggtcccgt agccggccat cgccttggag cggctggccc tggcgcttgc gggtcgaggc
     2521 gcggaccagc atcagcgcga gctggttggc gaagacttcg tcataagcga gccggcagcg
     2581 cgccgcctga tcggccggat cggcatgcac cgccgcgagc gacactcgcc acggtagcca
     2641 agcgcgctgg ccgagcacgc tcggctcgat ccattcgggg agctcgggcg cccgctcgat
     2701 cgcctgctcc gcgagctggt gcagccggcg cgaggtgatg ccttcggaca gaggatagat
     2761 cggctcgcgg gcggccggca gcgtttcgcc gggcttgagc acaaggtccg ggtggacgat
     2821 ctgcagttcc tgcccatagc tttcgagctt gcccgagacg atccgcgact cgcccagcgg
     2881 caggagcttt ttcgcccagc cggggttgcc gccgaaatag atgaggctga cataattgcc
     2941 gccggcgtcg gtcgcatgca cgcggaaagg tccccgcccg ctgccggact ggcggtaatc
     3001 gaccggggtg agcgggatcg tgatgacgcg gccgacatcc tcgacgtcca ggcgctcgac
     3061 ctgctttcga tcgatccagc cggtcggcaa gtgaaaggcg acatcgacgg cgcgcttaag
     3121 ccccaagcgc tcgaggggcc ttttcaggct tggcccgatc cctttcagcg cctccacttc
     3181 ggcgaacagc ggattgagga tttcgggtcg catgcctaag tgcgatctct aaccacattg
     3241 ccggagcgcc cgccagcgct gtccggctac cgcctattgg agccggaatg gaccgcgaga
     3301 ctcgcctgaa acgcctgcgc ttccgcgcct ggcatcgcgg caccaaggaa gccgacctca
     3361 tgatcggggg ctttttcgac acccatgccg cgggttggaa cgatgaacag atcggctggt
     3421 tcgaggcact catgaacgaa caggacgtcg acatcatggc ctgggcggtc ggcacccagc
     3481 ccatccccga aagctggcaa ggcgcgatga tgagcgcaat
//
LOCUS       DASQVK010000153         2114 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_263280,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000153 DASQVK010000000
VERSION     DASQVK010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2114
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263280"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..315
                     /locus_tag="VE567_03230"
     CDS             <1..315
                     /locus_tag="VE567_03230"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYZ47887.1"
                     /translation="VRKLDEFLAQNADKAVYSMDIARQLGVSVRTVHNAVVAIRGMSL
                     HRYSRLRRLWNVRRQLVLGSDVTRIKAAALANGFWHMGEFARQYRAAFGETPQQTRQR
                     CC"
     gene            652..1362
                     /locus_tag="VE567_03235"
     CDS             652..1362
                     /locus_tag="VE567_03235"
                     /inference="COORDINATES: protein motif:HMM:NF028224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator
                     C-terminal domain-containing protein"
                     /protein_id="HYZ47888.1"
                     /translation="MKDASATARSSDPKHAVRATRLAGRQMRSRLLDAASRLFRERGL
                     AAVSIADIAAAADAFPSQITYYFRTKEALFVEAACREALYVARAAEQHAGKQLSPSDY
                     TRALVESVMASDALGLFVEAMTLTRRRQDLAPLIERTVERLHAEGLRAYAAEMAARGW
                     QTRLDPATSARRFWTIAIGVTLEGQAMGRGPEALAAEMLRLLGPQADASPGAARLKLV
                     GAEHSASDTSPAGKEKQP"
     gene            1359..>2114
                     /locus_tag="VE567_03240"
     CDS             1359..>2114
                     /locus_tag="VE567_03240"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016717 - oxidoreductase activity, acting
                     on paired donors, with oxidation of a pair of donors
                     resulting in the reduction of molecular oxygen to two
                     molecules of water [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase family protein"
                     /protein_id="HYZ47889.1"
                     /translation="MTALRIRARDLMSEQELVEVRTRITWKSVALIVHAWTLIFGSIA
                     MVAAWPNPLTFVLAVMVIGSRQLGLAILMHDGAHGCLANGEKLNMTLSQWFCAYPVFA
                     ETRAYRRYHLQHHARTQQPDDPDLILSAPFPITRPSYRRKFWRDISGQTGYAQRKAQL
                     LNALGGPSWPWAQRLADFWSKLGPQFVVNGLLWAGLAAAGVWWAYPLLWLLPLMTWMM
                     VITRIRNIAEHAVVPDSDDPLRNTRTTQANLLER"
BASE COUNT          349 a          710 c          685 g          370 t
ORIGIN      
        1 gttcgcaagc tcgacgagtt cctggcgcag aatgcggaca aggccgttta cagcatggat
       61 atcgcccggc aactcggcgt ttccgtacga accgtgcata acgccgtcgt cgccattcgc
      121 ggcatgagcc tgcaccgcta ctcccggctg cggcgattgt ggaacgtgcg ccgccagctt
      181 gtgcttggat cggacgtcac caggatcaag gcggccgcgc ttgcgaacgg attctggcac
      241 atgggcgaat tcgcccggca gtatcgcgcc gccttcggcg aaacaccgca gcagacccgg
      301 cagcgttgct gctgaccgcg ctagcggcgg cggtcgaaga acagagcgtc gtcaccggcg
      361 agatacgacg ctcgcggctt tcagggaccg gttgcgcgac cacgcctagt ctgccaacga
      421 tggcgataga caaaccggag ccctcaccgg gtgccgctcc tctccaagcg ccaaccgcgc
      481 gtccgcgcgt cctcaatctt accgctttct ttccggcctt ggtcgaccgc ggcgcgacag
      541 ctcgttgccg cgcctggaag tcaatctcct gagaactaaa ggtgttttct gtccttgaca
      601 tatttgtttg tatgacatac aagcaagctg accgtgcagt gacgagggcg catgaaggac
      661 gcttccgcga cagcccgttc gagcgatccg aagcacgccg tgcgcgccac gcggctggcg
      721 ggccggcaga tgcgctcgcg gctcctggat gcggcgagcc ggctgttcag ggaacgcggg
      781 cttgccgcgg tttcgatcgc cgatatcgcg gccgcggccg acgccttccc cagccagatc
      841 acctattatt ttcgcaccaa ggaagcgctg ttcgtcgagg cggcgtgccg cgaggcgctg
      901 tacgttgcgc gtgcggccga gcagcacgcc ggcaagcagc tctcgccatc ggactacacg
      961 cgcgcgctgg tcgagagcgt gatggcgtca gacgcgctag gcttgttcgt cgaagcgatg
     1021 acattgaccc gccgccgcca ggatctggcg ccgctgatcg agcgcaccgt tgagcggctg
     1081 cacgccgagg gcttgcgcgc ctatgccgcc gagatggcgg cgcgcggctg gcagacccgg
     1141 ctcgatccgg caaccagcgc gcggcgtttc tggacgatcg cgatcggcgt cacgcttgaa
     1201 ggccaggcga tggggcgcgg gcccgaggcg ctcgccgccg agatgctgcg cctgctgggc
     1261 ccgcaggccg atgcgtcgcc cggcgcagca cggctcaagc tcgttggcgc cgagcattca
     1321 gcatccgaca cttcgcccgc aggcaaggag aaacagccat gaccgcgctt cgcatccgtg
     1381 cccgcgactt gatgagcgaa caggaactgg tcgaggtacg gacgcgcatc acctggaaga
     1441 gcgtcgcgct gatcgtgcat gcatggaccc tgattttcgg ctcgatcgcg atggtggcgg
     1501 cctggcccaa tcccctcacc ttcgtgctgg cggtgatggt gatcggctcg cgtcagctcg
     1561 ggcttgcgat cctgatgcat gacggcgccc atggctgtct cgccaatggc gagaagctga
     1621 acatgacgct gagccaatgg ttctgcgcct atcccgtctt cgccgagacc cgcgcctatc
     1681 gccgctatca tctgcagcac catgcgcgca cgcagcagcc cgacgacccc gatctgatcc
     1741 tctcggcgcc gtttccgatc acccggccga gctaccgccg aaagttctgg cgcgacatct
     1801 cgggtcagac cggctatgcg cagcgcaagg cgcagctgct caacgcgctc ggcggaccgt
     1861 cctggccgtg ggcgcagcgg cttgcggatt tctggagcaa gctcggcccg caattcgttg
     1921 tcaacggcct gctctgggcc ggcctcgcgg cggcgggcgt ctggtgggcc tatccgctgt
     1981 tgtggctatt gccattgatg acctggatga tggtgatcac ccgcatccgc aacatcgccg
     2041 aacatgcggt cgtgccggac tcggatgatc cgctgcgcaa cacccgcacc acgcaagcga
     2101 acctgctcga gcgg
//
LOCUS       DASQVK010000154         2085 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_421642,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000154 DASQVK010000000
VERSION     DASQVK010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2085
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421642"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..966
                     /locus_tag="VE567_03245"
     CDS             <1..966
                     /locus_tag="VE567_03245"
                     /inference="COORDINATES: protein motif:HMM:NF024257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HYZ47890.1"
                     /translation="EKRFEDGFHKYHPGVRFENNLSSTFIGMAALYTGRADLAPMGRR
                     PMWDDLQAYQRVFGTLPVEIVMATGSFDVSGWSFALVPFVHADNPLKSLTIEQLDGIF
                     GAERNGGWKGNSWDPSAARGADKNIRTWGQLGLTGEWADKPIHVLAYTLNFHFSRDFA
                     EKVFNGGYKWNETLVEYSNKVKSTAGGDFGKLWNAGDQMMDDLGKDKYAITYTAMLYA
                     NKPNVKTVPLARTAAGPFVMPTLETVQDRSYPLAREVYFYTNRAPGKKIDPLVAEYLR
                     FVVSREGQAAVMADGKYLPMTPAMARAQLKEIDAVGAASTGDSGG"
     gene            969..2069
                     /locus_tag="VE567_03250"
     CDS             969..2069
                     /locus_tag="VE567_03250"
                     /inference="COORDINATES: protein motif:HMM:NF024257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HYZ47891.1"
                     /translation="MGRRAFLGSAAAALALPARAQRLTPAVQRIDPRPALPDSPAARA
                     VAGMPRYRPEQSVSGAIRLWGHGNRKLPWMHYLVDQWAADFARFHPGAQLDYRLYGTS
                     SGIPALYNGLGDIAMLGEEILPDAARAFERVKGYPPTGIELMTGSMDIRNFDYAQMVF
                     VHRDNPIERVSLVELDAILGTEHRRGARNIRRWGELGLGGAWADRPIVPYSWAIDDSF
                     GFYVQNAVLMGSHRWNPALREFAHITYPDGSIYDHGQQILDALAKDPAGIAVSNIRYA
                     VAEVKPLPLAVTPAGPWIAASDATLIDRSYPLARTLPAVIDRPPDGRIDPKVREFLRY
                     ILSREGQEAVNRDGRYLPLSPTMLEAQRRVLA"
BASE COUNT          376 a          663 c          705 g          341 t
ORIGIN      
        1 gaaaagcgct tcgaggacgg cttccacaaa taccacccgg gcgtgcgctt cgagaacaat
       61 ctgtcgagca cgttcatcgg catggcggcg ctgtacaccg ggcgggccga tctggcgccc
      121 atgggaaggc ggccgatgtg ggacgatctg caggcctatc agcgcgtgtt cgggacgctg
      181 ccggtcgaga tcgtcatggc gaccggctcg ttcgacgtct ccggctggtc gttcgcgctg
      241 gtcccgttcg tccatgccga caatccgctg aagtcgctga cgatcgagca gctcgacggc
      301 attttcggcg ccgagcgcaa cggcgggtgg aagggcaata gctgggaccc gagcgcggcg
      361 cgcggcgccg acaagaacat ccgcacctgg ggccaactgg gcctcacggg cgaatgggcc
      421 gacaagccga tccatgtgct cgcctacaca ctcaatttcc atttctcgcg cgatttcgcg
      481 gagaaggtgt tcaacggcgg atacaaatgg aatgagacgc tggtcgaata cagcaacaag
      541 gtgaagagca cggcaggcgg cgacttcggc aagctctgga acgccggcga ccagatgatg
      601 gacgatctcg gcaaggataa atacgcgatc acctatacgg ctatgcttta cgcaaacaag
      661 ccgaacgtga agacggtgcc gctcgcccgg accgccgcgg ggccgttcgt gatgccgacg
      721 ctcgagactg ttcaggaccg cagctacccg ctcgcccgcg aagtctattt ctacaccaat
      781 cgggcgcccg gcaagaagat cgacccgctg gtcgccgaat atctccggtt cgtggtcagc
      841 cgcgaggggc aggcggcggt gatggcggac ggcaaatatc tgccgatgac tcccgcgatg
      901 gcgcgggcgc agctcaagga gatcgatgcg gtcggggccg cttcgaccgg ggacagcggc
      961 gggtgagatt gggtcggcgc gcctttctcg gcagtgccgc cgccgcgctc gccttgccgg
     1021 cgcgcgcgca gcggctgacg ccggcagtgc agcggatcga tccgcgcccg gcactgccgg
     1081 acagtcccgc cgcgcgcgcg gtcgccggca tgccgcgcta ccggcccgaa cagagcgtgt
     1141 cgggggcgat ccggctgtgg ggccatggca accgcaagct gccgtggatg cattatctgg
     1201 tcgatcaatg ggcggcagac ttcgcccgct tccatccagg cgcgcaactc gactaccgtc
     1261 tttacggcac ttcgtccggg ataccggcgc tctataacgg gctcggcgac atcgcgatgc
     1321 tcggcgagga aatcctcccc gatgccgcca gagcgttcga gcgggtgaag ggctacccgc
     1381 cgaccggcat cgagctgatg accggcagca tggacatacg caatttcgat tatgcgcaga
     1441 tggtgttcgt ccatcgcgac aatccgatcg agcgggtgtc gctcgttgag cttgacgcga
     1501 tcctgggtac cgagcaccgc cgcggcgcgc gcaacatccg ccgatggggc gaactcgggc
     1561 tggggggagc ctgggccgat cggccgatcg tgccctatag ctgggcgatc gacgacagct
     1621 tcggctttta cgtccagaat gcggtgctga tgggcagcca tcgctggaat ccggcgctgc
     1681 gcgagttcgc gcacatcact tatccagatg gatccatcta cgatcacggc cagcagatcc
     1741 tcgatgcgct ggcgaaagat ccagcgggca tcgcggtatc gaacatccgc tatgcggtcg
     1801 cggaggttaa gccgctgccg ctggcggtca cgccggccgg cccgtggatc gcagcgagcg
     1861 acgcgaccct catcgaccgt agctatccgc tggcgcgcac gctgcctgca gtgatcgacc
     1921 ggccgcccga cgggcggatc gatcccaagg tgcgggaatt cctcagatac attctcagcc
     1981 gcgagggcca ggaggcggtg aaccgggacg gccgttacct gccgctgtcg ccgacgatgc
     2041 tcgaagcgca gcggcgggtg ctcgcatgag gatcgccgca ctgat
//
LOCUS       DASQVK010000155         4110 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_453034,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000155 DASQVK010000000
VERSION     DASQVK010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4110
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_453034"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..324)
                     /locus_tag="VE567_03255"
     CDS             complement(<1..324)
                     /locus_tag="VE567_03255"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048609.1"
                     /note="Conjugates Arg from its aminoacyl-tRNA to the
                     N-termini of proteins containing an N-terminal aspartate
                     or glutamate; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HYZ47892.1"
                     /translation="MSAPFRFPRFFVTSPNPCPYLAGKFERKVFTELTGPHAGELNDA
                     LGRIGFRRSQGVAYRPSCADCAACISVRVVADEFRPNGTQRRVLKRNRDLEAIPCRPW
                     ATDEQF"
     gene            complement(441..1685)
                     /locus_tag="VE567_03260"
     CDS             complement(441..1685)
                     /locus_tag="VE567_03260"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HYZ47893.1"
                     /translation="MATASHLSPEPLPVSLADVQAAAARIAGSIVRTPTLHSQTLSQL
                     TGASVWLKFENHQFTAAYKERGALNTLLQLNAEARTRGVIAASAGNHAQGLAYHGQRL
                     GIPVTIVMPQPTPTVKVTQTEGHGASVILEGETFDAAYAHARQLEAERGLTFVHPFDD
                     PRIIAGQGTVALEMLADAPGIDTLVVPIGGGGLFSGMGTAARGLKPGIELIGVQAELY
                     PSMYGAVKHLDLPCEGDTLAEGIAVKHPGALTRRFVEAMADDILLVSERDLERSVSLL
                     LQIEKTVVEGAGAAGLAALLAHPKRFAGREIGIVLCGGNIDTRLLANVLLRDLARSGR
                     LARLRVRLQDRPGALFNVARIFHEQQVNIIEVYHQRVFTTLPAKGLITDIECETRDEA
                     HLKRLIAALRAVPYEVSMVELG"
     gene            1784..3154
                     /locus_tag="VE567_03265"
     CDS             1784..3154
                     /locus_tag="VE567_03265"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HYZ47894.1"
                     /translation="MASNLDLRPASASSEQDAELAAIFAQTAAGLAQVDLEGRFTLVN
                     DCFCEMVGRSREELLTLRMQDITHPDHLPENVPLFERAVREGTPYRIEKRYVRPDGST
                     IWVDNSVTVIRRQEGTPFGILAASIDVTRRREVEDALRASELRLRLAMDAGRMAVWEY
                     DVRAGRILHSSDLNRLLGFIETRQVPYEEFRARIDAGDLELLRSVAAESLASGKPHFQ
                     SEIRYRLSRGQVRWLLVSAEFQLFPDGSVDRVIGVALDITDRKHDEEHRRLLMHELNH
                     RVKNTLAVVQALAHQSFAGSNDKARREAFEGRLVALASAHSLLTRESWETTSLKDVIA
                     SAAAPCDPDGERIVFDGPDMRVPPKIAVALGLAMHELCTNAVKYGALSNDRGRVTVAW
                     SIEDGRLKLCWRERDGPPVAPPQRRGFGSRMLERALAGELDGTVKLAFDPAGVCCLID
                     APLPDG"
     gene            3244..>4110
                     /locus_tag="VE567_03270"
     CDS             3244..>4110
                     /locus_tag="VE567_03270"
                     /inference="COORDINATES: protein motif:HMM:NF015585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialate O-acetylesterase"
                     /protein_id="HYZ47895.1"
                     /translation="MATKSASRRLLGWGQLAIFVIAFGVSAIGSSLLEHEQHIWDKFL
                     VVAGIGDFPAMKEDYLTQFREDFSPRPARIKCPRQTARTMVAVVLGQSNAANYAQVRT
                     EAHDPRVTVFYRGACYEARDPLLGASGSRGSVWPMFAHRVIASGRYDNLVLVPAAIGG
                     TSMESWSPGGVYYDRIESRLERLAHAGLRPTHFLISQGELEADSGQDGRSYQGFAERL
                     LRELNGTGAQVFLATTGRCIRRPNPAIRAAQERARRATGSFAGPDMDAIGPKHRVNGC
                     HLDAAGAKTVAAG"
BASE COUNT          715 a         1317 c         1351 g          727 t
ORIGIN      
        1 gaattgctcg tcggtcgccc aagggcggca cgggatcgcc tccaggtcgc ggttgcgctt
       61 cagcacacgc ctttgggtcc cattgggccg gaactcgtcc gcgactaccc ggaccgaaat
      121 gcaagcggcg caatccgcgc agcttggacg ataggctacc ccttggctgc ggcgaaagcc
      181 gatccggccc agcgcatcgt taagctcacc ggcgtgcggg cctgtcagct ccgtgaacac
      241 cttgcgctcg aatttgccgg ccaaataggg gcaaggattg gggctggtga cgaagaatcg
      301 cggaaagcgg aatggtgcgc tcacggccgt tcctcaccag gcgggcgagt ctgccctgct
      361 ccttcgacaa cgcttatcgg ctagccgcgc tgcaatgaaa agcgtcttta ccttctttgt
      421 cggtgaaaag gcccggttgt tcagccgagc tcgaccatac tgacttcgta aggcacggcc
      481 cgcagcgcag cgatgagccg cttcagatgc gcttcatcgc gtgtctcgca ctcgatatcg
      541 gtgatcaggc ccttggctgg cagcgtcgtg aacacccgct gatgatagac ctcgatgatg
      601 tttacctgct gctcgtggaa aatgcgcgcg acgttgaaca gcgcgcccgg acggtcctgc
      661 agccgcacgc gcagccgcgc cagccgaccc gagcgggcga ggtcacgcag cagcacgttc
      721 gccagcagcc gcgtgtcgat attgccgccg cacagcacga tgccgatctc gcggcccgcg
      781 aacctttttg gatgagccag gagcgcggcc agacccgccg cgccggcacc ttccacaacc
      841 gtcttctcga tctgcagcaa caggctgacc gagcgttcga gatcgcgttc ggaaaccagc
      901 agaatgtcgt ccgccatcgc ctccacgaaa cggcgggtca gtgcgcccgg gtgtttgacc
      961 gcgatgcctt ccgccagcgt atcgccctcg catggcaggt cgagatgctt cacggccccg
     1021 tacatcgacg ggtaaagctc ggcctggacg ccgatcagct cgatacccgg cttcaggcca
     1081 cgcgccgcgg tgcccatgcc ggaaaacagg ccgccgccgc cgatcggcac gaccaaggtg
     1141 tcgatccccg gcgcgtcggc cagcatttcg agcgcgacgg tgccttgtcc ggcgatgatt
     1201 cgtgggtcat cgaacgggtg gacgaaggtc aggccgcgct cggcttccaa ttggcgggca
     1261 tgagcatagg cggcgtcgaa ggtctcgcct tccagaatca ccgacgcgcc atggccttcg
     1321 gtctgggtca cttttaccgt tggggtgggc tgcggcatta cgatcgtgac cgggatgccc
     1381 agccgctggc cgtgataggc gagaccctgc gcatgattgc cggccgaggc ggcgatcacg
     1441 ccccgtgtgc gcgcctcggc gttcagctgc agcaacgtgt tgagcgcccc gcgttccttg
     1501 taggcggcag tgaattggtg gttttcgaac ttcagccaca cactcgcgcc ggtcagttgc
     1561 gagagcgttt gcgaatggag cgtcggcgtg cgcacgatcg atcccgcgat tcgcgctgcc
     1621 gccgcctgaa cgtcggcaag cgagacggga agcggttcgg gggagagatg cgacgcggta
     1681 gccatcggcc ggccttagac gctcccgcac ctgctgtcac cgccgcgggt ggcggccgtg
     1741 cctcgcatgc gttacggttc ccaggtcttt ttgtgtgagc ggcatggctt ctaacctaga
     1801 cctcaggccc gcttcggcct cgtccgaaca ggacgcggag ttggccgcga tcttcgccca
     1861 gacggcggcg gggctcgcgc aggtcgacct cgaaggtcgc ttcaccctcg tcaacgactg
     1921 cttctgcgaa atggtcggcc gaagccgcga ggaactgctg acgctgcgca tgcaggacat
     1981 cacgcatccc gatcatctgc cggagaatgt gccgctgttc gaacgggcgg tgcgcgaggg
     2041 gacgccctat cggatcgaaa agcgctatgt gcgcccggac ggctcgacga tatgggtcga
     2101 caactcggtc accgtcatcc gccggcagga gggcacgccg ttcggcattc ttgccgcaag
     2161 catcgacgtg acgcggcggc gcgaggtgga agatgcgctg cgggccagcg agttgcggct
     2221 gcgcctggcc atggatgcag ggcgcatggc ggtgtgggaa tatgacgttc gcgccggacg
     2281 cattctccat tcgagcgatc tcaatcgcct gctgggcttc atcgagacgc gccaggtgcc
     2341 atatgaggaa ttccgcgcgc ggatagacgc cggcgatctt gagctgctcc gcagcgtggc
     2401 ggccgagtcg ctggcctcgg gcaagccgca cttccaatcg gaaatccgct atcggctgag
     2461 ccgcggccaa gtacgctggt tgctcgtcag cgccgagttc cagcttttcc cagacggcag
     2521 cgtcgacagg gtgatcggcg tcgcgctcga cattaccgac cgcaagcacg atgaagagca
     2581 tcggcgactg ctgatgcacg aactcaatca tcgggtgaag aacacgctcg ccgtcgtgca
     2641 ggcgctcgca caccagagtt tcgccgggag caacgacaag gcgcggcgcg aggcgttcga
     2701 ggggcgcctg gttgcgctcg cctcggcgca tagcctgctg acgcgcgaaa gctgggaaac
     2761 cacctcgctc aaagacgtga tcgcctcggc ggccgcaccc tgcgatcccg acggggagcg
     2821 catcgtattc gacggccccg acatgcgcgt gccgcccaag atcgccgttg cgctcgggct
     2881 tgcgatgcat gagctgtgca ccaatgccgt caaatatggc gcgctgtcga acgatcgcgg
     2941 ccgggtaacc gtcgcttggt cgattgaaga cggccggctg aagctgtgct ggcgcgagcg
     3001 ggatgggcct ccggtcgccc cgccgcagcg gcggggcttt ggctcgcgta tgctcgaacg
     3061 cgcactggcg ggggaactgg acggcacagt caagcttgcg ttcgatcccg ccggcgtctg
     3121 ttgcctgatc gatgcacctt tgcctgatgg ctaaggagct cagcccgccg gctaactaca
     3181 aatcccattt ccccgagtaa tcgattgccc tactaggccg cgcaatcgac acggggggaa
     3241 tcaatggcta cgaaatcggc cagccggcga ctgctcggct gggggcagct ggcgatcttc
     3301 gtgatcgcat tcggtgtgag cgcgatcggc tcgtcgctcc tcgaacatga acagcatatt
     3361 tgggacaagt ttctggtcgt cgccgggatc ggcgacttcc cggccatgaa agaggattat
     3421 ctgacgcaat tccgggaaga tttctcacca cggccggcga ggataaaatg ccctcgccag
     3481 accgcccgga cgatggttgc agtcgtgctc ggccaatcga atgccgccaa ttacgcgcaa
     3541 gtccgcaccg aggcgcacga tcctcgtgtc accgtgtttt accggggcgc ctgctatgaa
     3601 gctcgcgatc cgctgctggg tgcgagcggc tcccggggtt cggtttggcc gatgttcgcc
     3661 caccgcgtca tcgctagcgg tcgctacgac aatctggtcc tcgtgccggc ggcgatcggc
     3721 ggcaccagca tggaaagctg gtcgccgggc ggggtttatt acgaccggat cgaaagtcgc
     3781 ttggagcgcc ttgcccatgc cggcttgagg ccgacgcact ttctcatcag ccagggggaa
     3841 ctcgaggcag atagcgggca ggacggccgc agctatcaag gctttgccga gcgcttgctg
     3901 cgcgagctga acggtacagg cgctcaagtc tttttggcga ccaccggtcg atgcatcagg
     3961 cgcccgaatc ccgcgatccg cgctgcgcaa gagcgagcac gaagggcgac cggctccttc
     4021 gccggaccgg acatggacgc gatcgggccc aagcaccgcg tgaacggatg ccacctggat
     4081 gctgcggggg caaaaaccgt cgccgccggc
//
LOCUS       DASQVK010000156         3082 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_389991,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000156 DASQVK010000000
VERSION     DASQVK010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3082
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389991"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..344)
                     /locus_tag="VE567_03275"
     CDS             complement(<1..344)
                     /locus_tag="VE567_03275"
                     /inference="COORDINATES: protein motif:HMM:NF018604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1275 family protein"
                     /protein_id="HYZ47896.1"
                     /translation="MLNSSRNLALACALSAVAGYVDGIGFLQLGGLFVSFMSGNSTRL
                     GVSLAAEDWTGAIQALELVALFVVGAAAGSLVVLGRGRYRQALVLLAEALLLVAAALA
                     YTFAWPNLAVAA"
     gene            complement(482..2542)
                     /locus_tag="VE567_03280"
     CDS             complement(482..2542)
                     /locus_tag="VE567_03280"
                     /inference="COORDINATES: protein motif:HMM:NF009379.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HYZ47897.1"
                     /translation="MRRRMGQDVRSPHGPRCIALVGPFQSGKTTLLEAILARTGAIRS
                     AGSVDAGTSVGDSSPEARQHKMGVSLTAASTTFMGDSYTFLDCPGSIEFAHDMRAALP
                     AIDAAVVVCEADEKKLPQLQIILRELEEFGIPRFLFLNKIDRANKRIRETLATLQPAS
                     RVPLVLRQIPIWNGDLIEGFVDLALERAFVYREHKPSEVIALDGGDLDREKEARFSML
                     EKLADHDDALMEQLLEDIQPPRDAVFDDLARELCEGLICPVLLGSGIRENGVLRLMKA
                     LRHEAPGVADTAKRLGAPAQKEALAYVFKTVHLQHGGKLSLARLLAGRLDDGAMLTSS
                     SGESGRVSGILAVNGAHDSKRASAEAGDTIALGKLDAIKTGDTLSSGKTAPPALIKIE
                     PTAPALAISLAAADRKDDVKLGQALLRLNEEDPSLSMIQNPRTHDTVLWGQGEMHLRV
                     ALERLKDRFGVNVKSHPPAIGYQETVRKPITQRGRHKKQSGGHGQFGDVVLEIKPMPR
                     GSGFEFHERVVGGAVPKNYIGAVEEGVVDGLARGPLGFPVIDVHVTLIDGSYHSVDSS
                     DLAFRTAARIGVTEGLPHCQPVLLEPIYTVEIVCPTDATAKINAILSARRGQILGFDT
                     REGWPGWDCVRATMPEAEIGDLIVELRSATAGAGSFTRAFDRMAEVTGRAADQIIAAH
                     RAAA"
     gene            complement(2805..>3082)
                     /locus_tag="VE567_03285"
     CDS             complement(2805..>3082)
                     /locus_tag="VE567_03285"
                     /inference="COORDINATES: protein motif:HMM:NF017950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF992 domain-containing protein"
                     /protein_id="HYZ47898.1"
                     /translation="TIRKVGLDLGITQESALAWGVYAPVARLGPGDIAGDYAGAQGSA
                     TLGVGVGGNVLIGGSNNSIALQPLSVQGQVGVNIAAGLESLELRPGR"
BASE COUNT          546 a          996 c         1032 g          508 t
ORIGIN      
        1 atcgcggcga ccgcgagatt gggccacgca aaagtgtagg caagcgcggc ggccacgagc
       61 agcaaggctt cggccagcag caccagggcc tgacggtaac ggccgcgacc gagcacgacc
      121 agacttccgg cggcggcccc gaccacgaac agcgcgacca gctccagtgc ctggatcgcg
      181 cccgtccaat cctcggcggc gaggctgacg ccgagccgcg tcgagttgcc gctcatgaac
      241 gagacgaaca ggccgccgag ttgcagaaag ccgatgccgt cgacatagcc ggcaaccgcg
      301 ctcagcgcgc aggccagggc cagattgcgg cttgaattga gcatgggttg aagaactgcc
      361 ccgcattgag aagcggcagt gtccatgaaa gcgaaccgct tggaaagaag gggttgcgag
      421 aacaattgct atcgtcattc cggggcggtc cggaggaccg aacccggaat gacggagagc
      481 atcacgccgc ggcgcgatgc gcggcgatga tctgatcggc ggcccgtccc gtgacttcgg
      541 ccatgcggtc gaacgctcgc gtgaagctac cggcgccggc ggtggccgag cgcaattcca
      601 cgatcaaatc gccgatctcg gcttccggca tggtggcgcg gacgcagtcc catccgggcc
      661 agccctcgcg ggtatcgaag ccgaggatct ggccgcgccg cgccgacagg atcgcgttga
      721 tcttggcggt ggcatccgtc ggacagacga tctccacggt gtagatcggc tccagcaaca
      781 ccggctggca gtgcggcagc ccctcggtga cgccgatccg cgccgcggtc cggaatgcga
      841 gatcggagga atcgacgctg tgataggagc cgtcgatcaa ggtgacatgg acatcgatca
      901 cggggaagcc gagcggcccg cgcgccagcc cgtcgacgac gccctcttcc accgcgccga
      961 tatagttttt cggcaccgcg ccgccgacca cccgctcgtg gaattcgaag ccggagccgc
     1021 gcggcatcgg cttgatctcg agcacgacat cgccgaactg gccatggccg ccggattgct
     1081 tcttgtgccg gccgcgctgg gtgatcggtt tgcggacggt ctcctgatag ccgattgcgg
     1141 gcggatgcga tttgacgttg acgccaaaac ggtccttgag ccgctccagc gcaacgcgca
     1201 gatgcatctc gccctgcccc cacaacaccg tgtcgtgggt gcgcgggttc tggatcatgc
     1261 tgagcgaggg atcctcctcg ttcagccgca gcagtgcctg gccgagcttg acatcatcct
     1321 tgcggtcggc tgccgcgagc gagatcgcca gcgccggcgc cgtcggttcg atcttgatca
     1381 gcgcgggcgg cgcggtcttg ccgctggaga gtgtgtcgcc ggtcttgatc gcatcgagct
     1441 tgccgagcgc aatggtgtcg ccggcttccg ccgaagcccg cttgctgtcg tgcgcgccat
     1501 tgacggcgag gatgccggag acccgtccgc tctcgccgga cgaggaggtc agcatcgcgc
     1561 cgtcatcgag acggccggcg agcagccgcg ccagcgacag ttttccgccg tgctgcagat
     1621 gcacggtctt gaagacatag gcgagcgctt ccttttgcgc cggcgcgccg aggcgcttgg
     1681 cggtgtcggc aacgccgggt gcctcgtggc gcagcgcctt catcaaccgc agcacgccgt
     1741 tctcgcggat cccagatccg agcagcaccg gacagatcag cccttcgcac aattcgcggg
     1801 cgagatcgtc gaacacggca tcgcgcggcg gctggatgtc ctccagcaat tgctccatca
     1861 gggcgtcatc gtggtcggcg agcttttcca gcatcgagaa gcgcgcttcc ttctcgcggt
     1921 cgagatcgcc gccatcgagc gcgatcacct cggacggctt gtgctcgcga tagacgaagg
     1981 cgcgttccag cgcgagatcg acgaagccct cgatcaggtc gccgttccag atcggaatct
     2041 ggcgcagcac cagcggcacg cgcgatgccg gctgcagggt ggcgagcgtc tcgcggatgc
     2101 gcttgttggc gcggtcgatc ttgttcagga acagaaaacg gggaatgccg aactcctcga
     2161 gctcgcgcag gatgatctgc agttgcggca gcttcttctc atcggcctcg cagaccacca
     2221 ccgcagcatc gatggcggga agcgcggcgc gcatgtcatg cgcgaattcg atcgagccgg
     2281 gacaatcgag gaaggtgtag ctgtcgccca tgaaggtcgt ggaggccgcc gtcaggctga
     2341 cgcccatctt gtgctggcgc gcttcgggac tggagtcccc gaccgaagtt ccggcatcga
     2401 cgctgccggc ggagcggatc gcaccggtcc gcgccaggat tgcttccaaa agtgtggtct
     2461 tgccgctttg gaaagggccc accagcgcaa tgcaccgggg accatgggga cttctgacgt
     2521 cttgtcccat tcgccgcctc atcgtttgga gctcggccct tgattgggtc ggcaaccaat
     2581 gatgctccgc ccgcggcggc gatttggcaa gcgggaacaa ggccgaaaac gtcgctgcgg
     2641 tgcgatgtca cgagagggag cgttccggat cacgtgattg cgagcgaagc gaagcaatcc
     2701 acccgaccat accgaaagta taaattgctt ccgccttcgc tcaagagcta cggcggacaa
     2761 gtcgtcgcca aggcttctgg caataacgac ggaggatggg ccgatcaacg tcccggccga
     2821 agttccaggc tttcgagccc ggcggcgatg ttgacgccga cctggccctg cacgctcagg
     2881 ggctgcagag cgatcgagtt gttggagccg ccgatcagca cattgccgcc cacgccgacg
     2941 ccgagcgtgg cgctaccctg ggcaccggca tagtcgccgg cgatatcgcc gggcccaagt
     3001 cgcgccaccg gcgcgtacac gccccaggcc agcgccgatt cttgggtgat gccgagatcg
     3061 aggccgactt tgcggatggt gg
//
LOCUS       DASQVK010000157         5642 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_41658, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000157 DASQVK010000000
VERSION     DASQVK010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5642
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41658"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1418
                     /locus_tag="VE567_03290"
     CDS             <1..1418
                     /locus_tag="VE567_03290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015456809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type II secretion system protein GspD"
                     /protein_id="HYZ47899.1"
                     /translation="GRPVTQPSPARGLSQVSPRGGATFGGRSSGTTGGGMSATPLPVP
                     DAPVVHASGAAAPTGESIIGRNSAIVTRYEGANAIIVAANADTQRTLGEVIRQLDVRR
                     DQVQVEAIIVEISDALAKRLGVQFILGGKPGSDVPFAVTNYSNALPNIVTIAGAIGAR
                     ELDRTTTTTQAGVTTTTTSSAASQQLQQAAVASILAATGGTGGFVTDIGKNGIFGAII
                     NAVRTDSTSNLLSTPSIVTLDNQEARILVGQEIPITTGQALSNNFDNAFRTVQRENVG
                     IQLQVRPQINEGGAIKLLLRQEVSSIAGPVSNDNSELILNKREIETTVTVDDGEIVAL
                     GGLLDDNERRTIEKIPLLGDIPGLGELFKSRSKSRQKTNLMVFIRPTILRSAADARAL
                     AERRYGYVRERQLLQRPDQEPSLDELVRDYMGALPPTPPPDLPGSSPPPLAPPQIIVP
                     EVHSSTTVVQPVQGPKRERKK"
     gene            1415..2947
                     /gene="gspE"
                     /locus_tag="VE567_03295"
     CDS             1415..2947
                     /gene="gspE"
                     /locus_tag="VE567_03295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017184564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system ATPase GspE"
                     /protein_id="HYZ47900.1"
                     /translation="MSEGDILVAAPPLSEARSIPVVALPYGFARKFGVILLEPDGERF
                     KVALRDGADPRALLEVRRHLSQPIAIERVAPDAFDKLLSDRYAMGGEAAAAAAGSLGL
                     GDDLALIAGDLPTADDLLDSSDDAPAIRLINGVIADAVRQGVSDIHVEPYETGLIVRM
                     RIDGVLRETLRMPAHVAPVLVSRIKVMARLDIAERRVPQDGRISLTLGGKLLDVRVST
                     LPSRAGERVVLRILDKENAALDLAVLGLSRTAEAVLRDALGEPNGIILVTGPTGSGKT
                     TTLYSSLRQLNDGSRNILTVEDPVEYAIEGVGQTQVNPKVGLTFAAGLRAILRQDPDV
                     VMVGEIRDRETAEIAVQASLTGHLVLSTVHTNDAVGAITRMRDMKVEPFLLASTLRAV
                     IAQRLVRRLCPECRRPEPASERVAELLGLEPGATVYEPVGCEACGQTGFRGRVGVFEA
                     VRIDDTIRRLINEGADESAIARHAFARAPNLATAARALVAEGQTTPEEAVRITRREQA
                     DA"
     gene            2940..4157
                     /gene="gspF"
                     /locus_tag="VE567_03300"
     CDS             2940..4157
                     /gene="gspF"
                     /locus_tag="VE567_03300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007713499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system inner membrane protein
                     GspF"
                     /protein_id="HYZ47901.1"
                     /translation="MPDFDYLAIDTRGGERRGSVVAPTIEDARERLDRRKLYVVRLEP
                     GSGAPRPKRALLSFTRRKLTAKELTLFTRQIATLVQVSPLEEALRTISRQTEKPHVRT
                     ITSAVHAGVLEGRRMSEAMAREPKSFPPLYRAMVSAGESSGTLPTILERLADLMERQA
                     QVRSKVLTAMAYPIVLALVALSVVTALMMFVVPKVVEQFETVGQQLPLLTRIVIGISS
                     LLVNWWWAMLLVAVVAGLIFWRALKDPAMRLRFDRGLLRVPLIGRLIRDLHAARMART
                     LATMVGSRLPLLEGLALTTGTIHNRALRAASEEIVESIRGGGSLSAALRRAGVFPPLL
                     VYLTASGEASGRLDTMLERAADYLEREFDSFTAAALSLLEPAIIVVMGGIVATIVLSI
                     LLPILQLETLAGA"
     gene            4157..4606
                     /gene="gspG"
                     /locus_tag="VE567_03305"
     CDS             4157..4606
                     /gene="gspG"
                     /locus_tag="VE567_03305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014075704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system major pseudopilin GspG"
                     /protein_id="HYZ47902.1"
                     /translation="MSQSYYRKTAQRGEEGFTLVELMVVIVILGLLATIVAINVLPAT
                     GKANVQKAKTDIATIEQALEMYRLDNLTYPSSTEGLQALVAPPPGMGQPQRYRQGGYV
                     KRLPNDPWGNPYRYTYPGQHGAFDVFSLGADNKEGGEGENADIGNWQ"
     gene            4581..5042
                     /locus_tag="VE567_03310"
     CDS             4581..5042
                     /locus_tag="VE567_03310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010217477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspH/FimT family pseudopilin"
                     /protein_id="HYZ47903.1"
                     /translation="MPISATGNRESGFTLIELMIVLAIIGLVAAGVVLAIPDPRGRLS
                     DEAERFAACTVAARDLAILEGRPVAVRVTARGYAFDRRQSGAWVPLSDKSFRSQPWSG
                     GTSALVGQGGTIRTAFDATGQPSAPASITLVRAGQQVRVRIAADGGVRVGA"
     gene            5029..5385
                     /gene="gspI"
                     /locus_tag="VE567_03315"
     CDS             5029..5385
                     /gene="gspI"
                     /locus_tag="VE567_03315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006960502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspI"
                     /protein_id="HYZ47904.1"
                     /translation="MSARERGFTLLEMLVALAVFSLAALALLRLEGATVRQTGQLDER
                     MIAQLVARNLAVETLTDPAPPPVGASAGEAINGGRRWRWSRVTSRTPDQRLVRVDISV
                     ATTRAPALLTIVRPAT"
     gene            5382..>5642
                     /locus_tag="VE567_03320"
     CDS             5382..>5642
                     /locus_tag="VE567_03320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010336573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HYZ47905.1"
                     /translation="MNRNGFTLVELLVALLIFGMLAAAGVGLLRFSVDAQAATKTRLD
                     ALAGERRVESLVAADAAQAVPRVTRNEAGDPVQAFDGGPGGFT"
BASE COUNT          879 a         1953 c         1927 g          883 t
ORIGIN      
        1 ccggccggcc ggtcacccag ccgagcccgg cgcggggcct cagccaggta tcgccgcgcg
       61 gcggcgccac ctttggcggc cggtcgagcg gcacgactgg cggcgggatg agcgccacgc
      121 cgctgccggt cccggatgcg cccgttgtcc atgcgagcgg cgcagccgct ccgaccggtg
      181 aaagcatcat cggccgcaat tcggcgatcg tgacgcgcta cgaaggcgcg aacgcaatca
      241 tcgtcgccgc caatgccgac acccagcgca cgctgggcga agtgatccgg cagctcgacg
      301 tgcgccgcga tcaggtgcag gtcgaggcga tcatcgtcga gatttccgac gcgctcgcca
      361 agcggctggg cgtccagttc attctgggcg gcaagccggg cagcgacgtc ccgttcgcgg
      421 tcaccaatta ctcgaacgcc ctgccgaaca tcgtgacgat cgccggcgcg atcggcgcgc
      481 gcgagctcga ccggacgacg accaccaccc aggccggcgt caccaccacg acgacaagca
      541 gcgccgcgtc ccaacagctc cagcaggccg ccgttgcctc gatcctggcc gcaaccggcg
      601 gcacgggcgg tttcgtcacc gatatcggca agaacgggat tttcggcgcg atcatcaacg
      661 cggtgcgcac cgacagcacg tcgaacctgc tctcgacccc gtcgatcgtg acgctcgaca
      721 atcaggaagc gcgcatcctg gtcggccagg aaatcccgat caccacgggc caggcgcttt
      781 cgaacaattt cgacaatgcc ttccgcaccg tgcagcgcga gaatgtgggc atccagctcc
      841 aggtccggcc gcagatcaac gagggcggcg cgatcaagct gctgctgcgc caggaagtga
      901 gctcgatcgc gggccccgtc tcgaacgaca atagcgaact catcctcaac aagcgcgaga
      961 tcgagacgac ggtgacggtc gacgatggcg agatcgttgc gctcggcggc ttgctcgacg
     1021 acaatgagcg gcgcacgatc gagaagattc cgcttctggg cgacattccg gggcttggcg
     1081 agttgttcaa gtcgcgttcc aaatcgcggc agaaaaccaa tctgatggtg ttcatccgcc
     1141 cgaccatctt gcgctccgcc gccgatgcgc gcgcgctcgc cgagcggcgc tatggctatg
     1201 tgcgcgagcg gcaattgctc cagcgtccgg atcaggaacc cagcctcgac gagctggtgc
     1261 gcgactatat gggcgcgctg ccgcccacgc cgccgcccga tcttccgggc agctcgccgc
     1321 cgccgctcgc gccgccgcag atcatcgtgc ccgaagtcca cagctcgacg acggtcgttc
     1381 agccggtgca gggcccgaaa cgggagcgga agaaatgagc gagggcgaca ttctggtcgc
     1441 cgcgccgccg ctaagcgagg caaggtcgat tcctgtcgtc gcgctgcctt atggcttcgc
     1501 gcgcaaattc ggcgtgatcc tgctggagcc ggacggcgag cggttcaagg tggcgttgcg
     1561 cgacggcgcc gacccgcgcg cgctgctcga agtgcgccgg catctgagcc agccgatcgc
     1621 gatcgagcgc gtcgcgcccg acgctttcga caagctcctc tccgaccgct atgcgatggg
     1681 cggcgaagcc gcagccgccg cagccggctc gctggggctg ggcgacgatc tcgcgctgat
     1741 cgccggcgac ctccccactg cggacgatct gctcgattcg tcggacgatg cgcccgccat
     1801 ccgcctcatc aacggcgtga tcgccgacgc ggtgcgccag ggcgtgtcgg atatccatgt
     1861 cgagccctat gagacggggc tgatcgtccg catgcggatc gacggcgtgc tgcgcgagac
     1921 gctgcgcatg ccggcgcacg ttgcgccggt gctggtcagc cgcatcaagg tgatggcccg
     1981 cctcgacatt gccgagcggc gggtgccgca ggacgggcgc atctcgctca cgctcggcgg
     2041 caaattgctc gacgtgcgcg tgtccacgct gcccagccgc gccggagaac gggtcgtgct
     2101 gcgcatcctc gacaaggaga atgccgcgct cgatctcgcc gtgctcggcc tgtcgcgcac
     2161 tgccgaggca gtcctgcgcg atgcgctggg cgagcccaat ggcattattc tcgtcaccgg
     2221 cccgaccggc tcgggcaaga cgacgacgct ctattcgagc ctgcgccagc tgaacgacgg
     2281 cagccgcaac atcctgactg tcgaggaccc ggtcgaatat gcgatcgagg gcgtcggcca
     2341 gacccaggtg aacccgaagg tcggcctcac tttcgccgcc gggctgcggg cgatcctgcg
     2401 ccaggacccg gacgtggtta tggtcggcga aatccgcgac cgcgagaccg cggaaatcgc
     2461 ggtgcaggcg tcgctgaccg gccatctggt gctctcgacc gtgcacacca acgacgcggt
     2521 cggcgcgatc acgcggatgc gcgacatgaa ggtcgagccg ttcctgctcg cctcgacgct
     2581 ccgcgccgtg atcgcgcagc ggctggtccg gcggctctgc cccgaatgcc gccggcctga
     2641 gccggcgagc gagcgggtcg ccgagctgct tggcctcgaa cccggcgcga ccgtgtacga
     2701 gccggtcggc tgcgaggcgt gcgggcagac cgggttccgc ggacgggtcg gcgtgttcga
     2761 agcggtgcgg atcgacgaca cgatccgtcg cctgatcaac gaaggcgcgg acgaaagcgc
     2821 gatcgctcgc catgccttcg cccgcgcccc gaacctcgcc accgccgcgc gcgcgctggt
     2881 cgccgaaggc cagaccacgc ccgaggaggc ggtccgcatc actcgccggg agcaggcgga
     2941 tgcctgattt cgactatctc gcgatcgaca cccgcggggg tgagcggcgc gggagtgtcg
     3001 ttgcgccgac gatcgaggat gcgcgcgagc ggctcgatcg gcgcaagctg tatgtcgtgc
     3061 ggctggagcc gggcagtggc gcgccgcggc cgaagcgcgc gctgctttca ttcacgcgcc
     3121 gcaagctgac ggccaaggag ctgacgctgt tcacgcgcca gatcgcgact ttggtgcagg
     3181 tcagcccgct tgaggaagcg ctgcgcacca tttcgcgtca gaccgaaaag ccgcatgtgc
     3241 gcaccattac gagcgccgtg catgcgggcg tgctcgaagg ccgccgcatg tccgaggcga
     3301 tggcgcgcga gccgaagagc ttcccgcctc tctatcgcgc gatggtgagc gcgggcgaaa
     3361 gctcgggcac gctgccgacg atcctcgaac gcctcgcgga tctgatggaa cggcaagcgc
     3421 aggtccgctc caaagtgctg accgcgatgg cctatccgat tgtgctggcg ctggttgcgc
     3481 tctcggtcgt caccgcgctg atgatgttcg tcgtgccgaa ggtcgtcgag caattcgaga
     3541 ccgtcggtca gcaattgccg ctgctcaccc ggatcgtgat cggcatttcc agcctgttgg
     3601 tgaactggtg gtgggcgatg ctgctcgtcg cggtcgttgc cgggctgatc ttctggcgcg
     3661 cgctcaagga cccggcgatg cggctgcgct tcgatcgcgg gctgctgcgg gttccactca
     3721 tcggccgcct gatccgcgac ttgcatgcgg cgcgcatggc ccgaacgctg gcgacgatgg
     3781 tcggctcgcg cctcccgctg ctcgagggcc tcgcgctcac caccggcacg atccacaacc
     3841 gtgcgctccg cgccgcatcc gaggagatcg tggaatcgat ccgcggcggc ggcagcctgt
     3901 cggcggcgct caggcgggcc ggcgtcttcc cgcccttgct cgtctatttg accgcaagcg
     3961 gcgaagcctc gggccgactg gatacgatgc tggagcgcgc ggccgattat ctggaacgcg
     4021 aattcgacag cttcaccgcg gcggcgctct cgctcctcga gcccgcgatc atcgtcgtca
     4081 tgggcggcat cgtggcgacc atcgtgctct cgatccttct tcccatcctt cagctcgaaa
     4141 ccttggcagg cgcgtaatgt cccaatccta ttaccggaaa accgcccaac gaggcgaaga
     4201 aggtttcact ctcgtcgagc tgatggtcgt gatcgtgatc ctcggcctgc ttgccaccat
     4261 tgtcgcgatc aacgtgttgc cggccaccgg caaggcaaat gtccaaaagg ccaagaccga
     4321 catcgcgaca atcgagcagg cgctggagat gtaccggctc gacaatctga cttacccgtc
     4381 cagcaccgag gggctgcagg cgctggtcgc gccgccaccg ggcatgggcc agccgcagcg
     4441 ttaccgccag ggcggctatg tcaagcgctt gcccaacgac ccctggggca atccgtatcg
     4501 ctacacctat ccggggcagc acggcgcgtt cgatgtcttc tcgctgggcg cggacaacaa
     4561 ggaaggcggc gagggcgaga atgccgatat cggcaactgg caatagggag agcggattca
     4621 cgctgatcga gctgatgatc gtgctcgcga tcatcggcct tgtcgccgcg ggtgtcgtcc
     4681 tcgccatccc cgacccccgc ggccgcctgt ccgacgaggc cgagcggttc gcggcgtgca
     4741 cggttgccgc gcgcgatctg gcgatcctcg aaggccggcc ggtggcggtg cgcgtgacgg
     4801 cgcgcggcta tgccttcgat cgccggcaga gcggggcctg ggtgccgctg tccgacaaga
     4861 gtttccgctc ccagccctgg agtggcggca cctcggcgct ggtggggcag ggcggcacga
     4921 tccgcactgc gttcgatgcg accggccagc cgagcgcgcc ggcgtcgatc acgctggtgc
     4981 gcgccggcca gcaagtccgc gtgcgcatcg ctgccgatgg aggcgtgcgt gtcggcgcgt
     5041 gagcgaggct tcaccctgct tgagatgctg gtcgcgctcg cggtgttcag cctggcggcg
     5101 ctggcgctgc tccgcctcga aggcgcgacg gtgcgccaga ccggccagct ggacgagcgc
     5161 atgatcgcgc agctcgttgc gcgcaacctt gctgtcgaga cgctgaccga cccggcgccg
     5221 ccgccggtcg gcgcgagcgc gggcgaggcg atcaacggcg gccgccgctg gcgctggtcg
     5281 cgcgtcacca gccgcacccc cgaccagcgc ctggtccggg tcgacatcag tgtcgcgacc
     5341 acccgcgcgc cggcgctgct caccattgtc cggcccgcga catgaaccgc aacggcttta
     5401 cccttgtaga gctcctcgtc gcgctgctga ttttcggcat gctcgcggcg gcgggcgtgg
     5461 ggctgctgcg cttcagcgtc gatgcgcagg cggcgaccaa gacgcgcctc gatgcactcg
     5521 ccggggaacg gcgtgtcgag tcgctggtcg cggcggacgc ggcccaggcc gtcccgcgcg
     5581 tcacccgcaa cgaggccggc gacccggtgc aggccttcga cggcggcccc ggcggcttca
     5641 ca
//
LOCUS       DASQVK010000158         3508 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_231546,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000158 DASQVK010000000
VERSION     DASQVK010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3508
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231546"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            141..1187
                     /locus_tag="VE567_03325"
     CDS             141..1187
                     /locus_tag="VE567_03325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HYZ47906.1"
                     /translation="MIEGSPALQRGLRIALVVGLALLGLWVARAFLPALLWAIVLAIA
                     VSPAYARAEMQWPAGKRLWLPLLFTLTIALAVLIPVALGIVRAAQDARELAQWLASAR
                     AYGVTEPGWIAQLPFPHKAIDDWWATNLGSAEAVHHQLGRLSNPDLLARSRAIGGLVL
                     HKLVQFLFTLVTLFFLLRYQDDIAAQARRAADRLVGPAGERIGEQMVRSVRGTLDGLV
                     AVGIGEGALIGVAYGIAGVPHPVLMGALTALAAMIPFAVILPIGAALLMLLSQGAVAA
                     AIAVAVVSGVVVFVADHFVRPALIGGATRLPFLWVLIGILGGVESFGLLGLFVGPAVM
                     AALILLWRELVADA"
     gene            complement(1191..2624)
                     /locus_tag="VE567_03330"
     CDS             complement(1191..2624)
                     /locus_tag="VE567_03330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007707503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HYZ47907.1"
                     /translation="MALAVKEEAGGKLKQVYAARGFWPLWVKNGALTPAANTLVSYLE
                     SADLDGLDPRDYGIKELRAAIERAQDGSAPALARAELALSKAFARYVRDVRRAPTAKI
                     RYLDEELVPKKLGEDDVLRHANSALDFSTYVQTMGWMDPAYAGLRHALAERQARWSAL
                     PAISVPAGPALKPGMSNARVRLLRQRLGLPDGARFDRSVAVALKSFQAAHGLKPDGSA
                     GAGTIAALNRPAAWYDRKLQTNLDRARLLPGPGVRHITVNVAAQQLVYYQDGVEAGRM
                     KVVAGKPTEQTPMLAGVLRYAILNPYWNVPSDLVQRKVATGVLTQASMQKLGFQALSD
                     WSAQPQLLDPAQIDWGAVKAGAQELRVRQVPGPANAMGKVKFMFPNDLGIYLHDTPER
                     ALFAKPVRYFSSGCVRLEDAQRLGEWLFGKPLLAESDAPEQDVPLPQPVPVYLTYLTA
                     ETKDGGLFFYDDAYGRDGADARRVASR"
     gene            complement(2805..3068)
                     /locus_tag="VE567_03335"
     CDS             complement(2805..3068)
                     /locus_tag="VE567_03335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013040474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47908.1"
                     /translation="MRVTSLALLLAAAAGLSACANTEDVPVAPAAPVGPGAIVGSVAA
                     DRNGDGIADGYYTNDGTYVAFQAPPCPAPPPPPPPPRGSGERG"
BASE COUNT          563 a         1165 c         1202 g          578 t
ORIGIN      
        1 aacctgccga agacccgttc cggcaagatc atgcgccgca tcctccgtaa gatcgcagag
       61 ggcgacgtct cgaacctggg cgacaccagc acgctggccg atccggcagt cgtcgacgac
      121 ctggtcgcca atcgggcgac atgatcgagg gctcccctgc cctgcagcgc ggcctgcgga
      181 tcgcactggt ggtcgggctg gcgctactcg gcctgtgggt ggcgcgggcg ttcctgccgg
      241 ctctcctttg ggcgatcgtg ctcgcgatcg cggtgtcgcc tgcctatgcg cgggcggaga
      301 tgcagtggcc ggcgggcaaa aggctgtggc tgccgctgct gttcaccctc accatcgcgc
      361 tggcggtgct aatccccgtt gcgctcggta tagtgcgcgc ggcgcaggat gcacgcgagc
      421 tggcgcagtg gctcgcctcg gccagggcct atggcgtgac cgagcccgga tggattgcgc
      481 agctgccttt cccgcacaag gcgatcgacg actggtgggc gacgaacctc ggcagcgccg
      541 aagcagtgca ccaccagctc gggcgattga gcaatcccga ccttctcgcc cgctcgcgcg
      601 ccatcggggg cctggtgctg cacaagctcg tgcaattcct gttcacgctg gtcacgctgt
      661 tcttcctgct tcgctaccag gacgacattg cagcccaggc ccggcgcgcc gcagaccggc
      721 tggtgggccc ggccggcgag cggatcggcg agcagatggt acgatcggta cgcggcacgc
      781 tcgacggact ggtggccgtc ggaatcggcg aaggcgcgct gatcggcgtc gcctacggaa
      841 tagcgggcgt gccgcacccg gtgctgatgg gagcgctgac cgcgctcgct gcgatgatcc
      901 ccttcgccgt gatcctgccg atcggcgctg ccctgctgat gctgctgagc caaggcgccg
      961 tggcggccgc gattgcggtc gcggtggtca gcggtgtcgt ggtgtttgtc gctgaccatt
     1021 tcgtgcgccc ggcgctgatc gggggcgcga cgcgactgcc gttcctctgg gtgctgatcg
     1081 ggatcctggg cggcgtggag agcttcggcc tgctcggcct gttcgtcggc ccggcggtga
     1141 tggcggcgct catcctgctc tggcgggagc tggtggcgga cgcctgagcg tcagcggctc
     1201 gccacccgtc gcgcgtcggc gccgtcgcga ccataagcat cgtcgtagaa gaaaagcccg
     1261 ccgtccttcg tctccgccgt cagataggta agatagacag gcaccggctg cggcagcggc
     1321 acatcctgct ccggcgcatc gctttcagcc aggagcggct tgccgaacag ccattcgccc
     1381 aggcgctgcg catcctccag ccgcacgcag cccgagctga aatagcgcac cggcttggca
     1441 aacagcgcgc gttccggcgt gtcgtgcaga tagatgccga gatcgttggg gaacatgaac
     1501 ttgactttcc ccatcgcgtt ggccggcccc ggaacctggc gcacgcgaag ctcctgcgca
     1561 cctgccttga ccgcgcccca gtcgatctgt gccggatcca gaagctgcgg ctgggcgctc
     1621 cagtccgaca gcgcctggaa cccaagcttt tgcatgctgg cctgagtgag cacgccggtt
     1681 gcgaccttgc gctgcaccag atcggagggc acgttccaat agggattgag aatcgcgtag
     1741 cgcaacacgc ccgccagcat cggcgtctgc tcggttggct tgccggcgac cactttcatg
     1801 cggccggctt ccaccccgtc ctgataatat acgagctgct gggcggcgac attgacggtg
     1861 atgtggcgca cgcccggacc gggcagcagg cgagcgcgat cgagattggt ttgcagcttg
     1921 cggtcgtacc atgccgccgg ccggttgagc gcagcgattg tgcctgcccc ggccgagccg
     1981 tcgggcttaa gcccgtgcgc tgcctggaag gacttgagcg cgacggcaac gctccgatca
     2041 aaacgggcgc catcgggcag gccaagccgc tggcggagca gccgcacgcg cgcattgctc
     2101 atccccggct tgagcgcagg gccggccggc accgagatgg ccggcagcgc gctccagcgg
     2161 gcctggcgct ccgcgagtgc gtggcggagc ccggcataag ccgggtccat ccagcccatc
     2221 gtctggacat aggtgctgaa atccaaggcg ctattggcgt ggcgcaacac gtcgtcttca
     2281 ccgagcttct tggggacgag ttcctcatcc agatagcgga tcttcgcagt cggtgcgcgg
     2341 cgcacgtccc gcacatagcg ggcaaaggcc ttggacagcg ccagctccgc gcgcgccagc
     2401 gccggggcgg agccgtcttg cgcgcgctcg atcgccgcgc gaagctcctt tatcccatag
     2461 tcgcgcggat cgagaccatc gagatcggcg gattcaagat aggaaaccag cgtgttcgcg
     2521 gccggcgtaa gtgcgccgtt cttgacccaa agcggccaaa agccgcgggc tgcataaacc
     2581 tgtttgagct tgccgccggc ctcttccttg actgccaggg ccacactgtc aggcgtcggc
     2641 ggcgtcgccg actgcgcgaa tgcggcggtg atagggaaaa tcgcgatgca cgccgcagcc
     2701 agcgcgcccc gaaacctgtt gggcaacgtc acactccgag acctgggcga gcgagcgccg
     2761 ccccgcacga ggacaacgcc cgctcgctca attggatgct gcgcttaacc gcgttcgccc
     2821 gagccccgcg ggggcggcgg aggcggaggc ggcgcagggc acgggggcgc ctggaaagcg
     2881 acataggtgc cgtcgttcgt gtaatagccg tccgcaatgc catcgccgtt gcggtcggcg
     2941 gcgaccgatc cgacgatcgc gcccggcccc accggcgccg ccggcgcgac cggcacatcc
     3001 tcggtattgg cgcaagccga cagaccggcg gcggcggcga gcaatagagc taagctggtg
     3061 accctcattt ttctctcccg gagcaacgtc ccgaccgcgc ggcgcggcag tccgcagaaa
     3121 ggcgaacgtc atggaggcag tctcgttccc ggacagcaac ggcggttcgt gctggcgctg
     3181 cgacgaaatg gcctaaaaac gggaacgaac acccgcccga tgaggaacag ccgattcagc
     3241 ggtcgcatca ggcttgactt attcgtaagc ggaaactaac ggttagtgat ggctaacgct
     3301 tctcatgctt tcgacgctct cggcgattcg acgcggcggg cagtgctcga acgagttgcg
     3361 cggggaccgg cggcggtcgg cgagatcgcg caggacctac ccgtcactcg gcccgcagtg
     3421 tcgcagcatc tgaaggtgtt gaaggaagcc gggctggtga ccgaaatcgc acagggcacg
     3481 cggcgcattt accgaatcga cccgcgcg
//
LOCUS       DASQVK010000159         2238 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_136450,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000159 DASQVK010000000
VERSION     DASQVK010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2238)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2238)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136450"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..415
                     /locus_tag="VE567_03340"
     CDS             <1..415
                     /locus_tag="VE567_03340"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162516.1"
                     /note="One of the components of the high-affinity
                     ATP-driven potassium transport (or KDP) system, which
                     catalyzes the hydrolysis of ATP coupled with the exchange
                     of hydrogen and potassium ions; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit B"
                     /protein_id="HYZ47909.1"
                     /translation="GNMVDLDSNPTKLIEVVEIGKQLLMTRGSLTTFSIANDVAKYFA
                     IIPAMFLAFYPQLNVLNIMHLASPQSAILSAIIFNALIIPLLVPLALKGVKYRPIGAG
                     PLLARNLAIYGAGGVIAPFIGIKLVDLAVAALHLA"
     gene            426..1226
                     /locus_tag="VE567_03345"
     CDS             426..1226
                     /locus_tag="VE567_03345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020480351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HYZ47910.1"
                     /translation="MRNIVVFTAAALSLTAAARAQGTDEPALCTDRPGKATSACTVPV
                     GKIQFETDLVNWTRMDAGGSRVDTIQYTNPTLKLGLGPNTDVQVNISPYEDVRTRAGG
                     VVGHSRGVGDLFIRLKQRFTDPDSKLQIGIVPYVKAPTAKSGIGNREWEGGAVLPVQY
                     SLPQGWSLTFAPELDVLADSDDLSSRHMQVAGAVNVGKALSPTVTAYAELWTAQNYDP
                     VGTVHQYSVDAAIAWLVSPKLQLDLGGNFGLNQATPDAQAYVGLSTRF"
     gene            1239..1826
                     /gene="kdpC"
                     /locus_tag="VE567_03350"
     CDS             1239..1826
                     /gene="kdpC"
                     /locus_tag="VE567_03350"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013846980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HYZ47911.1"
                     /translation="MKSDFLSSLRPAVVMTLLFAVLLGVLYPLALTGIGQLVFPAQSN
                     GSIVRNAKGQAIGSTLIGQGFAGAGYFHGRPSAAGKGYDGLASSGSNLGPASKALVDR
                     VNADIAALRKDGVTGPLPADSVTASGSGLDPDISPATAYLQAARVAKARGLKENQVRT
                     LVDGNIEKAMGFLGEDRVNVLALNLALDRMAGRAH"
     gene            1823..>2238
                     /locus_tag="VE567_03355"
     CDS             1823..>2238
                     /locus_tag="VE567_03355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010338098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HYZ47912.1"
                     /translation="MTDRDRPAPEAFLRQAAQEGRGKLKIFLGAAPGVGKTYEMLSEA
                     RARHDAGLDVVVGVVETHGRKETERLTEGLEVVPRHAVEYQAHILKEMDIDALLARRP
                     ELALVDELAHTNAPGSRHPKRFQDVEELLDAGIDVYS"
BASE COUNT          396 a          749 c          712 g          381 t
ORIGIN      
        1 cggcaacatg gtcgatctcg actccaaccc gaccaagctg atcgaggtgg tggagatcgg
       61 caagcaactc ctgatgacgc gtggatcgct gacgacgttc tcgatcgcca acgacgtggc
      121 gaagtatttc gccatcatcc cggcgatgtt cctcgcgttc tatccgcagc tcaacgtgct
      181 caacatcatg cacctggcga gcccgcagag cgcgatcctg tcggcgatca tcttcaacgc
      241 gctgatcatc ccgctgctcg tgccgctcgc actcaaaggc gtgaagtacc ggccgatcgg
      301 ggcgggaccg ctgctcgccc gcaacctcgc catctacggc gccggcggcg tcatcgctcc
      361 gttcatcggc atcaagctcg tcgatcttgc ggtcgcggct ctccacctcg cttaaggatt
      421 acaagatgcg gaatatcgtc gtcttcaccg ccgccgctct ctcgctgacg gcagccgcca
      481 gggcacaagg caccgacgag ccggcgctgt gcaccgatcg tccgggcaag gcgacctccg
      541 cctgcaccgt gcccgtgggc aagatccagt tcgagacaga cctggtgaac tggacccgga
      601 tggatgccgg tgggagccgc gtcgacacga tccagtacac caatccgacg ctgaagctgg
      661 gccttggccc gaacacggac gttcaggtca acatttcgcc ctacgaggac gtgcgcaccc
      721 gggccggcgg cgttgtgggc cacagccgcg gcgtcggcga ccttttcatt cgcttgaaac
      781 agcgcttcac cgatccggac tcgaagcttc agatcggcat cgttccctat gtgaaagcgc
      841 cgacggccaa atcgggcatc ggcaacaggg aatgggaggg cggcgccgtc cttcccgttc
      901 agtacagcct gccccagggc tggagcctga ccttcgcgcc ggaactcgac gtgcttgcgg
      961 atagcgatga cctgagcagc cgccacatgc aggtcgccgg cgcggtgaac gtcggcaagg
     1021 cgctgtcgcc cacggtcact gcctatgccg agctctggac cgcgcagaat tacgatcctg
     1081 tcggaaccgt acatcaatat tccgtcgatg ccgcgattgc ctggctggtc tcgccgaagc
     1141 tgcagctcga tctgggcggc aatttcgggc tgaatcaggc gacgcccgac gcgcaggcct
     1201 atgtcggcct gtccacccgc ttttgaggag ctgctgcgat gaaaagcgat ttcctttcct
     1261 cgctgcgccc ggcagtggtg atgacgctgc tgtttgccgt gctgctcggc gttctttatc
     1321 cgctggcgct caccgggatc ggccagctcg tctttcccgc gcaaagcaac gggagcatcg
     1381 ttcgcaatgc caagggccag gcgatcggct cgacgctgat cggccaaggc tttgccggtg
     1441 cgggctattt ccacggccgg ccgtcggccg cgggcaaagg ctatgacgga ctcgcctcat
     1501 cgggctccaa cctcggcccg gccagcaaag cgctggtgga ccgggtgaac gccgacatcg
     1561 cggcgctccg caaggacggc gtcaccggcc cgctgccggc ggactcggtg acggcctcag
     1621 gctcgggcct cgacccggac atctcgccgg caaccgccta tctgcaagcc gcgcgcgtgg
     1681 cgaaggcgag gggcctgaag gaaaaccagg tgcgtacact cgtcgatggc aatattgaaa
     1741 aggcgatggg cttcctgggc gaggatcgcg tgaacgtgct ggcattgaat ctcgccctgg
     1801 atcgaatggc cggccgggca cattgaccga ccgcgaccgg cccgcgccag aggcctttct
     1861 gcgccaggcg gcgcaggaag gccgcggcaa gctcaagatc ttcctgggcg cagcgcccgg
     1921 cgtgggcaag acctacgaaa tgctctccga agcccgcgcc aggcatgacg cgggcctcga
     1981 cgtcgtggtg ggggtcgtcg agacgcacgg gcgcaaggag accgagcggc tgacggaagg
     2041 ccttgaggtc gtccctcgcc atgccgtcga gtatcaggcc catatcctca aggagatgga
     2101 catcgacgcg ctgctggcgc gccggcccga actcgcgctg gtggacgagc tcgcccacac
     2161 caacgcgccc ggcagccgcc atccgaaacg cttccaggat gtcgaggaac tgctggatgc
     2221 cggcatcgac gtctattc
//
LOCUS       DASQVK010000160         3471 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_199915,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000160 DASQVK010000000
VERSION     DASQVK010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3471)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3471)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3471
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199915"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(320..817)
                     /locus_tag="VE567_03360"
     CDS             complement(320..817)
                     /locus_tag="VE567_03360"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HYZ47913.1"
                     /translation="MKRPDRKARAPTALDAIDRRILAVLQEDNQITNLALAERVGLSP
                     PACLKRVRRLRDEQVVVKDVALVDPEKVGQSIVAFVGVELDRQREDVLAAFERKISAQ
                     PEVQQCYFVSGETDYLLVVTCRDMEAYNEFARRVLANEHNIKRFRTSFNLSRVKFTTT
                     VPIDV"
     gene            946..2301
                     /locus_tag="VE567_03365"
     CDS             946..2301
                     /locus_tag="VE567_03365"
                     /inference="COORDINATES: protein motif:HMM:NF012677.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYZ47914.1"
                     /translation="MNEAVRSNRIEVHDRDALAKARAVLDACADAREMGESIAAAVRR
                     NAQWRGEECINLLAPEAPTSPGVRALLAAEIGTRAAEGHIGPVNRWFAGTRHIDEVEA
                     LCVELLKRHFHCAYADHRMCASMIGNAVVYTALSQPGDVVMSAAQPIGGHSSNRIDGP
                     AGAMGRKVVDIPFDPHELVVDIDLFRRAAPLVRPKLVALGLSMTLFPQPVAAMKQVIA
                     EWGGRLFFDAAHQLGLIGGKQFQAPLKEGADIMTGSAGKTFSGPQSGIIVWDDPEITE
                     PVTTAVFPVWAATHQVNRVAALALATAEAIAFGEALQAQIVKNARALAAALHARGIPL
                     LGSHKGFTTTHQAIADVRQYGRGLKAAQTLERANIIVNKNLLPADRKEDWDYPGGLRI
                     GTIEVTRFGMKETEMEAIADLIARVIVRGESPESVRPEAIALRHSFPTLYYCFESGLP
                     K"
     gene            2804..>3471
                     /locus_tag="VE567_03370"
     CDS             2804..>3471
                     /locus_tag="VE567_03370"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate binding protein"
                     /protein_id="HYZ47915.1"
                     /translation="MRLLVIVLAVLAASTAAVAQEKAWRLGVLTPGRETRGAGSLFSS
                     TLPVLAERGFVEGRNLEVIIAAAEGDPARLPSLAAALADARPDAIITIGTQATDAALA
                     AAPRTPIVLSFAGQDPVETGHARSLARPGGRVTGIFFRAVETDAKRLELLVEAIPDAK
                     HFGFLAAPTLEPARAEFLARTAERLGVVLTTRTATGPADFPAVFAALQEAGTVGVLVQ
                     ATTL"
BASE COUNT          581 a         1152 c         1166 g          572 t
ORIGIN      
        1 ggaagcgccc caacgggatc gaggacatcc ccatcgagac agaggccacg ttgcgcagcc
       61 cgtagacgaa gcggagccga ggatgaagag gatgttccat cgctcgagcc agcggaaggc
      121 cgattcggcg ccggggcgcc agcgcgggca gacgatctcg tgacagcgcg cgaggcgcgc
      181 cgcccgcgcg acccggatga caagcgagaa gtcctgactt gtccggtgat gctcgagaag
      241 gggcaggatt tgctcgttag gcgtgcgctc ggtgagcgtc ccgctcggcg tgatccgttc
      301 agtccgacga catgctcgct cacacatcga tcggcacggt ggtcgtgaac ttcacccgcg
      361 aaagattgaa gctggtgcgg aagcgcttga tgttgtgctc gttggcgagc acccggcgtg
      421 cgaactcgtt ataggcctcc atgtcgcggc aggtgacgac caagagataa tcggtttcgc
      481 cggagacgaa gtagcattgc tgtacctcgg gctgggccga gatcttgcgc tcgaaggcgg
      541 cgagcacgtc ctcgcgctgg cggtcgagtt cgacgcccac gaaggcgacg atgctctgcc
      601 cgaccttctc ggggtcgacc agcgccacgt ccttcaccac cacctgttcg tcgcgcagcc
      661 gccgcacgcg cttgaggcac gccggcggcg agagcccgac gcgctcggcg agcgccaggt
      721 tggtgatctg gttgtcctcc tgcagcaccg ccaggatgcg ccggtcgatg gcgtcgagcg
      781 cggtcggcgc acgggccttg cgatcgggtc ttttcatgga tttcgtggtg atggccatcg
      841 gacatcccag agcgacaaga acggaaggaa agttcgaaat ttcgtagcac ggatttcgtt
      901 ctaccctgaa cgcgaaaacc gaacctcaca tgccgcgagg ccgccatgaa cgaagccgtc
      961 cgctcgaacc gcatcgaagt ccatgaccgc gacgcgctcg ccaaggcgcg cgctgtgctc
     1021 gatgcctgcg cggatgcacg cgagatgggg gagagcatcg ccgccgccgt caggcgcaat
     1081 gcgcaatggc gcggcgaaga gtgcatcaat ctcctggcgc ccgaagcgcc gacgagccct
     1141 ggcgtgcgcg cgctgctcgc agccgagatc ggcacgcgcg ccgccgaagg ccatatcggc
     1201 ccggtcaacc gctggttcgc gggcacgcgt cacatcgacg aggtcgaggc gttgtgcgtc
     1261 gagctgctca agcgtcattt ccactgcgct tatgccgacc atcgcatgtg cgcctcgatg
     1321 atcggaaacg cggtggtcta taccgcgctg tcgcagccgg gcgatgtggt gatgagcgca
     1381 gcccagccga ttggcggcca ttcgtccaac cgcatcgacg ggccggccgg cgcgatgggc
     1441 cgcaaggtgg tcgatattcc gttcgacccg cacgagctcg tggtcgacat cgatctcttc
     1501 cgccgggcgg cgccgctggt tcggcccaag ctggtcgccc tcggtctctc catgacgctt
     1561 ttcccgcagc cggtcgcggc catgaagcag gtgatcgccg agtggggcgg gcggctgttc
     1621 ttcgacgccg cccatcagct cggcctgatt ggcggcaagc agttccaggc ccccttgaag
     1681 gaaggggccg acataatgac cggctccgcc ggcaagactt tttcgggccc gcagtccggc
     1741 atcatcgtgt gggacgatcc ggagatcacc gagcccgtga ccacggcagt atttcctgtc
     1801 tgggccgcga cccatcaggt aaaccgcgtc gcggcgctgg cgctcgcgac tgccgaggcg
     1861 atcgcgttcg gcgaagcgct ccaggcgcag atcgtcaaga acgcgcgcgc gctcgcagcc
     1921 gccctgcacg cgcgcggcat cccgctgctg gggagccaca agggcttcac caccacgcat
     1981 caggcgatcg ccgatgtccg ccaatacggc cggggcttga aggccgcgca gacgctcgag
     2041 cgcgccaaca tcatcgtcaa caagaacctg ctgcccgccg accgcaagga ggattgggac
     2101 tatccgggcg gcttgcgcat cggcaccatc gaggtcacgc gcttcggcat gaaggagacc
     2161 gagatggagg cgatcgccga cttgatcgcg cgggttatcg tgcgcggcga gagcccggag
     2221 agcgtacgtc ccgaggcgat cgcgctcagg cattcattcc cgactctcta ttactgtttc
     2281 gaaagtggct tgccgaagtg aggtgcggcc gtcttcttgc gcggccagtt tgcaattcga
     2341 gatcgcgtcg tagacgaggc gattgatcgc ttccgcgtta tgacgcgcat ggcagcgaac
     2401 cacggcctcg ttcatgatgt agagcaccga ccaggaccgc accgtctctg atctgcgccg
     2461 tcatcgacgc cgcaactgcc tggatagcca ggcggtccga atgtcaccgc ggcgccatag
     2521 ccgttccaca atggatgatg tccgctcctg cacgatgagc agccgcgctc gcgcgggtgc
     2581 gcataggcgc gttttgaacc ccgaagggga caatcgggct gcaataacgg tctcgcggtt
     2641 ggcgccgtcg acgaacccga gggtcggcga ccgcaccatg agctgccgtc cttggccgtg
     2701 agaaccccct atcccacctc ggccctccgg ctgaaacgac tcaacatagc gccttgcccg
     2761 cgataggctt tctgcctcgg cgatttccga cgaggggaat cgagtgaggc tgctggtcat
     2821 cgtgctcgcc gtgctcgccg cctcgacggc ggctgtggcg caagagaagg cgtggcggct
     2881 tggtgtgctg acgcctggac gggaaacccg cggagccggc agccttttca gcagcactct
     2941 gccggtcctc gccgagcgcg ggttcgttga gggccgcaat ctcgaggtca tcatcgctgc
     3001 ggcggagggc gatccggcgc ggctgccgag ccttgcagcg gcgctggccg acgcgcggcc
     3061 ggacgccata atcacgatcg gcacgcaggc gacggacgcg gcgctcgccg ccgcgccgag
     3121 gacgccgatc gtgctgtcgt tcgccggtca ggacccggtc gagaccgggc acgcccggag
     3181 cctcgcgcgg ccgggcgggc gcgtgacagg gatcttcttc cgcgccgttg agaccgatgc
     3241 caagcggctc gagctcctcg tcgaggcgat cccggacgcg aagcatttcg gattcctcgc
     3301 cgcgccgaca ctcgagcccg cgcgcgccga gttcctggcg cgcaccgccg agcgcctcgg
     3361 ggtggtcctg accactcgaa cggcgaccgg cccggcggac ttccccgccg tgtttgcggc
     3421 gcttcaagag gccggcaccg tcggcgtcct cgttcaagcg acaaccctct t
//
LOCUS       DASQVK010000161         3542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_200000,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000161 DASQVK010000000
VERSION     DASQVK010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3542
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200000"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..208
                     /locus_tag="VE567_03375"
     CDS             <1..208
                     /locus_tag="VE567_03375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004207573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47916.1"
                     /translation="TPVCYDGLEQGSPEYGVVVHCWLDDEINAYDCYVAFFGNEEPAG
                     KPPEKPYILRYASTSLTVGRLSDD"
     gene            complement(163..438)
                     /locus_tag="VE567_03380"
     CDS             complement(163..438)
                     /locus_tag="VE567_03380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antitoxin"
                     /protein_id="HYZ47917.1"
                     /translation="MAITVSPFFAVHPGDWLKSEVVEPSGLSVTVLAQRLGVTRQALS
                     TLLNGRAGLSAEMAIRFEKAFGLSADTLLRAQTQSSDRRPTVSDVEA"
     gene            complement(537..1091)
                     /gene="dcd"
                     /locus_tag="VE567_03385"
     CDS             complement(537..1091)
                     /gene="dcd"
                     /locus_tag="VE567_03385"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009394 - 2'-deoxyribonucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HYZ47918.1"
                     /translation="MAILSDRWIRERALADGMIEPFVESQRREGCISYGLSSYGYDAR
                     VADEFKIFTNVDSATVDPKDFASNSFVDRKTDCCIIPPNSFALARTVEYFRVPRDVLV
                     ICLGKSTYARCGIIVNVTPLEPGWEGHVTLEFSNTTPLPAKIYANEGACQFLFLQGNE
                     PCEVSYADRAGKYMGQQGVTLPRL"
     gene            complement(1124..1996)
                     /locus_tag="VE567_03390"
     CDS             complement(1124..1996)
                     /locus_tag="VE567_03390"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYZ47919.1"
                     /translation="MTDAPSRFDVEFWLPDPRLNGLVSGYHCYAVTVPEGERHHDVFF
                     PSWANLRFHSAADVWRVRFGERSFDVPAASLFGPTSRAGYSESGPGAMIGAGLTPLGW
                     HRLTRRAAADFADRVVPLQEILGADANELAEAARAPDLKERFDAVFLRLLSEPRPDEA
                     RITEIHHYLMEPVSVPEMADRVGLSQRTLNRIALSAFGFGPKLLIRRARFLRSLMALR
                     DAPTESWALRIESSYYDHSHFNRDAQEFLGMSPTEFMRLPKPLNDASARLRTRILGAP
                     MQALHQPLRLTGEV"
     gene            complement(2037..2477)
                     /locus_tag="VE567_03395"
     CDS             complement(2037..2477)
                     /locus_tag="VE567_03395"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004126 - cytidine deaminase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0009972 - cytidine deamination [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HYZ47920.1"
                     /translation="MTRDALIEAARQAARNAHAPYSRFGVGAALLLADGSVVTGCNFE
                     NASYGLSLCAETVALATANSQGRLRDVVEIGVVGGAIRPEGLIGLTPVSPCGRCRQVL
                     NEAAQLGGRDLLVHCAAAQGQAVQSYRLSQLLPHAFGPADLGLT"
     gene            complement(2479..2961)
                     /locus_tag="VE567_03400"
     CDS             complement(2479..2961)
                     /locus_tag="VE567_03400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013846242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0262 family protein"
                     /protein_id="HYZ47921.1"
                     /translation="MTDPRIIDIELDEHTILWRSADVEQERRIAIFDILEGNRFAPQR
                     VHPDGYRGPYRIRLRVEEGRLAIDIFREDRSHLETLVLGLARFRRPIKDYFAICESYY
                     QAIRQSTPQQIETVDMARRAIHNEAAELLIERLAGKIEVDFDTARRLFTLICVLHIKG
                     "
     gene            3119..>3542
                     /locus_tag="VE567_03405"
     CDS             3119..>3542
                     /locus_tag="VE567_03405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DnaB-like helicase N-terminal domain-containing
                     protein"
                     /protein_id="HYZ47922.1"
                     /translation="MAEPIRLVPPDPGAPQTLPRNIEAEAALLGALMIDNRLVEDVQL
                     KLKPDHFFEPIHGRIYDALLKLVDKNMVANPVTLKPMFDSDEAMRELGGPAYLAQLTG
                     SGAALIGARDFADQVYDLALLRELVGVGREMVEKALDTS"
BASE COUNT          667 a         1086 c         1166 g          623 t
ORIGIN      
        1 aactcccgtt tgctatgacg gtcttgagca aggtagcccg gaatacgggg tggtcgtcca
       61 ttgctggctc gacgacgaga tcaacgccta tgactgctat gtcgccttct tcggcaacga
      121 ggagccagcg gggaagcctc ccgaaaagcc gtacatccta cgctatgcct cgacgtcact
      181 gacggtcggc cgcctatcgg atgattgagt ctgggcccta agcagcgtgt cagcggagag
      241 gccgaacgcc ttttcaaagc ggatcgccat ttctgcggac aatccagcgc ggccgttgag
      301 cagggtgctc aaggcctggc gggtcactcc caagcgctgg gccagaacgg tcacgctcag
      361 gccgctcggc tccacgactt ccgacttgag ccaatcgccc ggatggacgg cgaagaaggg
      421 ggaaacggtg atcgccatca gtgatagtcc tccaggtcca tatcaacgat cacattgtcg
      481 tcgctgatcc ggaatgtcag tcgccaaccc cgtcgggtgt cagtgacgga cgacgactat
      541 aaccgcggca gcgtcacgcc ttgctggccc atatatttac ccgcgcggtc ggcgtagctc
      601 acttcgcagg gttcgttgcc ctggaggaac aggaactggc aggcgccttc gttggcgtag
      661 attttggccg ggaggggcgt ggtattggag aattccagcg tcacatgacc ttcccaaccg
      721 ggctccagcg gcgtcacgtt cacgatgatg ccgcagcgcg cataggtcga tttgccgagg
      781 cagatgacga gcacgtcgcg gggcacgcgg aaatattcga cggtgcgggc gagcgcgaag
      841 ctgttcggcg ggatgatgca gcaatcggtc ttgcgatcga caaagctgtt cgacgcaaaa
      901 tccttgggat cgacggtggc cgaatcgaca ttggtgaaga tcttgaactc gtcggccacg
      961 cgcgcgtcat agccgtagct cgacagcccg tagctgatac agccttcacg ccgctggctt
     1021 tcgacgaacg gctcgatcat gccgtccgct agcgcgcgtt cccgaatcca gcggtcagat
     1081 agaatcgcca tgcactatgc ctcccgggcg gtgctttcgg gggtcagacc tcgccggtca
     1141 atcgcaaggg ctggtggagc gcctgcattg gcgcgccgag gatgcgggta cgcaggcgag
     1201 cagaggcatc gttgagcggc ttgggcaggc gcatgaactc ggtcggcgac atgcccagaa
     1261 attcctgcgc atcgcggttg aaatgggaat gatcgtaata actgctctca atccgtaagg
     1321 cccagctttc ggttggggca tcccggagcg ccatcagcga gcgcaggaag cgcgcgcggc
     1381 gaatgagcag cttgggcccg aagccgaaag ccgaaagggc gatgcggttc agcgtgcgct
     1441 gcgacaggcc gacccgatcc gccatttcgg gcacgcttac cggctccatc agatagtggt
     1501 ggatttcagt aatcctcgct tcgtcggggc gcggttcgct gaggaggcgg aggaacacgg
     1561 cgtcgaaccg ttccttcagg tcgggcgccc gtgcggcttc ggcgagctcg ttggcatcgg
     1621 ctccaagtat ttcctgcagc ggcacgacgc gatcggcgaa atcggcggcg gcccggcggg
     1681 tcagccgatg ccagcccagc ggcgtcaggc cggcgccgat catcgcgccc ggaccgcttt
     1741 cgctgtagcc ggcgcggctg gtcggcccga acagcgacgc ggcgggcacg tcgaaactgc
     1801 gctcgccgaa ccgtacccgc caaacgtcgg cggcggaatg gaagcgcaga ttggcccagg
     1861 aggggaagaa gacgtcatgg tgccgctcgc cttcgggcac tgtgaccgca tagcaatgat
     1921 aacccgaaac aaggccgttc aggcgcggat cgggcagcca gaattctaca tcgaagcgtg
     1981 agggcgcgtc cgtcatcaca aaaggtaaac ggacccgcac gtcagcaagt tgcacgtcag
     2041 gtaaggccaa gatcggcagg tccgaaggcg tgcggaagaa gctgtgacag gcggtagctt
     2101 tgcaccgcct gtccctgggc ggcggcgcaa tggacgagca ggtcgcggcc gcccaattgc
     2161 gcggcttcat tcagcacttg ccggcagcgg ccacaggggc tcacaggcgt caagccgatc
     2221 agtccctccg gccggatggc cccgccgacc acaccgatct cgaccacatc gcgcagcctg
     2281 ccttggctgt tggcggtggc gagcgcgacg gtctcggcgc agagcgacag gccgtaggat
     2341 gcattctcga agttgcagcc ggtcaccacc gagccgtcgg cgagcagcag cgccgcgccc
     2401 acgccgaagc gcgaataggg cgcatgggca ttgcgcgcgg cctggcgggc ggcttcgatc
     2461 agtgcgtctc gcgtcatatc atcccttgat atgcagcacg cagatcaacg tgaacaggcg
     2521 gcgggcagtg tcgaaatcga cctcgatctt gcccgccagc cgctcgatca gcagttcggc
     2581 ggcctcgttg tggattgcgc ggcgggccat gtcgacggtc tcgatctgct gcggcgtgga
     2641 ctggcggatc gcctggtaat agctctcgca gatcgcgaaa tagtccttga tcggccgccg
     2701 gaagcgagcc agcccgagca ccagcgtttc caaatgcgag cggtcctcgc gaaaaatgtc
     2761 gatcgccagc cggccttcct cgacgcgcag gcggatgcgg taggggcccc gatagccgtc
     2821 ggggtgcacg cgttggggcg cgaaacgatt gccttccagg atgtcgaaaa tcgcgatccg
     2881 ccgctcctgc tcgacatcgg ccgagcgcca caggatcgtg tgctcgtcga gttcgatgtc
     2941 gatgatgcgg ggatcggtca tgctctttcg cgtctagcct cgttcgtcgc gcgcgcgaaa
     3001 gcttgattca ttttcgtccg ggaattccac aggtctggcg agtgcggaac aactcacagc
     3061 ttttccacag acttgctggc ttgagccgga gtccgaaagg gcggagaatg ctcccatcat
     3121 ggctgaaccg atccgactcg tgccgcccga tccgggcgca ccccagactc tgccccgcaa
     3181 catcgaagcc gaggcggctt tgctcggcgc cctgatgatc gacaacaggc tggtcgagga
     3241 tgtgcagctc aagctgaaac ccgaccattt cttcgagccg atccacggcc gcatctatga
     3301 cgcgctcctg aagctcgtcg acaagaacat ggtcgccaac ccggtgacgc tgaagcccat
     3361 gttcgacagc gacgaggcga tgagggagct gggcggcccc gcctatctcg cgcagttgac
     3421 gggcagtggc gccgcgctga tcggcgcgcg cgattttgcc gatcaggttt atgacctggc
     3481 gctgctgcgc gagctggtcg gcgtgggacg cgagatggtc gaaaaggcgc tcgacacgtc
     3541 cg
//
LOCUS       DASQVK010000162         2342 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_263651,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000162 DASQVK010000000
VERSION     DASQVK010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2342
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263651"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..833)
                     /locus_tag="VE567_03410"
     CDS             complement(<1..833)
                     /locus_tag="VE567_03410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47923.1"
                     /translation="MAEAELEQMPAVVARRRNTARIVALVLLGVVTLALLALWLARKP
                     IATNVIDRELARRGVPARYAVKRIGLRTQRIEGVSIGDPRAPDLTADWVEVDLVPTFG
                     TPEVREVRAGGVRVRGRLENGALKLGAVDRLLPGPTGKTFSLPKLRVGLSDAQLALAT
                     PSGNLALRIDGRGSLASGFDGRYALAAPALSAGGCRIAGLDLSGTVRTSGGRPRLAGP
                     LAAFGVTCKDALARAVAGTVDVTFEPGMDGWRGLASLATGGARVQAWQAAGLRGQIDF
                     AG"
     gene            881..1558
                     /gene="radC"
                     /locus_tag="VE567_03415"
     CDS             881..1558
                     /gene="radC"
                     /locus_tag="VE567_03415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010337712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HYZ47924.1"
                     /translation="MTGGEEGAGHRARLRERLLRQGPDALLDHEIIEYLLALVIPRRD
                     TKSLAKRLLNEFGGIGGLFAADAEAIERAGFSETSVAALKIVNAAALRLLAAEIKARP
                     ILNSWNALLDYLRADLAHLGVERVRVLFLNAKNMLIRDELMSEGSTSEAAMYAREVIR
                     RAIDLHASSLILVHNHPSGDPAPSRQDIAATRDIVEAGKRLGIQVHDHVIIGADGHSS
                     MRAMGLL"
     gene            1619..1969
                     /locus_tag="VE567_03420"
     CDS             1619..1969
                     /locus_tag="VE567_03420"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HYZ47925.1"
                     /translation="MANCQTALDATFHALADPTRRAVISRLSKGPAPVKELAEPFGMG
                     LPSFLKHLRVLEKDGLISSEKVGRVRTCRVNAQKLTAAESWLSEQRELWQARTDRLAD
                     YIETQMPRSNGNGG"
     gene            1959..>2342
                     /locus_tag="VE567_03425"
     CDS             1959..>2342
                     /locus_tag="VE567_03425"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HYZ47926.1"
                     /translation="MAAEEAELTIARTIAAPPATVWKAWSTPEHLEKWWIPHPIECKV
                     IKLDLRPGGGFETRMRESGGEFQPHVDGCFLEVVPEARLVFTTVLTEGWRPVDPWLAL
                     TAIITFEPEGSGTRYTARVLHKNATD"
BASE COUNT          414 a          869 c          717 g          342 t
ORIGIN      
        1 cccgcaaaat cgatctgccc gcgcagcccc gccgcctgcc aggcctgcac gcgggcgccg
       61 cctgtcgcca ggctcgccag cccgcgccag ccgtccatcc ccggctcgaa cgtcacgtcc
      121 accgtgcccg cgaccgcgcg cgccagcgca tccttgcaag taacgccgaa cgccgccagc
      181 gggccggcca gacgcggccg cccgccgctg gtccgcacgg tgccgctcag gtccagtccc
      241 gcgatccgac agccacccgc gctcaaagcc ggcgcggcaa gcgcgtagcg gccgtcgaac
      301 ccgctcgcca gactgccacg cccgtcgatc cgcagcgcca aattgcccga aggcgtggcc
      361 agcgccagct gcgcatcgct gaggccgacg cgcaacttgg gcaggctgaa cgtcttgccg
      421 gtcgggcccg gcagcagccg gtcgacggcg ccgagcttca aggcgccatt ttccagccgc
      481 ccgcgcaccc gcacgccgcc cgcgcgcacc tcacgcactt ccggcgtgcc gaaggtcggg
      541 accagatcga cttccaccca gtcggcggtg aggtccggcg cgcgcgggtc gccgatgctg
      601 acgccttcga tccgctgcgt gcgcaacccg atccgcttca ccgcgtagcg cgccggcacc
      661 ccgcgccgcg cgagttcgcg gtcgatcacg ttggtcgcga tcggcttgcg cgccagccac
      721 agtgcgagga gcgccagcgt gaccacgccc agcagcacca gcgccacgat cctggccgta
      781 ttccgccgcc gcgcgacgac ggccggcatt tgctccagct cggcttcagc catgcatgcc
      841 cactagccga accgcccgcc tcctcctaat cctgcgccgc atgacggggg gagaagaggg
      901 agccggacac cgcgcgcgct tgcgcgagcg gctgctgcgc caggggccgg acgccctgct
      961 ggaccacgaa atcatcgaat atctgctcgc cctcgtcatt ccccgccgcg ataccaaatc
     1021 gcttgcgaaa cgcttgctga acgaattcgg tggcattggc gggctgttcg ctgccgacgc
     1081 cgaggcgatc gagcgcgccg gcttcagcga gacgtcggtt gcagcgctga agatcgtcaa
     1141 cgccgccgcc ctgcggctgc tggccgccga gatcaaggcg cggccgatcc tcaacagctg
     1201 gaatgccctt ctcgactatc tccgcgccga tctcgcccat ctgggcgtag agcgggttcg
     1261 cgtgctcttc ctcaacgcca agaacatgct gatccgcgac gaactgatga gcgaaggatc
     1321 gaccagcgaa gcggccatgt acgcccgcga agtgatccgc cgcgcgatcg acctccacgc
     1381 ctccagcctg atcctcgtcc acaatcaccc gagcggcgat cccgccccct cccgccagga
     1441 catcgccgct acccgcgaca tcgtcgaagc cggcaagcgc ctcggcatcc aggtccacga
     1501 ccatgtcatc atcggcgcgg acggccatag cagcatgcgg gcaatggggc tgctttagga
     1561 gcggcgctcc gcatgattca gtttgccaaa cagcaaactg tccgccatag ttctccatat
     1621 ggcaaactgt cagactgcac tcgacgcaac cttccatgcg ctggccgacc ccacacgacg
     1681 ggccgtgatc agccggctct caaagggtcc cgcacccgtc aaggaattgg cggagccttt
     1741 cggcatgggg ctgccatcgt tcctgaagca cctccgggtc cttgagaaag acggcctgat
     1801 cagttccgag aaggttggcc gcgtccgcac ctgccgcgtc aatgcccaga aactgacggc
     1861 ggcagagtcc tggctgtcag agcagcgtga gctttggcag gcgagaacgg atcggcttgc
     1921 cgactatatc gaaacccaga tgccgaggag caatggaaat ggcggctgaa gaagctgaac
     1981 tcacgatcgc gcggacgatc gccgcgccgc cggccaccgt ctggaaggcc tggagcacgc
     2041 ccgagcatct tgagaaatgg tggatacccc accccatcga atgcaaggtc atcaagctgg
     2101 acctccgccc cggcggcggc ttcgagacgc gcatgcggga gagcggcggc gaattccagc
     2161 cgcatgtcga cggctgcttc ctggaggtcg ttcccgaagc ccgtctggtc ttcacgaccg
     2221 ttctcacgga gggctggcgg ccggtcgacc cgtggctcgc attgaccgcc atcatcacgt
     2281 tcgagccgga aggaagcgga acacgctata cggcccgcgt cctgcacaaa aatgccaccg
     2341 ac
//
LOCUS       DASQVK010000163         3885 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_200154,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000163 DASQVK010000000
VERSION     DASQVK010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3885
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200154"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..618
                     /locus_tag="VE567_03430"
     CDS             <1..618
                     /locus_tag="VE567_03430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HYZ47927.1"
                     /translation="TFRNNGAPAIESHVDHPQESAIFSRYPRLLADHHLIEFICDYLR
                     MMTVNLEDPHQIEAAMEADIEMHHYEELEPQHALQIMADGLPAIGIIAAVLGVIKTMG
                     SIDAPTEVLGAMIGGALVGTFLGVLLSYCVVGPLASKLRGIVDDDSQPFRIAKTAIVA
                     YAQGMPVQVAVEIARRMTPSRHAPTFQQLESALDEAKNELSTVAV"
     gene            593..916
                     /locus_tag="VE567_03435"
     CDS             593..916
                     /locus_tag="VE567_03435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019367849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HYZ47928.1"
                     /translation="MNSPLSPSKWSEDRSLRLPAHCNTVAAEDLKVRLVLAADLDDEI
                     RIDASQVESLGQAVLQLLVATCVEADAKSLAFEITDPSAAFIDRVTRCGMAARLGLQG
                     ERDRH"
     gene            913..1278
                     /locus_tag="VE567_03440"
     CDS             913..1278
                     /locus_tag="VE567_03440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYZ47929.1"
                     /translation="MSKVILTVDDSASMRMLLKASLTAQGFTLECANDGAQGLKRMQE
                     VKPDLLITDINMPKMDGFELIEAVRKLPEFRGTPILVLSTEFSDDKKARARAAGATGW
                     ITKPFDTEKLGAAIRRVCP"
     gene            1275..3392
                     /locus_tag="VE567_03445"
     CDS             1275..3392
                     /locus_tag="VE567_03445"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheA"
                     /protein_id="HYZ47930.1"
                     /translation="MSDDFGEIQAIFFEECVEGLGVAEAGLSAMADGDVSTETIAGVF
                     RAVHSIKGGSGAFGHAALLAFSHRFENFLDEVRAGRIPASASVVKAMLSAFDVLSDHV
                     SAAQGQSAPPHDAAILAKLDEILETNGASPAGSPALAAVAPAPAEADEIGFTPVPAMV
                     EEFDPFAFEPVPVSFNDFEAAPEPARDWIVRFGPSRDALANGGEPLLVIRELERLGGR
                     VTDCDSAALPPLRELDPEASYFVWTITLPGTVEQQEISDCFDFVAPNSLIEIGRAAAP
                     ASLPAPPALKLVSSAPQAAAPKADRWEKTAGQDTQTIRVDLAKLDQLLNLVGELVIRG
                     SILADRLAPADQERVELPQLARLTRQIQDSVMSLRAQPIRQAFSRVPRMLRELSTETG
                     KHVLLEVEGETTEVDKSVIEKIGDPLTHMIRNAVDHGIESAEERIAVGKSPEGRIHLS
                     AEQKGARILVRVQDDGRGIDRARVRAKAVEKGIIPADLPLSDEEIDQLICAPGFSTAE
                     AISNISGRGVGMDVVRSNVEALGGRVEIQSVPGAGTTFTMILPLTLAILDGMIVRLGG
                     QRFVLPLASVVETVRPEAGQVRPVSPTSETLELRGNYLPVKRLSRFFGLEGRDPRRPE
                     ESLVIVVESDTAGPMGLMVDTIDGRREVVIKSLEQNLHPIRGLGGATILGDGSIALII
                     DLETLIASPAPTAPKRALQGLAA"
     gene            3389..3877
                     /locus_tag="VE567_03450"
     CDS             3389..3877
                     /locus_tag="VE567_03450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010545192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HYZ47931.1"
                     /translation="MTSTDSGERKIVTFSLGDKTFGIDMLALVEIREWEEPTPLPRVP
                     SYIKGVSNLRGTVIPIVCLAERLGWEPSVPHSRSCVLVANVAGKQAGFLVDDVAEIVL
                     IKDSEIRPAPDLDIEESHVIAGLVRLNARVQGGQKGEGGAMVLLLDHEALNLTRQMEL
                     VA"
BASE COUNT          706 a         1262 c         1229 g          688 t
ORIGIN      
        1 acgtttcgga acaatggcgc gccggcaatc gaatcccatg tcgaccaccc gcaggaaagc
       61 gcgatctttt cccgctatcc gcgtctgctc gccgatcatc atctgatcga gttcatttgc
      121 gattacttga gaatgatgac ggtcaatctg gaggatccgc accagatcga agctgcgatg
      181 gaagctgaca tcgaaatgca tcattacgag gagctggagc cgcagcacgc cctccagatc
      241 atggcggacg gcctgccggc gatcggcatc atcgccgccg tgcttggcgt catcaagacc
      301 atgggctcta tcgacgcacc gaccgaagtg ctcggcgcaa tgatcggcgg cgcactcgtc
      361 ggcacgtttc tgggcgtcct gttgtcttac tgcgtcgtcg ggccgctcgc atccaagctg
      421 cgcggcatcg tcgacgatga cagccaaccg ttcagaatcg cgaaaaccgc gatcgtcgcc
      481 tacgcgcagg gcatgccggt ccaggtcgcg gtcgaaatcg cgcgacgcat gacgccgagc
      541 cgccacgcgc cgactttcca gcagctcgag agcgccctcg acgaggcgaa aaatgaactc
      601 tccactgtcg ccgtctaagt ggtccgaaga ccgttcgctg cggctgccgg cgcattgcaa
      661 cacggttgcg gcggaggatc tcaaggttcg gctcgtcctg gccgcggacc tcgacgacga
      721 aatccggatc gatgcgtcgc aggtcgagag cctcggccag gccgtgctgc agctgctcgt
      781 cgcgacgtgc gtcgaagcgg acgcaaagtc tctcgcgttt gaaatcaccg accccagcgc
      841 cgcctttatc gaccgcgtca cccggtgcgg catggccgca aggcttgggc ttcaaggcga
      901 aagggaccga cattgagcaa ggtcatcctg actgtggacg attcggcaag catgcggatg
      961 ctgctgaagg catcgttgac cgcgcagggc ttcacgctcg aatgcgccaa tgacggcgcg
     1021 caggggctga agcgcatgca ggaggtcaag cccgaccttc tcatcaccga catcaatatg
     1081 cccaagatgg acggtttcga gctgatcgag gcggtgcgga agctgcccga gtttcgcggc
     1141 acgcccattc tcgttctctc aaccgaattt tccgacgaca agaaggcgcg ggcgcgtgcg
     1201 gcaggcgcca ccggctggat caccaagcct ttcgacacag agaagctggg cgcggcgatc
     1261 cgccgggtct gcccgtgagc gacgatttcg gcgaaatcca ggctatcttc ttcgaggaat
     1321 gcgtcgaagg acttggcgtc gcggaggccg gtttgtcggc gatggccgac ggtgatgtct
     1381 cgaccgagac gattgcgggt gtgttccgcg ccgtccactc gatcaagggc ggctccggcg
     1441 cgttcggcca tgcggcgctg ctcgctttct cgcatcgctt cgagaatttt ctcgacgagg
     1501 ttcgtgccgg ccgcattccg gcgagcgcga gcgtcgtgaa agcgatgctc agcgccttcg
     1561 atgtcctgtc ggatcatgtt agcgctgctc agggacaatc cgcgccgccc cacgatgcgg
     1621 cgatattggc caagctcgat gaaatcctgg agaccaacgg cgcgtcaccg gcggggtcgc
     1681 ctgcgctcgc tgccgtagcg cctgcgccgg ccgaggcgga cgagatcggc ttcacgcctg
     1741 tccccgccat ggtcgaggaa ttcgatccat tcgccttcga gccggtgccg gtctcgttta
     1801 atgatttcga agcagcgccc gaaccggccc gcgattggat tgttcgcttt ggtccctcgc
     1861 gggacgcgct tgcaaatggc ggtgagccgt tgcttgtcat ccgggagctg gagcggctcg
     1921 gcggacgcgt taccgactgc gacagcgccg ccctgccgcc gctgcgcgaa ctcgatccgg
     1981 aagcgagcta cttcgtctgg acgatcaccc tgccgggcac ggtcgagcag caggaaatca
     2041 gcgattgctt cgatttcgtc gcccctaact cgctcatcga gatcggccgc gctgccgcgc
     2101 ctgccagctt acccgcacca cctgcactca agcttgtctc gtccgcgcct caggcagccg
     2161 cgccgaaggc cgaccgatgg gagaaaacgg ccggccagga cacgcagaca attcgcgtcg
     2221 atctggccaa gctcgaccaa ttgctgaacc tggtgggcga actcgtgatc cgcggttcca
     2281 tcctcgccga tcggctggcg ccggcggacc aggaacgcgt cgagctccca cagctcgcgc
     2341 gcctgacccg gcagatccag gacagcgtca tgtcgctgcg cgcccagccg atccggcagg
     2401 cattttcccg cgtgccgcgc atgctgcgcg agctctccac ggagacgggc aagcacgtct
     2461 tgcttgaggt cgaaggggag acgaccgagg tcgacaaaag cgtgatcgaa aagatcggcg
     2521 atccgctcac acacatgatc cgcaatgccg tcgatcacgg catcgaaagc gccgaggagc
     2581 ggatcgcggt aggcaagtcg cccgagggcc gcatccattt gtcggccgag cagaaaggcg
     2641 cgcggatcct ggttcgcgtg caggacgatg gccgcggtat cgaccgcgcc cgcgtccgcg
     2701 ccaaggcagt cgaaaagggc atcatcccgg ccgatctgcc gctctccgac gaggagattg
     2761 accagctgat ctgcgcgcct ggcttctcca cggccgaggc gatctcgaac atatccggcc
     2821 gcggggtcgg tatggacgtg gtccgctcca acgtcgaggc attgggcggc cgggtcgaga
     2881 tccagtcggt accgggagca ggcacgacct ttaccatgat cctgccgctt accctggcca
     2941 tcctggacgg catgatcgtt cgcctcggcg gccagcgctt cgtcctgccg ctggcgagcg
     3001 tcgtagaaac ggtgcggccg gaggctggcc aggtgcgccc ggtctcgccg accagcgaga
     3061 ccctagagct gcgcggcaac tacctgcccg tgaagcgcct gagccgcttc ttcgggctcg
     3121 aaggtcggga tccgcgcagg cccgaggaat cgctcgtgat cgtggtcgag agcgacaccg
     3181 ccggcccaat gggtctcatg gtcgatacga tcgacggccg ccgcgaagtg gtgatcaaga
     3241 gcctcgaaca gaacctccat ccgatacgcg gtctgggcgg cgctacgatc ctcggtgacg
     3301 gatcgatcgc gctcatcatc gaccttgaaa cactgatcgc ttcgcctgct cctaccgccc
     3361 ccaagcgcgc tctccaagga cttgcagcat gacctccacc gatagcgggg aacgcaagat
     3421 cgtcaccttc tcgcttggcg ataaaacctt cggcatcgac atgctggcgc ttgtggaaat
     3481 ccgcgaatgg gaagagccta ccccgcttcc acgcgtcccg tcctatataa agggcgtctc
     3541 caacctgcgc ggcaccgtga tcccgattgt ttgcctggcc gagcgcctcg gctgggagcc
     3601 tagcgtgccg cactcgcgct cctgcgttct ggttgcgaac gttgccggca agcaggcggg
     3661 cttcctggtg gacgatgtcg cggagattgt cctcatcaaa gacagcgaaa tccggcccgc
     3721 acccgatctc gatatcgaag agagccacgt catcgcgggc ctcgtccggc tcaatgcgcg
     3781 cgtacagggc ggccagaagg gcgagggcgg cgcgatggtg ttgctgctcg atcacgaggc
     3841 actgaacctc acgcgccaga tggaactggt tgcgtgacgc agaat
//
LOCUS       DASQVK010000164         2558 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_263779,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000164 DASQVK010000000
VERSION     DASQVK010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2558
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263779"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1065
                     /locus_tag="VE567_03455"
     CDS             <1..1065
                     /locus_tag="VE567_03455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010216579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid--CoA ligase family protein"
                     /protein_id="HYZ47932.1"
                     /translation="FYTSGTTGAPKGALGTHRNLVTNILSGGYNSARAFLRRGETPPL
                     PQPKTFLTVIPLFHVTACSATLMGATTMGNTLVFMRKWDAVEAMRLIERERVNVTGGV
                     PTIAWQLLEHPERHKFDLSSLEGIAYGGAPSPPELVRRIYAEFGALPGNGWGMTETMA
                     TVTGHSAEDYLHRPDSAGPPVPVADLEIRADDGVTVLPRGMVGELWAKGPMIVRGYWD
                     KPEATAQTFIDGWVRTGDLARLDEEGFLFIVDRAKDMIIRGGENIYSIEVENALYDHP
                     AVTDAALIGLPHKTLGEEPAAVVHLAPGMDATEAELQDWVRTRLAPFKVPVRIVFLPD
                     PLPRNANGKILKRQLKELFA"
     gene            complement(1054..1842)
                     /locus_tag="VE567_03460"
     CDS             complement(1054..1842)
                     /locus_tag="VE567_03460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYZ47933.1"
                     /translation="MRKAIFITGGGSGIGQAAAVLFAKRGWFVGLADINEAGMTATAR
                     LIGPKNAFVAKMDVRDRAQWRDALQRFVEASGGRLDVLFNNAGVGHGGPFELMDDDKR
                     DLVIDVNLKGVMYGAEAGLPHLKATPGSCLLNTCSAAGFYAGPHMAVYAASKFGVRAM
                     TDSLDAEWQAHGVKVRSIMPSFIDTPLLDAVAAGSNQSGRETVKAMGLEFTPVEEVAE
                     AAWNTVHGKKRHVLVGRTARRLAFFVRWAPFLLDRMGPKQPSSE"
     gene            1869..>2558
                     /locus_tag="VE567_03465"
     CDS             1869..>2558
                     /locus_tag="VE567_03465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYZ47934.1"
                     /translation="MQVRFDAICKRFGEVLAVDAVTAEIAAGSFVALVGSSGSGKSTL
                     LKTVNRLVLPDSGRVLLDGEDVADEEPHRLRRGIGYVFQDVGLFPHMPVAENIAIGFR
                     LEGRRADGRVSELLELVGLAPDVASRMPDQLSGGQRQRVGVARALALAPKLMLMDEPF
                     GALDPVTRDTLGRAYRALHDRLGLTTIMVTHDMTEALLLADRVLVMAAGRIVGDGTPA
                     ELLAETAGPEAA"
BASE COUNT          420 a          851 c          848 g          439 t
ORIGIN      
        1 ttctacacca gcggtaccac cggggcgccc aaaggcgcgc tcggcacgca ccgtaatctc
       61 gtcaccaaca tcctttcggg cggctacaac agcgcacgcg ccttcctgcg ccgtggcgaa
      121 acgccgccgc ttccccagcc aaagacattc ctgaccgtca ttccgctttt tcacgtgacg
      181 gcatgcagcg cgacgctgat gggcgcgacc acgatgggca atacgctcgt cttcatgcgc
      241 aaatgggatg cggtagaggc gatgcgcctg atcgagcgcg agcgggtcaa cgtgaccggc
      301 ggggtgccga cgatcgcctg gcaactcctg gagcatcccg agcggcacaa attcgacctc
      361 tccagcctgg aagggatcgc ctatggcggc gcgccgtcgc cgccggagct ggtgcggcgc
      421 atatatgcgg agttcggtgc gctgccgggc aatggctggg ggatgaccga gacgatggcg
      481 accgtcactg gccattcggc cgaggactat ctccatcgcc ccgacagcgc cggtccgcca
      541 gtgcctgtcg ccgatctgga gatccgcgcg gacgatggcg tgacggtgct gccgcggggc
      601 atggtgggag agctttgggc caaagggccg atgatcgtcc gcggttattg ggacaagccc
      661 gaagccacgg cccagacctt tatcgatggc tgggtgcgca ctggcgacct cgcccggctg
      721 gacgaggaag ggtttctctt catcgtcgac cgcgcgaagg acatgatcat ccggggcggc
      781 gagaatatct attcgatcga agttgagaac gcgctttacg atcatccggc ggttaccgac
      841 gcagcgctga tcggactgcc gcacaagacg ctcggcgagg agccggcggc cgtggtccat
      901 cttgcgccgg gcatggatgc gaccgaggca gagcttcagg actgggtccg cacccgcctc
      961 gcgccgttca aagtgccggt gcggatcgtc ttcctgcccg acccgctgcc caggaacgcc
     1021 aacggcaaga tcctgaaacg gcagctgaaa gagctattcg cttgagggct gcttcggccc
     1081 catccggtct agcaggaaag gcgcccagcg gacgaaaaaa gcgagccgcc tggcggttcg
     1141 gccgacgagc acgtgccgtt ttttcccgtg caccgtgttc caagccgctt cggcgacttc
     1201 ttcgacaggc gtgaattcca ggcccatcgc ctttaccgtc tcgcggcccg actggttcga
     1261 ccccgcggcc accgcgtcga gcaaaggcgt atcgatgaag ctgggcatga tcgagcgcac
     1321 cttgacgcca tgcgcctgcc attccgcgtc gagcgaatcc gtcatagccc gcacgccgaa
     1381 tttgctcgcc gcatacaccg ccatgtgcgg gccggcgtag aatccggccg ccgagcaggt
     1441 gttgagcagg cacgaccccg gcgtcgcctt cagatgcggc agccccgcct cggcgccgta
     1501 catcacgcct ttcagattga cgtcgatgac aaggtcgcgc ttgtcgtcgt ccatcagctc
     1561 gaacgggccg ccatggccga cgccggcgtt gttgaagagc acgtcgagcc gcccgccgct
     1621 tgcctcgacg aagcgctgca aagcatcgcg ccattgcgcc cgatcgcgca cgtccatttt
     1681 cgcgacgaac gcgtttttcg gcccgatcag ccgcgccgtg gcggtcatgc cggcttcgtt
     1741 gatgtcggcc aggccaacga accagccgcg cttggcgaac agcaccgcgg ccgcttgccc
     1801 gatgcccgac ccgccaccgg tgatgaagat cgccttgcgc atgtctcacc ctcttctaag
     1861 cttgcggcat gcaagtccgc ttcgatgcta tttgcaagcg cttcggcgag gttctggcag
     1921 tcgatgcggt gacggccgag atcgcggccg gcagcttcgt cgcgctggta ggcagctcgg
     1981 gatcgggcaa gtcgacgctg ctcaagaccg taaaccggct ggtcttgccg gactccggcc
     2041 gcgtgctgct ggacggcgaa gacgtggcgg atgaggagcc gcaccggttg cggcgcggca
     2101 tcggctatgt ttttcaggat gtggggctgt tcccgcacat gccggtcgcc gagaatatcg
     2161 caatcggctt tcggctggag gggcggcgtg ccgacggccg cgtgagcgag ttgctggagc
     2221 tggtcgggct cgcgcccgat gtcgcgagcc gcatgcccga ccagctttcg ggcgggcagc
     2281 gccagcgggt cggcgtcgcg cgcgcgctgg cgctcgcgcc caagctgatg ctgatggacg
     2341 agccgttcgg cgcgctcgat cccgtcaccc gcgatactct cggccgcgcc tatcgtgcgc
     2401 tgcacgaccg gctgggcctc accacgatca tggtgacgca cgacatgacg gaagcgctgc
     2461 tgctcgcgga tcgcgtgctg gtgatggccg caggccgcat cgttggcgac ggcacgcccg
     2521 ccgagttgct tgccgagacc gcaggacccg aggcggcc
//
LOCUS       DASQVK010000165         4489 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_42134, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000165 DASQVK010000000
VERSION     DASQVK010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4489
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42134"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..420
                     /locus_tag="VE567_03470"
     CDS             <1..420
                     /locus_tag="VE567_03470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011543336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYZ47935.1"
                     /translation="AMMERGRGSIICTASVAGLRSGAGAPHYSASKAGVINLVQVAAQ
                     QLSATNVRVNAICPGLIQTGMTQRAFDYAAEKGVTDKIGRLNPLRRAGQPDEIASVAA
                     FLASDDASYVNGQAIVVDGGLSSSHPVTRQETGKTTA"
     gene            443..2476
                     /locus_tag="VE567_03475"
     CDS             443..2476
                     /locus_tag="VE567_03475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010187308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HYZ47936.1"
                     /translation="MTSPITTEVRDGILIVTSNNPPVNALGAAVRQGLAAAIEQLEGD
                     PELKAAVIRCEGRTFFAGADITEFGKPPVEPMLPAVVDKIEASAKPVVAAIHGTALGG
                     GLEVALGCHYRVAVPSAKLGVPEVKLGLLPGAGGTQRLPRVAGIEAAAEMCATGNPIP
                     AAKAVQVGLVDKIAEEGQLLETALEFVRSMMGVEPRRSREMPVHGDPAFIQTFATENA
                     KKFRGFDAPAANLRCVQAAVELPFDQGIAFERQEFMKLMMGTQSAAQRHIFFAERQAA
                     KIDGSPEDIQLRAINKVGVIGAGTMGGGISMNFLQAGIPVTIVEAAQENLDRGVGVIR
                     KNYEASAAKGRFKPEQVEQYMGALTPTLDFEALADCDLIIEAIYENMDVKKETFAKLD
                     KIAKPGAILASNTSYLDINEIATATSRPQDVLGMHFFSPANVMKLLEVVRGAKTAPDV
                     LATAMAIGKKIGKVAVVAGVCHGFIGNRMLMPRQVEAMKLLMEGATPAQIDKVHVDFG
                     MPMGPFQMSDLAGVDIGWHRDPNRIENVRDALCAKGRWGQKTGKGFYDYDEKRRPSPS
                     SEVEQILEEFRAKSGGTKREITDEEIIERTLYPMVNEGALILEEGIAQRASDIDVVWI
                     YGYGWPVYRGGPMFWADTEGNDKIAAGLEKHGFTVAKLLKEKAETKGRFTRPV"
     gene            complement(2508..3323)
                     /locus_tag="VE567_03480"
     CDS             complement(2508..3323)
                     /locus_tag="VE567_03480"
                     /inference="COORDINATES: protein motif:HMM:NF012981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HYZ47937.1"
                     /translation="MNKLWLITNPHSGSAAGEKCAAIEAVCEDKGLAFAGRTNFPDEP
                     LPGPDQLGDADTVLLFAGDGTINAALRKLEGWDGAVLILPGGTMNMLAKRLHGTADAG
                     DIVHAAHAEKRTTALPYIEAGEERAFVGVIAGPVTAWAEAREAVREGDLAKLPAAAAA
                     AWSRSWEQEVALHDGEMLLGRYNAVYAEPRQGGLAVAGIAAERIADLAKLGWAWIAGD
                     WRAAAPVDDRLTSAAILSADGGVKALFDGEEAVLESPATLTAGVSALRFLTTA"
     gene            3366..>4489
                     /locus_tag="VE567_03485"
     CDS             3366..>4489
                     /locus_tag="VE567_03485"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017184013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0006106 - fumarate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006108 - malate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HYZ47938.1"
                     /translation="MTDTRTETDSIGPIEVPASAYWGAQTQRSIENFPFGPEERMPIG
                     IVHALAIVKQAASRVNRKHGLPAEIADAIEAAAADVAAGRFDDQFPLVIWQTGSGTQS
                     NMNVNEVIAGISNERLTGKRGGKAPVHPNDHVNMSQSSNDSFPTAMHIAAALASMRKL
                     VPAIERLEGVLLAKTEAWHDIVKIGRTHLQDATPLTLGQEFSGYYAQVRLARTRLLPL
                     IEHGLCKLAQGGTAVGTGLNAPSGFDKDVAAEIAAITGLPFETAPNKFEALASHDTLV
                     DFSGRLNTLAVALTKIANDMRLLGSGPRSGLGELELPANEPGSSIMPGKVNPTQAEML
                     TMVAAQVMGNHTAITIGGLQGHLELNVFKPLIGAAVLRSI"
BASE COUNT          801 a         1507 c         1464 g          717 t
ORIGIN      
        1 gcgatgatgg agcggggacg cggctcgatc atctgcaccg cctcggtcgc gggcctccgc
       61 tcgggcgcgg gcgcgccgca ttattccgcg tcgaaagcgg gcgtgatcaa tctggtgcag
      121 gtcgccgccc agcagctttc ggccaccaat gtgcgtgtga acgcgatctg ccccggcctt
      181 atccagaccg ggatgaccca gcgcgcattc gactatgcgg cggagaaagg cgtgaccgac
      241 aagatcgggc gcctgaaccc gctgcgccgc gccggccagc ccgatgagat cgcctcggtt
      301 gccgccttcc tcgcgtccga cgatgccagc tatgtcaacg gccaggcgat cgtcgtcgat
      361 ggcggccttt ccagttccca tccggtcacc cgtcaggaga cgggcaagac gaccgcctag
      421 tatcgatgct caggagatac caatgaccag ccccatcacc accgaagtcc gcgacggcat
      481 cctgatcgtc acgtccaaca atccgccggt gaacgcactc ggcgcggccg tccgccaggg
      541 tcttgccgcc gcgatcgagc agctcgaagg cgatcccgag ctcaaggccg cggtgatccg
      601 ctgcgaaggc cgcactttct tcgccggggc cgacattacc gagttcggca agccgccggt
      661 cgagccgatg cttccggcgg tggtcgacaa gatcgaggct tccgccaagc ccgtggtcgc
      721 cgcgatccac ggcacggcgc tcggcggcgg cctcgaagtg gcgcttggct gccactaccg
      781 tgtcgctgtc ccgtccgcga agctcggcgt gcctgaagtg aagctcggcc tgctccccgg
      841 tgcgggcggc acgcagcgcc tgccgcgcgt ggccggcatc gaagcggccg ccgagatgtg
      901 cgcgaccggc aatccaatcc cggccgccaa ggccgtccag gtgggcctgg tggacaagat
      961 cgcggaggaa gggcagctgc tcgaaaccgc gctggagttc gtcaggtcga tgatgggcgt
     1021 cgagccgcgc cgcagccgcg aaatgccggt gcatggcgac cccgccttca ttcagacatt
     1081 cgcgaccgag aacgccaaga aattccgcgg ctttgacgcg cccgccgcga accttcgctg
     1141 cgtccaggcg gcagtcgagc tgcctttcga tcagggcatc gcgttcgagc gccaggaatt
     1201 catgaagctg atgatgggca cccaatccgc cgctcagcgc cacatcttct tcgccgagcg
     1261 ccaggcagcg aagatcgacg gcagccccga agacatccag ctgcgcgcga tcaacaaggt
     1321 cggcgtgatc ggcgccggca cgatgggcgg cggcatttcg atgaacttcc tccaggccgg
     1381 cattccggtc acgatcgtgg aggcggctca ggagaatctg gatcgcggcg tcggcgtcat
     1441 ccgcaagaat tacgaagctt cggctgccaa gggccgcttc aagcccgagc aggtcgagca
     1501 gtatatgggc gcgcttacgc ccacactgga tttcgaagcg ctcgccgatt gcgacctgat
     1561 catcgaggcg atctatgaga atatggacgt caagaaggag acgttcgcca agctcgacaa
     1621 gatcgcgaag ccgggcgcga tcctcgcctc caacacctcc tatctcgaca tcaacgagat
     1681 cgcgacggcg accagccggc cgcaggatgt gctcggcatg cacttcttct cgccggccaa
     1741 tgtcatgaaa ctgctggagg tggtgcgcgg cgccaagacg gcgcccgacg tgctggccac
     1801 tgcgatggcc atcggcaaga agatcggcaa ggtcgcggtc gtggccggcg tctgccacgg
     1861 ctttatcggc aaccgcatgc tgatgccgcg ccaggtcgaa gcgatgaagc tcttgatgga
     1921 aggcgcgacg cccgctcaga tcgacaaggt ccatgtcgat ttcggcatgc cgatggggcc
     1981 gttccagatg tccgatctcg ccggcgtcga tatcggctgg caccgcgacc cgaaccggat
     2041 cgagaatgtc cgcgacgcac tctgcgccaa gggccgctgg gggcagaaga cgggcaaggg
     2101 cttctatgat tatgacgaga agcgccgccc ctcgccaagc tccgaagtcg agcagatact
     2161 ggaggaattc cgcgccaaat cgggcgggac caagcgcgag atcaccgacg aggagatcat
     2221 cgagcgcacg ctctacccga tggtcaacga aggcgcgctg atcctggagg aaggcatcgc
     2281 ccagcgcgcg tccgacatcg atgtggtgtg gatctacggc tatggctggc cggtctatcg
     2341 cggtggcccg atgttctggg ccgataccga aggcaatgac aagatcgccg cgggcctcga
     2401 gaagcacggc ttcacggttg cgaagctgct gaaggaaaag gccgagacca agggccgttt
     2461 cacccggccg gtttgatgat ggtcttctct ccagcggaga gaggtgccta agcggtcgtc
     2521 aggaaccgga gcgcgctcac cccggcggtg agcgtcgcgg ggctttccag cacggcctct
     2581 tccccgtcga acagcgcctt cacgccgccg tccgcgctca ggatggcggc gctggtgagg
     2641 cggtcgtcga cgggcgcggc ggcgcgccag tcgccggcga tccaggccca gccaagcttg
     2701 gcgaggtcgg caatccgttc ggcggcaatg cccgccacgg cgaggccgcc ctggcgcggc
     2761 tctgcataaa cggcgttgta gcggccgagc agcatttcgc cgtcatgaag cgcgacctcc
     2821 tgctcccagc tccggctcca tgccgcagcg gccgccgccg gcagcttggc gagatcgccc
     2881 tcgcgcacgg cctcccgcgc ttcggcccag gccgtcacag gtccggcgat gacgccgacg
     2941 aacgcgcgtt cttcgcccgc ctcgatatag ggcagcgctg tcgttcgctt ctcggcatgg
     3001 gcggcatgga cgatgtcgcc ggcgtccgcc gtgccgtgga ggcgcttcgc cagcatgttc
     3061 atcgtcccgc ccggcaggat cagcaccgcg ccgtcccagc cttcgagctt gcggagcgct
     3121 gcgttgatcg tcccgtcgcc tgcgaacaac agcacggtat ccgcatcgcc cagctggtcg
     3181 ggaccgggca gcggctcgtc agggaaattg gtgcggccgg caaaggccag gcccttgtct
     3241 tcgcacaccg cctcgatcgc cgcgcatttt tcgccggcgg cggagcccga atgcgggttg
     3301 gtgatcagcc acagcttgtt cataggcgtt cctcacgggt cctttcagcg caaggtgaaa
     3361 cgccgatgac cgacactcgc accgaaaccg acagcatcgg gccgatagag gtccccgcct
     3421 ccgcctattg gggcgcgcag acccagcgat cgatcgagaa tttccccttc ggccctgaag
     3481 aacgcatgcc gatcggaatc gtgcacgcgc ttgcgatcgt gaagcaggcg gcgagccgtg
     3541 tgaaccgcaa gcacggcctt cccgcggaga tcgccgacgc gatcgaagcg gcggcggcgg
     3601 acgtcgcggc gggccggttc gacgaccaat tcccgctcgt catctggcag accgggtccg
     3661 gtacccaatc gaacatgaac gtgaacgaag tgattgccgg catctccaac gaacggctga
     3721 cgggcaagcg cggcggcaag gcgccggtcc acccgaacga tcacgtcaac atgtcgcaat
     3781 cctcgaacga cagcttcccc actgcgatgc atatcgcggc ggctctggcc tccatgcgga
     3841 agctggtccc ggcgatcgag cggctcgaag gcgtgctgct cgccaagacc gaggcctggc
     3901 acgacatcgt caagatcggc cgcacgcatc tccaggatgc gacgccgctg accttggggc
     3961 aggaattctc cggctattac gcgcaggtca ggcttgcgcg cacccgtctg ctgccgctga
     4021 tcgagcatgg cctgtgcaag ctcgcgcaag gcggcaccgc ggtcggcacg gggctgaacg
     4081 cgccgtccgg cttcgacaag gatgttgcgg cggaaatcgc ggccattacc ggcctgccct
     4141 tcgaaacggc cccaaacaaa ttcgaggcgc tggcgagcca tgacacgctg gtcgactttt
     4201 cgggccggct gaacacgctc gcagtcgcgc tcaccaagat cgccaacgac atgcgcctgc
     4261 tcggctccgg cccgcgttcc ggtttgggcg agctggagtt gccggccaat gagcccggca
     4321 gctcgatcat gcccggcaag gtcaatccca cccaggccga gatgctgacg atggtcgcgg
     4381 cccaggtgat gggcaatcac accgcaatca cgatcggcgg gctccagggt catcttgagc
     4441 tcaacgtatt caagccgctg atcggggccg ccgtgctgcg ttcgatcca
//
LOCUS       DASQVK010000166         2991 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_232033,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000166 DASQVK010000000
VERSION     DASQVK010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2991)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2991)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2991
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232033"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..305)
                     /locus_tag="VE567_03490"
     CDS             complement(<1..305)
                     /locus_tag="VE567_03490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011414752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HYZ47939.1"
                     /translation="MLVLGIETTCDETAAAVVERRSDGSGRILSNIVRSQTEEHARFG
                     GVVPEIAARAHVDLLDGIIDRAMKEAGTDYAQLSAVAAAAGPGLIGGVIVGLTTAKA"
     gene            429..1166
                     /locus_tag="VE567_03495"
     CDS             429..1166
                     /locus_tag="VE567_03495"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HYZ47940.1"
                     /translation="MAVLVTRPHPDGEATAETLRARGFEVLLAPMLQVEQVAFHDDAE
                     ARYDAVIVTSANALRAIAHELEGSRILKLPLFAVGEHTAATARDAGFAAVISAKGDAE
                     ALRKLLLARVKARQLKKSATLLYLAGAELARDLAAELGEKGFTVITRTTYRMVPVSRL
                     PQEVCDAFMAHRIKAVLHYSRRSARAFLDAARTGGVEISALALPQCCISASVAAILHD
                     AGATQVMTAASPDEKALLEALARALRV"
     gene            1318..2559
                     /locus_tag="VE567_03500"
     CDS             1318..2559
                     /locus_tag="VE567_03500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47941.1"
                     /translation="MVDDRPEDIGPLTDPDRPKRAPPTIDLQATQVSSEPSSEPPKAG
                     EQPQGEGEPEAQPEGAWAASSSEPSPQPAAPEPLSKPISPWAIAPISGAVAAALVIGV
                     GWLLGWPAVQTPSPAAPQVSAAAVDELTTRVASLETKANRAAPATDGGTTARIDALEK
                     SIAALRGEVAASRAQSEKLAAAINEVKALPRDSSAPAPDLSGINERIARIDSAVRAQA
                     AALAQQGSQLAAARAADAKPVDDLPLRRVVAASLLDVAVRHGDPFAARLAAAKAVAED
                     ADALKPLEPFAASGIPSAAALCRELLEIVPKLMPAAPNAASAGSGIIDRLQAGAAKLV
                     RIQRTDAGGTDRASVVARITAAALRNDLNTARNELKTLEPADRAPAHAWIDKVDARDA
                     ALAASRKFADGAMAALATANQ"
     gene            2567..>2991
                     /locus_tag="VE567_03505"
     CDS             2567..>2991
                     /locus_tag="VE567_03505"
                     /inference="COORDINATES: protein motif:HMM:NF018875.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme biosynthesis HemY N-terminal
                     domain-containing protein"
                     /protein_id="HYZ47942.1"
                     /translation="MLRIIVFLLLIALAAAGAAWVADQTGDVVLSWGGWRVETALPVF
                     ALGLGLVAVAAVIVWTILRALWRMPAHIRRSRRERRQARGRHAVTQGLLAIGHGDSAS
                     ARAHAETARRHAAHDPLALLLHAQSAQLDGDREGAQRAFR"
BASE COUNT          469 a         1039 c         1005 g          478 t
ORIGIN      
        1 atcgcctttg cggtggtcag gccgacgatg acaccgccga tcaagccggg cccggcggcg
       61 gccgcgaccg ccgacaattg cgcgtaatcc gtgcccgctt ccttcatggc gcggtcgatg
      121 atgccgtcga gcaggtcgac atgggcacgc gcggcgattt ccggcaccac gccgccgaag
      181 cgggcatgct cctcggtctg tgagcgcacg atgttggaca ggatccgccc cgatccgtcg
      241 ctccggcgct cgaccacggc ggctgcggtt tcatcgcagg tggtctcgat acccagcacc
      301 agcattggtc ggtcgttacc caggtttgat ccttgtgcta tcgctcaccc aacaaccggg
      361 tagcatcacg aggtcgcaaa gtgcaatcat ccgctattgc cgaaattccc ttcactaaag
      421 gctgacgcat ggctgttctc gtcacgcgcc cgcatccgga cggcgaggcg accgccgaaa
      481 ccttgcgcgc gcgcggtttc gaggtcctgc tcgcgccaat gctgcaggtc gagcaggtcg
      541 cgttccatga cgacgcggaa gcgcgctatg acgccgtcat tgtcaccagc gccaatgcgc
      601 tgcgcgccat cgcgcacgag ctcgagggca gccgaatcct gaagctgccg ctgtttgcgg
      661 tgggcgaaca taccgccgcc accgcccggg acgccgggtt cgcggcggtg atctcggcca
      721 agggcgacgc ggaagcgttg cgaaagcttc tgcttgcgcg cgtcaaagcc aggcagctga
      781 agaaatccgc caccctgctc tatctcgcgg gcgccgagct cgcgcgcgac cttgcagccg
      841 aactgggtga gaagggcttt accgtgatta cccgcaccac ctaccggatg gttccggtct
      901 cccgcctgcc gcaggaagtc tgtgacgctt tcatggcgca ccggatcaag gcggtgctgc
      961 attattcccg gcgcagcgcg cgcgcgttcc tggacgcggc gcgaaccggc ggcgtcgaga
     1021 tttcggccct ggcgctgccg caatgctgca tttccgcaag cgtcgccgcg atcctccatg
     1081 acgccggcgc cacccaggtc atgacggccg catcgccgga cgaaaaggcc ttgctggagg
     1141 cgctcgcccg agccttacgt gtctgatcac gttcgcattt tgccgtttgg acaaacttcc
     1201 ccggacatgc tttgtggata atccggcgcc ggcatatccg gatcgtgctc caagcaggcc
     1261 accgattctg ctaggttcgc atccaattgc ccagcaactg tcaaaggaac tgctgtaatg
     1321 gtcgatgaca ggcccgaaga cattggaccg ctgacggatc cggaccggcc caagcgcgcg
     1381 ccaccgacca tcgatctgca ggcgacccaa gtgtccagtg agccgtccag cgagccgcca
     1441 aaggcgggcg aacagccgca gggcgagggc gaaccggaag cgcagcccga gggggcctgg
     1501 gcggcgtcca gttccgaacc atcgccgcag ccggctgcgc cggagcccct gtcgaagccg
     1561 atttcgccct gggccatcgc gccaatctcc ggggcggtgg ccgcggcctt ggtgatcggg
     1621 gtcggttggt tgctgggctg gcccgcggtc cagacgccgt cgccagccgc gccgcaggtc
     1681 agtgcggcgg cggtcgacga actcaccaca cgtgtcgcca gcctcgagac gaaggcgaac
     1741 agggctgcgc cggccaccga tggtgggaca acggcgcgga tcgatgcgct ggagaaatcc
     1801 atcgcggcac tgcgcggcga ggtcgcggcc tcgcgcgcgc aatccgaaaa actggctgct
     1861 gcgatcaatg aggtgaaagc gctgccgcgc gatagcagtg cgccggcgcc ggatctttcc
     1921 ggaatcaatg agcgcatcgc caggatcgac agcgcggtgc gggcgcaggc tgccgcgctt
     1981 gcgcagcaag gcagccagct tgcggctgca agggctgccg acgcaaagcc tgtggacgat
     2041 ctgccgctgc ggcgcgtggt ggcggcttcc ctgctcgacg tcgcggtccg gcacggcgat
     2101 ccctttgccg cccggctcgc ggcggcaaaa gcggttgcgg aagacgccga cgcgctgaag
     2161 ccgctcgagc cctttgcggc gtcgggtatc ccgagcgcgg cggcgctgtg ccgcgagctg
     2221 cttgagatcg tgccgaagct gatgccggcg gcgcccaatg ccgccagcgc cggctcgggc
     2281 atcatcgatc gcctgcaggc gggcgcggcc aagctcgtgc gcatccagcg caccgatgcc
     2341 gggggcaccg atcgcgctag tgtggtcgcg cgcattaccg ccgccgccct gcgcaacgat
     2401 ctcaacacag cgcgcaacga attgaagact ctcgagccgg ccgatcgcgc gcccgcgcac
     2461 gcctggatcg acaaggtcga cgctcgcgac gccgccctgg cggcctcgcg aaaattcgcc
     2521 gacggcgcca tggccgcgct cgccaccgcc aatcaatagg gtcttcatgc ttcggatcat
     2581 tgtgttcttg ctgttgatcg cgctcgcggc tgcgggcgcg gcctgggtcg cggatcaaac
     2641 cggcgacgtc gtgctgtcct ggggcggctg gcgcgtcgag accgcgctgc cggtgttcgc
     2701 gctcgggctc ggcctcgtcg cggtcgccgc cgtcatcgtc tggacgatct tgcgcgcgct
     2761 gtggcgcatg ccggcgcata tccgccgcag ccggcgcgag cggcgccagg cccgcggccg
     2821 tcacgccgtc acgcaaggcc tgctcgcgat cggtcatggc gattcggcct ccgcccgcgc
     2881 gcatgcggaa actgcgcggc gccatgccgc gcatgatccg ctggcgctgc tgctgcacgc
     2941 gcagtccgcc caactcgatg gcgaccgcga aggcgcgcag cgcgccttcc g
//
LOCUS       DASQVK010000167         4043 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_105956,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000167 DASQVK010000000
VERSION     DASQVK010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4043
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105956"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            162..1358
                     /locus_tag="VE567_03510"
     CDS             162..1358
                     /locus_tag="VE567_03510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47943.1"
                     /translation="MDSVHHLRREDLDDQIDDGLPPVIGGRERRMHVRAYEYWVSLLR
                     NGAIPSIQDLDPASIADFSPNSALLDFSRSIEDPTVAFLGRALREECGMLHGIRTVAD
                     VPRGSLLSRLTDHYLQILANKAPVGFEAEFINHKGLPTMYRGILMPFSSNGEAIDYVY
                     GVISWKHAASAALSSELERQIAGALAADPLPFAADEADAAGPAADAGLADWLAAARIS
                     AEEARRCDGRAHTALYAAIGRAYDFALAAEERPDDYAELLEREGLTVQARAPMTPIVK
                     LVFGLGYDKTRLTEYATALSFARNEGLARGELAAFLEHFEGGLKALVRAERERRAPTD
                     KLDRTEQARTSLRAAAPQLVVEMETGDDEFVVLLARRVDAGHLAILAPLADPALVDQA
                     VRKATG"
     gene            1458..>4043
                     /locus_tag="VE567_03515"
     CDS             1458..>4043
                     /locus_tag="VE567_03515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004352 - glutamate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0019551 - glutamate catabolic process to
                     2-oxoglutarate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-glutamate dehydrogenase domain-containing
                     protein"
                     /protein_id="HYZ47944.1"
                     /translation="MATATSDRQDTPDQQLIIDLAQALVKRALPGELDAFDEAARTEA
                     ATFLAEAAAQRTPGTPSIRLESVAHGRRYMRLAIVNDDMPFLVDSVAGTVTAHELSID
                     RVLHPVVSVRRDTDGKLIGLLSDDTGARRESMIYMEVERADAKVRRSLCDEIEAMLAD
                     VRAAVEDWPLLQRAMRADADHMPDTEGAALLRWFLDTHFTQLGHEIRDRDNRKRDALG
                     LSRAGGQEYLAAASLQRAFEWFEEGGDAPLLVKSNVISTVHRRAPLDLAILPVRESGR
                     IVALSIHAGLWTSSALSTPPNKIPILRARLAALQEKYGFDPAGHAGKALTHALAALPH
                     DLLIAFAPADLENLALTFMSLADRPRPKLVTVTGALKRHVFAFVWLPRDELTTARRVT
                     IGRMLAESAQAKILNWAVALETGELALIRYTLDIREGRAPDTDALDKRIGEMVRGWAP
                     GIEATLVDHVDPGRATRLRLKYANHFPAYYRGRYTPAEAALDVLRLAEIEDAQSRSVR
                     LHRLDPTNPRQLRLKIFNVGGIVPLSSAVPALENFGFRVVEEVPATLDEGLGSIHDFL
                     LELEEGQRAEDVMARAGVIEPAIAAVLSGAAENDGFNRLVVSNALRPEEAVLFRAWFR
                     YLRQTGLSYGLLTVVEALRRAPAVTRGIIDLFNARHNPAHCFEGAAEAALAGIEIGLS
                     GVQAADDDRILRTIRSVVAATLRTNAFSPAANEALAFKFDSVKVPGLPAPVPWREIWV
                     YSPRVEGIHLRAGPVARGGLRWSDRRDDFRTEILGLMKAQRVKNAVIVPTGAKGGFFP
                     KQLPAPQNRDAWLAEGTEAYRIFIRALLSVTDNIVGGRVVHPEQVIARDGDDPYFVVA
                     ADKGTA"
BASE COUNT          624 a         1412 c         1338 g          669 t
ORIGIN      
        1 cggcatatgc atggccttgc cgggcccggc cccctggccc cactggtgcg tgcgggcacc
       61 gccgggctcg cgcgcacgct ccgttgggct ttcgcctgat ccttttacgg ggcgttaacc
      121 ctgtagggcg caaaaaaggc cccgaactgc ggggcgacct tatggacagc gtacatcatc
      181 tccgtcgcga ggaccttgac gatcagatcg atgacgggct gccgccggtc attggcgggc
      241 gcgaacgccg catgcacgtg cgcgcttacg aatattgggt gtcgctgctg cgaaacgggg
      301 cgatcccctc gatccaggat ctggatcccg ccagcatcgc cgatttcagc ccgaacagtg
      361 cgctgctgga cttcagccgc tcgatcgagg acccgaccgt cgcatttctg ggccgggcgt
      421 tgcgcgagga atgcggcatg ctccatggca tccgcaccgt cgccgacgtg ccgcgcggat
      481 cgctgctttc gcgcctgacc gaccattatc tccagatcct cgccaacaag gcgccggtcg
      541 gtttcgaagc ggaattcatc aaccataagg ggctgccgac gatgtatcgc ggcatcctca
      601 tgcccttttc atcgaacggc gaagcgatcg actatgtcta tggcgtgatc agctggaagc
      661 acgccgcttc cgccgcgctg tcgagcgagt tggaacgtca aatcgccggc gcgctggccg
      721 ccgatccgct cccgtttgcc gcggacgaag ccgacgcggc aggtcccgcg gccgacgccg
      781 gtcttgcgga ctggctcgcc gcggcgcgca tcagcgccga ggaagcgcgc cgctgcgatg
      841 gccgcgccca taccgccctc tatgcggcga tcggccgcgc ctatgatttc gcgctcgcgg
      901 cagaggagcg gcccgacgat tatgccgagc tgctcgagcg cgagggcctc accgttcagg
      961 cgcgcgcgcc gatgacgccg atcgtaaagc tcgtcttcgg cctcggctac gacaagacgc
     1021 gcctcaccga atatgcgacc gcgctgagct ttgcccgcaa tgagggcctc gcgcgcggcg
     1081 aattggcggc ctttctcgaa cattttgaag gcgggctgaa agctctggtc cgtgccgagc
     1141 gcgagcgtcg cgcgccgacc gacaagctcg accggaccga gcaggcccgc acgagcctgc
     1201 gcgccgctgc cccccagctg gtcgtggaga tggagactgg cgacgacgag ttcgtcgtgc
     1261 tcctcgcccg ccgcgtcgat gcgggccacc tcgccattct cgctcccctc gccgatcccg
     1321 cgctggtcga ccaggctgtc cgcaaggcaa ctggctgagc cctgtccccc ctgcggggtt
     1381 gagatcgcgc gccaccgggc gcatagcgcg gcggataagg gcccgcgtcc gatgggccgt
     1441 tccgcaggcg gagtaacatg gcgacagcca caagcgatcg gcaagacacg ccggatcaac
     1501 agcttatcat cgatcttgcc caggccctgg tgaagcgcgc cctgcccggc gagctcgatg
     1561 cgttcgacga ggcggcgcgg accgaggccg ctactttcct cgccgaggcc gcagcgcagc
     1621 gcacgccggg cactccctcg atccggctgg aatcggtagc gcatggccgc cgctatatgc
     1681 gcctcgccat cgtgaacgac gacatgccgt ttctcgtcga ttcggtcgcc ggcactgtca
     1741 ccgcgcacga gctgtcgatc gatcgcgtgc ttcatccggt ggtcagcgtg cgccgcgaca
     1801 ccgatggcaa gctcatcggc ctgctgagcg acgacacggg cgcgcggcgc gaatcgatga
     1861 tctacatgga agtcgagcgc gccgacgcga aagtgcgccg ctcgctgtgc gacgagattg
     1921 aggcgatgct cgccgatgtc cgcgccgcgg tcgaggattg gccgctactg caacgggcga
     1981 tgagggctga cgccgatcac atgcccgaca ccgagggtgc ggcgctcctg cgctggttcc
     2041 tggacaccca cttcactcag cttggccacg aaatccgcga ccgcgacaat cggaagcgcg
     2101 acgcgctcgg cctttcgcgg gccggcggtc aggaatatct cgctgccgcg tcgctgcagc
     2161 gcgcgttcga atggttcgag gaaggcggcg acgcgccgct gctcgtcaag tcgaacgtga
     2221 tctcgaccgt gcatcgccgc gccccgctcg atctcgccat cctgccggtg cgcgagagtg
     2281 gcaggatcgt ggcgttgtcg atccatgccg gcctgtggac ctccagcgcg ctctcgacgc
     2341 cgcccaacaa gatcccgatc ctgcgtgccc gtctggcggc gctgcaggag aaatatggtt
     2401 tcgatcccgc gggccatgcc ggcaaggcgc tgacgcacgc gctcgccgcc ttgccgcacg
     2461 acctgctgat cgcgtttgcg cccgcggatc tcgaaaatct cgcgctgact ttcatgtcgc
     2521 ttgccgaccg gccgcggccg aagctggtca ctgtcaccgg ggcattgaag cggcacgtgt
     2581 tcgcgttcgt ctggctgccc cgcgacgagc tcacgaccgc ccggcgcgtg acgatcgggc
     2641 ggatgctcgc cgagtccgct caggcgaaga tcctcaactg ggcagtcgcg ctggagaccg
     2701 gcgagctcgc gctcattcgc tatacgctcg acattcgcga agggcgcgcg cccgacactg
     2761 acgcgctcga caagcgcatc ggcgagatgg tgcgaggctg ggcgccgggc atcgaggcga
     2821 cgctcgtcga ccatgtcgat ccgggccgcg ccacgcggct gcggctcaaa tacgcgaatc
     2881 atttcccggc ctattatcgc ggccgctaca ccccggccga ggccgcgctc gacgtgcttc
     2941 gtctcgccga gatcgaggac gcgcagtccc ggagcgtccg cctccaccgg ctcgatccga
     3001 ccaatccgcg ccagctccgc ctcaagatct tcaatgtggg cggcatcgtg ccgctttcgt
     3061 ctgcggtccc ggcactggag aatttcggct ttagggttgt cgaggaagtg cccgccacgc
     3121 tcgacgaggg gctcggcagc atccacgatt tccttttgga gctcgaggaa gggcagcgcg
     3181 ccgaggatgt gatggcgcgc gccggcgtga tcgagccggc catcgccgcc gtgctgtcgg
     3241 gcgccgccga gaatgacggc ttcaaccggc tggtcgtcag caatgcgctg cggcccgaag
     3301 aggcggtgct gttccgcgcc tggttccggt atctgcgcca gaccggcctg tcctacgggc
     3361 tgctgacggt ggtggaggcg ctgcgccgcg cgcctgcggt gacgcgcggg atcatcgacc
     3421 tgttcaatgc ccggcacaat ccggcgcatt gcttcgaagg cgcggccgaa gcggcgctgg
     3481 ccggcatcga aatcggcctg tcgggggtcc aggcggccga cgacgaccgc atcttgcgga
     3541 cgatccgcag cgtggtcgcg gcgacgctgc gcaccaacgc cttctcgccc gccgccaacg
     3601 aagcgctcgc cttcaaattc gacagcgtca aggtgcccgg cctcccggcc ccagtgccgt
     3661 ggcgcgaaat ctgggtttat tccccgcgcg tggagggcat tcacttgcgc gccggccccg
     3721 tggcgcgcgg cggcctgcgc tggtcggacc ggcgcgacga tttccgcacc gagatcctgg
     3781 ggctgatgaa ggcgcagcgc gtgaagaacg cggtgatcgt gcccaccggc gccaagggcg
     3841 gcttcttccc gaagcaattg cccgccccgc aaaaccgcga cgcgtggctc gccgagggca
     3901 ccgaggccta tcgcatcttc atccgcgcgc tgctctcggt caccgacaac atcgtcggcg
     3961 gccgggtggt tcatcccgaa caggtgatcg cgcgcgacgg cgacgatccc tatttcgtcg
     4021 tcgccgcaga caaaggcacc gcg
//
LOCUS       DASQVK010000168         2309 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_422773,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000168 DASQVK010000000
VERSION     DASQVK010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2309
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422773"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..798
                     /locus_tag="VE567_03520"
     CDS             <1..798
                     /locus_tag="VE567_03520"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007164307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HYZ47945.1"
                     /translation="VLLKLGGYGFIRFSLPMFPEASSTLIWVILALSGIAVVYTSLVA
                     LVQQDMKKLIAYSSVAHMAIVTIGLFAFNRQGLEGSMMVMLSHGLVSGALFLCVGVIY
                     DRLHTREIARYGGLSNNMPRYALLFMLFTMASVGLPGTSGFVGEFLSLLGAWKVSSFA
                     TAICTTGIILGAAYMLYLYWRVAFGVSDKPDAAAMPDLNARELVSLGAIAAVVLWMGV
                     YPESFLGPMRNDIGALVARVDRARPSFDPQLAGGKPQVKLPVEAAAH"
     gene            798..2243
                     /gene="nuoN"
                     /locus_tag="VE567_03525"
     CDS             798..2243
                     /gene="nuoN"
                     /locus_tag="VE567_03525"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010545138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoN"
                     /protein_id="HYZ47946.1"
                     /translation="MDYAQNLLVSLPEVILGAGAIALMMVAAYAGDRATRVISWISVL
                     LLVGALVASLYPAGSAFGGLYKADAFSAFAKALVYGGAAVAVILAPDFFERNRGELRA
                     EYPVLILLSSVGMGMMVSASDLLTLYVGLELQSLAAYVLASFMRRDNRSAEAGLKYFV
                     LGALASGILLYGIALLYGFTGTTQFDGIARTFASGPPSTGLIFGLVFALAGIAFKISA
                     VPFHMWTPDVYEGAPTPVTAFFASAPKVAAMGLMVRLTVEAMGPAYESWRQIVIFSAL
                     ASIVLGAVAAIGQTNVKRLLAYSSINNVGFALIGLAAVQPGQPDGVAAVMTYMAIYIV
                     MTLGSFLVVLQMRDAEGNNVETIASLSGLSRTSPYLAAALAIFMFSLAGVPPLLGFWS
                     KFVVFDAAVKAGLWPLAAIGIAASVIGAYYYLRIVKTMYFDDPKAAYHPMENKVEGGL
                     IALSALAMSPIGYFLIPALGVVSANAARALF"
BASE COUNT          320 a          741 c          747 g          501 t
ORIGIN      
        1 gtgctgctga agcttggcgg ctatggcttc attcgctttt cgctgccgat gttcccggaa
       61 gcctcctcga ccttgatctg ggtgatcctg gcgctgtcgg gcattgccgt cgtctatacc
      121 tcgctcgtcg cgctggtgca gcaggacatg aagaagctga ttgcctattc ctcggtcgcg
      181 cacatggcga tcgtgacgat cggcctgttc gctttcaacc ggcaggggct tgagggctcg
      241 atgatggtca tgctctcgca cggcctcgtc tctggcgcct tgttcctgtg cgtgggcgtg
      301 atctacgacc ggctgcatac ccgcgagatc gcgcgctatg gcgggctgtc gaacaacatg
      361 ccccgctatg ccttgctgtt catgctcttc accatggcct cggtcggcct gccggggaca
      421 agcggctttg tcggcgagtt cctgtcgctg ctgggcgcct ggaaagtgag cagcttcgcg
      481 accgcgatct gcacgacggg catcatcctg ggcgcggcct atatgcttta cctctattgg
      541 agggtcgcgt tcggggtgtc cgacaagccc gacgcggccg cgatgccaga tctcaacgcg
      601 cgcgaactgg tgagcctggg cgcaatcgca gcggtggtgc tgtggatggg cgtctatccc
      661 gaaagcttcc ttgggccgat gcgcaacgat atcggcgcgt tggtcgcccg cgtggaccgc
      721 gccaggccga gcttcgatcc gcagctcgcg ggcggcaaac cccaggtcaa actgccggtc
      781 gaggcggcgg cgcactgatg gattacgctc aaaaccttct cgtatcgctg cccgaagtga
      841 tcctcggcgc aggcgcgatc gcactgatga tggtcgccgc ctatgccggc gaccgcgcga
      901 cgcgcgtgat cagctggatt tccgtgctgc tgcttgtggg cgccctggtc gcctcgctct
      961 atccggcggg cagcgcgttc ggcggactct ataaggccga cgccttttcc gcgttcgcca
     1021 aggcgttggt ttatggcggc gcggcggtgg cagtgatcct cgcgcccgat ttcttcgagc
     1081 gtaaccgggg cgaactgcgc gccgaatatc cggtgctgat cctcttgtcc tccgtcggca
     1141 tgggaatgat ggtctcggcc tcagacctgc tgacgctcta tgtcgggctc gaactgcaga
     1201 gcctcgccgc atatgtgctg gcgagcttca tgcgccgcga caatcgctcg gccgaggccg
     1261 gcctcaaata tttcgtcctg ggcgcgctgg cctccggcat cctgctctat gggattgcgc
     1321 ttctttacgg cttcaccggc acgacgcagt tcgacgggat tgcgcggacc ttcgcgagcg
     1381 gaccgccctc gaccggcctg atcttcggcc tggtgttcgc gctggctggc atcgcgttca
     1441 agatctcggc cgtgcccttc catatgtgga cgccggacgt ctacgaaggc gcgccgacgc
     1501 ccgtcaccgc tttcttcgcc tccgcgccca aggtggccgc aatgggcctg atggtgcgcc
     1561 tcacggtcga ggcgatgggc ccggcctatg agagctggcg gcagatcgtg attttctcgg
     1621 cgctcgcctc gatcgtgctc ggcgcggtgg cggcgatcgg ccagaccaac gtcaagcggc
     1681 tgctcgctta ctcgtcgatc aacaatgtcg gtttcgcgct gatcggcctt gccgccgtgc
     1741 agccgggcca gcctgacggc gtcgccgcgg tgatgaccta tatggcgatc tatatcgtca
     1801 tgaccttggg ctcgttcctc gtcgtgctgc agatgcgcga cgcggaaggc aacaatgtcg
     1861 agacgatcgc cagcctgtcc ggcctgtcgc ggaccagccc gtatctcgcc gccgctctcg
     1921 ccatattcat gttctcgctg gcgggcgtcc cgccactgct cggcttctgg tccaagtttg
     1981 tggtgttcga cgctgcggtg aaggcggggc tttggccgct tgccgcgatc ggcatcgctg
     2041 cttccgtgat cggcgcctat tattatctgc ggatcgtgaa gacgatgtat ttcgacgacc
     2101 ccaaggccgc ctatcacccg atggaaaaca aggtcgaagg cgggctgatc gcgctttcgg
     2161 cgctcgccat gtcgccgatc ggctatttcc tgatcccggc gcttggcgtg gtcagcgcga
     2221 atgccgcgcg ggcgctgttc tgatcgagat ccgcacggtc gcgcagaccg cgtccaccaa
     2281 tgccgacatg ctggcgcttg ctggcgggg
//
LOCUS       DASQVK010000169         2671 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_422805,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000169 DASQVK010000000
VERSION     DASQVK010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2671
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422805"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..612
                     /locus_tag="VE567_03530"
     CDS             <1..612
                     /locus_tag="VE567_03530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017499830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HYZ47947.1"
                     /translation="KAGSGTFRMNVALSELPRFTCLPEPGEHLASGIVIAPTLDYMDQ
                     AFTDARAFGWSKRPIVEMLIPSTLDDSLAPPGAHVASLFCQQFAPELPDGRSWAEERE
                     AAADTIIDTVEAFAPGFKASVVGRLSLSPMDLEERFGLAGGDIMHGAMSLDQLYSARP
                     VLGNGAYAGPIKGLWMCGAGTHPGGGVTGAPGHNCAREILRSR"
     gene            complement(634..1374)
                     /locus_tag="VE567_03535"
     CDS             complement(634..1374)
                     /locus_tag="VE567_03535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003040563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HYZ47948.1"
                     /translation="MIRVGIGGWTYEPWRGVFYPPKLPHAKEIEHATKALTAIEVNGT
                     YYRRQDPKTFENWAKAAPEGFVYTLKASRFCTNRRDLSEGAEGIRNFFDQGLTELGDK
                     LGPILWQLMGTKQYNADEIAGFLELLPKSWNGVPLRHAIEPRHESFCDPVFFEQARKA
                     GVAVVYAHAEDYPTFEEQTAGFTYARLQQCREEIDTGYTAQELDRWADQAKRWAEGGR
                     DVLVFFIAGAKVRAPAAAMALIERVGRP"
     gene            complement(1385..1606)
                     /locus_tag="VE567_03540"
     CDS             complement(1385..1606)
                     /locus_tag="VE567_03540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47949.1"
                     /translation="MLAKVKSLFTIKTRFEAFLVIYALALGACERGLHYLDQYPGFGG
                     KLLFLACTGSVFMAGGMILDHLAIRRGLR"
     gene            complement(1663..>2671)
                     /locus_tag="VE567_03545"
     CDS             complement(1663..>2671)
                     /locus_tag="VE567_03545"
                     /EC_number="3.5.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009015 - N-succinylarginine dihydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006525 - arginine metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="N-succinylarginine dihydrolase"
                     /protein_id="HYZ47950.1"
                     /translation="SAPPLPAWAMSASAMWTANAATVSPAPDTSDGKCHLTVANLVTM
                     PHRSHEWPNTLKQLRLAFSGPGFVVHDPIPAPFGDEGAANHMRLAPAHDRPGVEIFVY
                     GRSGGAFPARQHRVASEAVAARHGLDLARTLFVEQAEQAIAAGAFHNDVVAVADGLTL
                     FAHEHAFADRASVYAELERLLPEVRIVEVPAARVSLQDAIASYLFNAQLVTLPSGEQA
                     LILPSEAQAVPAVRGYLDDLVAGNGPIRATHFVDVRQSMANGGGPACLRLRVVADPVE
                     IDPRFLVDEAKLDRLESVVAAHWPESIELARLADPALHQAIAAARVALLETLGLAGED
                     I"
BASE COUNT          455 a          861 c          913 g          442 t
ORIGIN      
        1 aaagcaggtt ccggaacgtt tcggatgaac gtggcgctct ctgagctgcc gcgtttcact
       61 tgcctgcccg agccgggcga gcatctggcg agcggcatcg tgatcgcgcc gacgctcgat
      121 tatatggacc aggccttcac cgacgcgcgt gcgttcggct ggtccaagcg gccgatcgtc
      181 gagatgctga tcccctcgac gctcgacgac agcctggccc cgccgggcgc gcatgtcgcg
      241 agcctcttct gccagcaatt cgcgcccgaa ctgcccgacg ggcggagctg ggccgaggag
      301 cgcgaagcag cggcggacac gatcatcgac acggtcgagg ccttcgcgcc cggtttcaag
      361 gcttcggtcg tcggacggct gagcctcagc ccgatggacc tggaagagcg cttcggcctt
      421 gcgggagggg acatcatgca cggggcgatg tcgctcgatc agctctactc ggcgcggccg
      481 gtgcttggga acggcgccta tgccgggccg atcaagggcc tgtggatgtg cggcgcgggc
      541 acgcacccgg gcggcggcgt caccggcgcg ccgggacata attgcgcgcg ggagattctg
      601 cgcagccgct agggtggcta ctgggtacgc accctagggc cggccgaccc gttcgatcag
      661 cgccattgcg gcagcgggcg cgcggacctt ggcgccggcg atgaagaaga cgagcacgtc
      721 gcggccgcct tcggcccagc gctttgcctg gtcggcccag cggtccagct cttgcgccgt
      781 atagccggtg tcgatttctt cgcggcattg ctggagccgg gcataggtga agccggcggt
      841 ctgttcctcg aaggtcggat agtcttcggc atgggcatag accaccgcca cgccggcctt
      901 gcgcgcctgc tcgaaaaaca ccggatcgca gaagctttcg tgccgcggct cgatcgcgtg
      961 gcgcagcggc acgccgttcc agctcttggg cagcagctcg agaaagccgg cgatctcgtc
     1021 ggcattatat tgcttggttc ccatcagctg ccagaggatg gggccgagtt tgtctcccag
     1081 ctcggtcagg ccctgatcga agaaattgcg aatgccttcc gcgccttccg aaaggtcccg
     1141 gcgattggtg cagaagcggc tggccttgag cgtatagacg aagccctcgg gcgctgcctt
     1201 ggcccagttt tcgaacgtct tcggatcctg ccggcgataa taggtgccgt tgacctcgat
     1261 cgcggtcagc gccttcgtcg catgctcgat ctctttggcg tgcggcagct tgggcggata
     1321 gaagacgccg cgccagggtt catacgtcca cccgccaatg ccgaccctga tcatcggccg
     1381 gcgcttagcg caggccgcgc cggatcgcca gatggtcgag aatcatgccg ccagccatga
     1441 acacgctgcc ggtgcaggcg aggaacagca atttgccgcc aaagcccgga tattgatcga
     1501 gataatgaag cccgcgctcg catgcgccga gcgcaagcgc atagattacg aggaacgcct
     1561 cgaagcgcgt ctttatggtg aacaggcttt taaccttcgc gagcatggcg gcaattgcgc
     1621 agcgtcgcgc ccgtcgaaca aggtaaataa ttggttaacg cgtcagatat cctcacccgc
     1681 cagccctagc gtttccagca gcgctacacg agcggcggcg atggcctggt gcagcgcggg
     1741 gtcggcgagg cgggcgagct cgatcgactc cggccagtgc gcggcaacca cggattcgag
     1801 ccgatcgagc ttggcctcgt cgaccaggaa acgcggatcg atctcgaccg gatcggcaac
     1861 cacgcgcagg cgcagacagg cggggccgcc gccattggcc atcgactgac ggacatcgac
     1921 gaaatgggtc gcgcggatcg ggccgttgcc ggcgacgaga tcgtccagat agccgcgcac
     1981 cgcgggcacg gcctgcgctt cggagggcag gatcagcgcc tgctcgcccg acgggagcgt
     2041 caccagctgc gcgttgaaca gatagctggc gatcgcgtcc tggaggctca cgcgcgcagc
     2101 ggggacctca acgatccgca cctcgggcaa aagccgctcc agctcggcat agacactcgc
     2161 ccgatcggca aaggcgtgct cgtgcgcgaa cagggtcagc ccgtcggcta cggccactac
     2221 gtcgttatgg aacgcgcccg cggcgatcgc ctgctcggcc tgctcgacga acagcgtgcg
     2281 cgcaaggtcg agcccgtggc gcgccgccac cgcttcgctg gcgacgcggt gctgacgcgc
     2341 cgggaaagcc ccgcccgagc ggccatagac gaagatttcc acgccgggtc ggtcgtgcgc
     2401 gggtgcgagg cgcatatggt tggccgcacc ttcgtcgccg aagggggcgg ggatcggatc
     2461 atgcacgacg aagccgggcc ccgaaaacgc caatcgcaat tgcttcagcg tgttcggcca
     2521 ttcatggctg cgatgcggca tggtcacaag gttcgcgacc gttagatggc atttgccgtc
     2581 gcttgtgtcg ggcgcgggcg agaccgtggc ggcgttggca gtccacatgg ccgaggcgct
     2641 catcgcccag gcgggcaaag gcggagcact c
//
LOCUS       DASQVK010000170         5423 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_200479,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000170 DASQVK010000000
VERSION     DASQVK010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5423)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5423)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5423
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200479"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(76..825)
                     /locus_tag="VE567_03550"
     CDS             complement(76..825)
                     /locus_tag="VE567_03550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HYZ47951.1"
                     /translation="MTYCLGMLLESGLILMADTRTNAGIDDFSTFRKLHLLSTERDRQ
                     IYGATAGSLSISQTVVSLLQEDQLAAETGEHSRCLSETPTMFRAVQLVGEAVQRAGAT
                     IGEALERAHIDHSVELLVGGRIADGPLKLFLVYSVGNFIECTPDVPFLQIGETKYGRP
                     ILDRTLRYDTPLPDAVKIGFLSFSSTMKSNLGVAQPIDLLVVPADREQPIISRRVERG
                     DRYFAEIAERWGELLNQATRSIPNPPWMTQT"
     gene            944..1081
                     /locus_tag="VE567_03555"
     CDS             944..1081
                     /locus_tag="VE567_03555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47952.1"
                     /translation="MDRSKDNDRDRKHSSGRQQSQQNQSGNRQQGDRSHQQGGSNRNQ
                     Q"
     gene            complement(1138..1812)
                     /locus_tag="VE567_03560"
     CDS             complement(1138..1812)
                     /locus_tag="VE567_03560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010214543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HYZ47953.1"
                     /translation="MRGLLFKTVFYPGSVAFVLLAPLLALGGRRMLIPHVYRWVRFHD
                     WCARVLLDVRCRVEGTLPRGPVLVAMKHEAMYETLQSLLLLDRPAPVLKQELMDIPIW
                     GRATQRYGGIVVDREAGAKALRAMLAEARELIAEGRPILIFPEGTRVPHGERPPLRSG
                     LAGLYRLLNLPVVPIACDSGRLLPKGGPKQPGTITFKIGETIPPGLPRAEVEARVHAA
                     INALNR"
     gene            complement(1812..2342)
                     /locus_tag="VE567_03565"
     CDS             complement(1812..2342)
                     /locus_tag="VE567_03565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HYZ47954.1"
                     /translation="MIRRLVSALLLVWLIGFVLFVSLLPRPAGDRKTDGVIVLTGGPN
                     RIERGLTVLDRGEARRMLVSGVDTTVRRSDFLTLYHASPRLFDCCIDLGQEAVDTRSN
                     GEESAAWVRKHGYRSVRLVTTDWHMPRARFELSQALPKAIQIVPDAVRSEPDLRALLN
                     EYHKYLLRRTAALFGI"
     gene            complement(2339..3220)
                     /locus_tag="VE567_03570"
     CDS             complement(2339..3220)
                     /locus_tag="VE567_03570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HYZ47955.1"
                     /translation="MIFAFAFTPAERRLLPEGRAAGPMPWVIAIMIFLTVLAAAAGLA
                     LSSAAQGLGDQLAGRVTIQVVEADRLDRDAQAAAAARAARALPGVARVAPVSEAEMSR
                     LLAPWLGEAGLELPAPALIDVDLADPAALDRLKAAVARVAPAARIDAHARWLAPLRDL
                     IGTLRWLAAVLVLLMGIATAACVVLAARAALNTHRETIDVLHLLGATDVQIARLFQRR
                     IALDALFGGGLGFAAGALVLALLAARIGALGSELVGSVRLDPASWLALLAVPLAGALL
                     ATAAARLTVERALRRIL"
     gene            complement(3217..3921)
                     /gene="ftsE"
                     /locus_tag="VE567_03575"
     CDS             complement(3217..3921)
                     /gene="ftsE"
                     /locus_tag="VE567_03575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HYZ47956.1"
                     /translation="MASIVQFENVGLRYGMGAETLSDISFSLAPGAFYFLTGASGAGK
                     TSLLRLLYLAQRPSRGLIRLFDEDVVDMPRERLPALRRRIGVVFQDFRLVPHLSAYDN
                     VALPLRVDGVDEAEIDARVSEMMAWVGLSGRATARPATLSGGEQQRVAIARAVVGKPD
                     MLVADEPTGNVDPDMAARLLHLFDALNRLGTTVVVATHDLHLVARVPTAKIMRLERGH
                     LDDPTGALRYPPRVPA"
     gene            4051..4749
                     /locus_tag="VE567_03580"
     CDS             4051..4749
                     /locus_tag="VE567_03580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MJ0042-type zinc finger domain-containing
                     protein"
                     /protein_id="HYZ47957.1"
                     /translation="MIIECPACRTRYTVPDDAIGINGRAVRCARCGHSWHQWPPGLEP
                     PVPPTPPEREEAPQPEVSAPPPEPEAIAPPEPEPDRYDEPGAPPPRRNPARRWTIAAV
                     IIGLLLLAGAAAIQLVGLDKLRARLGLGAPGASVSLLLEVPRKPERRTLASGNELFAL
                     TGRVVNPTRERQNVPDIQAELQDAQGRVVYSWTITPPTRTLAPGSAAEFDAAEVDVPK
                     GARELKLSFAGSRL"
     gene            5069..5155
                     /locus_tag="VE567_03585"
     tRNA            5069..5155
                     /locus_tag="VE567_03585"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5103..5105,aa:Leu,seq:gag)
BASE COUNT          934 a         1892 c         1833 g          764 t
ORIGIN      
        1 cacccgcgcc gtccgccgct cgatcgtcga gcagggccag gacgacgccc gccccgattt
       61 cggccgcgcg cacgactagg tctgtgtcat ccagggcggg ttggggatgc tgcgcgtcgc
      121 ctggttgagc aactcgcccc agcgctcggc tatctccgcg aaatagcggt cgccgcgttc
      181 cacacggcgg ctgatgatcg gctgctcccg atcggccggg accaccagca gatcgatcgg
      241 ctgggccacg cccagattgg acttcatcgt gctgctgaac gacaggaagc cgatcttcac
      301 cgcgtcgggc agcggcgtgt cgtatcgcaa ggtgcgatcg aggatcggcc ggccatattt
      361 ggtctcgccg atctggagaa acggcacgtc cggcgtgcat tcgatgaagt tgccgacgct
      421 atagactagg aacagcttga gcgggccgtc ggcaatgcgg ccgccgacca gcagctcgac
      481 actgtggtcg atgtgcgcgc gctccagcgc ttccccgatg gtcgcccccg cccgctggac
      541 agcttcgccg accaattgca ccgcgcggaa catcgtgggc gtttcgctga ggcagcggct
      601 gtgctcgccc gtttccgcgg cgagctggtc ttcctggagc aggctcacga cggtctggct
      661 gatcgacagg ctgcccgccg tcgcaccgta gatctggcga tcccgttcgg tggagagcag
      721 gtggagctta cggaaggtgg agaaatcgtc gattcccgcg ttggtgcgcg tgtcggccat
      781 caggatcagg ccggactcga gcagcatccc caggcaatag gtcatctccc ttactcctcg
      841 gctgaccgct ggcaggcggc aagtcgcccc atacggcgaa accgccgcat tcggccggcg
      901 ttccttggct gcctgcaacc aaggcgcgtg aaaggaatga gacatggacc gcagcaagga
      961 caatgaccgc gaccgcaagc atagtagtgg tcgtcagcag tcgcagcaga accagagcgg
     1021 caatcgccag caaggcgacc gcagccatca gcagggcgga tcgaaccgca accagcaata
     1081 ggcccatgag ccatcgcgag gccgccccat ccggggcggc cttttcgcta cccgacgtca
     1141 gcggttgagt gcgttgatcg cggcgtggac ccgcgcttcc acttccgcgc gcggcaggcc
     1201 gggggggatc gtctcgccga ttttgaaggt gatcgtgccc ggctgcttgg gcccgccttt
     1261 gggcagtagc cgcccgctgt cgcaggcgat cggcaccacc ggcagattca gtaggcggta
     1321 gagccccgcc aaccccgagc ggagcggcgg ccgctcgccg tgcggaaccc tggtgccctc
     1381 ggggaagatc aggatcggcc gcccttccgc gatcagctcc cgcgcctctg cgagcatcgc
     1441 gcgcagcgcc ttggcgcccg cctcgcggtc gacgacgatg ccgccatagc gttgcgtcgc
     1501 acggccccag atcgggatat ccatcagctc ctgcttcagc accggggccg gccggtccaa
     1561 cagcaggagc gactgcagcg tctcgtacat ggcctcgtgc ttcatcgcga ccagcaccgg
     1621 tccccgaggg agcgtcccct cgacccggca gcgcacgtcc agcagcacgc gcgcgcacca
     1681 gtcgtgaaag cgcacccagc gataaacgtg cgggatcagc atgcgccggc cgccgagcgc
     1741 gagcagcggc gccagcagca cgaacgccac gctgcccgga tagaagaccg tcttgaacag
     1801 caggccgcgc atcagatgcc gaacagcgcc gcggtccggc gcagaagata tttatgatac
     1861 tcgttcagca gagcgcgaag gtcgggctcg ctgcgcactg cgtccggcac gatctggatc
     1921 gccttcggga gcgcctggct cagctcgaag cgggcgcggg gcatgtgcca gtcggtcgtc
     1981 accaagcgga cgctgcgata gccatgcttc ctgacccagg cggccgattc ctcgccgttg
     2041 gagcgtgtgt ccaccgcttc ctgccccaga tcgatgcagc aatcgaacag ccgtggcgag
     2101 gcgtggtaca aggtcaggaa atcgctgcgg cgcacggtgg tgtcgacgcc ggaaaccagc
     2161 atccgcctgg cttcgccccg atcgagcacg gtcaggccgc gctcgatccg gttggggccc
     2221 ccggtcagca cgatcacgcc atcggttttc cggtcgccgg ccgggcgcgg cagcaggctg
     2281 acgaacagca cgaagccgat cagccagacg agcaggaggg ccgagacgag acggcggatc
     2341 acaggatgcg cctcaacgct cgctcgacag tgagccgggc ggccgccgtc gccagcagcg
     2401 cgccggcgag aggcaccgca agcagcgcca gccagctcgc cgggtccagc cgcaccgacc
     2461 cgaccagctc cgatcccagc gcgccgatgc gggcggcgag cagcgccagc accagcgcgc
     2521 cggccgcaaa gccgagcccg ccgccgaaca gcgcatcgag cgcgatccgg cgctggaaca
     2581 gccgtgcgat ctgcacatcg gttgcgccca gcaagtggag cacgtcgatc gtctcgcggt
     2641 gggtattgag cgcggcgcgt gcggcgagca ccacgcaggc ggcagtggct atgcccatca
     2701 gcagcaccag caccgcggcc agccaacgca aggtgccgat caggtcgcga agcggcgcga
     2761 gccagcgcgc atgtgcgtcg atccgcgctg ccggcgcgac cctggcgacc gcggccttca
     2821 gccggtccag ggccgccgga tcggccaggt caacgtcgat caaggccggc gcgggcaact
     2881 ccagcccggc ctcgccgagc cagggggcca gcaggcgcga catttcggcc tcgctgaccg
     2941 gtgcgacccg ggcgacgccg gggagcgcgc gggcggcgcg cgcggcggcg gccgcctgtg
     3001 cgtcgcggtc caggcggtcg gcctccacga cctgaatcgt aacgcggccc gcgagctggt
     3061 cgccgagtcc ctgtgccgcc gaactcagcg ccaggcccgc ggcggcggcg agcacggtca
     3121 ggaagatcat gatcgcgatc acccagggca tcgggcccgc ggcgcgccct tcgggcagca
     3181 ggcgccgttc ggcgggcgtg aaggcgaaag cgaaaatcat gcgggcactc gaggcggata
     3241 acgaagcgcg ccggtcgggt catccagatg cccgcgctcc agccgcatga tcttcgccgt
     3301 gggcacccgg gcgaccaggt gcaggtcgtg cgtcgcgacg acgacggtgg tgccgagccg
     3361 gttcagcgcg tcgaacaaat gcagcagccg cgccgccatg tctggatcga cattgcccgt
     3421 cggctcgtcg gcgaccagca tgtccggctt gcccaccacc gcgcgggcaa tggcgacgcg
     3481 ctgctgctca ccgcccgaga gcgtcgccgg ccgcgcggtc gcccggcccg acaggccgac
     3541 ccaggccatc atctcgctca cgcgcgcgtc gatttccgct tcgtccaccc cgtcgacccg
     3601 caagggcaaa gcgacattgt cataggcgga cagatgaggg accagccgga aatcctgaaa
     3661 cacgacgccg atccgacgcc tgagcgccgg cagccgttca cgcggcatgt ccaccacgtc
     3721 ctcgtcgaac aggcgaatga ggccgcggct cggccgctgg gcgagataga gcagccgcag
     3781 cagcgaggtc ttgccggcac cggacgcgcc ggtgaggaaa tagaatgccc ccggcgccag
     3841 gctgaagctg atgtccgaca gggtttccgc gcccatacca tagcgcagac ccacattttc
     3901 gaactgcacg atgctcgcca cccgagcccc tcacgccctc gctgcgcccc aaaggctcgc
     3961 catcgcacgg cgcaagcgcc cgcgtaaagc actgtgcttg cgcgacgagt cgcgtgacgt
     4021 ctagaagtcg tcatgaaggg gctcgcgagc atgatcatcg aatgtccggc gtgccgcacg
     4081 cgctacaccg ttcccgacga tgcgatcggc atcaacgggc gcgcggtgcg ctgcgcccgt
     4141 tgcgggcata gctggcatca atggccgccc ggcctcgagc cgccggtgcc acctacgccg
     4201 cccgagcgtg aggaagcacc gcagccggag gtctccgccc cgccgcccga gcccgaagca
     4261 atcgcgccgc cggagcccga gcccgaccgc tatgacgagc ctggcgcgcc tccgcctcgg
     4321 cgcaatcccg cgcggcgctg gacgattgct gcagtgatca tcgggctgct gctgctcgcc
     4381 ggcgccgccg cgattcagct cgtcgggctg gacaagctcc gtgcgcgact gggactcggc
     4441 gcgccgggcg catcggtgtc gctgctgctc gaagtgccgc gcaagcccga acggcgcacg
     4501 ctcgccagcg gcaacgagct gttcgcgctc accggccggg tcgtgaaccc gacccgagag
     4561 cgccagaacg tgccggacat ccaggccgag ctgcaggacg cgcagggccg ggtcgtctat
     4621 agctggacga tcaccccgcc gacccgcacg ctggcccccg gcagcgcggc cgagttcgac
     4681 gccgccgaag tcgatgtccc aaaaggcgcg cgcgagctta agctgagctt cgccggcagc
     4741 aggctttagg cccctaagtt cacaaacttc ttagggtgag cgacctattt cgtgaactta
     4801 aggccagatt tccgttcaga accagtagct tgcgcaaaac accatgcgac gagctgccgt
     4861 gaatcagcga cctatggtga aaaccgggcc ggtcgaatcg gacgatgaga aggagccggc
     4921 gcgcagcatg acaccggcca aggggtgtag gacagcggtt ttgggcgggc aagccgaggc
     4981 ccgcaatggg ctgttgcggg ggggcaatcg ctctgctagg ggcagcggcc ttgccagcgc
     5041 cggccccgtc cggcgacaag tcccgagtgc ggtcgtggcg gaactggtag acgcgcaacg
     5101 ttgaggtcgt tgtgtccgaa aggacgtgga agttcgagtc ttctcgaccg caccaaatgc
     5161 tgagttaagc gattgaaagt cggccagatt actggcgaca ccgtgtgagc ccgccgcgcc
     5221 cgctcgccga catccgagcc gatttccgaa cagcgccagt cgcggggcca aggcatgatg
     5281 ctggccggca ccgacccgtg cgagccggcg cttgcctttg cctggaatcc agccgcggcc
     5341 gaagcgttcg ccagccgatt ggagtggatc gggccggtca gccctgcgcc atccggtgaa
     5401 cgtcggctgc gaccatcgct tct
//
LOCUS       DASQVK010000171         3096 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_42396, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000171 DASQVK010000000
VERSION     DASQVK010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3096
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42396"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..235
                     /locus_tag="VE567_03590"
     CDS             <1..235
                     /locus_tag="VE567_03590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019514846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HYZ47958.1"
                     /translation="APSGPQPAEGPGYGATMWLFGPKQGLPQGSYAAQGNRGQFIMVI
                     PSKRLVIVRRGEDPAGAPFDIAKFSADVASALK"
     gene            240..1157
                     /locus_tag="VE567_03595"
     CDS             240..1157
                     /locus_tag="VE567_03595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008067381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47959.1"
                     /translation="MGRGRGLRFGAALRGAALTRFSHFAAIDWSGAAGPRQKGIAVAA
                     CAAGRDAPELVRLGHIWSRMEVLDWLLALDGDWLVGLDLSPSLAFADCGAFFPGWDRS
                     PSDVRRLWALVEEIAAGEPHLGANRFVDHPEASRHFRRHGGRCGDLFPPGAGRFRVVE
                     DASREQGLCNPYSNFNLVGAAQVGKSSLTGMRLFHRIDGKLPIWPYDPVPERGPVVVE
                     IYTSIAATAAGLKRGRTKIRDPHTLDGALAQLGSESHRPLARYDDHATDAILAAAWLR
                     AVAHNEGLWRPHRLTPELARTEGWTFGVR"
     gene            1217..1292
                     /locus_tag="VE567_03600"
     tRNA            1217..1292
                     /locus_tag="VE567_03600"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1250..1252,aa:Thr,seq:tgt)
     gene            1419..1946
                     /locus_tag="VE567_03605"
     CDS             1419..1946
                     /locus_tag="VE567_03605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HYZ47960.1"
                     /translation="MTTDRPSGLSALFEAHRAELLRFLVARTGNRAEAEDLIQELWLR
                     AERVPSGPVANGRAYMFRIANNLVLDQARERRRRIERDNAWHDHAYGNGGSGPEAADP
                     RPDAEQALAEREEAALLASAIANLPEGARRAFRLHKIDGLSHSEVAARLGISKSGVEK
                     HIALAMRHLRRALGD"
     gene            1992..2924
                     /locus_tag="VE567_03610"
     CDS             1992..2924
                     /locus_tag="VE567_03610"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HYZ47961.1"
                     /translation="MNDDTIFEEAVEWVAALKRDDADWNAFTHWLEAAPTHRDAYDAM
                     ALLDERIDAQRATLATLLMPEEPPARLARTWWLWSGGAGIATAAALAGLMLLPAPASK
                     EQVYRTAPGQTQEIALADGSDIRLASASSLSVKDGGRQLALEGTASFDVPHRPDRSLT
                     IEAGGLSIQDIGTRFEVATGGQAVRVAVADGQVAVAAPELSQPVRVSGGKKLVVDRAA
                     GTAELRPMGEFASWRHGRLVYDNAPLPLVAAEVGRYAGRHVTLSPELASRRFSGVLTI
                     GDGNRLVGDLANLMQLDARADGTVVRLAGHSGRP"
BASE COUNT          463 a         1046 c         1085 g          502 t
ORIGIN      
        1 cgccccctcc ggcccgcagc ccgccgaggg tccgggctat ggcgcgacga tgtggctgtt
       61 cgggccgaaa cagggcctgc cccaggggag ctacgccgcc caaggcaatc gcggccagtt
      121 tatcatggtg atcccgtcga agcgcctcgt catcgtccgc cgcggcgagg acccggcggg
      181 ggcgccgttc gacatcgcca aattctcggc cgatgtggcg tcggcgttga aatgaggagt
      241 tggggcgagg tcgtggcctt cgctttggcg ctgcgcttcg gggagcggcc ctgacgcgct
      301 tctcccattt cgccgcgatc gactggtcgg gcgctgccgg cccgcggcag aagggcatcg
      361 cggtcgcggc ctgcgcggcc ggtcgcgatg cgccggagct ggtgcgcctc ggccatatct
      421 ggtcgcgaat ggaggtgctc gactggctgc tggcgctcga cggcgactgg ctggtcgggc
      481 tcgacctctc gccctcgctt gccttcgccg attgtggggc cttcttcccg ggctgggacc
      541 gcagcccgag cgacgtgcgc cgtctctggg cgctcgtcga ggagatcgcg gccggcgagc
      601 cgcacctcgg cgcgaaccgc ttcgtcgatc atcccgaggc gagccgccac ttccgccgcc
      661 atggcggccg ctgcggcgac ctgttcccgc cgggcgccgg ccgcttccgg gtggtcgagg
      721 acgccagccg cgagcagggg ctgtgcaacc cctatagcaa ttttaacctg gtcggggcgg
      781 ctcaggtcgg gaagtccagc ctgaccggca tgcgcctgtt ccaccggatc gacggcaagc
      841 tgccgatctg gccctatgat ccggtgccgg agcgcggacc ggtggtggtc gaaatctaca
      901 ccagcatcgc cgccaccgcc gccggtctga agcgcggccg caccaagatc cgcgatcccc
      961 acacgctcga tggcgcgctc gcccaactcg gcagcgaatc ccaccgcccg ctcgcccgct
     1021 atgacgacca cgcgaccgac gcgatcctcg ccgccgcctg gctccgcgcg gtcgcgcaca
     1081 atgaggggct gtggcgcccg caccgcctta cgcccgaact cgcgcgcacc gagggctgga
     1141 ccttcggcgt ccgataaagc attggagcga tccggattgg cccggcgtcg tcgccgtgcg
     1201 atccggacaa gggcatgccg ggttagctca gctggtagag caaccgcctt gtaagcggta
     1261 ggtcgtccgt tcgagtcgga cactcggcac cacccgcgcg ataatcgcgt tctggcttcg
     1321 ttcttcgtaa taaaaaatcc acgacgacta cgctaaggga gcgctcgtca ctacggtttt
     1381 gacagggcgg ccgcccttgg aggatgtgct tggcggtaat gaccaccgac cgaccctccg
     1441 gcctctctgc gctctttgag gcgcatcgcg ccgaattgct gcggtttctg gttgcccgca
     1501 ccggcaatcg ggccgaagcc gaggatctga tccaggagct gtggttgcgc gctgagcgtg
     1561 tcccgtcggg cccggtcgcc aacgggcgcg cctatatgtt ccgcatcgca aacaatctcg
     1621 tgctcgacca ggcgcgggag cgccggcggc ggatcgagcg cgacaatgcc tggcacgatc
     1681 acgcctatgg caatggcggg tccgggcccg aggctgccga tccgcgacct gatgcagagc
     1741 aggcgctggc cgagcgcgag gaagcggcgc tgctcgcctc cgcgatcgcc aacctgcctg
     1801 agggcgcacg gcgcgctttc aggctgcaca agatcgacgg tctcagccat agtgaggtcg
     1861 cagcgcggct gggcatcagc aaaagcggag tcgagaagca catcgcgctg gcgatgcggc
     1921 atttgcgccg cgcacttggc gactgaggcg cagcgccgcg gcggcgtctt aacagccgtg
     1981 ggacatgcgc gttgaacgac gatacgatct ttgaagaggc tgtcgagtgg gtcgcagcgc
     2041 tgaagcgcga cgacgccgat tggaacgcat tcacccactg gcttgaggcc gcccccacgc
     2101 atcgcgatgc atatgacgca atggcgctgc tggacgagcg gatcgatgcg cagcgcgcca
     2161 cgctcgccac actcttgatg ccggaggagc cgcccgcccg cctggctcgg acttggtggc
     2221 tttggagcgg tggcgccggc attgcgaccg cggcggcgct ggccggtctg atgctgctcc
     2281 ctgccccggc gagcaaagag caggtctatc gcaccgcgcc gggccagacg caggagatcg
     2341 cgcttgccga cggatcggac atccggcttg cctcggcaag cagcctcagc gtcaaggacg
     2401 gcggccgtca gctcgcactg gaaggcacgg cgagcttcga tgtgccgcat cgcccggatc
     2461 ggtcgctgac gatcgaggca ggcgggcttt caatacagga tattggcacg cgtttcgaag
     2521 tggcgacggg cggtcaggcg gtgcgcgtcg cggtcgcgga cggccaggtc gccgttgccg
     2581 cacccgagtt gtcgcagccg gtccgcgtga gcggcggcaa gaagctggtg gtggaccgcg
     2641 cagccggcac ggccgagctg cgcccgatgg gcgagttcgc gagctggcgc catggccgac
     2701 tggtctatga caatgcgccg ctgccgctgg tcgcagccga agtggggcgc tatgccgggc
     2761 ggcatgtcac cctttctccc gagctggcaa gccggcgctt ttcaggcgtg ctgacgattg
     2821 gcgatggcaa tcgattggtc ggcgatcttg caaacctcat gcagctggac gcacgcgcgg
     2881 atggcacggt cgtgcgcctt gccggccata gcggccgtcc ttagcacgcc cgcggcagct
     2941 gctcccgcca cgcgtgcaat cgaaattcca gcgggcacgc ttggccgcag cctggaattg
     3001 ctcgccgccc agacaggtgc gtcgatcggc gccgaaggcg cgttgcctgt ggtgcgcgct
     3061 cccgcggtgc gtgggcgcat gagcaccgag gcagcg
//
LOCUS       DASQVK010000172         3553 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_264182,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000172 DASQVK010000000
VERSION     DASQVK010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3553
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_264182"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..973
                     /locus_tag="VE567_03615"
     CDS             <1..973
                     /locus_tag="VE567_03615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="translocation/assembly module TamB
                     domain-containing protein"
                     /protein_id="HYZ47962.1"
                     /translation="ARGVGMDLSITAQNAVLLNRDELGANVTGPLRITSDGYGGLIAG
                     DVSLDRSRYRLGRARAATTVSRLANLTERNRPADEAGSPTPPAPWRLNLKATARNRLM
                     VTGLGLDSEWRAGLGITGTVDQPVLVGTATLLRGGYQFAGRRFDLERGTIRFNGTSPP
                     DPVLDIAAAANIQGLSATIRVTGTGLKPDIAFTSNPALPEDELLSRLLFGTSISNLSA
                     PEALQLASAVAALQSGGGLDPINALRRAVGLDRLRIISADPTIGQGTAIAAGKYITRR
                     AFVEVITDGQGYSATRIEFQITRWLSVLSTISTIGRQSANVRVSKDY"
     gene            complement(1107..1934)
                     /locus_tag="VE567_03620"
     CDS             complement(1107..1934)
                     /locus_tag="VE567_03620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47963.1"
                     /translation="MQIDIFVPSKDASYASMAADRLERYRTLLARHGCSLEPRPWPEG
                     PGEQPTLALLAWGYHAEVRGWEKLLDDWPPDVPLLNPPALMRWNTRKTYLSDFERAGV
                     PTVPTLFGDADAESVSVAFDRLGADELVVKPQISAGSDRTSRVQRGETVAPLEEAMIQ
                     PFLPSVAGEGEYSLFYFGGAPAHAIRKVAATGDFRVQPEFGSRIEPWSPDAEARATAD
                     AAMAAAPPGAVYVRIDLVRRLDGRLALMEFEAIEPDLYLQYDKEAGDRFAEALLASF"
     gene            2094..2771
                     /locus_tag="VE567_03625"
     CDS             2094..2771
                     /locus_tag="VE567_03625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018251091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYZ47964.1"
                     /translation="MPILIVEDDDDLGGALVASLARRGMPAELADSLAGARRQMAGAS
                     FEAIVLDLGLPDGDGTILLEELRRAHNPIPVIVLTARGAVADRIHGLTMGADDYLPKP
                     FDLEELHARLLAVLRRNSGIVGPAVQVGNVILDRTTREALIDGRSAGMTEREFELFEL
                     LATRPGRSISKQQAEQKLFGSEEAVGSSAVEVAMSRLRRRLKDAGAGVEILTVRGIGY
                     VLRPIPA"
     gene            2792..>3553
                     /locus_tag="VE567_03630"
     CDS             2792..>3553
                     /locus_tag="VE567_03630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47965.1"
                     /translation="MGQIIVANVATFIAAAILVPIVSTRLLDRVAVKYQRLALRTQAD
                     GIADELRSQPGKNLSLPRGANLDLNFADAFAGHSFAVLAQNGEVLLASGETGVTLQTA
                     PRANRTVFFRRGPILSVSLPADISGRRCWIIASHDLRSPGAISDDIVGGFSSRLLLLL
                     APTFALLLLLNLFLVWGTVTAIQRASRVAESIGSADHDRRVHPGSLPMEIAPLAEAMN
                     GALDRLQSSLRSRSAFIANVAHELRTPLATFKLKLE"
BASE COUNT          581 a         1171 c         1171 g          630 t
ORIGIN      
        1 agcgcgcggc gtcggcatgg atttgtcgat taccgcgcag aatgccgtgc tactcaatcg
       61 ggacgagctc ggcgcaaacg tcaccgggcc gctgcgcatc acgtccgacg gctatggcgg
      121 gctgatcgcg ggcgacgtct cgctggaccg cagccgctac cgcctcggcc gggcgcgcgc
      181 cgccaccacc gtttcccggc tggcgaacct gaccgaacgc aaccgccccg ccgacgaagc
      241 ggggtcaccc acgccgcctg caccatggcg gctcaacttg aaggcgaccg cgcgcaaccg
      301 gctgatggtg acgggcctgg gactcgacag cgagtggcgc gcaggccttg gcatcacagg
      361 caccgtcgac cagccggtgc tggtcggcac cgccactttg ctacggggcg gctatcaatt
      421 cgccggccgc cgcttcgacc tggagcgcgg caccatccgc ttcaatggca cgagtccgcc
      481 tgatccggtg ctcgacatcg cggccgctgc gaacatccag ggcttgagcg ccacgatccg
      541 cgtgactggc actggtctca agccggacat cgccttcacc agcaatccgg cgctgcctga
      601 ggatgaatta ctgtcgcgcc tgctgttcgg cacctcgatc agcaacctgt cggcgcccga
      661 ggctttgcaa ctcgcaagtg cggtcgcggc gctgcaaagc gggggcggcc tcgatccgat
      721 caatgcgcta cgccgcgcgg tcgggctcga ccggctccgg atcatctcgg ccgaccccac
      781 gatcgggcag gggacggcga tcgccgcggg caagtatatc acccgccgcg ccttcgtgga
      841 ggtgatcacc gatggtcagg gctattcggc gacgcgcatc gaattccaga tcacgcgctg
      901 gttgtcagtg ctttcgacca tctccacgat tggccgtcag agcgcgaacg tgcgggtttc
      961 gaaggactat tgaacgggac ggacgcgttc ctatctggtt cttgccattc ggatcgtcgg
     1021 tgtctgggca ctgcgcggaa tcccccttcc gctgcggccc ggcgcgggcg ggcggcgcgg
     1081 ctccctccct tgccgcgccg ccgaactcaa aacgaggcga gcagcgcctc tgcgaagcgg
     1141 tcgccagcct ccttatcata ttgcagatac aggtcgggct cgatcgcctc gaattccatc
     1201 agcgcgagcc ggccgtcgag ccgcctcacc agatcgatcc gcacatatac cgcgccaggc
     1261 ggggcagcgg ccatcgccgc gtcggcagtc gcgcgggctt cggcatccgg cgaccagggc
     1321 tcgatccggc tgccgaactc gggctgaacg cggaaatcac ccgtcgccgc cactttgcgg
     1381 atcgcatgcg ccggggcccc gccgaagtag aagagcgaat attcgccttc gcccgcgact
     1441 gacggcagga aaggctggat catcgcttcc tcgagcggcg ccaccgtctc gccgcgctgg
     1501 acgcgcgagg tgcggtcgct gccggcggag atttgcggct ttacgaccag ctcgtcggcg
     1561 cccagccgat cgaacgcgac gcttacgctc tcagcgtcag cgtcgccgaa cagcgtcggc
     1621 acggtcggta cgccggccct ttcgaaatcg cttaaatagg tcttgcgcgt gttccagcgc
     1681 atcagcgcgg gcggattgag cagcggcacg tctggcggcc agtcgtcgag cagcttttcc
     1741 cagccgcgca cctccgcatg atagccccag gcgagtagcg ccagcgtggg ctgctcgccc
     1801 gggccctcgg gccatggccg cggctccagc gagcagccgt ggcgcgcgag cagggtacga
     1861 taacgctcca gccggtcggc tgccatcgac gcataggagg cgtccttgga aggcacgaaa
     1921 atatcgattt gcatcaggag aaacgcgcgt cagtgggcgg cgaaggcggg ctggacatcg
     1981 acgccgaata ggcgaggatc gggcgcagcg gcaacagcgt cgatgcgccc tggcttgacg
     2041 gccgctctcg agccgaacat ctggcagcac gttcccggcc gaaagattga tccatgccta
     2101 ttctaatcgt tgaggacgat gacgatctcg gcggggcgct ggtcgcctct ctcgctcgtc
     2161 ggggcatgcc cgccgagctg gccgactcgc ttgccggcgc gcggcgccaa atggcagggg
     2221 cttcgttcga ggcgatcgtc ctcgatctcg gcctgcctga cggggacggc acgattctgc
     2281 tcgaggagct caggcgggcg cacaatccta ttcccgtcat cgtgctgacc gcgcgcggtg
     2341 cagtggcgga ccgcattcat ggcctgacta tgggcgcgga cgactatcta cccaagccgt
     2401 tcgacctgga agaacttcat gcgcgcctgc tggcggtttt gcggcgcaat agcgggatcg
     2461 tgggcccggc cgtgcaggtc gggaacgtca ttctcgaccg gaccacgcgc gaggcgctga
     2521 tcgacggccg gtcggccggc atgacggagc gagagttcga gcttttcgag ctgcttgcta
     2581 cgcgtcccgg ccggtcgatt tccaagcagc aggcggaaca gaagctcttc ggcagcgaag
     2641 aggcggtcgg ctcaagcgca gtcgaagtcg cgatgtcgag gctgaggcgc cggctcaaag
     2701 acgctggtgc gggcgtcgag atcttgacgg tgcgcggcat cggctatgtg ctgaggccga
     2761 taccggcctg atgcgcctgt ccagatcgct cttggggcag atcatcgtcg ccaacgtggc
     2821 gacattcatt gcggccgcaa tactcgttcc gatcgtcagc accaggctgc tggaccgtgt
     2881 tgcggtcaaa tatcagcgac tggccctgcg cacccaggcc gatgggattg cggacgaact
     2941 gagaagccag cccggcaaaa atctgtcatt gcctcggggc gccaatctgg acctgaattt
     3001 cgcggatgcg ttcgcgggcc actcgttcgc cgtccttgcc cagaacgggg aggtattgct
     3061 ggcaagcggt gaaaccggcg tgacccttca aactgccccg cgggcgaaca gaaccgtctt
     3121 tttccgacgc ggtccgattc tgtcggtaag cttgccggcg gatataagtg gccggagatg
     3181 ctggatcatc gcatcccatg atttgcgttc gcctggcgcc atctctgatg acatcgtggg
     3241 cggcttctcg tctcgtctgc tgctcctgct cgccccgacc ttcgccctgt tgctactgct
     3301 caatcttttc ctggtgtggg ggacggtgac cgcgatccag cgcgcttccc gggtggccga
     3361 gtcgattggg tcggcggatc atgaccggcg agtccatccc ggcagcttgc ctatggagat
     3421 cgcgccgctg gccgaggcaa tgaacggcgc gttggaccgc ctccagtcga gtttacgctc
     3481 gcggagcgcg tttatcgcga atgtggcgca cgaacttcgt acgcctttgg ctacgttcaa
     3541 gctcaagctc gag
//
LOCUS       DASQVK010000173         4787 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_295562,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000173 DASQVK010000000
VERSION     DASQVK010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4787
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295562"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(128..664)
                     /locus_tag="VE567_03635"
     CDS             complement(128..664)
                     /locus_tag="VE567_03635"
                     /inference="COORDINATES: protein motif:HMM:NF013315.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47966.1"
                     /translation="MLQALKKIPIEGFLPSPGILRTRSEDDEIVAVAFMAALLRARKE
                     EPMLQIGFGSGYETAILARISRSVLVDEDDPQRAQAALARLARLGIVNVRWAGAADPR
                     EMPDLPNYATIFMTGVVADWPQSVAARLRSGGRLVARIGGPVGIPHYALGQKRRDGTL
                     RVSSFGIDLLRPVGLPSR"
     gene            complement(945..2300)
                     /locus_tag="VE567_03640"
     CDS             complement(945..2300)
                     /locus_tag="VE567_03640"
                     /inference="COORDINATES: protein motif:HMM:TIGR01843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030253 - protein secretion by the type I
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HYZ47967.1"
                     /translation="MSAALIPYADPEVPAELGDDPRWERRLAAGIAGFFFIGLLGWAA
                     LTPLDAAAYGHGVVEVAGNRQAVQHRDGGIVAALMVKEGDRVASGQPLLRIVSADIEA
                     EERGLTSEYLGLLAQRARLQAERQGRSDIPVPAEFAGLSDADRGIAAQLLREQAAVLR
                     ARQASQAGQQSVLGQRARQSGAEIRGYQADIEASVEQLRLLEVQIQGMKELEAKGFAS
                     ANRIRELERQAAALRGSIGQNTAMIARSQEVSGENRMRALTLERGNLVDIDDQLRDTA
                     LRLNEARPKLTAARERLARTVVRAPAAGRIVSLSVFTVGGVIAAGEPLMYIVPDNREL
                     VVQARLSPDDADDVQAGLPAKVRFPSLHERDAPQLDGRVAVMSADALTDEKSGAHYFA
                     AEIRVPSAGLERYRALRPGADPIRAGLPADVLISLRKRTVLGYLLEPLIQSTWRSGRE
                     H"
     gene            complement(2304..4055)
                     /locus_tag="VE567_03645"
     CDS             complement(2304..4055)
                     /locus_tag="VE567_03645"
                     /inference="COORDINATES: protein motif:HMM:TIGR01842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030253 - protein secretion by the type I
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I secretion system permease/ATPase"
                     /protein_id="HYZ47968.1"
                     /translation="MFLLRSDLPPVLAQAFRACREHLRLAAGLSALVAVLYLAPTIFM
                     MQVYDRVVPTSGTVTLAWLVLVIATALGVLAALDWLRGRLLVRAGLRLDRLLAPEIVD
                     RLFKAGRDKVNPETTRQALREFDTLRQALSGPPALALLDACWAPVFIVACALIHWSMG
                     LLVLASAAVLLAITLLNERTNRGRARESMRHVLLAYARQERLAARGELVRALGMRTSL
                     AARQIAERRQGLSTVAGYQLAAGGFTATARFARLFLQSGALALGALLAIDGEISAGSI
                     VAVSVLLSRALAPIEALVANWSQLTQARQALDTIAKLIQATESDRREPFPHPRPRGEL
                     QVRDLGLHRADGGPPLLDGVSFDARPGEMVGIAGASGAGKTSLARLLSGAVTPDAGSI
                     RIDGVALPDWDTERLAAYIGYLPQETALLPGTIAENISRFALPKSAAEREAVAKQVIA
                     AAEIAGAHMMINGLPGGYDAPVGWDGEGLSAGQRQRVALARALYGDPALLVLDEPNSA
                     LDSEGEAALMRAVEQMRDRGACVIVIAHRSAILAPASRLLVLDRGKVDLFGPAAEVIE
                     KLKSRSARANVVKIRTN"
     gene            4114..>4787
                     /locus_tag="VE567_03650"
     CDS             4114..>4787
                     /locus_tag="VE567_03650"
                     /inference="COORDINATES: protein motif:HMM:NF021589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HYZ47969.1"
                     /translation="MTIACRRQTDMTLSRNRRQSLKERPCGRGSLLLREPVLLVAAGL
                     LACQPAAAQVLSGGEGKLFRSDVAGTRFEPAFVPRPHNLGQFALSLTPGVRTRYDSNV
                     LNSPDDPRADIVAVLQPALQLQSLQTTNGLGLNASARITRYRDNPRQDSNEYDIEAFS
                     RLDFADESHLTGRLGFSRSVERRGDGGPNPLFAGPPAFKQLDASLDGGLEMGALSFES
                     RFFATR"
BASE COUNT          824 a         1658 c         1543 g          762 t
ORIGIN      
        1 cgctgccgct cgcgcaaccg ttgtcgggcg ctacgatctc gccgagtgtc tgagacggca
       61 agtcgcgttg atccgcacgg tcgcccggca gtagcgcgtc gttggcggga ctgcctgacc
      121 gaccggttta gcggctcggc aaaccgaccg gccggagcaa gtctatgccg aagctggaga
      181 cgcgcagggt tccgtccctt cgcttctgac ctaaggcgta gtggggaatg ccgaccggac
      241 cgccgatccg cgcgaccagg cgcccgcccg aacggagtcg cgccgccacg gactggggcc
      301 aatcggcgac gacgccggtc atgaagatgg tcgcgtagtt cggcaggtcc ggcatctccc
      361 gcggatcggc ggcgccggcc cagcgcacat tgacgatacc gagccgggcg agcctggcga
      421 gcgccgcctg ggcacgttgc gggtcgtcct cgtcgaccag cacggatcgc gaaattcgcg
      481 cgaggatcgc cgtctcgtag cccgaaccga atccgatctg aagcatcggc tcctctttgc
      541 gagcgcgcag caacgccgcc atgaaggcta cggcgacgat ctcatcgtcc tcgctccgcg
      601 tgcgcaggat tccaggcgag ggcaggaagc cctcgatcgg gatttttttc agggcttgaa
      661 gcacggccgt aagccggtcg tccctcgcaa tacctgcatc cagaagcctt ttgcgcaacc
      721 gcgcaatggg caacaatcgc tgcccttcgt ccacagccgg ccgagcgctc cagtcaagcg
      781 cactccggtc gtccggctgt acggctaccg accccctcat tttccccgcc ccacaaggcc
      841 ttgggcgctc aggacccccc ggcgccaacc cagggttagc aagcacatga aaaagacgac
      901 ggcgtttcag gtttgtgacg aatacggaaa gattccgagt cggttcagtg ttcgcgcccc
      961 gaccgccaag tcgattggat cagcggctcg agcaggtagc cgagcactgt ccgcttgcgc
     1021 agcgaaatca gcacgtccgc cggcagacca gcccggatcg ggtccgcgcc cggccgcaac
     1081 gcgcggtagc gctccagccc tgcgctcgga actcttattt cggccgcgaa ataatgggcg
     1141 ccgcttttct cgtccgtaag cgcgtcggcc gacatgaccg cgacgcgccc gtccagttgc
     1201 ggcgcgtcgc gctcatgcag cgatggaaag cgcaccttgg cgggcaagcc ggcttgcacg
     1261 tcgtcggcat catcgggcga caggcgggcc tggacgacga gctcgcggtt gtccggcacg
     1321 atatacatca gcggctcacc cgcggcgatc acgccgccca ccgtgaaaac ggacaggctg
     1381 acaattcggc ccgccgccgg cgcgcgcacg actgttcgcg ccaaacgttc gcgcgcggcg
     1441 gtcagcttgg gccgcgcctc gttcagtcgc agcgcggtgt cgcggagctg gtcgtcgatg
     1501 tcgactaggt tgccgcgctc cagcgtcagc gcgcgcatgc ggttctcgcc ggaaacttcc
     1561 tggctgcggg cgatcatcgc cgtgttctgg ccaatcgacc cgcgcaatgc tgcggcctgc
     1621 cgctccagct cccggatccg gttggccgac gcaaatccct tcgcttccag ctccttcatc
     1681 ccttggatct gcacttccag cagccgaagc tgttcgacgg aagcctctat gtctgcctgg
     1741 tagcccctga tttcggcacc cgactggcgc gcgcgctgcc ccaggaccga ttgctgcccc
     1801 gcctggctgg cctgccgcgc tcgcagcaca gctgcttgct cgcgtagcaa ttgcgccgca
     1861 atgccccgat cggcgtcgga aagaccggcg aactcggccg gcacgggaat gtccgagcgt
     1921 ccctggcgct ccgcctgaag ccgcgcgcgt tgcgcaagca gacccagata ctcggaagtc
     1981 agcccccgct cttccgcctc gatatctgca ctgacgatgc gcagcagcgg ttgcccgctt
     2041 gcgacgcgat cgccttcctt gaccatcagc gccgcaacga tgccaccgtc gcggtgctgg
     2101 accgcctggc ggtttccggc gacctcgacc acgccgtggc catacgcggc agcgtcgagc
     2161 ggggtcagtg ccgcccaacc gagcaggccg atgaagaaga agccggcgat tccggccgca
     2221 aggcgccgct cccagcgcgg atcatcgccc agctcggcag gaacctccgg atcggcatag
     2281 ggtatgagcg cagcggacaa gggtcagttg gtcctgatct tgacgacatt cgcccgcgcc
     2341 gagcgggatt taagcttctc gatcacctcg gcggcaggcc cgaacaggtc cactttgcca
     2401 cggtcaagga ccagcaggcg cgaggcgggc gcaaggatgg cggagcgatg ggcgatcacg
     2461 atcacgcaag ctccgcggtc acgcatctgc tccaccgcgc gcatcagcgc agcctcgcct
     2521 tcgctgtcga gcgcagaatt gggctcgtcg agcacgagca gagccggatc gccatagagc
     2581 gcgcgcgcca gcgccacccg ctgacgctgg ccggccgaca atccctcgcc gtcccagccg
     2641 accggcgcgt catagccccc aggtaaacca ttgatcatca tatgggcccc ggcgatttcg
     2701 gcggccgcga tgacctgctt tgcgaccgct tcgcgttcgg ccgcgctttt tggcagagcg
     2761 aaacgggaga tgttctcggc gatcgtgccg ggcagcaatg ccgtctcctg cggcagatag
     2821 ccgatatagg cggcgagccg ctccgtatcc caatccggga gcgcgacgcc gtcgatgcgg
     2881 atcgagccgg catccggcgt aacggccccg ctcaacaggc gcgcaaggct ggtcttgccg
     2941 gcgcctgacg ccccggcgat tccgaccatc tcgccgggtc gggcatcgaa gctcacgccg
     3001 tcgaggagcg gtggaccgcc atccgcgcgg tgcaggccaa gatcgcgaac ctggagctcg
     3061 ccgcgtgggc gaggatgcgg gaagggttcg cggcggtcgc tctccgtcgc ctggatgagc
     3121 tttgcgatcg tgtcgagcgc ctggcgcgcc tgggtaagct gactccaatt agcgaccagc
     3181 gcctcgatcg gagcgagcgc tcggctgagc agcactgata ccgcgactat cgaacccgcc
     3241 gaaatctcgc cgtcgatcgc caggagtgcg ccgagggcaa gcgctcccga ctgcaggaac
     3301 aggcgcgcga accgcgccgt cgccgtgaag cctccggctg ccagctggta gccggcgact
     3361 gtcgacaggc cttgccggcg ctccgctatt tgccgcgccg caagcgaggt gcgcatcccc
     3421 agcgcacgga cgagttcacc ccgcgcggcc agccgctcct gccgggcata ggcgagcaag
     3481 acgtggcgca tcgattcgcg cgccctgcca cggttggtac gctcgttcag cagcgtgatt
     3541 gccagcagca ccgccgccga ggccaggacc agcaggccca tgctccaatg gatgagcgca
     3601 caggcgacaa tgaagaccgg cgcccagcag gcgtcgagca gcgcaagcgc gggcgggccg
     3661 gacagcgctt gccgcagcgt gtcgaattcg cgcaatgcct gacgcgtcgt ttccgggttg
     3721 accttgtcgc gcccagcctt gaacaggcgg tccacaattt ccggcgcgag cagccggtcg
     3781 aggcgcaatc ccgcccggac cagcagccgc ccgcgcagcc agtcgagcgc ggcaagcacc
     3841 ccgagcgcgg tcgcgatgac cagaacgagc caggccagcg tcacggtccc gctggtcggc
     3901 accacgcggt cgtacacctg catcatgaaa atggtcggcg cgagatacag cacggcgaca
     3961 agcgcgctaa gtcccgccgc aagccgcaga tgctcgcggc aggcccggaa cgcctgagcc
     4021 aacacgggag gcaggtccga ccgcaataaa aacatgctgc gcgccccccg agtccccgca
     4081 gcgtaaggta aacagcctat caatgacgcc aacatgacga ttgcgtgtcg acgtcaaaca
     4141 gacatgactt tgtcacgaaa tcgtcgtcaa tcactgaaag agcggccctg cggtaggggg
     4201 agtttattgt tgcgggagcc tgtccttttg gtggcggctg gcctgctcgc ctgtcagccc
     4261 gcagccgcgc aggtcttgtc cggtggtgag ggaaagctgt ttcgcagcga cgtagcgggc
     4321 acgcgatttg agccggcctt tgtgccgcgc ccacataatc tgggtcagtt tgcgctgagc
     4381 ctcacgccgg gcgtgcgcac gcgatacgat tccaacgtgc taaatagtcc ggatgatcca
     4441 cgggcggaca ttgttgccgt ccttcagccc gcgctgcagc tgcagtcgct gcagacgacc
     4501 aatggcctgg ggctgaacgc ctccgcccgc atcacccgat accgggacaa tccccggcag
     4561 gacagcaacg agtatgatat tgaagcgttc agccggctcg atttcgcgga cgagagccat
     4621 ttgacgggcc ggctcggctt ctcgcgatcg gtcgagcgac ggggcgatgg cggccccaat
     4681 ccgctgttcg ccggaccgcc cgccttcaaa cagctcgacg cttcgctcga cggcggtctg
     4741 gaaatgggcg cgctcagctt cgagtcgcgg ttttttgcca cgcggca
//
LOCUS       DASQVK010000174         6712 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_295585,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000174 DASQVK010000000
VERSION     DASQVK010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6712
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295585"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..180
                     /gene="zapE"
                     /locus_tag="VE567_03655"
     CDS             <1..180
                     /gene="zapE"
                     /locus_tag="VE567_03655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013040647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AFG1/ZapE family ATPase"
                     /protein_id="HYZ47970.1"
                     /translation="FVTLIDALYEQKVKLLAAADAEPAELYEKGDGRFEFERTVSRLM
                     EMRSDDYLAEGHGGK"
     gene            285..1676
                     /locus_tag="VE567_03660"
     CDS             285..1676
                     /locus_tag="VE567_03660"
                     /inference="COORDINATES: protein motif:HMM:NF006596.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYZ47971.1"
                     /translation="MRLVGLIALLAATPALATPANNPWHAKARDMLKHAIEVPTVAGR
                     GRVPELARWFGEQYKAAGWADQDIKVVPYEGVPGDKTAALIVRWPGTGKGKPIMLMAH
                     LDVVEAKPEDWSQDPFTFIEKDGYYYGRGTSDIKQGAVAITTALLQLKAKGFKPKRDL
                     IVLFTGDEETAGNGATLAATEWPDFKGVEFGLNSDGGGGGFRPDGTPLGFSIDTAEKT
                     YADYHFTVRDSGGHSSKPKPFSPITELSAALVRLGAYRFEPALNETTRAYFQERQKGE
                     KGPLGEAMRAWLANPNDGKAADIIEADPGEVGLTRTRCVATMLTGGHAPNALPQLAQA
                     TVNCRILPGVSPDAIRDELQKIAGGKVEVTRMDRNATSFASPLRPDIMTAFTQSVHAM
                     FPNAPVIPTMAAGASDARPFRVAGIPVYGLDGSWGVVPDDMRAHGRDERLPVKALDDD
                     VDHWVRLLTALAK"
     gene            1745..2557
                     /locus_tag="VE567_03665"
     CDS             1745..2557
                     /locus_tag="VE567_03665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007013012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b/b6 domain-containing protein"
                     /protein_id="HYZ47972.1"
                     /translation="MAATRLIYRHRLATRLWHWVNALTIIVLLMSGAMIFNAHPRLYW
                     GQYGANFDSAWLQISADDRGGYLKVGDRRWNTDGVLGRWKAKDGSEQANAFPGWATIP
                     SSYNLALARRWHLTFALVLGFGLLAFLVASLVNRHIARDLTLKRRELTPRHLWHDIVE
                     HLKLRFHNPDDPGAFNILQKLSYVSVIFVLIPLAILTGLTMSPGMDSAWPWLLDLFGG
                     RQSARSLHFIAAALLLLFIVVHLVLVLLSGPLNGVRGMITGWLRVPVKEDGQ"
     gene            2554..3303
                     /locus_tag="VE567_03670"
     CDS             2554..3303
                     /locus_tag="VE567_03670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019367644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HYZ47973.1"
                     /translation="MIVTRRKLIGGIAAGGLLGGCDKLGDSPGFRKILFSAEDAHRFL
                     QRTLTDRMALAREFRADQMSPVFRTNGTSNPGTPDYQAHAATRFADWRLQVGGLVQRP
                     LALSLAQIQSMPTRTQITRHDCVEGWSAIGKWHGVPLKLLLDQAGLRSNARYIVFHCA
                     DLIGDRPYYESIDLVDAFHPQTILAWGMNGHLLDVGHGAPLRLRAERHLGYKQAKYVM
                     RVEAVDDLSRVHGGKGGLWEDIAGYEWYAGI"
     gene            3352..4623
                     /locus_tag="VE567_03675"
     CDS             3352..4623
                     /locus_tag="VE567_03675"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013933551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane-fatty-acyl-phospholipid synthase
                     family protein"
                     /protein_id="HYZ47974.1"
                     /translation="MALFDSMMKRVVRRGKLTIIYANGRRQSFGAPDREIRPVTIRFA
                     DEATPLRIARAPELGAGEAYMDGRLIVEEGDILDLIRLIQAGHPFERGGELASPNPLL
                     RAVDDLRGRLDRFNWSHRAKRNVAHHYDLSDRLYDLFLDADRQYSCAYFTDPANSLEQ
                     AQADKKAHIAAKLALRPGLKVLDIGCGWGGMALYLNRVADVDVLGITLSEEQLKVARR
                     RAQQTGVADRVRFELIDYRYVTGHFDRIVSVGMFEHVGPPHYRTFFRKCHDLLAEDGV
                     MLLHTIGRMGRPGVTDAFTSKYIFPGGYIPALSEVVRASETARLIASDLETLRLHYAH
                     TLQHWYDRTVAHRAEIEALYDARFFRLWQFYLAGALIAFEQGSLCNYQFQYIRDRRAL
                     PITRDYMAKAEAELRGADYRPRSSLTRAGAG"
     gene            complement(4581..6632)
                     /locus_tag="VE567_03680"
     CDS             complement(4581..6632)
                     /locus_tag="VE567_03680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011540806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S46 family peptidase"
                     /protein_id="HYZ47975.1"
                     /translation="MRTGILLTAAAAFALASAARADEGMWTFDAFPTAQMKAAYGWAP
                     DPAWLTRVQNAAVRLTGGCSASFVSADALILTNHHCVVGCLQNLTTPERDLVKAGFNA
                     ADRSKELKCPGQQAEVVTAISDVTPRVTGAIGAATGAALVKARDAEIARIEAEGCQDK
                     ATTRCQVVTLFGGGQYKLYKYRKYSDIRIVWAPEFQAAFFGGDPDNFNFPRYALDVGF
                     LRAYENGKPVKTPAFLKWNPRSPKEGEVTFVVGNPGRTQRLFTQDQMALRRDLGLPLS
                     LTLLSEYRGRLISLMETDPNKMRDGGDELFGIENSFKAYYGQERSLLDRDFAAKLAKD
                     EADLRAKTAGSAAIGDPWTPIAAADARYRDFYYDYYFLEAGAGYGSKLYDYAKALVRA
                     AEERAKPNAERLPGYTESALPLLEKQVTDPEPVYPWLEKMTLEFWLSKTREYLKVDNS
                     QVKALLGKESPESLAERLVAGTKLADPAYRKQLWEGGMAAIQASDDPMVKYALANDAA
                     GRALLARYKAEYDGPVTAAQAQLAKARFAAYGDTLYPDATFTLRISYGQVKGWSERGQ
                     PVPFETKFGGVYDRATGQQPFLLAEAFVAAKSKVDPNVTYDFVTTNDIIGGNSGSPVI
                     ARDGSVIGAAFDGNIHSLGGNFGYDPVLNRTVVVSTAAIQQALESIYPAPALVKELRG
                     R"
BASE COUNT         1139 a         2275 c         2132 g         1166 t
ORIGIN      
        1 ttcgtgacgc tcatcgacgc gctctacgag cagaaagtga aattgctcgc cgccgccgac
       61 gccgaaccgg ccgagctcta tgaaaaaggc gatggccgtt tcgagttcga acgcaccgtc
      121 agccggctga tggaaatgcg ctctgacgac tatctggcgg aaggtcatgg cggcaaataa
      181 tattttgccg cgcgggactt gatccggcct ccccgtttct ttcaactgcc atggcaaact
      241 ggatcccggc tcaagtccgg ggcgaggacg gggaaggata tcaaatgcgc ctggtcggac
      301 tcattgccct gctcgcggcg acgcccgcgc tcgccacgcc cgccaacaac ccctggcacg
      361 cgaaggcgcg cgacatgctc aagcacgcga tcgaagtgcc gacggtcgcc ggccgcggcc
      421 gcgtgccgga actggcgcgc tggttcggcg aacaatacaa ggcggccggc tgggcggatc
      481 aggacatcaa ggtcgtgccc tatgaaggcg ttcccgggga caagacggca gcgctgatcg
      541 tccgctggcc gggcacaggc aagggcaagc ccatcatgct gatggcgcat ctggacgtcg
      601 tcgaagcaaa gcccgaggac tggagccagg acccgttcac cttcatcgag aaggacggct
      661 attattacgg gcggggcacc tccgacatca aacaaggcgc ggtcgccatc acgacggcgc
      721 tgctgcagct caaggccaag ggcttcaaac cgaagcgcga cctgatcgtg ctctttaccg
      781 gcgacgaaga gaccgcgggc aacggcgcga cgctcgcggc gacggaatgg cccgatttca
      841 agggcgtcga gttcgggctc aactccgatg gcgggggcgg cggcttccgg cccgatggca
      901 ccccgctcgg cttctcgatc gacaccgctg agaagaccta tgccgactat catttcaccg
      961 tgcgggattc gggcggccac agctccaagc ccaagccgtt cagcccgatc accgaactgt
     1021 cggcggcgct ggtccggctc ggcgcctatc gcttcgagcc ggcgctcaac gagacgacgc
     1081 gcgcctattt ccaggaacgg caaaagggcg aaaagggccc gcttggcgag gcgatgcgcg
     1141 cctggctcgc caacccgaac gacggcaagg cggccgacat catcgaggcc gatcccggcg
     1201 aagtcgggct gacccgcacc cgctgcgtcg cgacgatgct cacgggcggc cacgcaccca
     1261 atgcgctccc ccagctcgcc caggcgaccg tcaattgccg catcctgccc ggcgtctccc
     1321 ccgacgccat ccgcgacgag ctgcagaaaa tcgccggcgg caaagtagag gtcacgcgga
     1381 tggaccggaa cgcgacgtcc ttcgcctccc cgctgcggcc cgacatcatg acggccttca
     1441 cccagagcgt gcacgcgatg ttcccgaacg cgccggtgat cccgaccatg gcggcgggcg
     1501 ccagcgacgc gcgcccgttc cgggtcgccg gcatcccggt ctatggcctc gacggcagct
     1561 ggggcgtggt gcccgacgac atgcgcgcgc acggccgcga cgagcggctg ccggtcaagg
     1621 ccctcgacga cgatgtcgac cattgggtgc gcctgctcac cgcgctggcg aaatagccgc
     1681 gcccgccggc ttctcccgcc cgtaactctg gcgcattatg tgcgggcaag cgggagaggt
     1741 gcggatggcg gccacgcgac tgatctaccg gcatcggctg gcgacgcggc tctggcattg
     1801 ggtgaacgcg ctgacgatca ttgtgctgct gatgagcggc gcgatgatct tcaacgcgca
     1861 cccgcggctc tattggggcc aatatggcgc caatttcgac tcggcctggc tgcagatcag
     1921 cgccgacgat cgcggcgggt atctgaaggt cggcgaccgg cgctggaaca ccgacggcgt
     1981 gctcggccgc tggaaagcca aggacggatc ggagcaagcc aacgcctttc ccggctgggc
     2041 gacgatcccc tccagttaca atctcgccct cgcccgccgc tggcatctga ccttcgcgtt
     2101 ggtgctgggc ttcggtttgc tcgcgttcct ggtcgcgagc ctcgtcaatc gtcacatcgc
     2161 gcgcgatctc acactcaagc gccgcgaact cacgccccgc cacctctggc acgacatcgt
     2221 cgagcatctg aagctccgct tccacaaccc cgacgatccc ggcgccttca acatcctgca
     2281 gaagctcagc tatgtgagcg tcatcttcgt gctgatcccg ctggcgatcc ttaccggcct
     2341 caccatgtcg ccgggcatgg acagcgcctg gccgtggttg ctcgacctgt tcggcgggcg
     2401 ccaatcggcg cgctcgctcc acttcatcgc ggcggctttg ctgctgctct tcatcgtcgt
     2461 gcacctggtg ctggtgctgc tgtcaggccc gctcaacggc gtgcgaggca tgatcaccgg
     2521 ctggctgcgc gtgccggtaa aggaggacgg gcaatgatcg tcacccggcg caagctgatc
     2581 ggcggcattg ccgccggcgg gctgctcggc ggctgcgaca agctcggcga cagccccggc
     2641 ttccgtaaaa tcctgttttc agccgaagac gcgcaccgct tcctgcagcg cacgctcacc
     2701 gaccgcatgg cgctcgcgcg cgaattccgg gcggaccaga tgagccccgt cttccgcacc
     2761 aacggcacca gcaatcccgg cacgcccgac tatcaggcgc atgccgccac ccgcttcgcc
     2821 gattggcggc tgcaggtggg cggcctcgtc cagcgcccgc tcgcgctctc gctcgcccag
     2881 atccagtcga tgccgacccg cacgcagatc acgcgccacg actgcgtcga gggctggagc
     2941 gccatcggca aatggcacgg tgtgccgctg aagctgctgc tcgatcaggc gggcctgcgt
     3001 tcgaacgccc gctacatcgt cttccattgc gccgacctga tcggcgaccg gccctattac
     3061 gagtcgatcg acctggtcga cgccttccac ccgcagacga tcctcgcctg gggcatgaac
     3121 ggccaccttt tggatgtggg tcatggcgcg ccgctccggc tccgggccga gcggcatctg
     3181 ggctataagc aggccaaata tgtgatgcgg gtcgaggcag tcgacgactt gagccgcgtt
     3241 catggcggca aaggcggcct ttgggaagat atcgccggct atgaatggta tgcggggatc
     3301 tgacggcgcg attttccggg cacaaattca ttccgtatgc gttccgggtg gatggcgctg
     3361 ttcgattcca tgatgaagcg cgtcgtcaga cgcggcaagc tcaccatcat ctacgccaat
     3421 ggccgccggc agagcttcgg cgcgcccgat cgcgagatca ggccggtcac cattcgcttt
     3481 gccgacgagg cgacgccgct tcggatcgcg cgcgcgccgg agctgggcgc gggcgaggcc
     3541 tatatggacg gccggctgat cgtcgaggaa ggcgatattc tcgatctcat ccggctgatc
     3601 caggcaggcc acccgttcga acgcgggggc gagctcgctt cgcccaaccc gctgcttcgc
     3661 gctgtcgacg atctccgcgg ccgcctcgat cgtttcaact ggagccaccg cgccaagcgc
     3721 aatgtcgcgc accactatga tctctcggac cggctctacg atctcttcct cgatgccgac
     3781 cgccaatata gctgtgccta tttcaccgat cccgcgaaca gcctcgaaca ggcccaggcc
     3841 gacaagaaag cgcatatcgc cgccaagctc gcgctgcggc ccggtctcaa ggtcctcgac
     3901 attggctgcg gctggggcgg catggccttg tacctgaacc gcgtcgccga tgtggacgtg
     3961 ctcggcatca cgctcagcga ggagcaattg aaggttgccc gccgccgcgc gcagcaaacg
     4021 ggcgtcgcgg atcgcgtgcg gtttgagctg atcgattacc gttacgtcac cggccatttc
     4081 gatcgcatcg tctcggtcgg catgttcgaa catgtcggcc cgccacacta ccgcactttc
     4141 ttccgcaaat gccacgacct gctggccgaa gacggggtga tgctgctcca cacgatcggg
     4201 cggatgggcc gcccgggcgt caccgacgcc ttcacctcga aatatatttt ccccggcggc
     4261 tatatcccgg cgctgagcga agtcgtgcgc gcgagcgaga ccgcgcggct gatcgcgtcc
     4321 gacctcgaga cgctgcgcct ccactacgcc catacgctcc aacactggta cgaccgcacg
     4381 gtcgcgcacc gggcggagat cgaggcgctg tacgacgcgc gcttcttccg cctgtggcaa
     4441 ttctatctgg ctggcgcgct catcgcgttc gagcaaggta gcctgtgcaa ttaccagttc
     4501 caatatatcc gcgaccgccg cgccctgccg atcacgcgcg attatatggc caaggctgaa
     4561 gcggagctgc gcggggccga ttaccggccg cgcagttcct tgaccagggc cggcgccgga
     4621 tagatcgact ccagcgcctg ctggatcgcg gcggtgctca ccacgaccgt gcggttcagc
     4681 accgggtcgt agccgaaatt gccgcccagg ctgtggatgt tgccgtcgaa agcggcgccg
     4741 atcaccgaac cgtcccgcgc gatcacgggc gaaccggaat tgccgccgat gatgtcgttg
     4801 gtcgtcacga agtcatacgt gacgttcgga tcgaccttcg acttggccgc cacgaacgcc
     4861 tcggcgagga ggaagggctg ctgccccgtc gcacggtcat agaccccgcc gaacttggtt
     4921 tcgaacggca ctggctgacc acgctcgctc cagcccttca cctggccgta ggaaatacgt
     4981 agcgtgaagg tcgcgtccgg gtagagcgtg tcgccatagg cagcgaagcg cgccttggcg
     5041 agctgggcct gggccgcggt gacgggccca tcatattcgg ccttgtagcg ggcgagcagc
     5101 gcccgcccgg cggcgtcatt cgccagcgca tatttgacca tcggatcgtc cgaggcctgg
     5161 atcgcggcca tgccgccctc ccagagctgc ttgcgatagg cggggtcggc gagcttcgtg
     5221 cccgcgacca gccgctccgc gaggctttcg ggcgattcct tgcccagcag cgccttcacc
     5281 tgcgaattat cgaccttcag atattcgcgc gtcttggaca gccagaattc cagcgtcatc
     5341 ttttcgagcc agggatagac cggctcggga tcggtgacct gcttttccag cagcggcagc
     5401 gccgattcgg tatagccggg cagccgctcc gcattgggct tggcccgttc ctcggccgcg
     5461 cggaccagcg ccttggcata gtcgtaaagc ttcgagccat agccggcgcc ggcttcgagg
     5521 aagtaatagt cataatagaa atcgcggtag cgcgcgtccg ccgcggcaat cggggtccag
     5581 ggatcgccga tcgcggcgct gccggcggtt tttgcgcgca gatccgcttc gtccttggcg
     5641 agctttgccg caaagtcgcg gtcgagcagc gatcgttcct gaccgtaata ggccttgaag
     5701 ctgttctcga tgccgaacag ctcgtcgccg ccgtcgcgca tcttgttcgg atcggtctcc
     5761 atcagcgaga tcaggcggcc gcgatattcc gacaggagcg tcagcgacag gggcaagccc
     5821 aaatcgcgcc ggagcgccat ctggtcctgg gtgaagagcc gctgggtccg gcccggattg
     5881 ccgacgacga acgtgacttc cccttccttg gggctgcgcg gattccattt gaggaaggcc
     5941 ggagtcttca ccggcttgcc gttctcatag gcgcgcagga agccgacatc gagggcatag
     6001 cgcgggaagt tgaagttatc gggatcgccg ccgaaaaacg ccgcctggaa ctctggcgcc
     6061 cacacgatcc ggatatcgct gtatttgcgg tatttgtaga gcttgtactg gccgccgccg
     6121 aacagcgtca ccacctggca gcgcgtcgtg gccttgtcct ggcacccttc cgcctcgatg
     6181 cgggcgatct cggcatcgcg cgccttgacc agcgcggcgc cggtcgccgc cccaatcgcg
     6241 ccggtcacgc gcggggtcac gtcgctgatc gccgtcacca cctcggcttg ctggccgggg
     6301 catttcagct ctttcgatcg gtcagcggcg ttgaagccgg ccttgaccag gtcgcgctcg
     6361 ggcgttgtca ggttctggag gcagccaacc acgcaatgat gattggtgag gatcagcgca
     6421 tcggccgaca cgaacgaggc cgaacagccg ccggtcaggc gcaccgcggc attctggacg
     6481 cgggtaagcc aggccggatc gggcgcccag ccataggccg ccttcatttg cgccgtggga
     6541 aaagcatcga aggtccacat gccctcgtcc gcccgcgccg ccgaagccag cgcgaatgca
     6601 gccgccgccg tcagcaaaat gcctgtgcgc atcgcgttcc ccttcttatg tctattcata
     6661 tgcctgtgtc gcaggttctg gccggaaagg tgctcggctg caagcgcggc tg
//
LOCUS       DASQVK010000175         6259 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_200707,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000175 DASQVK010000000
VERSION     DASQVK010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6259)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6259)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6259
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200707"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..809)
                     /locus_tag="VE567_03685"
     CDS             complement(<1..809)
                     /locus_tag="VE567_03685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47976.1"
                     /translation="MNDDADHRRWFLARAPRALWRALTAGRFEEPPQVLKAQLAQIWN
                     SYPATFAASVSVTLGLIGYSYGDPGFWAVLLTGAMHVLICCHMFANWLRNRKAADFDE
                     SVVVQRLRAMPRNAAITSSGWFVFLSSLGINASAQEQLLTVTVMAGVIAIGTLRYSAV
                     PAAAASFLATAAVVCVAYSFATTIPAEIYFFFAVFIAMLGKAVADQVTTLRSQVASLN
                     EAALAQTELSLLRAQEAERHSAAAAREAAEQMAREAEQAQLHRATVSAIASA"
     gene            complement(984..1598)
                     /gene="rpsD"
                     /locus_tag="VE567_03690"
     CDS             complement(984..1598)
                     /gene="rpsD"
                     /locus_tag="VE567_03690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011414051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HYZ47977.1"
                     /translation="MSKRQSAKHKLDRRMGENIWGRPKSPVNKREYGPGQHGQRRKGK
                     MSDFGLQLRAKQKLKGYYGDVTEKQFKKAYEEASRMKGDTSQNLIGLLEQRLDMIVYR
                     AKFAPTIWSARQLVSHGHVRVNGVKCNIASRRVRPGDVVELGSKAQEIALVMEAQSLP
                     ERDIPDYVAPDGNTKITFTRVPTLDEVPYPVKMEPNLVVEFYSR"
     gene            1778..2089
                     /locus_tag="VE567_03695"
     CDS             1778..2089
                     /locus_tag="VE567_03695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010413705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HYZ47978.1"
                     /translation="MPATLLSPAECQTMAEVRAGVDAVDQALVALLSQRFGYMDAAAR
                     IKPERGQVRDEARKAQVIANVRAHAAEAGIPVEPVCEIWDRLVEASIAYELTAFDRLR
                     A"
     gene            complement(2086..2793)
                     /locus_tag="VE567_03700"
     CDS             complement(2086..2793)
                     /locus_tag="VE567_03700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019052531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HYZ47979.1"
                     /translation="MISPPIIVLVRPQLGENIGKAARAMLNFGLTEMRLVAPRDGWPN
                     PSAGPAASGADVVLENARVFDTTADAVADCAHVFATTVRKRGVTKPVLTPEDTARDIR
                     SAPGRSAILFGAERSGLDTEDVALARAIVTVPVNPAFGSLNLAQAVILLAYEWSKGAD
                     LVQPTATELLPPAPQAELEALIAHLEALLEPTGYFTPSERAPATKRTLRGVLTKPGWN
                     SLEIRTLRGVLTALGRN"
     gene            complement(2797..3257)
                     /gene="nrdR"
                     /locus_tag="VE567_03705"
                     /pseudo
     CDS             complement(2797..3257)
                     /gene="nrdR"
                     /locus_tag="VE567_03705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161821.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
     gene            complement(3259..3432)
                     /locus_tag="VE567_03710"
     CDS             complement(3259..3432)
                     /locus_tag="VE567_03710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47980.1"
                     /translation="MDLRRRPDGSMSPDARELRAGAGIGAVLGIPLPVLSWFTGAIVG
                     GAIAAYRIQKRKG"
     gene            complement(3434..4747)
                     /gene="glyA"
                     /locus_tag="VE567_03715"
     CDS             complement(3434..4747)
                     /gene="glyA"
                     /locus_tag="VE567_03715"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008066058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HYZ47981.1"
                     /translation="MSTNPATLPEQQPDGFFTRSLADADPETFSAINKELGRQRDKIE
                     LIASENIVSRAVLEAQGSILTNKYAEGYPGNRYYGGCEYVDIVETLAIERAKQLFGAQ
                     FANVQANSGSQMNQAVFLGLLQPGDPFMGLDLAAGGHLTHGSPVNMSGKWFKPIPYGV
                     RREDQLLDMDEIARIARENRPKLIIAGGTAYSRHWDFKRFREIADEVGAYLFVDMSHF
                     AGLVAGGAHPSPIPYAHVTTTTTHKSLRGPRGGLILTNDEAIAKKMNSAIFPGLQGGP
                     LMHVIAAKAVAFHEALQPEFKSYAASIVENAKALAESLKERGLDIVSGGTDNHLMLVD
                     LRPYHTKGKYAEKALDRASITCNMNTIPFDPEKPKVGSGIRLGTPAGTTRGFGPAEFR
                     QIGGLIASVVEGLRKNGEAGDGQIEARVGEQVSELCARFPIYPEL"
     gene            complement(4744..5193)
                     /gene="rpiB"
                     /locus_tag="VE567_03720"
     CDS             complement(4744..5193)
                     /gene="rpiB"
                     /locus_tag="VE567_03720"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HYZ47982.1"
                     /translation="MPRIAIASDHGAVELKTSLRDWLVELGHDVIDLGTATEASVDYP
                     DFGYRLARAIEAGDAERGVALCGSGIGISIAVNRNPAVRCALVSEPLSARLAREHNDA
                     NVIALGARLIGPEMAKACIETFLATDFLGGRHQRRVEKLSYPVKEPA"
     gene            5267..5800
                     /locus_tag="VE567_03725"
     CDS             5267..5800
                     /locus_tag="VE567_03725"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYZ47983.1"
                     /translation="MIHRTAPELRTNRLRLRPHVREDAEQLVTMWQDPVVVRHFGGQP
                     VAVEDSWNRLLRYVGHWHVNGYGLWAVEELESGRFVGDVGLFEGRRGLGERFDSAPEA
                     GWVLAPLGHGKGYAREAMNAALRWGESEHRWPRTVCMIDPENGPSLRTAEALGYRRFD
                     RQPYKGKDILLLERLSV"
     gene            5939..>6259
                     /locus_tag="VE567_03730"
     CDS             5939..>6259
                     /locus_tag="VE567_03730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47984.1"
                     /translation="MAALAAAALLAGSAQAGCWTDAAYKAAQVRELDTMLMVQALRCR
                     KTAASFVGEYNRFVEVSRPALIQANAELKTHFGGLNAYDNYMTTVANRYGAGSEGLGC
                     SDVAS"
BASE COUNT         1074 a         1924 c         2120 g         1141 t
ORIGIN      
        1 gccgaggcga tggcgcttac cgtcgcgcgg tgcagctgcg cctgctcggc ttcgcgtgcc
       61 atctgctcgg cggcttcgcg cgccgccgcg gcactgtggc gttcagcctc ttgggcgcgg
      121 aggaggctca attctgtctg ggcaagcgcg gcttcattga ggctggcgac ttggctgcgc
      181 agggtcgtaa cctgatcggc cacggccttg cccagcatcg caatgaagac ggcaaagaag
      241 aagtaaatct cagccgggat ggtcgtggcg aagctatagg cgacacaaac gactgccgcc
      301 gtcgcgagga acgaggcggc agctgcgggc acagccgaat agcgcagggt gccgatcgcg
      361 atcacgccgg ccatcacggt aacggttaaa agctgctctt gcgcggaggc gttgatgcca
      421 aggctggaga gaaagacgaa ccagccgctc gaggtgatcg cagcattgcg cggcatggcc
      481 cgcagccgtt ggacgaccac ggattcgtca aaatctgccg ccttgcggtt ccgcagccag
      541 tttgcgaaca tatgacagca gatcaggacg tgcatagcgc cggtcagcag tacggcccag
      601 aagccggggt cgccatagct gtagccgatt aagccaagcg tgaccgaaac gctggcggcg
      661 aaagtggcgg gatagctatt ccagatctgc gcgagctgtg ccttcaggac ttgcggcggc
      721 tcttcaaaac gcccggctgt cagcgcgcgc caaagggcgc gcggcgctcg cgcaaggaac
      781 cagcggcgat gatcggcgtc gtcgttcacg ctgccgctct agcaatcgcg tgcctaatgc
      841 tgcgttaaag caaatgcggc cccggaacga tttgcgtttg cagaaaaaaa gaagacggcg
      901 tggcaaagcc acgccgtcgc cactcgcgag gccaggcgag ccgctgacag gcgaactcgg
      961 tctggctccg ccggtttgcc gcgttaacgg ctatagaatt cgacgacgag gtttggctcc
     1021 atcttcaccg gataaggcac ttcgtcgagg gtggggacgc gcgtaaaggt gattttggta
     1081 ttgccgtcag gcgccacata atcgggaatg tcgcgctccg gcaggctctg ggcttccata
     1141 accagggcta tttcctgcgc cttggagcca agctcgacca catcgcccgg ccgcacgcgg
     1201 cgggaagcga tgttgcactt gacgccgttc acgcggacat ggccgtggct gacgagctgg
     1261 cgcgctgacc agatggtcgg cgcgaatttg gcgcgataga cgatcatgtc cagccgctgc
     1321 tcgagcaagc cgatcaggtt ttgcgaggtg tcgcccttca tccgcgacgc ctcttcatag
     1381 gcctttttga actgcttttc ggtgacgtcc ccgtaatagc ccttcagctt ctgcttggcg
     1441 cggagctgca ggccaaagtc ggacatcttg cctttgcggc gctgaccgtg ctggccaggg
     1501 ccgtattcgc gcttgttcac cggggatttg ggacggcccc agatattctc gcccatccgg
     1561 cggtcgagct tgtgcttggc gctctggcgc ttcgacatcg taaacctttc aatcgctgac
     1621 aacgttattc ccggtcccgc ctgcttgctc gccaatgcga gggcagggcc accgcttcac
     1681 cggggtgcgg ggccaattgc gaagggggcg cgcctatagg aacgcgcgtg gaaggtcaag
     1741 atggacagtg tcgcgcacgc gggtagaagc cctccgcatg ccagcaactc ttctctcacc
     1801 cgccgagtgc cagacgatgg cggaggtgcg cgccggtgtc gatgccgtcg accaggcgct
     1861 ggtcgcgcta ttgagccagc gtttcggcta tatggatgca gcggcgcgga tcaagcccga
     1921 gcgaggccag gttcgcgatg aggcgcgcaa ggcccaggtg atcgctaatg tccgtgctca
     1981 tgcggccgag gccgggattc cggtggagcc cgtttgcgaa atctgggacc ggttggtcga
     2041 ggcctcgatc gcttatgaac tgacggcctt tgatcggctg cgcgcctaat tcctgccaag
     2101 cgcggtcagc acgccgcgga gcgttcgtat ttcaaggctg ttccagcccg gcttggtgag
     2161 gacgccgcgt aaggtccgct tcgtggccgg cgcacgctcg gacggcgtga aatagccagt
     2221 gggctccagc aacgcttcca aatgggcaat cagcgcttcc agctcggcct gaggcgccgg
     2281 cggcagcagc tcggttgccg tcggctggac aaggtcggca cccttcgacc actcataggc
     2341 gagcaggatc acagcctggg cgagattgag ggagccgaat gccggattca ccggcaccgt
     2401 cacgatcgcg cgggcgagtg ccacatcttc ggtgtcgagg ccggaacgct ctgccccgaa
     2461 caggatcgcg ctgcggccag gcgcggaccg gatgtcgcgc gcggtgtcct ccggcgtcag
     2521 caccggcttg gtgacaccgc gctttctgac cgtggtcgca aacacatgcg cgcaatcggc
     2581 gaccgcatca gcggtcgtat cgaacacgcg cgcattctca agaaccacgt ccgcgcccga
     2641 ggcggcaggt ccggcggacg ggttcggcca cccgtcgcgc ggtgccacca ggcgcatttc
     2701 ggtcagcccg aaattgagca tcgcccgcgc ggccttgccg atattctccc caagctgcgg
     2761 acgcacgagc acgatgatgg gcggagagat caagctctac ccatccccgg cttccgccac
     2821 cgcgccggcg aattcgtgga agtcccgcgc ctccgcaaag tccttataga cgctggcaaa
     2881 gcggatatag gcgacggtgt cgaggccgcg cagccttcca tcaccagctc gccgatctgc
     2941 ttggcggcga cttcgttctc gccgctggtt tcgagctggc gctggatgcc gctgatcagg
     3001 cgctcgatcc gcacctgatc gatcgggcgc ttgcggcagg cgatggcgat cgagcgggcg
     3061 agcttgtcgc ggtcgaaggg ctcccggcgg tcctcgctct tgacgacagt gagatcgcgc
     3121 agctggatgc gctcgaacgt ggtgaaccga gcaccgcacc cctcgcattg ccgccgccgc
     3181 cggatcgcag ccccgtcttc ggtcggccgg ctgtccttca cctggctgtc ttcatgtccg
     3241 caataggggc agcgcaattc agccctttcg cttctggatg cgataggcgg cgatcgcccc
     3301 gccgacgatc gcgccagtga accaactcag gacgggaagg gggatgccga gaacggcgcc
     3361 gatcccagct ccggcgcgca gttcccgtgc gtcgggagac atgctgccgt cagggcgtcg
     3421 cctgaggtcc atctcagagc tccggataga tggggaagcg agcgcataat tcgctcacct
     3481 gctcgcccac gcgcgcctcg atctgaccgt cgccggcttc gccattcttg cgcagccctt
     3541 ccaccaccga agcgatcagg ccgccgatct gccggaactc ggcggggccg aagccgcgcg
     3601 tggtaccggc gggcgtgccg aggcggatgc cggagccgac cttgggcttt tccggatcga
     3661 acgggatcgt gttcatgttg caggtgatcg aggcgcggtc cagcgccttt tccgcatatt
     3721 tgcccttggt gtggtatggg cgaagatcga ccagcatcag gtggttgtcg gtgccgccgg
     3781 atacgatgtc gagcccacgc tccttgagcg attcggcgag tgccttggcg ttctcgacga
     3841 tcgaggcggc atagctcttg aactcgggct ggagcgcttc gtggaacgcg acggccttgg
     3901 cggcgatcac gtgcatcaga ggcccgccct gcaggcccgg gaagatcgcc gagttcatct
     3961 tcttggcaat ggcttcgtca ttggtgagga tcaggccgcc acgtggtccg cgcagcgatt
     4021 tgtgggtcgt ggtcgtggtc acatgcgcgt aggggatcgg cgaggggtgc gcgccgccgg
     4081 cgacaagacc ggcaaagtgc gacatgtcga cgaagagata ggcgcccact tcgtcggcaa
     4141 tttcgcggaa ccgcttgaag tcccaatgac gcgaataggc cgtgccgccc gcgatgatca
     4201 gcttcggccg gttctcgcgc gcgatgcggg cgatctcgtc catgtcgagc agctggtcct
     4261 cgcggcggac accatagggg atcggcttga accatttgcc cgacatgttg acgggcgagc
     4321 cgtgcgtcag atggccgccg gccgccaggt cgaggcccat aaaggggtcg cctggctgaa
     4381 gcagccccag gaacacggcc tggttcatct ggctgccgct attggcctgg acgttggcga
     4441 actgcgcacc gaacagctgt ttggcgcgct cgatcgccag cgtctcgacg atatcgacat
     4501 attcgcagcc gccataatag cggttgccgg gatagccttc cgcatatttg ttggtgagga
     4561 tcgagccctg cgcttccagc acggcgcgac tgacgatgtt ctccgaggca atcagctcga
     4621 tcttgtcgcg ctggcggccg agttccttgt tgatcgcgga gaaggtctcg ggatcggcat
     4681 cagcgaggct gcgggtgaag aagccgtcgg gctgctgctc gggcagcgtg gcgggattgg
     4741 tgctcatgcg ggctccttca caggatagga aagcttctcg acgcgccgtt gatggcggcc
     4801 gccgagaaag tcggtggcaa gaaaggtctc gatgcaggcc ttggccattt caggaccgat
     4861 caggcgcgcg ccgagtgcga tgacgtttgc atcattgtgc tcgcgcgcga gccgggcgga
     4921 gagcggttcg gagacgagtg cgcaccggac cgccgggttg cggtttacgg cgatcgaaat
     4981 gccgatgccg gagccgcaca gcgcaacgcc gcgctccgcg tcgcccgcct cgatcgcccg
     5041 ggcgaggcga tagccgaaat ccggatagtc gaccgaagcc tcggtggcgg tgccgaggtc
     5101 gatcacgtca tgcccgagct cgaccagcca gtcgcgcaag ctggtcttca gctcgaccgc
     5161 gccatgatcg gaggcaatgg cgatgcgtgg catagtggtc ccaaattgag gagtcgttgc
     5221 gcgctcttta gggatgtggt gattgttttg ccactagcca gagccgatga tccacagaac
     5281 cgcccctgaa ctccgtacca atcgcctgcg cctgcgcccg cacgtgcgcg aagacgccga
     5341 gcagctggtg acgatgtggc aggacccggt ggtggtccgg catttcggcg gccaaccggt
     5401 cgcggtggag gacagttgga accggctact gcgctatgtc gggcactggc acgtcaacgg
     5461 ctacggtctt tgggccgtcg aggagttgga gagtgggcgc tttgtcggcg atgtcgggct
     5521 gttcgaaggg cggcgcggcc tgggcgagcg gttcgacagc gcgccggaag ccggctgggt
     5581 gctggcgcct ctggggcatg gcaagggtta tgcccgagaa gcgatgaatg cggcgctgcg
     5641 ctggggcgaa tcggagcatc gctggccgcg cactgtgtgc atgatcgatc ccgagaacgg
     5701 gccgtcgctg cgcaccgccg aggcgctcgg ctatcggcgt ttcgaccggc agccgtacaa
     5761 gggcaaggac atcctgctgc tggagcggct tagcgtttga ttttattcag acttcaccgc
     5821 ccattaaccg aatctctaca cctctcccac aatcctcgcg cgcgacattc gggcctgggt
     5881 cgcgctggtg cggccctgca cattttcggg gatagtcatg gggaagatcg ggaagggatt
     5941 ggccgcgctt gccgcggcag cgctgctggc gggatctgcg caggcgggct gctggacgga
     6001 tgcggcctat aaggcggcgc aggtccgcga gctcgataca atgctgatgg tgcaggcgct
     6061 gcgctgccgc aagacggcgg cgagcttcgt cggcgagtac aaccgattcg tcgaggtcag
     6121 ccgccccgcc ctgatccagg ccaatgccga gctgaagacg catttcggcg gactcaatgc
     6181 ctacgacaat tacatgacca ccgtggccaa ccgctacggt gcaggaagcg agggactcgg
     6241 ttgcagcgac gtcgcttcg
//
LOCUS       DASQVK010000176         5618 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_106317,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000176 DASQVK010000000
VERSION     DASQVK010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5618
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106317"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            162..1622
                     /locus_tag="VE567_03735"
     CDS             162..1622
                     /locus_tag="VE567_03735"
                     /EC_number="2.7.8.31"
                     /inference="COORDINATES: protein motif:HMM:TIGR03023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-phosphate glucose
                     phosphotransferase"
                     /protein_id="HYZ47985.1"
                     /translation="MNQDTEAATPASATASRSPVLLDLAILLLRGAEMISVAVTAWIA
                     AALALDVIPVGMAQSYSNAALIAALFYAALAEVTGCYDIDTRFSARTGWARVMTAWLS
                     TGMFLMTLGFLLKVSDEFSRGWAVAWFLLGGAALLLIRAGGTAWMHRLKQRGVFNHRV
                     AIFGAGSQGDRLAKYILGNEKLTIDLVGFFDDRLPERLPEREVRLPLYGNLTDLIGHI
                     RRGVIDQVIVALPWSAEKRLQQVVAELAITPVRIRLAPDLATFAFAQRPVVLLGDLPV
                     MTLFERPISGLDQIVKKVEDLALAALALVILSPLFAVVALAIKLDSPGPVFFRQDREG
                     FNNQRFRIWKFRSMRVEQCEADGITQARKDDDRITRVGRILRRTSIDEVPQLLNVLAG
                     EMSLVGPRPHAPSTKAGDRVFSEVVAHYAARHKVKPGMTGWAQVHGWRGETDTEEKLL
                     KRLEHDLYYIENWSVLLDIYILVRTVAIVAFQRTAY"
     gene            1962..3209
                     /locus_tag="VE567_03740"
     CDS             1962..3209
                     /locus_tag="VE567_03740"
                     /inference="COORDINATES: protein motif:HMM:NF016906.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HYZ47986.1"
                     /translation="MTVYNVSNSTQLNAALGRAAGGDTILLAGGDYGSAVISNKNFGT
                     AVTIKSASSTFKAHFDYVQVSGSRNISLQALDVGHARAPGETDNTQMMRVQSSNGIQM
                     AGLSIHGSLDNNPANDGLGLMVTGSSNVQLLGSSFRELSHGAFFDRNSNVTIASNSFQ
                     TIRSDGIDFGRINNVVVDKNSFTDFHPIRGDHADAIQFWLVNATAGSSNITITNNTIM
                     QGSGLGTQGIFLSDPSRYSYSNVLIQNNLIYGNDMYHGIYVNGGRGVQILGNSTLSNG
                     TDAKQLWIDLQAGTGFTVKDNVTDNILVQHGATGVTLSHNLNLAHDPAARGMFPNLSA
                     PTAAKDLIIAGYGYHVANTTASAASTGTIHSSPHTATGTQVSQTAIADATTPNGTAHL
                     APADYPPSHYSGPTFYDHFVPLA"
     gene            complement(3213..4805)
                     /locus_tag="VE567_03745"
     CDS             complement(3213..4805)
                     /locus_tag="VE567_03745"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cisplatin damage response ATP-dependent DNA
                     ligase"
                     /protein_id="HYZ47987.1"
                     /translation="MHAFATLLERLVYTRSRNAKLKLIGDYLRATPDPDRGWALAALT
                     GDLDFPSVKPALIRALVEQRVDPVLFWLSRDYVGDTAETVSLIWPRPDHPPAVPLDLS
                     LGAVVERFRHVSRSDAPTVLAAHLDAMTPEERFALLKMATGALRVGVTARLAKTALAL
                     AFDLDVEAVEEVWHGIRPPYPTLFAWAEGKGVQPRAEALPVFRPFMLAHPLEDLRLDM
                     ADYAAEWKWDGIRVQLVHAGGETRLYSRAGDDITRGFPEIAEAFRTPGVLDGELMVRG
                     EAQGAEEHGGAAASFNALQQRLNRKAVTAKMLTEYPAFVRLYDVLFDGAEDLRDRPWT
                     ERRTRLEAFAGRLDPERFDVSALIEAPDFTTLQAIRASARDASIEGVMLKRRDSLYVA
                     GRRVGLWYKWKRDPLTADCVVMYAQRGNGRRSSYYSDFTFGCWTKEGELLPVGKAYSG
                     ITDEELKWLDRWVRNHTVQRFGPVREVEKSLVFEVAFDSIHASGRHKSGVAMRFPRIA
                     RIRIDKPAAEADRLETLKRLVT"
     gene            complement(5121..>5618)
                     /locus_tag="VE567_03750"
     CDS             complement(5121..>5618)
                     /locus_tag="VE567_03750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HYZ47988.1"
                     /translation="DGTRAFIGGRPTFGTLIALLVGGRPVLGVIDQPVAGERWIGAAG
                     MPTLLNGAPAKTRRCADLSAALFATTAPWFCGPFAALREASGDTLLGGDCYNYALLAS
                     GHLDLVVEDGLKLHDFAALVPVVEGAGGRMTDWSGAPLGPHSDGRVVAAGDPALFDQV
                     LPLLP"
BASE COUNT         1069 a         1809 c         1743 g          997 t
ORIGIN      
        1 gccggttcac cgcggatttg atcgcagcag tgccaccggc ggtccgcccc gccttgatca
       61 cgaccgcaag ggcgcgccag ttggccgggg cgaatctcgc ctgaccgacc gctggggaaa
      121 gccgagccgg aagaccgatg ctgcaggaaa caagaataca ggtgaaccag gacactgagg
      181 ccgcaacacc cgcgtccgcg acagcgtcgc gctcgccggt cttgctggat ctggcgatcc
      241 tgctgctgcg cggcgcggaa atgatcagcg tcgccgtgac ggcctggatc gcggcagcgc
      301 tggcgctgga cgtcatccca gtcggaatgg cgcaatccta tagcaacgcc gcgctgatcg
      361 ccgccttgtt ctatgcggcc ctggccgaag ttacgggctg ttacgacatc gacacgcgct
      421 tttccgcacg caccggctgg gcgcgcgtga tgaccgcatg gttgtcgacc ggcatgttct
      481 tgatgactct tggctttctg ctcaaagtgt cggacgaatt ctcgcgcggc tgggcggttg
      541 cttggttcct gctgggcggc gcggcgctat tgctgatccg cgccggcggc acggcctgga
      601 tgcatcgcct gaagcaacgc ggcgtgttca atcatcgcgt cgccattttc ggggcgggct
      661 ctcaaggcga tcggctcgcc aaatatattc tcggcaacga gaaactaacg atcgacctgg
      721 tcggattttt cgacgaccga ctgccagagc gcctgcccga gcgcgaggtg cggttgccgc
      781 tctacggcaa tttgaccgat ctgatcgggc atatccgtcg aggcgtgatc gatcaggtca
      841 tcgtggcgtt accatggtcg gccgagaagc ggctgcagca ggtcgtggcg gaattggcga
      901 tcacgccggt ccgcattcgc ttggcgcctg acctggcgac cttcgcgttt gcgcagcgac
      961 cggttgtgct gctcggcgac ctgccggtga tgacgctgtt cgagcgcccg atttccggcc
     1021 tcgatcagat cgtcaagaag gtggaggacc tcgcgctcgc cgcactggcg ctggtcatct
     1081 tgtcgcccct gtttgccgtc gtcgcgctcg cgatcaagct ggacagcccc gggccggttt
     1141 ttttccgtca ggaccgcgaa ggctttaaca atcagcgctt ccggatctgg aaattccggt
     1201 cgatgcgggt ggagcaatgc gaagccgacg gcatcactca ggcgcgcaag gacgacgacc
     1261 gaatcactcg tgtcggccgc atcctgcggc gcaccagcat cgatgaggtg ccgcagttac
     1321 tcaacgtact cgcgggcgag atgtcgctcg tcggtcctcg cccgcacgcg ccttcgacca
     1381 aggccggcga ccgcgtcttt tccgaagtgg tcgcccatta tgcggcacgg cacaaagtga
     1441 agcctggcat gacgggatgg gcccaggttc atggctggcg cggcgagaca gataccgaag
     1501 aaaagctgct caagcggctc gagcacgacc tctattatat cgagaattgg tcggtgctcc
     1561 tcgacattta catccttgtc cgtacggtcg ctatcgttgc cttccagcgc acggcctatt
     1621 gagggcctgt tccgcagccg attcacggct tgccgcaggc atgctgcagc ctatcgctag
     1681 ggcgtaaaaa acttccacat ttgtctctaa tcgagacacc gaacgtcgtg cggggcgacg
     1741 taaaacaaaa aatcgacatc gcggccaaaa tccagcgtgc cttcggcgcg atgggcttcg
     1801 cttggccttc gatcgagggg aaattctgag ctgaagaaaa ggggcgatta gccgccggcg
     1861 aaagccgaaa gcataaattc cgttcaacca ttagcgcggg gccggcctgg tcgcgagcac
     1921 gatagtgttc gcgcgctgcg ttgcgccctc cggggatcaa tatgactgtc tataacgtat
     1981 ccaattccac ccagcttaat gccgcgctcg gccgggctgc cggcggcgac acgattctcc
     2041 ttgccggggg cgattacggc tcagccgtga tctccaacaa gaatttcggg accgccgtca
     2101 caattaaatc cgcttcttcg accttcaaag cgcatttcga ctatgtgcag gtcagcgggt
     2161 ccagaaatat cagcttgcag gcgctggacg tggggcatgc ccgagccccg ggcgaaacgg
     2221 acaacaccca gatgatgcgc gtgcagagct cgaacggaat ccagatggcc gggctttcga
     2281 tccatggctc gctggataac aaccccgcca atgacgggct gggcctgatg gtcaccggat
     2341 caagcaacgt ccagctgctg ggctcgtctt tccgcgagct ttcccacggc gccttcttcg
     2401 ataggaacag caacgtcacg attgcgtcga acagcttcca aacgatccgg tcggacggaa
     2461 tcgattttgg ccggataaat aatgtcgtcg tagacaagaa cagcttcacg gatttccatc
     2521 cgattcgtgg cgatcatgct gatgcaattc aattctggct ggtgaacgcc accgctggat
     2581 catccaatat cacgattacg aacaacacca tcatgcaggg atccggtttg ggtacgcagg
     2641 gcatcttcct ttccgacccg tcccgctaca gctactcgaa cgtccttatt caaaacaacc
     2701 tgatctacgg taacgacatg tatcacggca tctatgtaaa tggcggcagg ggggtgcaga
     2761 tcttgggcaa ttcgacgctg tcgaatggca ctgacgccaa gcaactctgg atcgatttgc
     2821 aggcgggtac cggcttcacc gtgaaggaca atgtaaccga caatatactg gtgcagcacg
     2881 gcgcgacggg cgtgacgctc agccacaatc tcaacctggc gcatgatccg gccgctcgcg
     2941 ggatgtttcc caatctcagt gcgccgaccg cggccaagga cctgatcatc gctggctatg
     3001 gctatcatgt ggcgaataca acggccagcg cggcgagcac gggcacaatc catagcagcc
     3061 cgcacactgc gacgggcacc caggtctcgc agaccgcgat agcggacgcc acgacaccta
     3121 acggcacggc ccatctcgcg ccagccgact atccgccctc ccactatagc ggtcccacct
     3181 tctacgacca tttcgtcccc ctggcctgac ggtcaggtca cgaggcgctt cagcgtctcc
     3241 agccggtcgg cttcggccgc cggcttgtcg atgcggatgc gggcgatgcg agggaagcgc
     3301 atcgccacgc cgctcttgtg ccggcccgag gcgtggatcg agtcgaaggc gacctcgaag
     3361 acaagacttt tctcgacctc gcgcacgggc ccgaagcgct ggacggtgtg attgcgcacc
     3421 cagcggtcga gccatttcag ctcctcgtcg gtaatgcccg aataggcctt gccgacgggg
     3481 agcagctcgc cttccttcgt ccagcagccg aaagtgaagt ccgaataata ggacgagcgc
     3541 cggccattgc cgcgctgcgc atacatgacc acgcaatcgg cggtcagcgg atcgcgcttc
     3601 catttatacc acaggccaac gcgacgcccg gcgacataga ggctgtcgcg gcgcttcagc
     3661 atgacacctt cgatcgaagc gtcgcgggcg ctggcgcgga tcgcctgcaa cgtcgtaaag
     3721 tccggcgcct cgatgagcgc tgagacgtcg aaccgctccg gatcgagcct gcccgcaaag
     3781 gcttcgagac gcgtgcgccg ctcggtccag ggccgatcgc gcagatcctc cgcaccatcg
     3841 aaaaggacat cgtaaagccg cacgaaggcc gggtattctg tgagcatctt ggccgtcacc
     3901 gccttgcggt tgagccgctg ctggagcgca ttgaagcttg ccgccgcgcc gccatgctcc
     3961 tcggcgccct gggcttcgcc gcgcaccatc agctcgccat cgagcacccc gggcgtgcgg
     4021 aacgcctctg caatctcggg aaagccgcga gtgatgtcgt cgcccgcccg gctataaagt
     4081 cgagtctcgc cgccggcatg gacgagctgg acgcggatgc cgtcccattt ccactccgcc
     4141 gcataatcgg ccatgtcgag ccgcaggtct tccagcggat gggcgagcat gaagggccgg
     4201 aacaccggca gcgcctcggc acggggctgc acgccctttc cttccgccca ggcaaacagg
     4261 gtcgggtaag gcgggcgaat gccgtgccag acttcctcga ccgcctcgac gtcgaggtcg
     4321 aaggcgagag cgagcgcggt cttcgccagc cgcgccgtca cgccgacgcg caaggcaccg
     4381 gtcgccatct tcaggagggc gaaccgctcc tcgggtgtca tggcatcgag atgcgcggca
     4441 agcaccgtgg gcgcgtccga gcgcgacaca tgccggaacc gctcgacgac cgcccccaga
     4501 gacaggtcga gcggcacggc aggcggatgg tcgggccgcg gccagatcag cgatacggtc
     4561 tctgccgtat cgccgacata gtcgcggctg agccagaaca gcaccggatc gactcgctgc
     4621 tcgaccagtg ctcggatcag ggcgggcttg accgacggaa aatcgagatc gccagtgagc
     4681 gccgccagcg cccagccgcg gtccgggtcc ggagtcgcgc gtagatagtc gccaatcagc
     4741 ttcagcttgg cgttgcgcga acgggtatag accagccgtt cgaggagagt ggcgaaggcg
     4801 tgcattccaa agtaaactgc cacccgtgga ccaaagtgcc aatcaaggga cacgcgcgat
     4861 ggtcgacact tcaatgccgg tcgaacagct tgagcacgtc tatcggcggt ggcgcgatac
     4921 ctaaggcgcc tcggcagaat tgtttctgga tctcatgtcg acagctgcca tatgcgatcg
     4981 gtgccgtcgc ccgcggtgcc gaccgatctg gcgctccacc gcacatcgcg ccgaagccgg
     5041 gagctatttg acgcgctcgc ccgcgactga gaaatcgaga tgttcgacag tttaggtttc
     5101 gcgcgtaccg ccgccttgct ttaaggcagc agtggcagca cttggtcgaa tagcgcggga
     5161 tcgcccgccg ccacgacacg gccgtcgctg tgagggccaa gcggcgcgcc cgaccagtcg
     5221 gtcattcgtc cgcccgcccc ttcgaccacc ggaaccaagg ccgcgaaatc gtggagcttc
     5281 agcccgtcct cgaccaccag gtcgagatgg cccgaggcaa gcagtgcgta attatagcaa
     5341 tcgccgccca gcagcgtgtc gccactggct tcgcgcagcg ccgcgaacgg gccgcagaac
     5401 catggcgcgg tggttgcgaa cagggcggcc gacaaatcgg cgcagcgccg cgtcttggcc
     5461 ggcgcgccgt tcagcagcgt cggcatgccg gcagcgccga tccaccgctc gcccgcgacc
     5521 ggctggtcga tcacgcccag caccgggcgg ccgccgacca gcaaggcgat cagcgtgccg
     5581 aaggtggggc gaccgccgat aaaggcgcgg gttccgtc
//
LOCUS       DASQVK010000177         2552 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_200807,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000177 DASQVK010000000
VERSION     DASQVK010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2552)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2552)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2552
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200807"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(42..503)
                     /gene="ssb"
                     /locus_tag="VE567_03755"
     CDS             complement(42..503)
                     /gene="ssb"
                     /locus_tag="VE567_03755"
                     /inference="COORDINATES: protein motif:HMM:TIGR00621.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HYZ47989.1"
                     /translation="MAGSVNKVILVGNLGADPESRSMSTGGEVVNLRIATSETWSDRQ
                     SGDRQERTEWHRVVIFNENLGRVAKQYLRKGSKVYLEGQLQTRKWTDQQGQERYSTEV
                     VLQRFRGELVLLDRREGAGGGDDFGGGAPTRTQSRPQPAAFDTDLDDDVPF"
     gene            complement(534..2390)
                     /locus_tag="VE567_03760"
     CDS             complement(534..2390)
                     /locus_tag="VE567_03760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0015093 - ferrous iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transporter B"
                     /protein_id="HYZ47990.1"
                     /translation="MNPAPLVALVGNPNAGKSSLFNALTGARQKVGNYPGVTVERHSG
                     RFALPDGRPVELVDLPGAYSLEPASPDEAVTRDVILGQQAGERLPAALIVVVDASNLD
                     NHLRFAMQLIGLGLPIVVALNMVDLAKRDGLEIDTGILARELGVPVIETVAVRKRGLE
                     ELKAALAQAVGDGTMKLRAGPGFVHEDLATMQRRARALAVKAIVSESPARRVTHTLDA
                     VALHPVVGPAFLAAILFVMFQAVFSWSQAPIGWIESGFDALSAWVNATLPQGVLRSLI
                     TEGLLAGVGAVLVFLPQILILFFFILLLEASGYMVRAAFLMDRLMARVGLSGRAFIPL
                     LSSFACAVPGIMATRTIDDPKDRLTTILIAPLMTCSARLPVYTLIIAAFVPNRAVMPG
                     VGLQGLVLFGLYVAGVLGAFAAALFLRRTVTKGRGAGFMMEMPKYQWPRWQDIGLGLV
                     TRTQIFLKRAGTIILFTTVLLWALASFPKAPAGVKQSEYSVAGRIASGVETVVRPIGF
                     NHDIALALIPAMAAREIAVSAIATVYAIDAGDDPAASRQLETRLSHAWPLPTALAFLA
                     WFVFAPQCISTIAVTRRETNGWKWPGFMVAYLFTIAYVAAGFTYWTATALGL"
     gene            complement(2387..>2552)
                     /locus_tag="VE567_03765"
     CDS             complement(2387..>2552)
                     /locus_tag="VE567_03765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046914 - transition metal ion binding
                     [Evidence IEA];
                     GO_process: GO:0006811 - monoatomic ion transport
                     [Evidence IEA];
                     GO_process: GO:0055072 - obsolete iron ion homeostasis
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FeoA family protein"
                     /protein_id="HYZ47991.1"
                     /translation="EAKRLRELGFDEGVAIEALHRGSLFARDPIAFRVGRMTVAIRRA
                     QARAIRVSLA"
BASE COUNT          460 a          852 c          856 g          384 t
ORIGIN      
        1 agcccgttcg cagtgctagc caagctccgg aaagacgaac cctagaaggg gacgtcgtcg
       61 tcgaggtcag tgtcaaacgc cgccggctgc gggcgcgact gggtacgcgt aggagctccg
      121 cccccgaaat cgtcgccgcc ccctgcgcct tcgcgccgat cgagcagcac cagctcgccg
      181 cgaaagcgct gcagcaccac ttcggtcgaa tagcgttcct ggccctgctg gtcggtccat
      241 ttgcgggtct ggagctggcc ttcgagatag actttcgagc ctttgcgcag atattgcttc
      301 gccacgcggc cgagattttc gttgaagatc acgacccggt gccattcggt ccgctcctgc
      361 cggtcgccgg actggcgatc gctccaggtt tcggacgtgg cgatccgcag attcaccact
      421 tcaccgcccg tgctcatcga ccgcgactcc ggatcggcgc cgagattgcc gaccagaatc
      481 accttgttca cgcttcctgc cacgtcctgc tcctgaaatg ggttggcctt accttagagg
      541 ccgagcgcgg tggcggtcca gtaggtgaag cccgccgcga cataggcgat cgtgaacaga
      601 taggcgacca tgaagcccgg ccatttccag ccattggttt ctcgccgcgt caccgcgatc
      661 gtggaaatgc attgaggcgc gaagacgaac cacgcgagga aggcgagcgc ggtggggagc
      721 ggccaagcgt ggctgaggcg ggtttcgagc tgccggctgg cggcgggatc gtcgccggcg
      781 tcgatcgcat agacggtcgc gatcgccgag accgcgatct cgcgcgccgc catggccggg
      841 atcagcgcga gcgcaatgtc gtgattgaag ccgatcgggc gcacgaccgt ctcgacgccg
      901 ctcgcgatcc ggccggcgac cgaatattcg ctctgcttca cgcccgccgg cgccttgggg
      961 aaagacgcca gcgcccagag cagcacggtc gtgaacagga tgatggtgcc ggcgcgcttc
     1021 aggaaaatct gcgtgcgcgt gaccagcccc aggccgatat cctgccatcg cggccattga
     1081 tatttgggca tttccatcat gaagccggcg ccgcgccctt tggtcaccgt gcgccgcagg
     1141 aacagcgcgg cggcgaaggc gccgagcacg ccggccacat acaggccgaa cagcaccagc
     1201 ccctgcagcc cgacgcccgg catcaccgcc cggttgggaa cgaatgcggc gatgatcagc
     1261 gtgtaaaccg gcagccgcgc ggaacaggtc atcagcggcg cgatcaggat ggtcgtcagc
     1321 cgatctttcg gatcgtcgat cgtgcgggtc gccatgattc ccggcaccgc acaggcgaag
     1381 gaggacaaga gcgggatgaa agcccggccg gaaaggccga cgcgggccat cagccggtcc
     1441 atcaggaagg cggcgcggac catgtatccg ctcgcttcca gcagcaggat gaagaagaaa
     1501 aggatcagga tctgcggcag gaacaccagc accgcgccga cgcctgcgag caggccttcg
     1561 gtgatcagcg agcgcagcac gccctggggc aaggtcgcgt tcacccaggc ggagagcgcg
     1621 tcgaagccgc tttcgatcca gccgatcggc gcctgcgacc aggaaaacac cgcctggaac
     1681 atcacgaaca ggattgcagc caggaacgcc gggccgacga ccgggtggag cgccactgca
     1741 tcgagcgtgt gggtgacgcg gcgcgccggg ctttctgaga cgatcgcctt gaccgcgagc
     1801 gcacgggcgc ggcgctgcat cgtcgccagg tcttcatgaa cgaagccggg gccggcacgg
     1861 agcttcatcg tgccgtcgcc gaccgcctgc gccagcgcgg ccttgagctc ctcgagaccg
     1921 cgcttgcgca ccgccacggt ctcgatgacc ggcacgccca gctcccgcgc gagaatgccg
     1981 gtatcgatct ccagcccatc gcgcttggcg agatcgacca tgttgagcgc gacgacgatc
     2041 ggcaagccga ggccgatcag ctgcatcgcg aaacgcaaat gattgtccag attggaggcg
     2101 tcgacgacga cgatcagcgc ggcgggcagg cgctcgcccg cttgctggcc gagaatcacg
     2161 tcgcgcgtga ccgcttcgtc ggggctcgcc ggctccaggc tataggctcc gggcaggtcg
     2221 accagctcga ccggcctgcc atcgggcagc gcaaagcggc ccgaatgccg ctcgacggtc
     2281 acgccaggat aattgccgac cttctggcgc gcgccggtca gcgcattgaa cagggagctc
     2341 ttgccggcat tggggttgcc gaccaatgcg accagagggg ccgggttcat gccagcgaga
     2401 cgcggatcgc gcgggcctgg gcgcggcgga tcgcgacggt catccggccg acccggaacg
     2461 cgatcgggtc gcgcgcgaac aagctgccgc gatgcagcgc ctcgatcgcg acgccttcgt
     2521 cgaagccgag ctcgcgcagc cgcttcgctt cg
//
LOCUS       DASQVK010000178         2175 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_11148, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000178 DASQVK010000000
VERSION     DASQVK010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2175
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11148"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..557
                     /locus_tag="VE567_03770"
     CDS             <1..557
                     /locus_tag="VE567_03770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYZ47992.1"
                     /translation="GAPNPTFNLHTEDTANAPGTSKIRGVEVDVTARPVQNLTIGGSY
                     AYTYTNIPATLNPQTNILTQVFVVYTPDNAASAFVDYELPVGGEGAAVRLHLDANYAS
                     SAYSFQNEAVKADSSFIVNGRLALADVSMNSSGAKATFSLWTRNLLNETHIYRRSAAN
                     AAVLGDYANFNPPRTFGGDVTIKF"
     gene            complement(622..2046)
                     /locus_tag="VE567_03775"
     CDS             complement(622..2046)
                     /locus_tag="VE567_03775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010183366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYZ47993.1"
                     /translation="MMSYLKHYIDGAWVESEGGTRHLVINPATEEPCTEITLGSKADV
                     DKAVAAARRAFETFSQTSVDERAALIERIIAEYKKRIPDIARAISIEMGAPMGLATGA
                     QAPAGLGHFIYTLKALREFPFEESVGSAKVLHEPIGVVAMITPWNWPINQIAAKIAPA
                     LAAGNAMILKPSEETPASAAILAEVLHEAGVPAGVFNLVQGDGPTVGAALSAHPGVDM
                     VSFTGSTRAGTAIAAAAAPTVKRVHQELGGKAPNLVLEGADLNAVLPPTVMGVLANTG
                     QSCIAPTRILVHQSQVDDATAFIKGMMEATKVGDPQAEGPHIGPVVNKTQWEKIQGLI
                     QSAIDEGATLVTGGTGLPEGINRGYYIRPTLFRDVTPEMRIAQEEVFGPVATVMTYRD
                     EDEGVRIANDTPYGLSATISGEPAKAAKVARRLRAGLVTINSWSPDPGAPFGGYKQSG
                     NGREYGKWGLADFMEVKSVIGEPA"
BASE COUNT          366 a          701 c          699 g          409 t
ORIGIN      
        1 acggcgcgcc caatccgact tttaaccttc acaccgaaga cacggccaat gcgccgggta
       61 cgtctaagat ccgtggcgtc gaggtggacg tgactgctcg gccggttcag aacctgacga
      121 tcggcggttc gtacgcctac acctacacga acattccggc gacattgaat ccgcagacga
      181 atatcctgac tcaggtcttc gtggtgtaca cgccggacaa cgccgcttcg gcctttgtcg
      241 actatgagct gccggtgggc ggtgaaggcg cggccgttcg cctccatctg gacgcaaatt
      301 atgcgagcag cgcgtacagc ttccagaacg aggcggtgaa ggcggacagc agcttcatcg
      361 tgaacggccg cctcgcgctt gccgatgtct cgatgaatag cagcggggcg aaggcaacct
      421 tctcgctatg gacgcgcaac ctactcaacg agacgcacat ctatcgccgg tcggctgcca
      481 acgccgccgt gctcggcgac tatgccaact tcaacccgcc gcggacgttc ggcggcgacg
      541 tgacgatcaa gttctgatca gccgccggag cggcgccccg cgtggcgccg ctccggcact
      601 taaatgctgc gagcgaacag gtcaggccgg ctcaccgatt acggacttca cttccatgaa
      661 gtcggcgagc ccccatttgc catattcgcg cccattgccc gattgcttgt agccaccgaa
      721 cggcgcgccc ggatcgggcg accagctgtt gatcgtgacc agcccggcgc ggagccggcg
      781 cgccaccttg gcggccttgg ccggctcgcc tgagattgtc gcggaaaggc cataaggcgt
      841 gtcgttggcg atgcggacgc cttcgtcttc atcgcgatag gtcatgaccg tcgcgacggg
      901 tccgaacact tcttcctgcg cgatgcgcat ctcgggcgtg acgtcgcgga acagggtcgg
      961 ccggatataa tagccgcgat tgatcccttc gggcagcccg gtgccgcccg tgaccaaagt
     1021 cgcgccttcg tcgatcgcgc tctggatcag gccctggatc ttctcccact gggtcttgtt
     1081 gacgacgggg ccgatatgcg ggccctcggc ttgcggatcg ccgaccttcg tcgcttccat
     1141 catgcccttg atgaaggcgg tggcatcatc gacttggctc tgatgcacga gaatgcgggt
     1201 gggagcgatg cagctctggc cggtattggc gagcacgccc atcacggtcg gcggcagcac
     1261 tgcgttcagg tcggcgcctt cgagcacgag attgggggcc ttgccgccca gctcctgatg
     1321 cacgcgcttg accgtgggtg cggccgccgc tgcgatcgca gtgccggcgc gcgtggaacc
     1381 ggtgaagctc accatatcca cgccggggtg cgccgagagc gcggcgccga cggtggggcc
     1441 atcaccctgc accagattga agacgccggc gggcacgcct gcttcgtgca gcacctcggc
     1501 caggatcgcc gcggaagcgg gcgtttcctc ggaaggcttc aggatcatcg cattgcccgc
     1561 ggcgagcgcg ggggcgattt tcgccgcgat ctggttgatc ggccagttcc agggcgtaat
     1621 catcgcgacc acgccgatcg gctcatggag caccttggcc gagccgacgc tttcctcgaa
     1681 cgggaattcg cgcagcgcct tcaaggtgta gatgaaatgg ccgaggccgg cgggcgcctg
     1741 tgcgcccgtc gcaaggccca tcggggcacc catctcgatc gagatcgcgc gggcaatatc
     1801 cggtatgcgc ttcttatatt cggcgatgat ccgctcgata agcgccgcgc gttcgtcgac
     1861 acttgtctgg ctgaatgttt cgaaggcccg gcgggcggcc gcgacagcct tgtcgacatc
     1921 cgccttcgag ccgagcgtga tctcagtgca gggctcctcg gtggccgggt tgatgaccag
     1981 atggcgcgtg ccgccttcgc tctcgaccca ggcgccgtcg atataatgtt tcagatagct
     2041 catcatgatc acgctctccc gactctggtt tgcgaccaga ttgcgtttct gaacgcaact
     2101 ggcaaggggg agttatcggg agccgcccgg acaatggcgc gccctgtcct ccggaagggc
     2161 gtcgccgcga tatgg
//
LOCUS       DASQVK010000179         5878 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_137466,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000179 DASQVK010000000
VERSION     DASQVK010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5878
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137466"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            267..443
                     /gene="yacG"
                     /locus_tag="VE567_03780"
     CDS             267..443
                     /gene="yacG"
                     /locus_tag="VE567_03780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004208775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HYZ47994.1"
                     /translation="MAQKSADQCPLCGRPADPAHTPFCGRGCKDRDLLNWLGDGYRAP
                     GPPAQGEKPLDSEL"
     gene            485..560
                     /locus_tag="VE567_03785"
     tRNA            485..560
                     /locus_tag="VE567_03785"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:518..520,aa:Phe,seq:gaa)
     gene            complement(889..1902)
                     /locus_tag="VE567_03790"
     CDS             complement(889..1902)
                     /locus_tag="VE567_03790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HYZ47995.1"
                     /translation="MRMLKFALLSGSLAALAAAASASPYRQVAVTPVPAMPEGDWDQL
                     VADETHNRLYVSAEDGAAMDVFDLTTGALLQAGGPVGSPHKVALDAAAQHLLVADGQD
                     GTVKVLTPDLRLVKAIPVGARPDTGVLDAEARIFYVSSRNGAGTAPDSIVSAISLDSL
                     AVVKTFAVPATTLKGLVQDKPGHRLFVSMRDKDRIGVIALDTGEVTTWAAEGLKKSVP
                     LAFDPANQRLYAGSREPGRLTVFDATTGKVVQLLPLTETADSMTLDHGGKRLYVSGDT
                     GMSRYAIGKGGVVRFLETDPGVVGKTSLYVAGLHRLYVMRPRTKDMVAALQVFSVTAG
                     REE"
     gene            complement(1916..4561)
                     /locus_tag="VE567_03795"
     CDS             complement(1916..4561)
                     /locus_tag="VE567_03795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008829787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYZ47996.1"
                     /translation="MLLRNRFETCPARTFILLALLCSAATPALAAAESDDGQQREGQQ
                     GDIVVTGRAAASRARQEDAPNIIQTISQEEARGLPNLNAGEAIARLPGAALSVDTGQG
                     RWVNIRGLDSDLTSTTYGGVHLPPTNPVTPQNGGRAFAFDAFPTGLIGSLTITKTNRP
                     DMDAEALGGTIEITPKALAPGEDHFIEARLGSGEQFSRHTAIVDVSASAGIRFGGKDG
                     SGPFSIVGSFSYYKDALGTDDRRGTFIDKPGVPDLALSNFTQAFYRFHRTTKGGAIEA
                     AYEPDADTRLYARYVRSGYDEQVDRDRFTIKTTGTSLQNPDGSITSPVKQFDKTLRDM
                     LEQVSLDVVEVGGRNKIGAMKLEYHASYAQGRDYRPYDTIPTFSTTPSGATFTYNQAN
                     ASFPTYTVGGANPYDPTLYTLKNVTNNTQLYRTREWSGGIDATAPTHLIGGFGEQIKA
                     GLAFRARTNTHAFHPYTSTAVPTVNLAAAAPGANILYYASHYANGPNISLDYIRHLFA
                     GGTGAGFATNDAANLFAGGAVQQDNKEDVYAGYVQGETSFGDLHLLAGLRIEHTEARY
                     SGNTSVPTGVAGSTPERGGQTVTLNGSTLIPVSSTASYTNFFPTIQARYALRENLVLR
                     AAYSTAIARPGFNQIDPAATIDAANNVVTAGNPNLKPITSNSFDLSIERYLPYGGIVS
                     IGLFDKEMSNYIFGRTVLGSITDPVIASALGPQSTPTQLVTYSNIPHATARGFEVNYD
                     QHLSFLPGPFANFGVSGNYTFVDSSAEIRPGESAGLPSTSRHNYNAALYWDDGRLNLR
                     AAVSYVGRSLLFVGSRRALDQYTEHRFSLDVGGSYAVTRNASVYFAGRNLLNTAHTLT
                     EGAPNRVIQREMFGASILGGVNFKF"
     gene            4793..5461
                     /locus_tag="VE567_03800"
     CDS             4793..5461
                     /locus_tag="VE567_03800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008829788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYZ47997.1"
                     /translation="MRLCLIEDDVMLGHSIRAGLRPYGYSVDWIQDGDQAEDALRANR
                     YWAVLLDLGLPNKQGLEVLAEMRSRGDDTPVIILSARDAVRDRISGLDGGADDYLPKP
                     FDLDELAARIRAVRRRREGRQVALMRYGQICFDPAGKTLEYRGRAVPLRSREIAFLAA
                     FMEDPGKVLSRDQLIDRVYGWETDIESNAVEFHIHALRRKLSPGAIRNIRGIGYRLVD
                     ERED"
     gene            5458..>5878
                     /locus_tag="VE567_03805"
     CDS             5458..>5878
                     /locus_tag="VE567_03805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ47998.1"
                     /translation="MTRVMSIKRTLLFWLLVALAAISGTFILGTYVLERISIDRFQDQ
                     RLQQIALDVPESLKPADLHLINIKLIHGPDDFVLQIWKGNDPVYRSHTDLQLPRFVGQ
                     GFSVHVVNGERWKTFGRRMGDYTIQVAQSLDARDALAE"
BASE COUNT         1065 a         1822 c         1904 g         1087 t
ORIGIN      
        1 gcggggccgg aaagtccggg aaaagcgctg ggcggcggcg cttcggccga cttcatcgcc
       61 agctcgacgc catgctccat catcagctgc tgggcgcggc cgagcaccca ggtccagcgc
      121 tgcaattcgc ccagcgtcgg aattgcggcc ggcgggccat cggcggtctg cgtcgccata
      181 atcctctcct cctgcctcta cctaacgtgc aagaccggat tcgtcatgcg cttgtgcgca
      241 aggaggtgcc gccccatttt caggcgatgg cacagaaatc cgccgatcaa tgccccttgt
      301 gcggccgccc cgccgaccct gcgcacacgc ccttctgcgg ccgcggctgc aaggaccgcg
      361 atctgctcaa ctggctcggc gatggctatc gcgcgcccgg gccgccggcg cagggcgaga
      421 agccactgga cagcgagctt tagccgccgc tataggccgc gcctcgctcg cttcgcagcg
      481 ccgtgcccag gtagctcagt tggtagagca tgcgactgaa aatcgcagtg tcggtggttc
      541 gattccgccc ctgggcacca tcaccctgtt ccagggctct ccagaatctc tcgtagcagc
      601 ccagaaatgg tggaatccgc caggcagagc gacaaggact ataaatagct gacgaccagg
      661 ggcgttgcct gctcgtcacc acatccggcg gaaagcactg gcgcgtcaaa tatcggttcg
      721 acggcaagga gaagaatctc tcctcggccg ctatcccgac gtgccgctcg cggccgcact
      781 caggcaggcg cgtgaggctg agaagcaggc ccgcgcatga ctggatgcgc gggacgatcc
      841 gatcggctgc aacggaactc catccgccgc gctgaccgcg ccggcaagct actcctcgcg
      901 tccggcggtg acagagaaga cctgcagcgc cgctaccatg tctttcgtcc tggggcgcat
      961 cacatagagc cgatgcagcc ccgcgacgta gagcgaggtc ttgccgacca cgcccgggtc
     1021 cgtttcgagg aagcgtacaa cgccgccctt gccgatcgca tagcggctca tccccgtatc
     1081 gcccgaaaca tagagccttt tgccgccatg atcgagcgtc atgctgtcgg ccgtttcggt
     1141 gagcggcagc agctgcacca ccttacccgt cgtggcatcg aaaacagtca ggcgcccagg
     1201 ctcacgcgag ccggcataga ggcgctggtt tgcagggtcg aaggcgagcg gaacactctt
     1261 tttgaggccc tcggccgccc aagtcgtgac ctcgcccgtg tcgagggcga tcaccccgat
     1321 ccgatccttg tcccgcatgc tcacgaacag gcggtggcct ggcttgtcct gcaccaggcc
     1381 cttgagcgtc gtcgcgggca cggcgaacgt cttcaccacc gcgagcgagt cgagcgatat
     1441 cgcgctgacg atcgaatccg gcgcggtccc tgcgccgttg cggctgctga cgtagaagat
     1501 tcgcgcctcg gcgtcgagca cgccggtgtc cggcctggcg ccgaccggga tagcctttac
     1561 gaggcgcaga tcgggggtga gcaccttgac cgtcccatcc tgcccatcgg cgacgagcag
     1621 atgctgcgcg gccgcgtcga gcgccacttt gtggggcgat ccgactgggc cgcccgcctg
     1681 caggagcgcc ccagtcgtca ggtcgaacac gtccatcgcg gcgccatcct cggccgagac
     1741 gtacaggcgg ttgtgcgtct catcggcgac gagctggtcc caatcgccct ccggcattgc
     1801 cgggaccggc gtgaccgcca cctgccgata gggcgaggcc gacgcagcag ccgccaaagc
     1861 ggccaggctg ccggacagca gcgcgaactt gagcattctc atgagagttt tcccgtcaga
     1921 acttgaagtt gacgccgccg agaatcgatg ccccgaacat ctcgcgctgg atgacgcggt
     1981 tcggcgcgcc ttcggtgagc gtatgcgcgg tgttgaggag gttgcggcca gcaaaataga
     2041 ccgaggcatt gcgcgtgacc gcgtagctgc cgccaacgtc caacgagaaa cggtgttcgg
     2101 tatattgatc gagagcgcgc cgggagccga cgaaaagcag gctgcggccg acatagctca
     2161 ccgccgcgcg caggttcagg cgcccgtcgt cccaatagag cgcagcattg taattgtgcc
     2221 gcgaggtcga aggcagcccg gccgattcac ccggccggat ttctgctgac gagtccacga
     2281 aggtatagtt gcccgaaacg ccgaaattgg cgaacggccc cggcaggaac gacagatgct
     2341 ggtcgtagtt gacctcgaag ccgcgcgctg tggcgtgcgg gatattgctg taggtcacaa
     2401 gttgggtcgg cgtgctctgc gggccaaggg cgctcgcgat caccggatcg gtgatgctgc
     2461 ccaggaccgt gcgtccgaaa atataattcg acatttcctt gtcgaacagg ccgatcgaga
     2521 cgatgccgcc atagggcaga tagcgctcga tcgacagatc aaagctgttc gaggtgatcg
     2581 gcttcagatt gggattgccg gcggtgacga cattgttcgc ggcatcgatc gtggccgccg
     2641 gatcgatctg gttgaagccg ggccgcgcaa tcgccgtcga ataggcggcg cgcaggacca
     2701 gattctcgcg caaggcatag cgcgcctgaa tcgtcggaaa gaagtttgtg tagcttgccg
     2761 tcgaggaaac cgggatcagc gtcgagccgt tgagggtgac ggtctgcccg ccccgctcgg
     2821 gcgtcgaccc ggcgacaccg gtcggaacgc tggtgttgcc gctgtagcgc gcctcggtgt
     2881 gctcgatgcg caggccggcg agcaggtgga gatcgccgaa gctggtctcg ccctggacat
     2941 agccggcata cacgtcctcc ttattgtcct gctgcacggc gccgcccgcg aagaggttgg
     3001 ccgcgtcatt cgtggcgaag cccgcgcccg tgccgccggc aaagagatga cgtatatagt
     3061 ccaggctgat gttcggcccg ttggcgtaat ggctggcata atagagaatg ttcgcgcccg
     3121 gcgccgctgc agcgaggttc accgtcggaa cggcggtcga cgtgtaggga tggaaggcgt
     3181 gcgtgttcgt ccgggcccgg aacgccagcc ccgccttgat ctgttcgccg aagccgccga
     3241 tcagatgggt cggtgccgtt gcgtcgatcc cgcccgacca ttcgcgggtg cggtagagct
     3301 gagtgttgtt ggtgacgttt ttcagcgtgt agagcgtcgg gtcgtaaggg ttggcgccac
     3361 ccacggtgta ggtcggaaag ctggcgttcg cctggttata ggtgaacgtc gcaccggacg
     3421 gcgtcgtgct gaaggtcggg atggtgtcat aggggcgata atcgcgtccc tgcgcatagg
     3481 acgcatgata ttcgagcttc atggcgccga tcttgttgcg cccgcccacc tcgaccacgt
     3541 cgaggcttac ttgctcgagc atatcgcgca acgtcttgtc gaactgtttg acgggcgacg
     3601 taatgctgcc gtcgggattc tggagcgacg tgccggtcgt cttgatcgta aaacggtcgc
     3661 gatcgacctg ctcgtcatag cccgagcgca catagcgggc ataaaggcgg gtatcggcgt
     3721 ccggctcata ggccgcctcg atggcacccc ccttggtggt ccggtggaat cggtagaagg
     3781 cctgcgtaaa gttcgacaga gccagatcgg gaacgccggg cttgtcgatg aacgtcccgc
     3841 ggcgatcgtc cgtgcccagt gcatccttat agtaggagaa cgagccgacg atcgaaaagg
     3901 gaccgctgcc gtccttgccg ccgaaacgga tgccggcgct tgccgacaca tcgacaatcg
     3961 cggtgtgtcg cgagaactgc tcgcctgagc ccaaccgcgc ctcgatgaaa tgatcttcgc
     4021 ccggcgccag ggccttcggc gtgatctcga tggtaccgcc cagcgcctcg gcgtccatat
     4081 ccggccggtt ggtcttggtg atggtcagcg aaccgatcag tccggtcgga aaggcatcga
     4141 acgcgaatgc gcggccgcca ttctgcggcg tcaccggatt ggtcggagga aggtggacgc
     4201 cgccataggt cgtgctcgtc aaatccgagt cgaggccgcg gatattcacc cagcgtccct
     4261 ggccggtatc caccgacagc gccgcgccgg gcaaacgcgc gatcgcctcg ccagcattga
     4321 gattgggcag gccgcgcgct tcctcctgcg agatcgtctg aatgatgttc ggcgcatctt
     4381 cctggcgagc gcggctggcg gcggcgcggc cggtgacgac gatgtcgccc tgttggccct
     4441 cgcgctgctg gccatcgtcg ctctcggcgg ctgcgagcgc cggcgtcgcg gcgctgcaca
     4501 gcaaggcaag caggatgaag gttctggccg gacaagtttc gaatctattc cgtaacagca
     4561 ctattgcgcc tcccgggatc agcaaagcgc gcgaacacag ggcgtgttcg cttggatact
     4621 ttgcttgttt ggattgttgc gggcgccaat aggcagcgaa gattatcgct gtattagccg
     4681 ggaagttctc gaaaatataa aggcgatttc ccggaaattc gccaaagtgt cagaaaaatg
     4741 tcataactat gcactcaaag gcttgatcga caggtcctta accgagtcgg tcatgcgcct
     4801 ctgcctcatt gaagatgacg tgatgctggg acacagcatt cgggccggtc ttcggcccta
     4861 tggctattcg gtcgactgga tacaggatgg cgaccaggcg gaagacgcgc ttcgcgccaa
     4921 ccgatattgg gcagtgctgc tcgatcttgg cttgccgaac aagcaaggct tggaggtgct
     4981 cgccgaaatg cggtcgcgcg gagacgacac gcccgtgatc atcctgtccg cccgggacgc
     5041 agtgcgcgat cgcatctcgg ggctggatgg cggagcggac gattatcttc ccaagccgtt
     5101 cgatctggat gagcttgctg cgcgcatccg cgccgtgcgg cgccggcgcg agggcaggca
     5161 agttgccctg atgcgctacg ggcagatctg cttcgatccg gccgggaaga cgctggaata
     5221 tcgcggccgc gccgtaccgc tgcgcagccg cgaaatcgca ttccttgccg cgttcatgga
     5281 agatccgggc aaggtgcttt cccgcgatca gctgatcgac cgggtctatg gctgggagac
     5341 cgacatcgaa agcaacgccg tcgaatttca tattcatgct ctgcggcgca agctctcccc
     5401 aggcgccatc aggaacatcc gcgggatcgg ctaccgcctt gtggacgagc gcgaagattg
     5461 acccgggtga tgtcgatcaa gcggacgttg ctattctggc tcctcgttgc gctcgcggcg
     5521 atcagcggaa cattcatcct cggcacttat gtccttgagc gcatcagtat tgatcgcttc
     5581 caagatcaac gtttgcagca aatcgcgctc gacgtgcccg agtcgctcaa acccgcggat
     5641 ctccacctca tcaatatcaa gctgatccac ggtcccgacg acttcgtgtt gcagatctgg
     5701 aagggcaacg atccggtcta tcgatcccat accgatctcc aactcccgcg cttcgtgggc
     5761 caagggttca gcgtacatgt cgtaaatgga gagcggtgga agacctttgg ccggcgaatg
     5821 ggcgactata cgatccaggt ggcgcagtcg ctggatgctc gcgatgcgct ggcggagg
//
LOCUS       DASQVK010000180         2942 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_232872,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000180 DASQVK010000000
VERSION     DASQVK010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2942)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2942
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232872"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(165..491)
                     /locus_tag="VE567_03810"
     CDS             complement(165..491)
                     /locus_tag="VE567_03810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014077652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYZ47999.1"
                     /translation="MSISDVHDQVFKALASPIRRQILDDLRDQPLTTGTLCAHFPELD
                     RCTVMQHIRVLEEADLIIPVKRGRERWNHLNAVPIQQIHERWIGPHAERAAALLTRLK
                     EDAERS"
     gene            539..991
                     /locus_tag="VE567_03815"
     CDS             539..991
                     /locus_tag="VE567_03815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011540770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HYZ48000.1"
                     /translation="MDLKFRAFAHISKPVEQVFEAVADPDQLSRYFTTGGAKGRLETG
                     ATVTWDFHDFPGAFPVQVIEIVPNARIVLEWKANDGAEQPYNTRVEMTFEPLEAGRTL
                     VAIEESGWRESDAGLKAAFGNCMGWSQMLCALKVWLEHGINLREGMYK"
     gene            complement(993..2120)
                     /locus_tag="VE567_03820"
     CDS             complement(993..2120)
                     /locus_tag="VE567_03820"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HYZ48001.1"
                     /translation="MSSTKTADFLIIGGGVAGLSAGARLARRGKVVLLEAEDAVGYHS
                     SGRSVTFSHYGIGGATVRALTAYSRAFFLNPPAGFDALCKVTPALFIANEAMLPALGE
                     LERITRSLTDAVERLDAAGAAHFCPALRLAPDAVVAAFVHREGLRLDPHALLQGFQRA
                     IRAEGGEIVTGAHVTAIGPQWRVATVAGDIYEAPVLINAAGAWADRMAKLAGVRPLGL
                     SPMRRTVIVFDPPAALDVRDWPFIKTAVDYMYMLPDAGRLLASPVDENPDDPCDAQPD
                     EYDMAVAAHRVTEFTTLEVPRITHRWAGLRTFTADRVPVAGFAPDAEGFFWLAGQGGY
                     GLQTAPAMAEIAEALATGGDWPAGIADVGITPDQIRPGRLF"
     gene            2237..>2942
                     /locus_tag="VE567_03825"
     CDS             2237..>2942
                     /locus_tag="VE567_03825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017668221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacylase"
                     /protein_id="HYZ48002.1"
                     /translation="MLRPVFALFAAALLAGAAPKPAYDVVVRGGTIYDGSGGAPFLGD
                     VAIKGDRVAAVGKVSGTGAREVNARGLAVAPGFINMLSWATESLIADGHSQSDIRQGV
                     TLEVMGEGWSMGPLNPDMKALEVKRQSDIKFPVQWTTLGEYLSFLQKRGISTNVASFV
                     GATTVRIHELGERDIDPTPEQLDRMRALVRQAMDEGAMGVGSALIYAPGNFAETPELI
                     ALATESAKCGGMYISHM"
BASE COUNT          507 a          875 c         1075 g          485 t
ORIGIN      
        1 ttgccgccaa gctccgggcc gcgggcgtag gcgcggaagt gaagcgctat ccgggggtcg
       61 gccatatcgg cgtgctgacc gccttcgcca aaccgtttcg cgggaaagcg ccggtggtgg
      121 aggacgtggc ggcgttcgcg acacgcgtga cagcacactg acggctagga acgctccgca
      181 tcttccttga gccgcgtgag cagggccgcg gcgcgctcgg cgtgggggcc aatccagcgc
      241 tcgtggattt gctggatggg gacggcgttc agatggttcc agcgctcgcg gccgcgcttc
      301 accgggatga tcaagtccgc ctcttcgagc acgcggatat gctgcatgac cgtgcagcgg
      361 tcgagttcgg ggaaatgagc gcagagcgtg ccggtggtga gcggctggtc cctgagatcg
      421 tcgaggatct gccggcggat gggcgaggcg agcgccttga aaacttgatc gtgcacgtcg
      481 ctgattgaca tgttgtattt ctataacata tatgtcggcg cggcaaggga gaaggcttat
      541 ggacctgaag tttcgggcgt tcgcccatat ttcgaagccg gtcgaacagg tgttcgaagc
      601 ggttgccgat cccgaccagc tctcgcgcta tttcacgacg ggcggcgcga aagggcggct
      661 ggagacgggc gcgaccgtca cttgggactt tcacgatttt cccggcgctt tcccggtgca
      721 ggtgatcgaa attgtgccga acgcgcggat cgtgctcgaa tggaaagcca atgacggcgc
      781 ggagcagccc tacaacacgc gagtggagat gacgttcgaa ccgctggagg ctgggcggac
      841 cttggtcgcg atcgaggaaa gcggctggcg tgagagcgac gcgggactga aagcggcgtt
      901 cggcaattgc atgggctggt cgcagatgct gtgcgcactc aaggtctggc ttgagcacgg
      961 catcaacctg cgcgaaggca tgtacaaata ggtcagaaca gtcggccggg cctgatctgg
     1021 tcgggggtga tcccgacgtc tgcgataccc gccggccagt ctccacccgt tgccagtgct
     1081 tcggcgattt cggccatcgc gggggcggtc tggaggccgt agccgccctg gccggcaagc
     1141 cagaaaaagc cttccgcatc gggggcgaag ccggcgacgg ggacgcggtc ggcggtgaag
     1201 gtccgcaggc ccgcccatct gtgcgtgatg cgcgggacct ccagcgtcgt gaactccgtc
     1261 acgcggtggg cggcgacggc catgtcatat tcgtcgggct gggcgtcgca ggggtcgtcg
     1321 gggttctcgt cgaccggcga tgcgagcagg cggccggcat cgggcagcat gtacatgtaa
     1381 tcgacggccg tcttgatgaa cggccagtcg cggacgtcca acgcggccgg cgggtcgaac
     1441 acgatgacgg tgcggcgcat cgggctgagg ccgagcggac ggacgccggc gagcttggcc
     1501 atgcggtcgg cccaggcccc ggcggcgttg atcaagacgg gcgcttcgta gatgtcgccg
     1561 gctacggtcg cgacgcgcca ttgcgggccg atcgccgtga cgtgcgcgcc agtgacgatc
     1621 tcgccacctt cggcccggat ggcgcgctgg aagccttgga gcagcgcgtg cggatcgagg
     1681 cgcaggcctt cgcggtggac gaaggcggcg actactgcat ccggggccaa gcggagggcg
     1741 gggcagaaat gcgccgcccc ggccgcatcg agccgctcca ccgcgtcggt caggctgcgg
     1801 gtgatgcgct ccagctcgcc cagcgcgggc agcatcgctt cgttggcgat gaacaatgcc
     1861 ggcgtgactt tgcatagcgc gtcgaagcca gccggcgggt tcaggaagaa cgcgcggcta
     1921 taggccgtca gcgcgcgcac ggtcgcgccg ccgatcccgt aatgggagaa agtcacgctg
     1981 cggcccgaac tgtgatagcc gaccgcatcc tccgcctcga gaagcacgac cttgccgcgt
     2041 ctggccagtc gcgcgccggc ggacaggccg gccacgccgc cgccgatgat caggaaatcc
     2101 gctgttttcg tcgaggacat gcccgcagct aaagggaatg ggcggggttc ggcaagcttg
     2161 gcccgagcgg tgcgcgagca ggtctcttcc aacctgctcc gatctcgtta ggctggacaa
     2221 aaaggggaga ccgcaaatgc ttagacccgt gttcgcgctg tttgccgctg ccttgctggc
     2281 gggcgcggcg cccaagcccg cctacgacgt cgtggtccgg ggcgggacca tctatgatgg
     2341 gtcgggcggg gcgccattcc tgggcgacgt ggcgatcaag ggcgatcgcg tcgcggctgt
     2401 cggcaaggtg agcggaactg gggcgcgcga agtgaatgca cgcgggctcg ccgtcgcgcc
     2461 gggcttcatc aacatgctga gctgggcgac ggaatcgctg atcgcagacg ggcacagcca
     2521 gagcgacatt cgccagggcg tcacgctgga agtgatgggc gagggctggt cgatggggcc
     2581 gctcaatccg gatatgaagg cgctggaggt caagcgccag agcgatatca aattcccggt
     2641 ccagtggacg accttgggcg aatatctgag cttcctgcag aagcgcggca tctcgaccaa
     2701 tgtcgcgagc ttcgtcggcg cgacgacggt gcgcatccat gagctgggcg agcgcgacat
     2761 cgacccgacg cccgagcaat tggatcgcat gcgggcgctg gtccgccaag cgatggacga
     2821 aggggcgatg ggtgtcggat cggcactgat ctacgcgccc ggcaatttcg ccgagacgcc
     2881 ggagctgatc gcgcttgcca ccgaaagcgc caaatgtggc ggcatgtata tcagccatat
     2941 gc
//
LOCUS       DASQVK010000181         5759 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_264703,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000181 DASQVK010000000
VERSION     DASQVK010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5759)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5759)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5759
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_264703"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..206
                     /locus_tag="VE567_03830"
     CDS             <1..206
                     /locus_tag="VE567_03830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48003.1"
                     /translation="GAFRVAGQWEEHAPGPQLGDAGPPASKASLQGQVQGDMLALTVM
                     REGGTAETLTLLRGRRPKLVRCF"
     gene            complement(266..2014)
                     /locus_tag="VE567_03835"
     CDS             complement(266..2014)
                     /locus_tag="VE567_03835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HYZ48004.1"
                     /translation="MLNKRAAMLAAVSLAAVAFPSAAWADGCGALKPEYCEFEHPENA
                     NTLEGPQLSGFTSSAPVFSPSKGVTLGFEGLSQYDVGSFGRGFVPPDTMGAVGTTQVM
                     NFANGGVGVYSKTDGAQLQKISDVQFWANAGQTGANGDSRVLFDSNSKRWIALAFGNS
                     VSDIQIAVSDTSDALGGWKSTKFTGFAGGTADYPTLAMDKNAIYIGTNNFGAFDPVLQ
                     TSFKGTTLNVIPLADILGAGGPTAANRVSFVDPYTGFLPLQDRGFAIQGVNSQNNSTT
                     GKILAVQAYGPGLTLYDINNAGTPLATRGNVTLVSYPYDGNGPGRQPNLVPDVDLNPN
                     DNFTSNDRVVDTLDDRVGSSVYQVGNKIYSIHTITPPGTDHTSVRLDVTDADTFTLLD
                     SYTFAGGGNFDYYEGSLAVNANGDIVVGYNRSGTGTDSFGVDGKISVYAGLFNTASDG
                     SLVFRGSILLKQSLVDDYHNNAQVTVNGQTFVCGLDGQVACGRQRWGDYSAVSLDPND
                     QNTFWVFGEFAREYNDTAGGHPGGSGGSRWGQWISAINFSAAVPEPATWAMMIAGFGM
                     VGFAMRRSRKVSVSFA"
     gene            complement(2233..3135)
                     /locus_tag="VE567_03840"
     CDS             complement(2233..3135)
                     /locus_tag="VE567_03840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HYZ48005.1"
                     /translation="MRRLPPLTAIEAFVQVARLGSVKAAAEELALSSPALSRRIQALE
                     RFFDRPLFDRAPGAMRLTADGERLLEAVSPHLNGLTDAIEAVTSEGNVWRLRLGVLPL
                     FASQQIFPHLSDLRKRHPELHLDIDTAPHALARLADGLDAAIVLARDVDPGLYAHRLD
                     RNRVLAIGSPGLTKGREPIRRPADLARTTVFLHRDMPDTFEAFCQALGLEDLEPVAID
                     HFDSGQLMLEAAAQGLGVAIMHESHLANAHDNRLVRLFDAEVESPYSYWFACRPRALE
                     KRAVRLFRDWLLELFSKRDERTAA"
     gene            3418..5715
                     /locus_tag="VE567_03845"
     CDS             3418..5715
                     /locus_tag="VE567_03845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDC48 family AAA ATPase"
                     /protein_id="HYZ48006.1"
                     /translation="MADNEDQTRRVQVANARPDDSGRGLARIPRAIMMALGLQEGDVV
                     EIVGKRTTPARAVLPYPEDEGLEIIRLDGLQRANAGVGSGDFVELRRVESRPATRVIF
                     APAQQNLRLHGSAQALKRSFYGRPLAAGDVVATAGQQRVAQGDMPPQLRQMLAAPAYA
                     LQEIRLVVVSSTPKGIVHIDENTEVELRPEYEEPQNRRADVTYDDIGGLAGAIDQLRE
                     MVELPLRYPELFQRLGVDPPKGVLLHGPPGTGKTRLARAVANESDAEFFLVNGPEIMG
                     SAYGESEKALREVFEKATQAAPSIIFIDEIDSIAPKRGQVTGEAEKRLVAQLLTLMDG
                     LQPRTNLVVIAATNRPEAIDEALRRPGRFDREIVIGVPDERGRREILGIHTRGMPLDA
                     GVDLDELARTTYGFVGADLGALGREAAIEAVRRIMPKLNLEERTIPPEVLDTLSVVRD
                     DFLEALKRVQPSAMREVMVQKPNVRWSDIGGLDDARERLREGVELPLKNPDAFRRLGI
                     RPAKGFLLYGPPGTGKTLLAKAVAREAEANFIATKSSDLLSKWYGESEQQIARLFARA
                     RQVAPTVIFIDELDSLVPMRGGGLGEPQVTERVVNTILAEMDGLEELQSVVVIGATNR
                     PNLVDPALLRPGRFDELVYVTVPDEAGRQRILEVHTAKMPLAEDVDLESLARRTDRFT
                     GADLEDLVRRAGLSALRESLGNETVAMAHFEKALEDTRASVTPEMEREYEQIAANIKQ
                     EAMALQPIGFIAPGMLTPRGTKGGS"
BASE COUNT         1052 a         1856 c         1861 g          990 t
ORIGIN      
        1 cgggcgcttt ccgcgtcgcc ggccagtggg aagaacacgc tcccggccca caactggggg
       61 atgcaggccc gccggcatcc aaggcgtcgc tgcagggcca ggtccaaggc gatatgctgg
      121 cgctcaccgt gatgcgcgaa ggcggcacgg cggagacgct gacgctgctc cgcggcaggc
      181 gccccaagct ggtgcgctgc ttttagcttt taagaaaatg ggcgggtgga acatgctcca
      241 cccgcccgat gctcggctta tcggttcagg cgaagctgac gctcaccttg cgcgagcggc
      301 gcatcgcgaa gccgaccatg ccgaagccgg cgatcatcat cgcccaggtc gccggttccg
      361 gaacagccgc actgaagttg atcgcgctga tccactggcc ccagcgcgaa ccgccgctgc
      421 cacccggatg gccgcccgcg gtgtcgttat attcgcgagc aaactcgcca aagacccaga
      481 aggtgttctg gtcgttcgga tcgagcgaga ccgcgctgta atcgccccag cgctggcggc
      541 cgcacgcgac ctgcccatcc agaccacaga caaaggtctg gccattgacc gtcacctgcg
      601 cattgttgtg ataatcgtcg accaggctct gcttgagcag gatcgacccg cggaagacga
      661 gcgagccgtc tgacgccgta ttgaacaggc cggcgtaaac cgaaatcttg ccatcgacgc
      721 cgaacgagtc ggtgccggtg cccgaacggt tatagccgac cacaatgtcg ccattggcgt
      781 tcaccgccag cgagccttca taatagtcga aattgccgcc gccggcgaag gtgtagctgt
      841 cgagcaaggt gaacgtatcc gcatcggtca cgtccagccg caccgacgtg tgatccgtgc
      901 ccggcggcgt gatcgtgtga atcgaataga tcttgttgcc gacctgatac acgctcgacc
      961 cgacccggtc gtcgagcgtg tcaacgacgc ggtcgttgct cgtgaaattg tcgttcgggt
     1021 tcaagtcgac gtccggcacg aggttcggct gccggcccgg cccgttgcca tcatacggat
     1081 agctgaccag cgtcacattg ccccgcgtcg ccagcggcgt gccggcattg ttgatgtcgt
     1141 agagcgtgag gccggggcca taggcttgga cggcaaggat tttgccggtg gtgctgttgt
     1201 tctggctgtt cacgccctgg atcgcaaagc cgcggtcctg cagcggcagg aagccggtat
     1261 aggggtccac gaacgagact cgattcgccg cggtcggccc gcccgctccc agaatgtccg
     1321 ccagcggaat gacgttgagc gtcgtcccct tgaacgatgt ctgaaggacc gggtcgaatg
     1381 cgccgaaatt gttggtgccg atgtagatcg cattcttgtc catcgccaag gtcggataat
     1441 ccgcggtgcc ccccgcgaag ccggtgaact tggtggactt ccagccgccg agcgcgtcgg
     1501 acgtatccga aaccgcaatc tggatgtcgc tcacgctgtt gccgaacgcg agcgcgatcc
     1561 agcgtttgct gttcgaatcg aacagcacgc gcgagtcgcc attcgcgccc gtctgccccg
     1621 cattcgccca gaattgcacg tcggaaatct tctggagctg tgcaccgtcg gtcttgctgt
     1681 aaacgccaac gccgccgttc gcgaaattca tgacctgcgt cgtgccgacc gcgcccatgg
     1741 tatcaggcgg aacgaagccg cggccgaacg agcccacgtc atactggctg aggccctcga
     1801 accccagcgt gacgcccttg ctaggcgaaa ataccggcgc ggagcttgta aagccgctca
     1861 gttgcggccc ttccagggta ttggcatttt cgggatgttc gaactcgcaa tattcgggct
     1921 tgagagcgcc gcaaccgtcc gcccacgcgg cggacgggaa tgcgacggcc gcaagcgaaa
     1981 ccgctgccag catggctgca cgtttgttca gcatggattt caccccttcg tttggccgca
     2041 gactggatgg gcaatcgccc gtcaccccca aagctacggc gcagactcca atcgagcctg
     2101 gagggaggtt catacgggca cggggtcgtg tcaatcgtta ttaacaaccg gtttactaac
     2161 tgccgtgcga tttttttgcc tcaatatgaa acagttcccg ggcatcgcgc cggggcgctc
     2221 aggctcttcg gctcacgcgg cggtgcgttc gtcgcgcttg ctgaacagct ccagcagcca
     2281 gtcgcggaaa aggcgcaccg cacgcttttc cagcgcgcgc gggcggcagg cgaaccaata
     2341 gctgtaaggg ctctccactt cggcatcgaa cagccgcacc agccgattgt cgtgcgcgtt
     2401 cgccaaatgg ctttcgtgca tgatggcgac gcccaaacct tgcgccgccg cctccagcat
     2461 cagctggcct gaatcgaaat ggtcgatcgc cacgggctcg agatcctcca gccccagcgc
     2521 ctggcaaaag gcttcgaacg tgtcgggcat gtcgcggtgg aggaataccg tggtgcgggc
     2581 cagatccgcg gggcggcgga tcggttcgcg gccctttgtc aggccgggtg agccgatcgc
     2641 gagcacgcgg ttgcggtcga gccggtgggc gtagagcccc ggatcgacat ctcgcgcgag
     2701 cacgatggcc gcgtcgagcc cgtccgccag gcgcgccagt gcatggggcg cggtgtcgat
     2761 atcgaggtgc aactccggat gccgtttgcg cagatcggac agatgcggga aaatctgctg
     2821 cgaggcaaac agcggcagca cgcccagccg cagccgccag acatttccct cgcttgttac
     2881 ggcttcgatc gcgtcggtga gtccgttgag atggggcgag accgcttcga gcagccgttc
     2941 gccgtccgcg gtcaaccgca ttgcgccggg cgcccggtcg aacaacgggc ggtcgaagaa
     3001 gcgttcgagc gcctggatgc gccggctgag cgccggcgag gacaaggcca gctcctcggc
     3061 tgcggctttg accgaaccga gccgcgccac ctgtacaaac gcctcgatcg cggtgagcgg
     3121 gggcaagcga cgcacggtat caacctcttc cttgtgcgct gcaacagccc attcgagagc
     3181 cttgttccgc gctattctga tctgttccta gagcagatcg attgcgtttt ttgcaacaac
     3241 ccttttgctc ttcgcacttg caacataatc tgctgcgacg cacataggcc gggcctttca
     3301 ggcatcctct cctaacaaac ttcaaagggc tggccttaat aggccggccc atttttttgt
     3361 cctgccctcg caacgatggc gcgagcctcc tagttaagct gcgaacggag gcaagcgatg
     3421 gcggataacg aagaccaaac aaggcgcgta caagtcgcca atgcccggcc ggacgacagc
     3481 ggccgcggcc tcgcccggat tccgcgggcg atcatgatgg cgctgggcct tcaggaaggc
     3541 gatgtcgtgg agatcgtcgg caaacgcacc acgcccgcgc gcgccgtcct gccctatccg
     3601 gaagacgagg ggttggagat catccggctc gacggcctgc agcgcgccaa tgcgggcgtc
     3661 ggctcgggcg atttcgtcga gctgcgccgc gtggagtcgc gaccggcgac gcgggtcatt
     3721 ttcgccccag cgcaacagaa tctccggctt cacggctcgg cccaggcgct gaagcgcagc
     3781 ttttacggcc ggccgctcgc tgcaggcgat gtcgttgcca ctgccggcca gcagcgcgtc
     3841 gcccaaggcg acatgccgcc ccagctccgg cagatgctcg ccgccccggc ttatgcgctg
     3901 caggaaattc gcctggtcgt ggtctcatcg acgcccaagg gcatcgtcca tatcgacgaa
     3961 aataccgagg ttgagctgcg gcccgaatat gaggagccgc agaatcggcg cgccgacgtc
     4021 acttatgacg atattggcgg gctcgccggc gcgatcgacc agctccgcga aatggtcgag
     4081 ctgccgctgc gctatcccga gctgttccag cgactgggcg tcgatccgcc caagggagtg
     4141 ctgcttcacg ggccgcccgg caccggcaag acccggctcg cccgcgcggt cgccaatgaa
     4201 tcggacgccg aattcttcct tgtgaacggc cccgaaatca tgggctccgc ctatggcgag
     4261 agcgaaaagg cgctgcgcga agtctttgaa aaggcgacgc aggctgcgcc gtcgatcatc
     4321 ttcatcgacg agatcgactc gatcgccccc aagcgcgggc aagtcaccgg cgaggctgaa
     4381 aaacgtctcg tcgcgcaatt gctgaccctg atggatggcc tgcagccgcg cacgaacctg
     4441 gtggtgatcg ccgccacgaa ccgcccggag gcgatcgacg aggcgctgcg gcggccgggt
     4501 cgtttcgatc gtgaaatcgt gatcggcgtg cccgatgaac gcgggcgacg tgaaattctc
     4561 ggcatccaca cgcgcggcat gccgttggac gccggcgtcg atctcgacga gcttgcccgc
     4621 acgacttacg gctttgtggg cgccgacctg ggcgcactcg ggcgcgaggc ggcgatcgag
     4681 gcagtgcgcc ggatcatgcc gaagttgaac ctcgaggaac ggacgatacc gccagaagtg
     4741 ctcgacacgc tttcggtggt gcgcgacgat tttctcgaag cgctgaagcg ggtccagccc
     4801 tcggccatgc gcgaagtcat ggtgcagaag cccaatgtgc gctggagcga tatcggcggc
     4861 ctcgacgatg cgcgggagcg cctgcgcgaa ggtgtcgagc tgccgctcaa gaacccggac
     4921 gcattccggc ggctcggcat ccggcctgcc aagggtttcc tcctctacgg ccctcccggc
     4981 acgggcaaaa ccttgctcgc caaggcggtc gcgcgggaag cggaggcgaa cttcatcgcc
     5041 accaaatcct cggacctgct ctccaaatgg tatggggaaa gcgagcagca gatcgcgcgg
     5101 ctgtttgcgc gtgcgcggca agtggcgccg acggtgatct tcatcgacga gctcgatagc
     5161 ctggtgccga tgcgcggcgg cgggctcggc gagccccaag tgaccgagcg ggtggtgaac
     5221 acgatcctgg ccgagatgga cgggctggaa gagctgcaat cggtcgtggt gatcggcgcc
     5281 accaaccggc cgaacctggt cgacccggcc ctgctgcggc cgggccggtt cgacgagctg
     5341 gtctatgtga ccgtgcccga cgaggcgggc cgccaacgca ttcttgaagt gcacacggca
     5401 aagatgccgc tggccgaaga cgtggacctg gaatcgctcg cccgccggac cgaccgcttc
     5461 accggtgcgg acctcgagga tctggtgcgt cgcgccggac tgtcggcact acgcgagtcg
     5521 ctcggcaacg agacggtcgc aatggcgcat ttcgaaaagg cgctcgagga cactcgtgcc
     5581 tcggtcacgc cggaaatgga gcgcgagtac gaacagatcg cggccaacat caaacaggaa
     5641 gcaatggcgc tgcagccgat cggcttcatc gcgcccggca tgctgacgcc gcgcggcacc
     5701 aagggcggga gctaagctcc cgcccctacg ctagacggat cggcggcccg cgaacagct
//
LOCUS       DASQVK010000182         2356 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_423827,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000182 DASQVK010000000
VERSION     DASQVK010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2356
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423827"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..492
                     /locus_tag="VE567_03850"
     CDS             <1..492
                     /locus_tag="VE567_03850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48007.1"
                     /translation="YVEIEDEVRVVLVDDFPVVVYSKERPFVVGDGRQSLLELALAAT
                     PAAQRSGVLSGMVADLDRADLDAVVPAGNRRILSWRHNLDSGARPVLLDQGETRAACV
                     RLAVDAAKAIGIRFGSIDVVRVGGAWQILEINAGVKMEALSRSHPELAYAAYEAALDK
                     VLA"
     gene            653..1654
                     /locus_tag="VE567_03855"
     CDS             653..1654
                     /locus_tag="VE567_03855"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HYZ48008.1"
                     /translation="MSDVVNRQILLVEKPTGKLGLEHFKLTQGTIPEPKDDEALLRTR
                     YISLDAANRAWMHGATYRAAVEANTVMAGGAIAEVMESKAPGLAKGDIVFGDTGWQDY
                     AAVPAKHLSKMPKLEPMTHLLSVFGVAGLTAYFGLLHVGKPKEGETVVVSAAAGSVGS
                     IVGQIARIKGCSVVGIAGGKDKCDWLTSELGFDAAVDYKGGATYKALRAAAPGGIDVY
                     FDNVGGDILEACLSQMNNRGRIACCGAISQYDGVPSAHGLRGVPGLIVVKRLIMQGFI
                     VMDFMDQRNAALVDLQSWVASGRLKVQEDVIDGLENTPKALIGLLAGENRGKRMVKV"
     gene            complement(1742..>2356)
                     /locus_tag="VE567_03860"
     CDS             complement(1742..>2356)
                     /locus_tag="VE567_03860"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYZ48009.1"
                     /translation="MGFEWTAMSYQEKAVSNQIYWVFGLAMLLVYLVLAGQYESWYAP
                     ISVILAVPLSLIGPMIVLTGLRIENNLYTQIGIILLIALSAKNAILIVEVALEHHVRD
                     RRPLLESAVDAARARFRPILMTSFAFILGVVPLVLATGAGANARKSIGITVFSGMIAS
                     TCLAVLFVPAFFVVVQRFENWLKEGKGKKPASQAVPQTPSAHWL"
BASE COUNT          456 a          715 c          776 g          409 t
ORIGIN      
        1 tatgtcgaaa tcgaggatga agtccgtgtc gtgctggtcg atgattttcc ggtcgtcgtc
       61 tacagcaagg agcggccatt cgtcgtcggc gacggcaggc agtcactgct cgaacttgcg
      121 ctcgctgcga caccggcggc gcaacggtcg ggcgtgcttt caggcatggt tgccgatctc
      181 gatcgggccg atctcgacgc cgtcgtgccg gccggcaacc gccgcatcct gagctggcgt
      241 cataatctcg attcaggcgc gcggccggtt ctgctggacc aaggcgagac ccgcgccgcc
      301 tgcgttcggc tcgcagtcga tgcggcgaag gcgatcggca tccgtttcgg gtcgatcgac
      361 gtggtgcggg tcggcggcgc ctggcagatt ctcgaaatca atgccggcgt gaagatggaa
      421 gcgctgagcc gctcgcatcc cgaattggcc tatgcggcgt atgaggcagc gctggataag
      481 gtgcttgcgt gatctcgtac acactccctt cgccgggacg acggataatg tttccgttgt
      541 ggaatgcgcg cccaccgact agcgtcgtgc gcagcgcata atctgtgcaa atgaacgctt
      601 tcctgcgcgc tcaattgcat cgggaataac cagaacgagg ggagagaaca ccatgagcga
      661 cgtcgtcaat cgccagatac tgctggtgga aaagccgacc ggcaaacttg gattggagca
      721 tttcaaactg acgcaaggga ccatcccgga gccaaaggac gacgaggcgc tgctgcggac
      781 gcgctatatc tcgctggacg ccgccaaccg cgcctggatg cacggcgcga cgtatcgcgc
      841 cgcggtcgaa gccaacaccg tgatggcggg cggcgccatt gccgaggtga tggagtcgaa
      901 agcgcccggg ctcgccaaag gagacatcgt gttcggcgac accggctggc aggattacgc
      961 cgcggtgccg gcgaaacatc tcagcaagat gccgaagctg gaaccgatga cgcatctgct
     1021 cagcgttttt ggcgtcgccg ggctgaccgc ctatttcggc ctgctccatg tcggcaagcc
     1081 gaaagagggc gagaccgtgg tggtgtcggc tgccgcggga tcagtcggct ccatcgtcgg
     1141 ccaaatcgcc aggatcaagg gctgcagcgt cgtcggcatc gccgggggca aggacaagtg
     1201 cgactggctc accagcgagc tcggcttcga cgccgcggtc gattacaagg gcggcgccac
     1261 ctacaaggcg ctgcgagccg ccgcgcccgg cggcatcgac gtctatttcg acaatgtcgg
     1321 cggcgacatc ctggaagcct gcctgtcgca gatgaacaat cgcggccgga tcgcctgctg
     1381 cggcgcgatc tcgcaatatg acggcgtccc ctccgcgcac ggcctgcgcg gcgtgcccgg
     1441 cctgatcgtg gtgaagcggc tcatcatgca gggcttcatc gtgatggatt tcatggacca
     1501 gcgtaatgcc gcgctcgttg acctgcagtc ctgggtcgcc tcaggcagac tcaaagtgca
     1561 ggaagacgtt attgatggtc ttgagaacac gccgaaggcg ctgatcggat tgttggccgg
     1621 cgagaaccgc ggcaagcgga tggtgaaggt gtgaagttgt agggtcggca aagcgcagcg
     1681 tgcccaccat cgcgagccga gtgcatatgg tgggcacggc gcaagcgcgc ctttgcccac
     1741 cctacaacca atgcgcactc ggcgtctgcg ggacggcttg cgacgcgggc ttctttccct
     1801 tgccttcctt cagccagttc tcgaagcgct ggaccacgac gaagaacgcc ggcacgaaca
     1861 gcaccgcaag gcaggtcgag gcgatcatgc cggagaacac ggtgatgccg atcgacttgc
     1921 gcgcgttggc gccggcgccg gtcgcaagca ccaagggcac cacgccgagg atgaaggcga
     1981 acgatgtcat caggatcggc cggaaccggg cgcgtgccgc gtcgaccgcg gactccaata
     2041 gcggcctgcg gtcgcgcaca tggtgctcga gcgcgacctc gacgatcagg atcgcattct
     2101 tggccgacag cgcgatcagg agaatgatgc cgatctgggt gtagagattg ttctcgattc
     2161 gcaatcccgt cagcacgatc atcgggccga tcagcgacag cggcaccgcc aggatcaccg
     2221 agatcggcgc gtaccagctc tcatattgtc cggcgagcac gagatagacc agcagcatgg
     2281 caaggccgaa cacccagtag atctgattgg agacggcctt ctcctggtac gacatcgcgg
     2341 tccattcgaa gcccat
//
LOCUS       DASQVK010000183         2215 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_296352,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000183 DASQVK010000000
VERSION     DASQVK010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2215
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296352"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            342..746
                     /locus_tag="VE567_03865"
     CDS             342..746
                     /locus_tag="VE567_03865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48010.1"
                     /translation="MAEVKPVATVLSRREKLERWAEIIEAAGPQRFQTFYQVEYAPAS
                     ERAAVRRDGSPFALAYADPVLRDAGLEGDRYGQATAFFELSEREAHRLFCSCMHGGTV
                     NSDELASSLRRMASQENGGGGVFSRITAGLGL"
     gene            884..1249
                     /locus_tag="VE567_03870"
     CDS             884..1249
                     /locus_tag="VE567_03870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48011.1"
                     /translation="MRMENGVEFETVTGDNGEVITRERRYAVLLRGVIGRAGARNRMP
                     LTVRNLSTHGLKGECAYPPRPNDPVEIDLPGLGLVAGHVRWGDGCTIGVIFDGPIDPT
                     LAFTRNRPGVRRSGLIAAH"
     gene            complement(1359..1541)
                     /locus_tag="VE567_03875"
     CDS             complement(1359..1541)
                     /locus_tag="VE567_03875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48012.1"
                     /translation="MPDPLLTNLLRARRYESADPATSVELAQAEAIAELDRLLVEKAL
                     SRAAAPVVPLRAGGRR"
     gene            complement(1655..>2215)
                     /locus_tag="VE567_03880"
     CDS             complement(1655..>2215)
                     /locus_tag="VE567_03880"
                     /inference="COORDINATES: protein motif:HMM:NF016296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HYZ48013.1"
                     /translation="VAVDAVLTNYFGEPASTLARQVRFALIWVGYFAGGALAFLTFAP
                     PAGAAMAQPDPLPQAANEEPEAAYPDALWVSRGRETARVPLEAIEWIEAEGDYVRLHA
                     RTGGGLMRGTLSGLEAQLDPRIFARVHRSAICRRSAIGAMLRKPSGAMAVRLESGAEV
                     PVGRRYRDSVAALLAPTRESQRRLSA"
BASE COUNT          394 a          736 c          733 g          352 t
ORIGIN      
        1 ttgccaactc acgccgttcg ttccgaacga agtcgagaaa cgatcagtgc cgccccgccg
       61 ccgatccgag ctggcttata tcggtggtca ctcggccgct tgcggcaacg gcgctgcctt
      121 ggcttgcctt ttcgcaagcg cggaggtggc gcgctttcga tccccgccag accgactgtg
      181 gctccgatgc gacagtgcgc cggaaagacg cggctggacc gtcgcgctgc tgatgcgact
      241 cgggcaggaa aggcgtaaga tgccgatgac gcgcgtcgct acctagtaac tttgttgaga
      301 ggctagcgat ggaacatcac agcttagaaa cgcttcgccg gatggcggag gtaaagccgg
      361 ttgcgaccgt gttgagccgg cgcgaaaagc tcgaacgctg ggccgaaata atcgaggcgg
      421 caggcccgca gcgtttccag accttctatc aggttgaata tgcgcccgcc tcggagcgcg
      481 cagccgttcg gcgggatggg tcgccgttcg cgcttgccta tgccgacccg gtgctccgcg
      541 atgccgggct cgaaggcgac cgctacggac aggcgaccgc cttcttcgag ctgtcggagc
      601 gggaagcgca ccggctgttc tgctcctgca tgcatggcgg cacagtgaac tcggacgagc
      661 tcgcgtcgtc actgcgccgg atggcctcac aagaaaacgg cggcggcggt gtgttctcga
      721 gaatcacggc cggactaggc ctctgatctc ggccacccaa aaaccgggaa aatatcggcg
      781 ccgccacctg cgagcgccga ttttttcgtc atgcagcgat ccagtcgcca ggcaagggta
      841 accaccgtat ttaccaactc ttcaccagcc acatggcaca tcgttgcgta tggagaacgg
      901 tgtcgagttc gaaacggtca cgggcgacaa tggcgaggtg atcacgcgcg aacggcgcta
      961 tgccgtgctg ctccgcggag taatcgggcg cgcgggcgcg cgcaaccgga tgccgcttac
     1021 cgtccgcaac ctctcgacac atggtctgaa gggcgagtgc gcctatccgc cgcgacccaa
     1081 tgatccggtc gagatcgacc tgcccggtct cggtcttgtc gccgggcatg ttcgctgggg
     1141 agatggctgc acgattggcg tcatattcga cgggccgatc gacccgacgc tggcgttcac
     1201 gcgcaatcgg ccgggcgtcc gccgctccgg cctcattgca gcgcactgag ttaagaccca
     1261 aacacccggc tcaccgcgct cgtcgaagcc ctgcccggcg ctcgtggggt ggttggggag
     1321 tggcgccgga caggacttcg tggaacgcga aaggggcgtc agcgcctccc gccggcccgt
     1381 agcggcacca ctggggctgc cgcgcgcgaa agcgcctttt caaccagcag ccggtcgagc
     1441 tcggcgatcg cctcggcctg cgcgagctca accgaagtgg ccggatcggc ggattcataa
     1501 cgacgcgcgc gcaggaggtt ggtcaataac gggtcgggca tgacgccccc gtgccgcaaa
     1561 gcccttcatc agggaatcga aggtcggtgg aacgcggcgc gcagcggcga gcgtcagtga
     1621 ttcgggccga acgccccaaa gagcgcgacc aacgtcacgc tgaaaggcgc cgctgcgact
     1681 cgcgcgttgg ggcgagcagg gccgccaccg agtcgcgata gcggcggccg accggcactt
     1741 cggcgccgct ttccagccgc acagccatcg ctcccgaagg cttgcgcaac atcgccccga
     1801 ttgcgcttcg tcggcagatc gcagagcggt gaacccgcgc aaagatccgc ggatcgagtt
     1861 gcgcttcgag cccgctaagc gtcccgcgca tcagtccgcc cccggtgcgg gcgtggaggc
     1921 gcacataatc gccttccgcc tcgatccact cgatcgcctc caagggaacc cgtgcggtct
     1981 cgcgcccccg gctcacccag agcgcatcgg gataggctgc ctccggctct tcattggccg
     2041 cctggggcag cgggtcgggc tgcgccatcg ccgcgccggc tggcggcgcg aaggtgagga
     2101 acgccagcgc cccgccggcg aaatagccga cccagatcaa ggcaaagcgg acctggcgtg
     2161 caagcgtcga ggcgggctcg ccaaaataat tggtgagcac cgcgtccacc gccac
//
LOCUS       DASQVK010000184         2156 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_424400,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000184 DASQVK010000000
VERSION     DASQVK010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2156
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424400"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..141)
                     /locus_tag="VE567_03885"
     CDS             complement(<1..141)
                     /locus_tag="VE567_03885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase"
                     /protein_id="HYZ48014.1"
                     /translation="MSVEVVRSALLESVPHGFLGRRGGVSTGVHEGLNVGLGSDDDRA
                     AVA"
     gene            complement(138..653)
                     /locus_tag="VE567_03890"
     CDS             complement(138..653)
                     /locus_tag="VE567_03890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYZ48015.1"
                     /translation="MIDYRDARPDDGPALDAMARAVWLETFGHSGSPEDIALYLGKAY
                     GPQGDLIRHLADPAHRFRLACMDGAIIGYAKLSLPWLPHGTCGPNARQLSQLYVTREH
                     RGNGVAQTLMDWAIGSARAEGADELLLTVWEENHRAMRFYQKLGFVHVGDYAFPLGEQ
                     IDRDLIMRLAL"
     gene            complement(650..1624)
                     /locus_tag="VE567_03895"
     CDS             complement(650..1624)
                     /locus_tag="VE567_03895"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HYZ48016.1"
                     /translation="MAAANRHYYATRDPLGASGDFTTAPEISQMFGELIGLWLADLWT
                     RAGKPHIHYVELGPGRGTLAADARRAMRSAGLEPAIHFVETSPVLREQQRARHSGAIF
                     HDGVDTLPADAPLLIVANEFFDALPVRQLVHSANGWRERHLAWANPVFVPVASGPRLD
                     DILPEHLRAAPTGSIIETSPASAAIARQLAHRLVTQGGAALIADYGYEGPAIGDTLQA
                     VRGHAYANPFEEPGERDLTAHVDFATLGEAARAEGARSFGPIGQGEWLQRLGITARAE
                     RLSQGAPGRREEIMAALMRLTALDQMGNLFKALALTAPEWPQPAGFEA"
     gene            complement(1766..>2156)
                     /locus_tag="VE567_03900"
     CDS             complement(1766..>2156)
                     /locus_tag="VE567_03900"
                     /EC_number="2.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007688535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase family
                     protein"
                     /protein_id="HYZ48017.1"
                     /translation="GELWGRPTTVPWAIIFPRAGPEPRHPSQLYEAGAEGILLFVILW
                     FLFWKTDARYQPGKLVGAFGLGYGLVRFSLEKVRNPDAGLEHLSWGLTMGQTLSLPLV
                     LLGLYFILTAKRRRQRIEPVAGVEGVA"
BASE COUNT          372 a          711 c          741 g          332 t
ORIGIN      
        1 cgcgacggca gccctatcgt cgtccgatcc gaggccgaca ttcagccctt catgcacccc
       61 cgttgatacg cccccgcgcc ggccgagaaa gccgtgcggc acgctttcca gcaaggcgga
      121 tcggacgacc tcgacgctca caacgcgagc cgcatgatca agtcgcggtc gatctgctcg
      181 cccaacggaa aggcatagtc gccgacatgc acaaagccga gcttctggta gaagcgcatc
      241 gcgcggtgat tttcctccca gacggtcagc agaagctcgt cggcgccctc ggcgcgcgcg
      301 gacccgatgg cccaatccat caacgtctgg gcgacgccat tccctcgatg ctcccgcgta
      361 acgtagagct ggctcagctg gcgggcattg ggtccgcatg tcccgtgagg cagccagggc
      421 agcgaaagct tggcatagcc gataatcgcg ccgtccatgc aggccaggcg gaagcgatgg
      481 gcgggatcgg caagatgccg gatcaggtcg ccctgagggc cataggcctt gccaagatag
      541 agggcgatgt cctccggcga gccgctatgg ccgaacgttt ccagccacac cgcacgcgcc
      601 atggcgtcca gtgccgggcc gtcgtcgggc cgcgcgtcac gataatcgat catgcttcaa
      661 agcctgccgg ttgcggccac tcgggcgcgg taagggcgag cgccttgaac aggtttccca
      721 tctgatccag cgcggtgagg cgcatgagcg ccgccataat ctcctcgcgg cggccgggcg
      781 ctccttgcga taggcgctcg gctcgtgccg tgatgcccag gcgctggagc cattcgccct
      841 ggccgatcgg gccgaagctc cgcgcaccct cggcccgcgc ggcctcgccg agcgtcgcga
      901 aatcgacatg tgcggtcagg tcgcgttcgc ccggttcttc gaacgggttc gcataggcat
      961 ggccgcgcac cgcttggagc gtgtcgccga tcgcgggccc ctcatagcca taatcggcga
     1021 tcagcgcggc cccgccttgg gtgacgagcc ggtgcgcgag ctggcgcgca atggcggcgg
     1081 aagcaggcga ggtttcgatg atgctgccgg tcggggcggc gcggagatgc tcgggcagga
     1141 tgtcgtcaag cctgggtccg ctcgcgaccg gcacgaacac cggatttgcc caggcgagat
     1201 ggcgctcgcg ccagccgttt gcggagtgca cgagctggcg gacgggcagg gcgtcgaaga
     1261 attcattggc gacgatcagc agcggcgcat cggcgggcag ggtgtcgacg ccgtcatgga
     1321 aaatcgcgcc ggaatggcgc gcgcgctgct gctcccgaag caccgggctg gtctcgacga
     1381 agtgaatggc cggctccagg ccggcgctgc gcatcgcgcg gcgagcatcc gccgcaagcg
     1441 tgccgcggcc cgggccgagt tcgacatagt gaatgtgagg cttgcccgcg cgcgtccaga
     1501 ggtcggcgag ccacaggccg atcaattccc caaacatctg gctgatttcg ggcgccgtgg
     1561 tgaagtcccc agacgcgccg agcggatcgc gagtggcgta atagtgccgg ttcgcggccg
     1621 ccatgaaatg cgcgaccggg atcggcccct ggatcgcgat cgcggcggca agagcgtccg
     1681 tgcaggtgag gcgattgtcg gccacgatcg gcacttaggt cgagaagcgt ccgctcgtca
     1741 tccccccgcg agcggaaaac ctgcctcagg ctacgccttc caccccggca accggctcga
     1801 tgcgctggcg ccgccgcttg gcggtcagta tgaaataaag gccgagcagg acaagaggca
     1861 ggctgagcgt ctggcccatt gtcagacccc aggagaggtg ctccagcccc gcatccgggt
     1921 ttcgcacttt ctccaggctg aagcgtacga ggccatagcc caggccgaag gcgccgacga
     1981 gcttgccggg ctggtagcgc gcatcggtct tccagaacag aaaccatagg atcacgaaca
     2041 gcaggatgcc ttcggcgccg gcttcgtaaa gctggctcgg atggcgcggc tcgggtccgg
     2101 cgcgtgggaa gatgattgcc cagggcaccg tggtgggccg cccccaaagc tcgcca
//
LOCUS       DASQVK010000185         2753 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_455200,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000185 DASQVK010000000
VERSION     DASQVK010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2753
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_455200"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            84..1310
                     /locus_tag="VE567_03905"
     CDS             84..1310
                     /locus_tag="VE567_03905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020486503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3419 family protein"
                     /protein_id="HYZ48018.1"
                     /translation="MGHAATVKAVKAAAVQSSELNKQGLLERAFAFAFRGLVYAQIWE
                     DPLVDMEALAIAPDSRVVTIASGGCNVLSYLTADPASITAVDLNTAHVALNKLKLAAA
                     RHLPDHASFRRFFGEADTSANIDAYKRYVRPHLDETSLRYWEGRDLIGRRRIGGFARG
                     IYKRGLLGNFIGLAHIIAKLYKIDPRELLEAETIEEQRAIFEARFAPVFDKKFVRWLT
                     DQPASLFGLGIPPAQYEALAGDDPNGMAAVLRARLAKLACDFDIRENYFAWQAFGRGY
                     GKAPNAPVPPYLEAANYRAVVDRVDRVEVRHVNMVEHLRQQPAASLDRYILLDAQDWM
                     NDGQLTALWSEITRTARPGARVLFRTAAEPSLLPGRVPDAILSRWRYAEAQSRDFTRR
                     DRSSIYGGVHLYLFEG"
     gene            1310..1951
                     /locus_tag="VE567_03910"
     CDS             1310..1951
                     /locus_tag="VE567_03910"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYZ48019.1"
                     /translation="MDVAARRMDAIYRGQRHIYDLTRKYYLLGRDRLIRELAPPAGGS
                     VLEVGCGTARNLIAAAKAWPQARCFGFDISAAMLETARASVRKAGLDGRIRLAPGDAT
                     VWDGEEMFGEAAFDRIFLSYTLSMIPDWRAAIDQAARALRPGGEVHIVDFGQQERLPR
                     WWRAALFAWLARFEVTPRAELEAAVREAAARHGLRVDFRPLFRGYAWSAVLSA"
     gene            complement(1941..2669)
                     /locus_tag="VE567_03915"
     CDS             complement(1941..2669)
                     /locus_tag="VE567_03915"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HYZ48020.1"
                     /translation="MLALAAVGAGAINALAGGGSILTFPALIAAGIPPVSANITNTVA
                     LFPGYIGGVIGQARDLKGQARRLLVLGPVALVGGLLGGILILVSSERLFESLVPWLLI
                     GGCALLGIQDKVRGWLQRRSGALGLGWAVVPVFLAAIYGGYFGAGLSVIFIAVLGLTL
                     DDTLTRLNGLKQALSLAANLSAASLFLGSTRLVWSAALVMAVGSLIGGALGGRLASAI
                     SPKALRAIVMTIGVGVAILFLVRR"
BASE COUNT          467 a          922 c          920 g          444 t
ORIGIN      
        1 ccgggcctgt ggagaagcgg ttcgtcgtca taaagtcgtc accggtccgt cataagcggc
       61 gcgcgaacgt acggagaaat tgcatgggtc acgcggcgac ggtgaaggcg gtgaaagcag
      121 ccgcggttca gagctcggaa ctcaacaagc agggcctgct cgaacgcgct ttcgccttcg
      181 catttcgcgg cctcgtctac gcccagatct gggaagaccc gctggtcgat atggaagcgc
      241 tggcgatcgc gccggacagc cgcgtcgtca cgatcgcgag cggcggctgc aacgtgctca
      301 gctatctgac cgccgacccg gcgagcatca ccgcggtgga cctcaacacg gcccatgtcg
      361 cgctcaacaa gctgaaactg gccgccgccc ggcatctgcc cgatcatgcc agcttccgcc
      421 gctttttcgg cgaagccgat acgtccgcga acatcgatgc ctataagcgc tatgtccgcc
      481 cgcatctcga cgagacctcg ctgcgctact gggaagggcg cgacctgatc ggccggcggc
      541 ggatcggcgg ctttgcgcgc ggcatctaca agcgcggcct gttgggcaat ttcatcggcc
      601 tcgcgcacat cattgccaag ctctacaaga tcgatccgcg cgagctgctg gaagcagaga
      661 ccatcgagga gcagcgcgcg atcttcgagg cgcgcttcgc gccggtgttc gacaagaaat
      721 tcgtgcgttg gctcaccgac cagccggcct cgctattcgg ccttggcatt ccccccgcgc
      781 aatatgaagc actggcgggc gacgacccga acggcatggc cgcggtgctc cgcgcgcggc
      841 tcgctaagct cgcctgcgat ttcgacattc gcgagaatta tttcgcctgg caggcgtttg
      901 gccgcggcta tggcaaggcg ccgaatgcgc cggtgccgcc ctatctcgaa gccgccaact
      961 atcgcgcggt ggtcgatcgc gtggatcggg tcgaggtgcg gcacgtcaac atggtcgaac
     1021 acctccgcca gcagccggcc gcgagcctcg atcgttatat cctgctcgat gcccaggact
     1081 ggatgaatga cgggcagctg accgcgctct ggagcgagat cacgcgcacg gctcgtcccg
     1141 gcgcgcgcgt gctgttccgc acggccgccg aaccgagcct gttgcccggc cgcgtgccgg
     1201 acgcaatcct gtcgcgctgg cgctatgccg aggctcagtc gcgcgacttc actcgccgcg
     1261 atcgttcctc catttatggt ggcgtgcacc tttatctgtt cgagggctga tggacgtagc
     1321 cgcgcggcgg atggacgcga tttatcgcgg ccaacgccat atctatgacc ttacccgcaa
     1381 atattatctg cttggccgcg accggctgat ccgcgaactg gcgccgccag cgggcggatc
     1441 ggtgctggag gtcggctgcg gcacggcgcg aaacctgatc gcagccgcga aggcctggcc
     1501 gcaggcgcgc tgcttcggct tcgatatttc cgccgcgatg ctggagaccg cccgcgcctc
     1561 ggtgcgcaag gcagggctcg acggccgcat ccgccttgca cccggcgacg cgactgtctg
     1621 ggacggcgag gaaatgttcg gggaagcggc gttcgaccgg attttcctgt cctacacctt
     1681 gtcgatgatc ccggattggc gcgcggcgat cgaccaggcg gcgcgggcgt tgcgccctgg
     1741 cggcgaggtg cacatcgtcg atttcggcca gcaggagcgg ctgccccgct ggtggcgcgc
     1801 cgctttgttc gcctggctcg ctcggttcga ggtgacgccg cgcgccgagc tggaagccgc
     1861 cgtgcgcgaa gcggccgcgc ggcacgggtt gcgcgtggat ttcaggccgc tgttccgcgg
     1921 ctatgcctgg agcgcggtcc tcagcgcctg acgaggaaca ggatcgcgac gcccacgccg
     1981 atcgtcatga cgatggcgcg caaggccttg gggctgatcg cgctcgccag ccgcccgcca
     2041 agtgcgccgc cgatcagcga cccgaccgcc attacgagcg ctgcgctcca taccagccgg
     2101 gtcgagccaa ggaagagcga ggcggcagag aggttcgccg ccagggacag cgcttgtttg
     2161 aggccgttga ggcgcgtcag cgtgtcgtcg agcgtcaggc cgagcacggc gatgaagatg
     2221 acgctcagcc ccgcgccgaa atagccgcca taaatcgccg cgaggaatac cggaacgacc
     2281 gcccagccga ggccgagcgc accggagcgg cgctgcagcc agccgcgcac cttgtcctgg
     2341 atgcccagca aggcgcagcc gccgatcagc agccagggga caagcgactc gaacaatctc
     2401 tcgctgctga cgaggatcag gattccacca agcaggccgc caacgagagc gaccggcccg
     2461 agcacgagca gccggcgcgc ctggcccttc agatcgcgcg cttgcccgat tacgccgccg
     2521 atatagccgg ggaacagcgc gaccgtgttg gtgatgttgg cggataccgg cggaatgccc
     2581 gcggcaatca gcgccggaaa ggtcaggatc gacccgccgc ccgccaaggc gttgatcgcg
     2641 cccgcgccga cggcagcaag cgccagcaat gcgagttgag ttgggctcag gccgcgagcc
     2701 tgagttcgag ccggtcccag atttcgctaa gcgcgtcggt caattcgcgc atc
//
LOCUS       DASQVK010000186         4284 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_138510,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000186 DASQVK010000000
VERSION     DASQVK010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4284)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4284)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4284
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138510"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..379
                     /locus_tag="VE567_03920"
     CDS             <1..379
                     /locus_tag="VE567_03920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="murein L,D-transpeptidase catalytic domain
                     family protein"
                     /protein_id="HYZ48021.1"
                     /translation="DMANGRVSSFLVAHGRGSDPQHRGWLERFSNDPGSSATSAGIYL
                     TADEYQGKHGRSMRLKGLDASNSNAEARAVVVHGAWYVSPQIVAEHGKLGRSEGCLAF
                     SEADLPNVLERLGPGRLIIAGKF"
     gene            complement(376..552)
                     /locus_tag="VE567_03925"
     CDS             complement(376..552)
                     /locus_tag="VE567_03925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48022.1"
                     /translation="MAALRKSTLSAELLRVEAGAGPAFISFGRTAMPTASNQSPVPRR
                     YGRTLAAPILVYAG"
     gene            587..3253
                     /gene="ppc"
                     /locus_tag="VE567_03930"
     CDS             587..3253
                     /gene="ppc"
                     /locus_tag="VE567_03930"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008964 - phosphoenolpyruvate carboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0015977 - carbon fixation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HYZ48023.1"
                     /translation="MANDRTISQNPDIRFLGRLLGNVIRHYGGEALYRRTEYIRSVSV
                     DRHRGVADADAIDPGLDALSLDETLAFVRGFMLFTMLANLAEDRQGVAAEPGADVAQA
                     LERLRKEGVSDEAITALLKDALIAPVLTAHPTEVRRKSMIDHRNRIAELMQLRDTGAT
                     ETFEGDPIELAIERQIALLWQTRALRRERLYVADEVETARAYFGDVFLPVLPALYVRW
                     ERALGRRPPSFVRPGSWIGGDRDGNPFVTADSLRLALRGGAETAIAHYLDRLHALGAE
                     LSVSSSLAQVDPEVLALAEASRDDAPARADEPYRRAISGIYARLSASYEALTGHPPPR
                     PTRIAAAPYATPQELSADLRILGRSIGSEGGPLAGPGPLGRLICAVETFGFHMATLDL
                     RQNSAVHERVVGELLAKAGVEADYVALDEEAKVALLLGELDSPRLLATPLADYSDETA
                     SELAIVRAAAEAHAQYGPASITTYIVSMCKSVSDLLEVQILLKEAGLFRPGEAPAIMA
                     VPLFETIADLEAAPAIMRAWFALPGVTDWAKARGRQEVMLGYSDSNKDGGYLTSVWSL
                     HRASEALRDVFAEAGVAMQLFHGRGGAVGRGGGSSFAAIRGQPTGTVQGRIRITEQGE
                     VIAAKYGTPESAAANLEAIAAATLLASLEPPILSTSDKDRFEKAMAELSRAAFAAFRG
                     LVYETEGFRTFFRQMTPIAEIATLKIGSRPASRTQSDAIEDLRAIPWVFSWAQARVML
                     PGWYGAGHALVGFGDIALLREMAAAWPFFAPTLANLEMVLAKSDMGIAARYAGLVEDR
                     AAADAIFGRIRDDWYRTRDALLDVTGQGRLLEKTPALDTSIRLRLPYIEPLNLLQIEL
                     LKRHRAGEDDPRIAEGIQLSINAIATALRNSG"
     gene            3382..3621
                     /locus_tag="VE567_03935"
     CDS             3382..3621
                     /locus_tag="VE567_03935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48024.1"
                     /translation="MLIAVALLQAAAPAQNAASVQPVAAPVQSEAAADAADAQPEPKM
                     KRVCRKVMDSRVNLLSTRQTVCKFVPVAENGTAKR"
     gene            3658..>4284
                     /locus_tag="VE567_03940"
     CDS             3658..>4284
                     /locus_tag="VE567_03940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007706036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HYZ48025.1"
                     /translation="MTEPVLAERDGAILTVTLNLPEKRNPVSDPTVIEALEETLRAAD
                     SDIGVRAVILTGAGSAFSSGGDLKAMKAGTGLRAPVPAQTRRNYREGIQRLPLLFHAL
                     EVPVIAAVNGPAIGAGLDLACMCDVRIAAETAVFAESFVKLGIVAGDGGAWLLPRILG
                     FSKATELALTGETIDAAEALRIGLVSRVVPAAELMAAAREVAAKIAANP"
BASE COUNT          712 a         1400 c         1442 g          730 t
ORIGIN      
        1 cgatatggcg aatggccgcg tctccagctt cctcgtcgcg catggccgcg gctccgatcc
       61 ccagcatcga ggctggctcg agcgtttctc gaatgatcca ggatccagcg cgacttccgc
      121 cggcatctac ctgaccgccg acgaatatca gggcaagcat ggccggtcga tgcggctgaa
      181 ggggctcgac gccagcaaca gcaatgccga agcgcgcgcg gtcgtggttc acggcgcttg
      241 gtatgtcagc ccgcagatag ttgccgagca cggcaagctc gggcgcagcg aaggctgtct
      301 cgcattcagc gaagccgatc tgccgaatgt gctcgaacgg cttggcccgg gccggctgat
      361 catcgccggc aaattctaac cggcatagac gaggatcggc gcggcaagcg tccgtccata
      421 gcgccggggc accggggact gattcgaagc ggtcggcatc gccgttctcc cgaagctgat
      481 gaaggctggg cctgcgccgg cctcgacgcg aagcaattcc gcgctcaatg tggatttgcg
      541 cagtgcagcc atggcgctat gcggacggcc gacacagggg acgcgcatgg cgaacgaccg
      601 cacgatttcg cagaatcccg atatccgctt tctgggccgc ctgctcggca atgtgattcg
      661 ccactatggc ggtgaggccc tttaccggcg gacggaatat atccgctcgg tctcggtcga
      721 ccggcatcgc ggcgtggccg atgcagatgc aatcgatccc ggcctcgatg cgctgagcct
      781 cgacgagaca ctcgcgttcg tgcgcggctt catgctgttc acgatgctcg cgaatctggc
      841 ggaagaccgg cagggcgtgg cggccgagcc gggcgccgac gtcgcccagg cgctcgagcg
      901 attgcgcaag gaaggcgtct ccgacgaggc aatcacggcc ttgctcaagg atgcgctgat
      961 cgcgccggtg ctgaccgcgc acccgaccga agtccgccgc aagagcatga tcgaccatcg
     1021 caaccgcatt gccgagctga tgcaactgcg cgacacgggc gcgacggaga ctttcgaagg
     1081 cgaccccatc gagctcgcga tcgagcggca gattgcactc ctttggcaaa cgcgcgccct
     1141 gcggcgcgag cgactctatg tcgctgatga agtggagacg gcgcgcgcct atttcggcga
     1201 cgtgttcctg cccgtgctgc cggcgctcta tgtccgctgg gagcgcgcgc tgggccgccg
     1261 ccccccgagc ttcgtccgtc ccggatcgtg gatcggcggc gaccgcgacg gcaatccgtt
     1321 cgtaaccgcg gactcgctgc ggctcgcgct gcggggcgga gccgagacgg cgatcgccca
     1381 ttacctggac cggctccacg cgctgggcgc cgaattgtcg gtttcgtcga gccttgctca
     1441 ggtcgacccg gaagtcctcg cgctggccga agccagccgt gacgacgcgc cggcgcgtgc
     1501 ggacgagcct tatcgccgcg caatttccgg catctatgcg cggctgagcg caagctacga
     1561 ggctttgacc ggccatccgc cgccgcgccc gacgcggatc gccgctgcgc cctacgcgac
     1621 tccgcaggaa ctctcggccg acctgcggat tctcggccgc tcgatcggca gcgagggcgg
     1681 gccactggcc ggtcccggtc cgctcgggcg gctgatctgc gcggtcgaga ctttcggctt
     1741 ccatatggca acgctcgatt tacgccagaa cagcgccgtg catgagcgcg tcgtgggcga
     1801 gctgctggcc aaagccgggg tggaagcgga ctatgtcgcg ctcgacgaag aagcgaaggt
     1861 cgccttgctg cttggcgaac tcgacagccc gaggctgctc gcgacacctc tcgccgacta
     1921 ttccgacgag acggcgagcg aactcgcgat cgtgcgcgcg gcggcggaag cgcatgcaca
     1981 gtacgggccg gcctccatca ccacctatat cgtctcgatg tgcaagtcgg tctccgacct
     2041 gctcgaagtg cagatcctgc tgaaggaagc cgggctgttc cgtcccggcg aagcgccggc
     2101 gatcatggcg gtgccgctgt tcgaaacgat cgccgacctg gaagccgcgc ccgcgatcat
     2161 gcgcgcatgg ttcgcgctgc ccggcgtcac cgactgggcc aaagcgcggg gccggcagga
     2221 agtgatgctc ggctattccg actcgaacaa ggatggcggc tatctgacct cggtctggtc
     2281 gcttcatcgg gcgagcgagg cgctgcggga cgtgttcgcc gaagccggcg tcgcgatgca
     2341 gcttttccat gggcgtggcg gtgcggtggg gcggggcggc gggtcttcct ttgccgccat
     2401 ccggggccag ccgacaggca cggtgcaggg ccgcatccgc ataaccgagc aaggcgaagt
     2461 gatcgcggcc aaatatggca cgccggaaag cgcggcggcg aacctcgaag ccatcgcggc
     2521 agcgactctg ctcgcgagcc tggagccgcc gatcctttcg acttccgaca aggatcggtt
     2581 cgaaaaggcg atggccgagc tgtcgcgcgc cgcgttcgcc gcgttccggg ggctggtcta
     2641 tgaaaccgaa gggttccgga ccttcttccg ccagatgact ccgatcgcgg agatcgccac
     2701 gttgaagatc ggctcgcgcc ccgccagccg gactcaatcc gatgcgatcg aggatctgcg
     2761 cgcgattccc tgggtgttca gctgggccca ggcgcgcgtg atgctgccgg gctggtatgg
     2821 cgccggccat gcgttggtcg ggttcggcga tatcgctctg ctgcgcgaaa tggcggccgc
     2881 ctggcccttt ttcgcaccga cgctcgccaa tctcgaaatg gtgctcgcca agtccgacat
     2941 gggcatcgcc gcccgttatg cggggctggt cgaggatcgc gcggcggcag acgcgatctt
     3001 cggccgcatc cgcgacgatt ggtaccgcac ccgagacgcc ttgctcgatg tcacggggca
     3061 aggccggctg ctggagaaga cgccggcgct cgacacttcg atccggctgc gcctgcctta
     3121 tatcgaaccg ctcaacctgc tgcagatcga gctgctaaag cgccaccggg caggcgagga
     3181 cgatccgcgc atcgccgagg gcatccagct gtccatcaat gcgattgcga ccgcgctgcg
     3241 caacagcggc tagtgcgacg gaccacgcaa tatttgcgac gaagcgtttt tctgctgcga
     3301 tgcaacatct catggaactc ttgccgagct gtggcgcttt tatgactctg cctccgtgga
     3361 caagggggag aagacacgat gatgctgatc gcagttgcac tgcttcaagc tgccgcgccg
     3421 gcccaaaacg ccgcaagcgt gcagccggtc gccgcgcccg tgcagtcgga ggccgcagcc
     3481 gatgctgccg acgcccaacc cgagccgaag atgaagcgcg tttgccgcaa ggtgatggac
     3541 tcgcgggtga acttgctttc cacccggcag accgtctgca aattcgtgcc tgttgcggaa
     3601 aacgggacgg cgaagcgcta gctgacaaac cgcgccgggc agtgcaaagc gggcgcgatg
     3661 acagaacctg ttcttgccga gcgtgatggg gcgatcctca ccgtcacgct aaacctgcct
     3721 gagaagcgca atcccgtctc cgatccgacg gtgatcgagg cgctggagga gacgcttcgc
     3781 gccgccgatt ccgatatcgg cgtgcgtgcc gtgatcctga ccggcgcggg atccgccttc
     3841 tcttcgggag gtgacctcaa ggcgatgaag gccggcactg gcctgcgcgc accggtccct
     3901 gcacagactc gccgcaatta ccgcgagggc attcagcgcc tgccgctcct gttccatgcg
     3961 ctggaagtgc cggttatcgc tgcggtgaac gggccggcga tcggcgccgg gctcgatctc
     4021 gcctgcatgt gcgatgtaag gatcgccgcc gaaacggctg tgtttgctga gagttttgtc
     4081 aagcttggca ttgtcgccgg ggatggcggc gcctggttgc tcccgcggat tctcggtttc
     4141 tcaaaggcga ccgagctggc gctgaccggc gagaccatcg acgcggcgga agcgctcagg
     4201 atcgggctcg tctcccgtgt cgttcccgcg gccgagctaa tggccgcggc gcgcgaagtg
     4261 gctgcgaaga tcgccgccaa tccg
//
LOCUS       DASQVK010000187         6694 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_297076,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000187 DASQVK010000000
VERSION     DASQVK010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6694
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297076"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..267)
                     /locus_tag="VE567_03945"
     CDS             complement(<1..267)
                     /locus_tag="VE567_03945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HYZ48026.1"
                     /translation="MRRGWPVAIGDGSAALSLLAIETADPEQLAAFDPDGRADVLLSA
                     SRAETLRLANQREAANPGHAVRIERAPWLDFDTATALADPALDLA"
     gene            complement(300..1094)
                     /locus_tag="VE567_03950"
     CDS             complement(300..1094)
                     /locus_tag="VE567_03950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004209222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HYZ48027.1"
                     /translation="MTDTLKLASWNINSVRFRLGIVEQFLAQEAPDILCLQETKVENG
                     SFPTAAFHALGYRHILLNGQRMHHGVAILSKIPLVEEERRDWQANGEARHVGVRLPNG
                     VRLENVYVPAGGDIPDRELNPKFGQKLDFLARMTDWSASVRVPTIMVGDFNVAPLECD
                     VWSHKQLLDVVSHTPIEVETLGKLQAAHDWVDLGRRFVPAPERCFTWWSYRAKDWAAS
                     DRGRRLDHMWASPELAQHAVSHSVHEPCRGWLKPSDHVPLVTEFAF"
     gene            complement(1285..1899)
                     /locus_tag="VE567_03955"
     CDS             complement(1285..1899)
                     /locus_tag="VE567_03955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA];
                     GO_process: GO:0044874 - lipoprotein localization to outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein carrier protein LolA"
                     /protein_id="HYZ48028.1"
                     /translation="MIFRPAAFAVTAAFALAAPAVAQPGMVKRIQEHLRGVQTMTADF
                     VQTDRAGKRLSGTLTLKQPGKIRFQYEPGVPILVVSDGRALNFIDYQVKQVSRWPIGG
                     SPLEILLNPKRDLSRVARVVPSASPGVITVLARDPQRPQFGSITMAFTENPGAPGGVM
                     LEGWVALDAQNNRTTVRLTNQRLNVPVDETAFQWDDPRPRKNKG"
     gene            complement(1969..4275)
                     /locus_tag="VE567_03960"
     CDS             complement(1969..4275)
                     /locus_tag="VE567_03960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HYZ48029.1"
                     /translation="MATRVAEEEPSWREAIARGFARSWALTGAIALAAAAFLLGLALV
                     SYHPSDPALNTAAGGASQNWVGDAGAWIADLLLSLFGPAIGLLLPLILVMALRLWHDR
                     FVGRWKRNLPLALLGLTLVGSALALFREAAVPGLPGGLGGAVGFLGAKLFGLGLAAIP
                     GEAARWWTQTGTMLVIGLGGLALWAMSLELDELERDWLFRRRDLTDDGEAPRPIKVAK
                     PPKPVVERRKPVEVDDRPPPVISVPDRKPGEKKPAAAPVQTSFDLRDRFTLPPLDLLK
                     PAPPSSGGPLDKAALERNARLLESVLDDFHVKGQIVEVRPGPVVTMYELEPAAGIKAS
                     RVIQLADDIARNMSALSARVATIPGRSVIGIELPNQKREAVVLHELVGAPAFEEQGGS
                     LPIILGKNIAGDPVIADLAPMPHLLVAGTTGSGKSVGLNAMILSLLYRLTPDQCRLIM
                     IDPKMLELSIYDDIPHLLSPVVTEPPKAIRALRWAVEQMEERYRMMASVGVRSLASFN
                     DKVRVAKAKSQPLGRRVQTGYDAETGQPIYEEEQLSFELLPQIVVVVDELADLMMTAG
                     KEVEFLIQRLAQKARAAGIHLIMATQRPSVDVITGVIKANLPTRISFQVTSKIDSRTI
                     LGEQGAEQLLGKGDMLYMPGGKQIVRVHGPFVSDDEVRAVADHWRAQGKPDYIQAVTE
                     EPEDGQFEFDGAPKGDDSPEDQLYRRAVQIVAESQKASTSYVQRQLRIGYNSAARLIE
                     RMEKDGKVSRPDHVGRREVLIDTNGEPV"
     gene            4400..5605
                     /locus_tag="VE567_03965"
     CDS             4400..5605
                     /locus_tag="VE567_03965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiH/UbiF/VisC/COQ6 family ubiquinone
                     biosynthesis hydroxylase"
                     /protein_id="HYZ48030.1"
                     /translation="MQSDVIILGGGLVGLTLALALDAHGLSSTIVDPANSDAVLAPGF
                     DGRASAIASASWNMLQAIGVGARLEGRGCPIAAIRVSDGLRPGVLDFEPASDDGPLGI
                     MFENRLLRQVLHAAAAEAKNVTLLMPARAAETVRSEHGVAVQLDDGRQLKAPLLIGAE
                     GRNSPTRAAAGINSARWHYDHIAIIAAVEHEKPHENVAYEIFYPTGPFAILPMLPGNR
                     SALVWSVAKNDAPGYLKLGPRGLVAELEKRMGGMLGRLELVAPLSSFPLGFHHAGRIT
                     DMRLALVGDAAHGIHPIAGQGLNLGLRDVAALTEVLVEGARLGLDLGDAQLLKRYERW
                     RSLDTFLVASSTDGLARLFGIPGKAASAVRRFGLSAVQQIPPLKSFFMAEARGEYGDK
                     PKLLAGLTV"
     gene            complement(5618..5797)
                     /locus_tag="VE567_03970"
     CDS             complement(5618..5797)
                     /locus_tag="VE567_03970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HYZ48031.1"
                     /translation="MMDQKLIDILVCPITRTKLRYDEKHQELVSEAAGLAYPIRDGVP
                     VMLPEEARRLDTPPS"
     gene            complement(5794..6435)
                     /locus_tag="VE567_03975"
     CDS             complement(5794..6435)
                     /locus_tag="VE567_03975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HYZ48032.1"
                     /translation="MGTVTRLSIFPLGGALLFPRMQLPLHIFEPRYRALVSDAMARDR
                     RIGMIQPRPAGTPPAARPDDPPLFDIGCVGRIAHVEALEDGRYNIVLEGLARFRLLSE
                     LSVTTPFRQIEAELEEDEPAEPLAIAQRAALEEESRRYAEVQGYAVDWNAVSRLDDES
                     LVNGIAQIAPFDVAAKQALLEAPSLEERAELIIQLMQFFGRHGGDGDDPVTLQ"
     gene            complement(6435..>6694)
                     /locus_tag="VE567_03980"
     CDS             complement(6435..>6694)
                     /locus_tag="VE567_03980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYZ48033.1"
                     /translation="DLAALQRRVDTNPDDLESRYELAGGLMAAGDRDGAADQLLAIIK
                     SDKDWNEGAARSRLLKLMEVAGLEDPWTSATRRRLSALLFT"
BASE COUNT         1105 a         2232 c         2239 g         1118 t
ORIGIN      
        1 cgcgaggtcg agcgccgggt ccgccagcgc ggtcgcggtg tcgaagtcga gccagggcgc
       61 gcgctcgatg cgcaccgcat ggcccggatt ggccgcctcg cgctggttgg cgagcctcag
      121 cgtctcggcc cggctcgccg agagcagcac atcggccctg ccgtccggat cgaaagcggc
      181 gagctgctcc gggtccgccg tctcgatcgc gagcagcgac agcgccgcgc tgccatcgcc
      241 gatcgcgacc ggccagccgc ggcgcatcgc gtcgatcgcg cgcgcggcgg cctgggtcgt
      301 caaaaggcga actccgtcac cagcggcaca tggtcggagg gcttgagcca cccccggcac
      361 ggctcatgca ccgagtggct gaccgcatgc tgcgcaagct cggggctcgc ccacatatga
      421 tcaagccgcc gcccgcggtc ggacgccgcc cagtccttgg cccgatagct ccaccaggtg
      481 aagcagcgct ccggcgcggg cacaaagcgc cggccgagat cgacccaatc atgcgcggcc
      541 tggagcttgc ccaaagtctc gacctcgatc ggggtgtggc tgaccacgtc gagcaattgc
      601 ttgtggctcc acacatcgca ttcgagcggc gccacgttga aatcgccgac catgatcgtc
      661 ggcacgcgca cgcttgcgga ccagtcggtc atgcgagcga ggaaatcgag tttctggccg
      721 aatttcgggt tgagctcgcg gtccggaatg tcgccgccgg ccggcacata gacattttcc
      781 aaccgcacgc cgttcggcag ccgcacgccc acatgccgcg cctcgccatt ggcctgccag
      841 tcgcgccgct cctcctcgac cagcgggatc ttgctgagaa tagcgacgcc gtgatgcatg
      901 cgctgcccgt tcagcaggat gtgccggtag ccgagcgcgt ggaaggcggc ggtcggaaag
      961 ctgccattct cgaccttggt ttcctgcagg cacaggatgt cgggtgcttc ctgcgccagg
     1021 aattgctcga cgatgccgag ccggaagcga acggaattga tgttccagga agcgagcttg
     1081 agtgtgtcgg tcacgggctt cgacttaggg gcgcactcca gacaaggaaa ggcccccgct
     1141 ccgggggcat ggagcgaggg ccgaccgagc gttcgtcacg ctggtgggag ggagctttcc
     1201 gggcgggcaa cagggggaaa tcccgccaaa agccctctcc gcgttttgcc cgtaaccctg
     1261 caaacctgtc gcgaagatga acaatcagcc tttatttttc cttggacgcg gatcgtccca
     1321 ttggaaggcc gtctcgtcga cggggacgtt cagccgctgg ttggtgagac gcaccgtggt
     1381 gcgattgttc tgcgcatcga gcgccaccca gccttccagc atcacgccgc caggcgctcc
     1441 cggattttcg gtaaaggcca tggtgatcga accgaattgc ggccgctggg gatcgcgggc
     1501 gagcacggtg atcacgcccg gcgaggcgga cggcaccacg cgcgccactc gcgagaggtc
     1561 gcgcttggga ttgagcagaa tctccagcgg cgatccgccg atcggccagc gcgatacctg
     1621 cttcacctga tagtcgatga aattgagcgc ccgcccatca ctcacgacga gaatcggcac
     1681 gcccggttca tattggaagc ggatcttgcc cggctgcttg agcgtaaggg tgccgctgag
     1741 ccgtttgccg gcgcggtcgg tctgcacgaa atccgccgtc atcgtctgca cgccgcgcaa
     1801 atgctcctgg atgcgcttca ccatgcccgg ctgcgcgacc gcgggggcag ccagcgcgaa
     1861 agcggcggtg acggcaaaag cggcgggtcg aaagatcatc aaatgctccg gaaaaccacg
     1921 ccggtgttag cgcgctgcgt tgaacgcgga ctgaacccct atggctcctc agaccggctc
     1981 gccattggtg tcgatcagga cttcgcggcg gccgacatgg tcggggcggc tgaccttgcc
     2041 gtccttttcc atccgctcga tcagccgcgc ggcgctgtta tagccaatgc ggagctgacg
     2101 ctggacatag ctggtcgagg ctttctggct ctcggcgacg atctgcactg cccggcgata
     2161 gagctgatcc tcggggctgt cgtcgccctt gggcgcgccg tcgaactcga actggccgtc
     2221 ctccggctct tcggtgacag cctggatgta atcgggcttg ccttgcgcgc gccaatgatc
     2281 ggcgactgca cggacttcgt cgtccgagac gaagggcccg tgcacgcgca cgatctgctt
     2341 gccgccgggc atgtagagca tgtcgccctt gcccagcagt tgctcagcgc cttgctcgcc
     2401 caggatcgtc cggctgtcga tcttggaggt gacctggaag gaaatacggg tgggcaggtt
     2461 agccttgatc acgccggtga tcacatccac cgacggccgc tgcgtcgcca tgatcaagtg
     2521 aatgccagcc gcgcgcgctt tttgcgcgag gcgctggatc aggaactcca cttccttgcc
     2581 cgcggtcatc atcaggtcgg cgagttcgtc gaccacgacc acgatttgcg gcagcagctc
     2641 gaagctgagc tgctcttcct catagatcgg ctggcccgtc tcggcgtcat agccggtctg
     2701 gacgcgccga ccgagcggct ggctcttggc cttggcgaca cggaccttgt cgttgaagct
     2761 ggcaaggctt cggacgccga ccgacgccat catccggtag cgctcctcca tctgctcgac
     2821 cgcccagcgc agcgcgcgga tcgccttggg cggttcggtc accactggcg agagcagatg
     2881 cggaatatcg tcatagatgc tgagctccag catcttgggg tcgatcatga tcagccggca
     2941 ctggtccggg gtcagccggt agagcagcga caggatcatc gcgttaaggc cgaccgactt
     3001 gcccgagccg gtggtgccgg cgacgagcag atgcggcatc ggcgccaggt cggcgatgac
     3061 ggggtcgccg gcgatattct tgcccaggat gatcggcagc gaaccgcctt gttcttcgaa
     3121 agccggcgcg ccgaccagct cgtgcagcac caccgcctcg cgcttctggt tcggcagctc
     3181 gatgccgatg acgctgcgcc ccggaatggt tgcgacgcgc gccgacagag cggacatgtt
     3241 gcgggcgatg tcgtcggcga gctggatcac tcgactcgcc ttgatgccgg cggcgggctc
     3301 cagctcatac atggtgacga ccgggccggg tcgaacctcg acgatctggc ccttcacatg
     3361 gaaatcgtcg agcacgctct cgagcagccg cgcgttgcgc tcgagcgcgg ccttgtcgag
     3421 ggggccgccg ctcgaggggg gcgccggctt caacaggtcg agcggcggca gcgtgaagcg
     3481 gtcgcgcaga tcgaagctgg tctggactgg ggcggcagcg ggcttctttt cgcccggctt
     3541 gcggtcggga accgaaatga ccggcggcgg gcgatcgtcg acttcgacgg gcttgcgtcg
     3601 ctcgaccacg ggcttgggcg gcttggcgac cttgatcgga cgaggtgcct caccatcgtc
     3661 ggtcagatcg cggcggcgga acagccagtc gcgttccaac tcgtcgagct ccaggctcat
     3721 cgcccagagc gcgagcccgc cgagcccgat cacgagcatc gtacccgtct gcgtccacca
     3781 gcgcgcggct tcgccgggaa tggcggccag cccgaggccg aacagcttcg cgccgagaaa
     3841 gccgaccgcg ccgcccaggc ctccgggaag gccgggaacg gctgcctcgc gaaaaagggc
     3901 gagcgccgag ccgaccaaag tcaggcccag cagcgccagc ggcaggttgc gcttccagcg
     3961 cccgacgaag cgatcgtgcc agaggcgcaa cgccatgacc aagatcagcg gcagcagcag
     4021 tccgatcgcc ggcccgaaca gcgagagcag caggtcggcg atccaggcgc ctgcatcgcc
     4081 gacccaattc tgcgatgcgc cgccggcggc cgtgttcagc gccggatcgc ttggatgata
     4141 gctgaccagc gccaggccca gcaggaaagc ggcggccgca agcgcaatcg cgccggtcag
     4201 cgcccagctc cgtgcgaagc cgcgcgcaat ggcctcacgc cagctcggct cctcttctgc
     4261 gacccgtgtt gccactggtt cccccggctt tgtgcgcgaa atgttcttcg gcgctaattc
     4321 gcttgtgagg gactccgcgt caagcgaagc ttgtcccgac cctctaggct cgccgtggcg
     4381 gcgggtttaa ggaggcgcca tgcagagcga cgtgatcatt ctcggcggcg ggctggtcgg
     4441 cctcactttg gcactggcgc tcgacgccca cgggttgagc agcacgatcg ttgatccggc
     4501 caattccgat gccgtgctcg ccccgggctt cgacggccgc gcctcggcga ttgccagcgc
     4561 gagctggaac atgctccagg cgatcggggt cggcgcgcgg ctggaggggc ggggctgccc
     4621 gatcgcggca atccgcgtca gcgacggcct ccggcccggc gtgctcgatt tcgagccagc
     4681 ctccgatgac ggcccgctcg gcatcatgtt cgaaaaccgg ttgctacggc aggtgctgca
     4741 tgccgccgcg gcggaggcga aaaacgtcac gctgctgatg cccgcgcgcg ctgccgagac
     4801 ggttcgcagc gaacacggcg tggcggtgca actcgacgac gggcgccaac tcaaagcgcc
     4861 gctgctgata ggcgcggagg gccgcaattc gccgacgcgc gcggcggccg gcatcaattc
     4921 ggcgcgttgg cactatgatc acatcgcaat catcgccgca gtcgagcacg aaaagccgca
     4981 cgagaacgtg gcttatgaga ttttctatcc caccggcccg ttcgcgatcc tgccgatgct
     5041 gccgggcaac cgctcagcgc tcgtatggtc ggtcgcgaag aacgacgccc ctggttattt
     5101 gaagctcggc ccgcgcggct tagttgccga gctcgaaaag cggatgggtg gcatgctggg
     5161 gcggctggag ctggtcgcgc cgctttcgag cttcccgctc ggcttccacc atgccgggcg
     5221 gatcaccgac atgcggctgg cgctggtggg cgacgcggca cacggcatcc atccgatcgc
     5281 cgggcaaggc ctgaatctgg gcctgcgtga cgtagccgcg ctcaccgaag tcctggtcga
     5341 aggcgcacgg ctgggcctgg atctcggcga cgcgcaattg ctgaagcgtt atgaacgttg
     5401 gcggagcctc gacaccttcc tggttgcgtc ctcgaccgac ggtcttgcgc gcctgttcgg
     5461 aattcccggc aaagcggcct cggcggtgcg ccgtttcggc ctctccgccg tgcagcaaat
     5521 cccgccgctc aaaagcttct tcatggccga agcccgcggc gaatatggcg acaagccgaa
     5581 gctgctcgcg ggcctgacgg tctagagccc aaacggatca ggagggcggc gtatccagcc
     5641 gccgcgcctc ttccggcagc atcaccggca cgccatcgcg gatcgggtag gcaagaccgg
     5701 ctgcctccga cacaagctcc tggtgctttt cgtcgtagcg cagcttcgtc cgcgtgatcg
     5761 ggcagacgag gatgtcgatc agcttctggt ccatcattgc agcgtcaccg gatcgtcgcc
     5821 gtcgccgcca tgccggccaa agaattgcat cagctggatg atcaattcgg cccgctcctc
     5881 cagactcggc gcttccagca gcgcctgctt ggcggcaacg tcgaagggcg cgatctgggc
     5941 gatgccgttg acgagcgact cgtcgtcgag gcgcgacacc gcgttccagt cgacggcata
     6001 gccctgcacc tcggcgtagc gccgcgattc ctcttccagc gccgcgcgct gcgcaatggc
     6061 cagcggctcg gctggctcgt cttcctccag ctccgcctcg atctggcgga acggcgtagt
     6121 gaccgagagc tccgagagca gccggaagcg ggcgaggccc tccagcacga tattatagcg
     6181 cccgtcctcc agtgcctcga catgcgcgat ccggccgaca cagccgatgt cgaacagcgg
     6241 aggatcgtcg gggcgcgcag ccggcggcgt cccggcgggt cgcggctgga tcataccgat
     6301 acgccgatca cgcgccatcg cgtcgctgac gagcgcgcgg tagcgcggct cgaaaatgtg
     6361 cagcggcaat tgcatgcgcg ggaaaagcag cgctccgccg agcgggaaaa ttgacagccg
     6421 ggtgacggtt cccatcaggt gaacagcagc gcagacaagc gccgccgcgt cgccgaggtc
     6481 cagggatctt cgagcccggc cacctccatc agcttcaaga ggcgcgatcg agcggccccc
     6541 tcgttccaat ccttatccga cttgatgatc gcgagcagct ggtcggcggc gccgtcccga
     6601 tcgcctgcgg ccatcaggcc gccggcgagc tcgtagcgcg attcgagatc gtcgggattg
     6661 gtgtcgaccc ggcgttgcag ggcggcgagg tcgt
//
LOCUS       DASQVK010000188         9506 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_455465,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000188 DASQVK010000000
VERSION     DASQVK010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 9506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9506
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_455465"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1097)
                     /locus_tag="VE567_03985"
     CDS             complement(<1..1097)
                     /locus_tag="VE567_03985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007677335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA acetyltransferase"
                     /protein_id="HYZ48034.1"
                     /translation="MTTSDDACRIPVLIGIGEVLDRPEVDVNGLDAIELMLVALKAAE
                     ADVGASVLDKLDWLGVEDEISFPVPAPHEILAAKLAARPRQIVKTLEASGDGPIQLIN
                     DVANLIGSGEVSLAAAVGGEALRTAAKRAQADIAAGREPPKSSVAEVAAANARPLARK
                     HGLFTPIDVYPLYENAARAAWGQTVAEGQAESGAIWEGFSRVAAANPYAWIRKHVTAQ
                     AIIEPNADNRMVSFPYTKLMVANSSVNMGAAVIVASLAKARELGVPEDRIVYIGAGAA
                     AHEDDDFLRRADYTHSPSLDATINAALSLNGLKAGDIDHVELYSCFPIVPKLARRALD
                     WPLERPGTVYGGLTFGGGPIGNCMMHAAARMA"
     gene            complement(1081..1380)
                     /locus_tag="VE567_03990"
     CDS             complement(1081..1380)
                     /locus_tag="VE567_03990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48035.1"
                     /translation="MVALDRGGSLGPHYALAILYLICLVSYVDRQVMALLAPDIQRDL
                     GLKDWQLGFVSGTSVALFYGFMGIPLSYIADRRSRTLLAACLPELSGGDLHDDLR"
     gene            complement(1525..1911)
                     /locus_tag="VE567_03995"
     CDS             complement(1525..1911)
                     /locus_tag="VE567_03995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48036.1"
                     /translation="MIWPLKPQAPTAWTRLFTAPAKALRPNRTAARVGSLLVGGRILC
                     LGRDRAGEHRQWNPPGGHGRFFPPLMCTVYRRALIVTAPQAPLLSIVTFIMFPSGHER
                     QLFPRDAFRSMLDLVRRLARRETVVS"
     gene            2053..2601
                     /locus_tag="VE567_04000"
     CDS             2053..2601
                     /locus_tag="VE567_04000"
                     /inference="COORDINATES: protein motif:HMM:NF024844.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase N-terminal
                     domain-containing protein"
                     /protein_id="HYZ48037.1"
                     /translation="MSDENQPRDDTGLGLNFGTYEEALTWIGRSTEPSEGEFAVNVPM
                     IRYYCSAMEDANPSYWDDDFAKQHWGGAVAPPGMLQTWILPMQWKPEGKRTVSLMAAK
                     VPLPGDKPINVVTDFEFFEPVREGDRLVMTDRLEAISEEKTTRVGTGHFITSVSEYRN
                     QAGTLLARCTNTLFRYRRQGLG"
     gene            2598..3032
                     /locus_tag="VE567_04005"
     CDS             2598..3032
                     /locus_tag="VE567_04005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48038.1"
                     /translation="MKFHQLYAGDVTTEAVVPVCAMDVTYKTAIMHVAAGWDYMPGHH
                     DPAYAIAQGTDNIYLNTLFHQSFIDRTLTDWAGPLTFLVRRKMSMRDQIYPGDHIEGH
                     AKVLAVREGQKGEALVDLSVVIRTPRGDACVAECTIRLPGRP"
     gene            3029..4555
                     /locus_tag="VE567_04010"
     CDS             3029..4555
                     /locus_tag="VE567_04010"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HYZ48039.1"
                     /translation="MTDATLTAAGWCRRLGTSHPRDTAVIDGAREWSFAELDARSERL
                     AEALVAAGIRQGDRVAALLHNGAPLIELYFATAKARAILLPLNWRLAPAELDYIVDDA
                     APSLLFVSEELAELGAGIATSAQRVTVADGVVGNDPYEAFLAGPGAPLGVAEPDDVWI
                     MLYTSGTTGRPKGCLLDQRGQIISALASAVLWRARPGDRLALALPLFHVGGLGILFAH
                     MIAGATTVIAPRIFPPEVALRLLSERGCTRSAIAPQLYSGLLEVQRQQAVPLHLQLLS
                     MGGGMHEPAQVAAVRDCLGTDILLGYGQTEAGNFISYLTAEEQLARPRSCGRAMMHLD
                     IAIVDENGNSVPPGNSGELVVRGPSVLRGYWNQPEATESALRGGWLHTGDLFTIDEEG
                     YLTLLGRLKELIKTGGENVYPKEVEAALLAHPCIVDCSVFGVPHEHWGEAVKAAIVLA
                     PGATLSAAEVVKWCREHIAGYKRPRYVEFMNALPRSDAGKLLMRELRARPVTSDQATD
                     "
     gene            complement(4681..5592)
                     /locus_tag="VE567_04015"
     CDS             complement(4681..5592)
                     /locus_tag="VE567_04015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007710807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYZ48040.1"
                     /translation="MDWDDLRIFLAVVRGRTLIAAGRQLSLDATTVARRLARFEERIG
                     RSLFEVTPNGHILTSRGNELLGHAQAMESAALAALEGSASAEQPTGTIRVSVSEGFGT
                     WVIAPNLKSFSAKHPDIAVELVASTGFLNPSRREADLAIMLARPKRGPLIASKLTDYR
                     LGLYVATEPDDPAPIVELNSAPLVGYVPDLIYAPELDYLNELAPGLRPTLTSTSVNAQ
                     AALIASGAGVGVLPCFIGDADPRLTRIRRKHFSLQRSFYLVVHRDLRRIRRVSLFVEW
                     LQNMVTGLKPLLQGERSDKHVLPPSTL"
     gene            5693..7189
                     /locus_tag="VE567_04020"
     CDS             5693..7189
                     /locus_tag="VE567_04020"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010187672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018478 - malonate-semialdehyde
                     dehydrogenase (acetylating) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HYZ48041.1"
                     /translation="MRDIDHFIVGGAGGSASRFGDVFDPNSGRVQARVRLGTAEVLER
                     AIAAAQKAQPGWAATNPQRRARVMFNFKALVEKNMDALAHTLSSEHGKVIADAKGDIQ
                     RGLEVIEFCCGIPHALKGEYTQGAGPGIDVYSMRQPLGLGAGITPFNFPAMIPMWMFG
                     VAIATGNAFLLKPSERDPSVPVRLAELLLEAGAPEGILQVVHGDKEMVDAILDHPAIS
                     AVSFVGSSDIAHYVYRRGVEAGKRVQAMGGAKNHGIVMPDADLDQVVKDLTGAAFGSA
                     GERCMALPVVVPVTDQTANELREALIPAIASLRVGVSTDPDAHYGPVVNAAHKQRVEN
                     WIQTGIDEGAELVVDGRGFSLQGHEQGFFIGPSLFDHVKPAMKSYQEEIFGPVLQIVR
                     APDFETALRLPSEHQYGNGVAIFTRNGHAAREFAHRVNVGMVGINVPIPVPVAYHSFG
                     GWKRSAFGDINQHGMEGVRFWTKTKTITQRWPDGEAHGDNAFVIPTMG"
     gene            7197..7592
                     /locus_tag="VE567_04025"
     CDS             7197..7592
                     /locus_tag="VE567_04025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003041387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HYZ48042.1"
                     /translation="MTERQRAASASPYEESIGFSRALRVGERILVSGTAPVEADGSST
                     PGDAEAQAERCFDIIVGAIRALGGTRADIVRTRMFITDPADAEAVGRAHGRRFGDVRP
                     AATMVVVSALLRPEWRVEIEAEAVLGAAA"
     gene            7589..8734
                     /locus_tag="VE567_04030"
     CDS             7589..8734
                     /locus_tag="VE567_04030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016745397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYZ48043.1"
                     /translation="MTQQFDLTDDQRQIQEMARKFTADAITPFAAEWDEKHVFPRDTI
                     KAAAELGFASIYVSEEMGGIGLGRLEAALIMEAMAYGCPSTSAFISIHNMASWMIDRF
                     GSDAVKRKYLPSLVTMDRIASYCLTEPSSGSDAAALKTKAVLDGDHYVVTGSKAFISG
                     GGTNEIYVTMVRTGVEGPKGITCLVIEKDMPGVSFGANERKLGWHSQPTAQVNFDGVR
                     VPVENRVGAEGEGFRIAMMGLDGGRLNIGACSLGGAQRCLDEAVKYTRERKQFGTAIA
                     DFQNTQFMLADMETELQAARMLLYAAAAKVTANAPDKTRFAAMAKRFATDTGSSVVDR
                     ALQLHGGYGYLMDYPIERFWRDLRVHSILEGTNQVMRMIVGRELTRQ"
     gene            8731..>9506
                     /locus_tag="VE567_04035"
     CDS             8731..>9506
                     /locus_tag="VE567_04035"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010216385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HYZ48044.1"
                     /translation="MNEEILAFKEGHVGRIRLNRPQAIHALTTGMCRAILDKLEEWRT
                     TDAVRAVLFDHAGGRGFCAGGDIRMLADSGAKDGAEAREFFHAEYQMNERLFTYVKPT
                     AAFMDGITMGGGVGIAMPCKFRVATENTRFAMPETGIGLFPDVGGGWYLSRLPGRTGQ
                     FLALTGARLDGAECLLLGLATHYVPAAALEEVKARIAADPSALEAILDAYDAEPPPAR
                     IEANLEQIDRLFASDRLEDIYAALEADGSEWAQKELATLRT"
BASE COUNT         1709 a         2948 c         3191 g         1658 t
ORIGIN      
        1 gccatccgcg ccgcggcatg catcatgcag ttgccgatgg gcccaccccc gaaggtgagt
       61 ccgccataga ccgtgccggg cctttccagc ggccaatcga gcgcacgccg cgcgagcttg
      121 ggcactatcg ggaagcagga atagagctcg acatggtcga tgtcgccggc cttgaggcca
      181 ttgaggctga gcgcggcatt gatggtggca tcgagacttg gcgagtgggt atagtctgcg
      241 cggcggagga aatcgtcatc ctcatgcgca gctgcgcccg cgccgatata aacaatccga
      301 tcttccggca cgccgagctc gcgcgccttg gcaagactgg cgacgatcac cgcggcaccc
      361 atattgacgc tggaattcgc gaccatcagc ttggtgtaag ggaagctcac catgcgattg
      421 tccgcgttcg gctcgatgat ggcttgcgcg gtgacatgct tgcggatcca cgcataggga
      481 ttggcggctg ccaccctgga gaatccctcc cagatcgcgc cgctctccgc ctggccctca
      541 gcgaccgtct ggccccaggc ggcgcgcgcg gcattctcgt acagcggata gacgtcgatc
      601 ggcgtgaaca ggccgtgctt gcgcgcaaga ggcctggcat tggcggcggc gacctccgcg
      661 accgagctct tcggcggctc gcggccggcg gcgatatcgg cctgggcgcg cttggccgcg
      721 gtgcgcagcg cctccccgcc gacggcagcg gccaggctga cctcgccgct gccgatcaga
      781 ttggccacgt cgttgatgag ttggatcggc ccgtcgccgc tggcctccaa ggtcttgacg
      841 atctgcctgg gccgggccgc aagctttgca gcgagaattt catgcggagc gggaaccggg
      901 aaggagattt cgtcctccac gccgagccag tcaagcttgt cgagcacgga tgcgcccaca
      961 tccgcctcgg ccgctttcag cgcgaccagc atgagctcga tcgcgtctaa gccgttcacg
     1021 tccacttcgg ggcgatctag cacctcgccg atgccgatca gaacggggat gcggcaggcg
     1081 tcatcggagg tcgtcatgca gatcacctcc tgaaagttca ggcaggcaag cggctaacag
     1141 cgtgcggctg cgccggtcgg cgatatagga cagcggaatg cccatgaagc cgtagaacag
     1201 cgcaacgctc gtgccggaga cgaaaccaag ctgccagtcc ttgaggccca ggtcgcgctg
     1261 aatgtcgggc gccagcagcg ccatgacctg tcggtccaca tagctcacca agcaaatcag
     1321 atagaggatc gccagtgcat agtgcgggcc caacgatcca ccgcgatcaa gcgccaccat
     1381 ccactccaat ccattatgtt tgtaatgcta aacgccggcc cgcgatcgcg tcaaacttcg
     1441 gacagctaaa atgcccctgt tcattgtgct aggcatcgta cctgaaacac agcggaagtg
     1501 acggccagtt gagagctaaa cgcctcaaga aaccacggtt tctcgtctcg ctaatcgtct
     1561 aacaagatcc aacatcgagc ggaacgcgtc gcgcggaaac agttgacgtt catgccccga
     1621 tggaaacatt atgaatgtaa caattgaaag cagcggcgct tgcggcgcgg tgacaatcag
     1681 cgcccggcga taaacggtgc acatcaaggg agggaagaat cggccatgac cgcccggagg
     1741 gttccattgc ctgtgctcgc ctgcccggtc gcggcccagg cacaggatgc gcccgccgac
     1801 cagcaagcta ccgacgcggg cggcggttct gtttggccgc aacgccttcg ccggcgcggt
     1861 gaataatcga gtccaagcgg tcggagcttg aggtttcagc ggccagatca agggacagat
     1921 cagcaatctc ggcccgcacg agtggcgcgc cgcggtcaac gtgccgctgg tcaggacagg
     1981 ccggcgatgc gcgccccggg gcgcaccagc gacaactgag cccgtctaac tcaaaagtgc
     2041 tataggattg cgatgagcga cgaaaaccag ccacgcgacg acacaggcct tggccttaat
     2101 ttcggtacat atgaggaagc gctgacctgg atcggccgct cgaccgagcc gagcgagggg
     2161 gagttcgcgg tcaacgtgcc gatgatccgc tactattgct cggcaatgga ggacgccaat
     2221 ccgagctatt gggatgacga tttcgcgaag cagcattggg gcggcgcggt ggcgcccccc
     2281 ggcatgctgc agacctggat cctcccgatg caatggaagc cggaggggaa gcgcaccgtt
     2341 tcgttgatgg ccgcgaaggt gcctctcccg ggcgacaagc caatcaacgt cgttaccgat
     2401 ttcgagttct tcgagccggt gcgcgaaggc gaccggctgg tcatgacgga ccgcctggaa
     2461 gcgatttccg aggagaagac cacccgcgtc ggcaccggtc atttcatcac ctcggtgagc
     2521 gaataccgta atcaggccgg cactctgctc gcccgttgca ccaacacact gttccgttac
     2581 aggaggcagg gactaggatg aaattccatc agctttacgc tggcgacgtg accaccgaag
     2641 cggtggtgcc ggtgtgcgcc atggatgtca cctacaagac cgcgatcatg catgtggcgg
     2701 cggggtggga ctatatgccc ggccatcatg accccgccta tgcgatcgcg caggggaccg
     2761 acaacatcta tctcaacacg ctctttcatc agagcttcat cgatcgcacg ctgactgact
     2821 gggcgggtcc tctgaccttc ctcgtgcgcc gcaagatgtc gatgcgcgac cagatctacc
     2881 caggcgatca tatcgagggg catgccaagg tgctcgcggt gcgcgaaggc cagaaaggtg
     2941 aggcgttggt cgacttgagc gttgttattc gcactccgcg cggggatgcc tgcgtggcgg
     3001 aatgcaccat tcgcctgccc ggccggccat gaccgacgca actctcactg cggcgggctg
     3061 gtgtcgccgg ctggggacga gccacccgcg cgataccgcc gtgatcgatg gtgcgcgcga
     3121 gtggagcttt gcggagctcg atgcccgttc ggagcggctg gccgaggcgc tggtcgctgc
     3181 gggcatccgc cagggcgatc gcgtggcggc cctgctccat aatggcgcgc cgctgatcga
     3241 gctctatttc gcgacagcca aggcgcgggc gattttgctt ccgctcaatt ggcgtctcgc
     3301 accggccgag ctcgactata tcgtcgacga cgccgccccc tcgctgctgt tcgtctcgga
     3361 agagctggcg gaattgggcg cgggaatcgc gacaagtgcg caacgcgtca cggtcgccga
     3421 tggcgtcgtc ggcaacgatc cctatgaggc ttttctagcc ggccccggcg cgccgctcgg
     3481 cgtcgccgaa cctgacgatg tctggatcat gctgtacacc agcggcacca ccgggcgccc
     3541 aaagggttgc ctgctcgacc agcggggcca gattatctcg gcgcttgcct cagcggtgct
     3601 gtggcgcgcg cggccgggcg atcggctggc gctggcgctg ccgctcttcc acgtgggggg
     3661 cctcggcatc ttgttcgccc atatgatcgc gggcgcgaca acggtgatcg cgcctcgcat
     3721 ctttcctccc gaggtagcgc tacgccttct gtccgaacgg ggctgcaccc ggtccgccat
     3781 cgcgccgcag ctctattctg gactgttgga ggtgcagcgg cagcaggctg tgccgctgca
     3841 cctacagctc ttatctatgg gcggcggcat gcatgagccg gcgcaggtgg ctgcagtgcg
     3901 cgattgcctc ggcaccgaca tcctgcttgg ctatggccaa accgaggcgg gtaacttcat
     3961 cagttacttg accgcagagg agcagcttgc ccgccctcgc tcctgtggcc gcgcgatgat
     4021 gcatctcgac atcgccattg tcgacgaaaa tggcaattcg gtgccaccgg gcaacagcgg
     4081 cgagctggta gtgcgcgggc cgagcgtatt aaggggctat tggaaccagc ccgaggcgac
     4141 ggagtctgcc ttgcgcggcg gctggcttca caccggcgat ctcttcacca tcgacgagga
     4201 aggctatctc accctgctcg ggcggctcaa ggagttgatc aagaccggcg gcgagaatgt
     4261 ctatcccaag gaggtggagg cggcgttgct cgctcatccg tgcatcgtcg attgcagcgt
     4321 gttcggcgtg ccgcacgagc attggggcga agcggtgaag gcagcaatcg tgcttgcgcc
     4381 cggcgcgacg ctcagcgctg ccgaggtcgt gaaatggtgc cgcgaacaca tcgccggcta
     4441 caagcggccg cgttatgtcg agttcatgaa cgcgcttccc cgcagcgacg ccggcaagct
     4501 cctgatgcgc gagctacgcg cccggccggt gacgtccgac caggcgaccg actgataccc
     4561 cgccgctcgc ttggaaagcg acgaggcaat ccgcatgggt aagtgagaat tatcctgccg
     4621 tgagagcttc gactataaat gggcgcaagc cgtctggggc ccttgcccgc gaaccgagcg
     4681 tcacaatgtg ctaggcggca agacgtgctt gtcgcttctt tcgccctgga gaagtggctt
     4741 aaggccggtg accatgttct gcagccattc gacgaacaaa gagacgcgcc gaatgcgcct
     4801 gaggtcgcgg tgcacgacga ggtagaagct tctctgcagg ctgaagtgct ttctcctgat
     4861 ccgagttaac cgcgggtcgg catccccgat gaagcacggc agcaccccga cgccggcgcc
     4921 gctcgcgatc agtgctgctt gtgcgttgac gcttgtgctt gtgagcgttg ggcgaagtcc
     4981 tggggcgagt tcattcagat aatccaattc aggcgcgtaa atcaggtctg ggacgtaccc
     5041 gaccagcggc gccgaattca gctccacaat gggagcgggg tcgtccggct ccgtggctac
     5101 atagaggcct aagcgatagt cagtcagctt gcttgcaatg agcggccctc ttttcggccg
     5161 ggctagcatg atggcgagat ctgcctccct ccgggacgga ttgagaaacc ctgtcgaggc
     5221 tacgagttcg actgcgatgt ccgggtgctt tgctgaaaag ctcttgaggt ttggggcgat
     5281 aacccaagtt ccgaagccct cggatacgct taccctgatg gtgccggttg gctgctcagc
     5341 cgaagcgctg ccctcaagcg cggcaagtgc ggcgctctcc atggcttgtg catggccgag
     5401 aagctcattt cctcgggatg tcaggatatg accgttgggc gtaacttcga aaaggcttct
     5461 gccaatccgc tcctcgaagc gagcgagccg acgagcgacg gtcgtggcat ccaacgagag
     5521 ttggcgaccc gcggcgatta gagtgcgccc ccgaaccacc gcaaggaata tccgcagatc
     5581 gtcccagtcc atcggcgatt gctgcctgca attttgcaga tcgtaaatgc aatttcgctc
     5641 gattgcctgc ggaagtgccg aaccgcaatg tggcgaagag agaggaattt tcatgcgcga
     5701 cattgatcat tttattgtcg gcggggcggg gggttcggcc agccgcttcg gcgacgtgtt
     5761 tgacccgaac tcggggcggg tgcaggcgcg cgttcggctt ggcacggcgg aggtgctgga
     5821 gcgggcgatt gcggcggcac agaaggcgca gccgggctgg gccgcgacca atccgcagcg
     5881 gcgcgcgcgc gtgatgttca acttcaaggc tttggtcgag aagaacatgg acgcgctcgc
     5941 ccacacgctg tcgtccgagc atggcaaggt gatcgcggat gcgaagggcg acatccagcg
     6001 cggtctggaa gtgatcgagt tctgctgcgg catcccgcat gcgctgaagg gcgagtacac
     6061 ccagggcgcc gggcccggca tcgacgtcta ttcgatgcgc cagccgcttg ggctgggcgc
     6121 gggcatcacg ccgttcaact ttccggcgat gatcccgatg tggatgttcg gcgtcgccat
     6181 cgcgaccggc aacgccttcc tcctgaagcc gtccgagcgc gacccgagcg tgccggtgcg
     6241 cctggccgag ctgctgctcg aagccggcgc gcccgaaggc attctgcagg tcgtgcacgg
     6301 cgacaaggag atggtcgatg cgatcctcga ccatccggcg atctcggcgg tgagctttgt
     6361 cggctcgtcc gacattgccc attatgtgta ccgccgcggc gtcgaggcgg ggaagcgcgt
     6421 ccaggcgatg ggcggggcca agaaccacgg catcgtcatg cccgacgccg acctcgacca
     6481 ggtggtgaag gacctgaccg gcgcggcatt cggctcggcg ggggagcgct gcatggcgct
     6541 gccggtggtg gtgccggtga cggaccagac cgccaacgag ctgcgcgagg cgctgatccc
     6601 ggcgattgcg tccttgcgcg tcggcgtctc caccgatccg gacgcgcatt acgggccggt
     6661 ggtcaacgcc gcgcacaagc agcgcgtcga gaactggatc cagaccggca tcgacgaagg
     6721 cgccgagctg gtcgtggacg gccgcggctt cagcctgcag gggcatgagc aggggttctt
     6781 catcggcccc tcgctgttcg atcacgtcaa gccggcgatg aagagctacc aggaagagat
     6841 tttcgggccc gtgctccaga tcgtgcgcgc gccggatttc gagacggcgc tgaggctccc
     6901 gtccgagcac caatatggca atggcgtcgc gatcttcacg cgcaacggcc atgccgcgcg
     6961 cgagttcgcc caccgcgtca atgtcggcat ggtcggcatc aacgtgccga tcccggtgcc
     7021 ggtcgcctat cacagcttcg gcggctggaa gcgctcggcg ttcggcgaca tcaaccagca
     7081 cggcatggaa ggcgtccgct tctggaccaa gaccaagacc atcacccagc gctggcccga
     7141 cggcgaggcg catggcgaca atgcgttcgt catcccgacg atgggatgag ggatcgatga
     7201 ccgaacgcca gcgcgcggct tccgcttcgc cctatgagga gagcatcggc ttttcccgcg
     7261 cgctccgggt cggggagcgc atcctggtct ctggcacggc gccggtcgag gcggatgggt
     7321 cgagcacgcc gggcgatgcc gaggcacagg cggagcggtg cttcgacatc atcgtcggcg
     7381 cgatccgggc gctgggcggc acgcgcgcgg atatcgtgcg gacgcgcatg ttcatcaccg
     7441 atcccgcgga cgccgaggcg gtcgggcggg cacatgggcg gcgcttcggc gatgtgcggc
     7501 cggcggcgac gatggtggtc gtgtccgcgc tgctgcgccc cgaatggcgc gttgagatcg
     7561 aggcggaggc ggtgctaggc gccgcggcat gacccagcaa ttcgatctga ccgacgacca
     7621 gcgccagatc caggaaatgg cgcggaagtt cacggcggac gcgatcacgc cgttcgcggc
     7681 cgagtgggac gagaagcacg tcttcccgcg tgacacgatc aaggccgcgg ccgagctggg
     7741 cttcgcctcg atctatgtgt cggaagagat gggcggcatc ggccttggcc ggctggaggc
     7801 ggcgctgatc atggaagcga tggcctatgg ctgcccgtcc accagcgcct tcatctcgat
     7861 ccacaatatg gcgagctgga tgatcgaccg gttcgggtcg gatgcggtca agcgcaaata
     7921 cctgccctcg ctcgtcacga tggaccggat cgccagctat tgcctgaccg agccgtcgtc
     7981 cggctccgac gccgcggcgc tgaagacgaa ggcggtgctg gacggcgacc attatgtcgt
     8041 gaccggctcg aaggcgttca tctcgggcgg cggcacgaac gaaatctatg tgacgatggt
     8101 gcgcaccggc gtcgaaggac ccaagggcat tacttgcctc gtcatcgaaa aggacatgcc
     8161 gggcgtttcg ttcggggcga atgagaggaa gctcggctgg cattcgcagc cgacggcgca
     8221 ggtcaatttc gacggggttc gggtgccggt ggagaaccgg gtcggcgcgg aaggcgaggg
     8281 gttccggatt gcgatgatgg ggctggacgg cggccgtctg aacatcggcg cctgctcgct
     8341 gggcggggcg cagcgctgcc tcgacgaggc ggtcaaatac accagggagc gcaagcagtt
     8401 cggcaccgcc atcgccgact tccagaacac gcagttcatg ctcgccgaca tggagaccga
     8461 gctgcaggcc gcgcggatgc tgctctacgc cgctgccgcg aaagtgacgg cgaacgcgcc
     8521 cgacaagacc aggttcgcgg caatggcgaa gcgcttcgcg accgacaccg gatcgtcggt
     8581 ggtcgaccgc gcgctgcagc tgcatggcgg ctatggctat ctgatggact atccgatcga
     8641 acgcttctgg cgcgacttgc gcgtccactc gatcctcgaa ggcaccaacc aggtcatgcg
     8701 catgatcgtc ggacgcgagc tgacacggca atgaatgagg agattctcgc cttcaaggaa
     8761 ggccatgttg ggcggatccg gctgaatcgg ccccaggcga ttcatgcgct gacgaccggg
     8821 atgtgccgcg cgattctcga caagctggag gaatggcgga cgacggacgc ggttcgtgcc
     8881 gtgctgttcg atcatgccgg gggccggggc ttttgcgccg gcggcgacat tcgcatgctg
     8941 gccgacagcg gggcgaagga cggcgcggag gcccgcgaat tcttccacgc cgaatatcag
     9001 atgaacgagc ggctcttcac ttatgtgaag ccgacggccg cgttcatgga cgggatcacg
     9061 atgggcggcg gcgtcggcat cgcgatgccg tgcaagttcc gcgtcgcgac cgagaacacg
     9121 cgcttcgcca tgcccgagac cggcatcggc ctgttcccgg atgtcggcgg cggctggtat
     9181 ctctcccgcc tgcccggccg cacggggcag ttccttgcgc tgaccggcgc gcgattggac
     9241 ggggcggaat gcttgctgct ggggcttgcc acccactatg ttccggctgc cgcgctcgaa
     9301 gaagtgaagg ccaggatcgc cgccgatccg tccgcgctgg aagccatcct cgacgcttat
     9361 gacgcagagc cgccgccggc ccggatcgag gcgaatctgg agcagatcga ccggctgttc
     9421 gcgtccgacc ggctggaaga catttatgct gcgctcgaag cggacggttc cgaatgggcg
     9481 cagaaggagc tggcgacgct caggac
//
LOCUS       DASQVK010000189         4555 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_170535,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000189 DASQVK010000000
VERSION     DASQVK010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4555
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170535"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..639)
                     /gene="thiL"
                     /locus_tag="VE567_04040"
     CDS             complement(<1..639)
                     /gene="thiL"
                     /locus_tag="VE567_04040"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009030 - thiamine-phosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HYZ48045.1"
                     /translation="MSESEFIAALRGLATAPAARGLLDDAAVLGDLVFTHDMIAEGVH
                     FLADDPPEDVAWKLVAMNLSDLAAKGAEPVGCLLGYALGPAEWNARFLAGLSEVLHAY
                     AMPLLGGDTVRANGPRSFGLTAIGRAPHAPSRSGAKPGDALYITGIIGRAGLGLELLR
                     SGRTGPEIEAYRRPRPRLVEGRALAPLVHAMMDVSDGLLIDAQRMAEASGVAA"
     gene            complement(636..1634)
                     /locus_tag="VE567_04045"
     CDS             complement(636..1634)
                     /locus_tag="VE567_04045"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ligase-associated DNA damage response
                     exonuclease"
                     /protein_id="HYZ48046.1"
                     /translation="MRPLGAWIEPHPEGIYLPAADAWIDPSQPKARALVTHGHSDHAC
                     GGHGQVWATPETLAIMEARYGLQAAQPLAYGETIRLGEVQVSFVPAGHVLGSAQIVLE
                     HQGERAVVSGDYKRRADPTCPPFEPQACDIFITEATFGLPVFVHPDTGDEIDKLLEAL
                     RANPDRCVLVGAYALGKAQRIIAELRLRGHDDPIYIHGALQRLCDLYAAHGVPLGDLR
                     PATGVAKAEIAGHIVLAPPGALNDRWSRRLPDPITAMASGWMRIRQRAVQRNVELPLI
                     ISDHADWDELTATILEIAPREVWVTHGREDALIHWCMTRQISARALELRGYEDEDD"
     gene            complement(1631..2074)
                     /locus_tag="VE567_04050"
     CDS             complement(1631..2074)
                     /locus_tag="VE567_04050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48047.1"
                     /translation="MTQPYLRAAIFAVLSLILLAAISVVVFLFAIGMPKGPGGMAAFQ
                     AQAAAIAPTVDLAVGAVVMLLCGWLAARPYAGGEALKAGVMVGIVYIVLDVAIVLAFG
                     DVRQMSIGTTGVSYAVKVAAAAIGGLLAGRTAAAPHEPLVSPEEP"
     gene            2157..2342
                     /locus_tag="VE567_04055"
     CDS             2157..2342
                     /locus_tag="VE567_04055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48048.1"
                     /translation="MGTVWIVFLALGTIALGIVLFTSMMRNRKHESPAEIARTEAATR
                     AFRERGADNAPENEVER"
     gene            2376..>4555
                     /locus_tag="VE567_04060"
     CDS             2376..>4555
                     /locus_tag="VE567_04060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ligase-associated DNA damage response DEXH box
                     helicase"
                     /protein_id="HYZ48049.1"
                     /translation="MDIALPPSLATWFAAKGWSPRRHQLDMLAAARRGDHALLVAPTG
                     SGKTLAGFLPSLVELIERPTDTLHTLYVSPLKALAIDVQRNLLTPIEEMDLDIRVETR
                     TGDTPSDRKARQRVRPPQMLLTTPESLSLLLSYPDSFTLFAGLKTIVIDEVHALATGK
                     RGDLLSLAMARLQRIAPALRRVALSATVADPDGYRAWLAPDGDIEAVALVQGEKGAEP
                     NISILIPEDRIPWAGHSGRYAAAQVMAEIETHRTTIVFCNTRSLAELIFQDLWTVNEL
                     KLPIGVHHGSLSREARRKVELAMAEGRLRALVATASLDLGVDWGDVDCVIQMGAPKGA
                     SRLVQRVGRANHRLDEPSEAILVPGNRFEYLEARAALDAVETGDLDTDSFRPGALDVL
                     AQHIMACACAAPFDAAELLDEIRSALPYSALTDELFERVLGFIESGGYALRAYDRFKR
                     LTKGPDGKWRVSHPKFVTQHRLNAGIIVEATMLNVRFKNGRLLGKVEEGFAATLSRGD
                     TFFFAGLTLEVERMDTEDLVVRATSRPARIPTYGGARMPISTNLADRVRAFLAKPEEW
                     PRFPADVREWLEMQARRSALPAPDQLLIETFEREKRHHMVVYSFEGWNAHQALGMLVT
                     KRMEMLGLKPLGFVASDYAIATYSLERVTDPRPLFSPDILEQEFVDWVQQSSLLKRAF
                     REVAVIGGLVERQHPGKRKTGKQVTFSTDLIYDVLRRYEPDHLLL"
BASE COUNT          779 a         1549 c         1502 g          725 t
ORIGIN      
        1 ggccgcaact ccgctcgcct cggccatgcg ctgcgcatcg atcagaaggc cgtcggaaac
       61 gtccatcatg gcgtggacga ggggcgccag cgcgcgccct tcgacgagac gaggcctggg
      121 gcggcgatag gcttcgattt ccggacccgt gcggcccgac ctgagcaact ccagcccgag
      181 cccggcgcgg ccgattatcc cggttatgta tagcgcatcg ccgggcttgg cgcctgaacg
      241 cgacggagca tgcggtgccc gcccgatcgc cgtcaggccg aagctccgcg ggccgttcgc
      301 ccgtaccgtg tccccgccga gcaggggcat ggcataggca tggagcacct cgcttaggcc
      361 cgcgagaaag cgcgcgttcc actccgcagg ccccagcgca tagccgagca ggcagccgac
      421 cggctccgcg cccttggcgg cgaggtcgga aaggttcatg gcgaccagct tccacgcgac
      481 atcctcgggc ggatcgtcgg caaggaaatg cacgccttcg gcaatcatat cgtgcgtgaa
      541 gacgaggtcg cccagcaccg ccgcatcgtc gagcaggccc cgtgctgccg gcgcggtggc
      601 aaggccgcgc aatgcggcga taaattctga ctcgctcaat cgtcttcgtc ttcatagccg
      661 cgcagttcga gcgcgcgggc gctgatttgg cgagtcatgc accaatggat gagcgcgtcc
      721 tcgcgaccgt gcgtgaccca gacttcccgc ggcgcgattt cgaggatcgt cgcagtcagc
      781 tcgtcccaat cggcatggtc ggagatgatc agcggcagct cgacattgcg ctgcaccgcg
      841 cgctggcgga tgcgcatcca tccggaggcc atcgcggtga tcgggtcggg caagcgccgg
      901 ctccatcggt cgttgagcgc gccgggcggg gcaaggacga tatggccggc gatctccgcc
      961 ttggccacac cggtcgcagg ccgcagatcg ccgagcggca cgccgtgcgc ggcatagagg
     1021 tcacacagcc gctggagcgc cccatgaata tagattgggt cgtcatgacc gcgcaggcgc
     1081 agctcggcga tgatccgctg cgccttaccg agcgcatagg cgccgacaag cacgcaccga
     1141 tccggattgg cgcggagtgc ttcgagcaat ttgtcgattt cgtcgccggt atcggggtga
     1201 acgaacaccg gcaggccgaa agttgcctcc gtaatgaaga tgtcgcacgc ctgcggttcg
     1261 aacggcgggc aggtcgggtc cgctcgccgc ttataatcgc cggagacgac cgctcgctcg
     1321 ccttgatgct ccagcacgat ctgcgccgag ccgagcacgt gtccggcagg cacgaagctc
     1381 acttgcacct cgcccaggcg gatggtctcg ccataggcaa gcggttgcgc cgcctgcagc
     1441 ccatagcgcg cttccatgat cgcgagcgtc tcgggcgtgg cccagacctg gccgtggcct
     1501 ccgcaggcgt gatccgaatg gccatgagtg acgagcgctc tcgccttggg ttgcgacgga
     1561 tcgatccagg cgtcggcggc gggcaaatag atgccttccg gatgcggctc gatccaggcg
     1621 ccgagcggcc tcacggttcc tcgggagaga ccagcggctc gtgcggcgcc gcggcggtcc
     1681 ggccggcgag cagcccaccg atcgcggcgg cggcgacctt gaccgcgtag gaaacgcctg
     1741 tcgtgccgat gctcatctgc cggacatcgc cgaacgccag cacgatagca acgtcgagca
     1801 cgatatagac aatgccgacc atcacgcccg ccttcagcgc ctcgcccccc gcatagggcc
     1861 gcgcggcaag ccagccgcac agcagcatca cgacggcgcc gacagccaga tcgacagtcg
     1921 gtgcgatcgc ggccgcctgg gcctgaaagg cggccatgcc accgggcccc ttaggcatgc
     1981 cgatcgcgaa gaggaacacg acgacgctga tcgccgcgag gagaatcaac gaaaggacgg
     2041 cgaagatggc ggcgcggaga taaggctggg tcatggcctg acgctactcc aaccgacttg
     2101 gatcgcaaac cgttccgctt cgttgacgag atcgacgggc gatcgaggag gattttgtgg
     2161 gtacggtttg gatcgtcttt ctggcgctgg gcacgatcgc gctcgggatc gtgctgttca
     2221 cgagcatgat gcgcaaccgc aagcatgaaa gccccgccga gatcgcgcgc accgaagccg
     2281 cgacgcgcgc cttccgcgaa cgcggcgcgg acaatgctcc agaaaacgag gtcgagcggt
     2341 agaagcccgg tcaaagccct cgctataggc aggcgatgga catcgctctg ccgccctcac
     2401 tggccacctg gttcgccgcc aagggctggt ccccgcggcg gcatcagctc gacatgctgg
     2461 cggcagcgcg gcggggcgac cacgccttgc tggtcgcgcc aaccggatcg ggcaagacgc
     2521 tcgccggctt cctgcccagc ctcgtcgagc tgatcgagcg cccgaccgac acgctgcaca
     2581 cgctctacgt ctcgcccctg aaggcgctgg cgatcgacgt tcagcgcaat ctgctgaccc
     2641 cgatcgagga gatggacctc gatatccggg tcgagacccg caccggcgac acgccgtccg
     2701 accgcaaggc ccgccagcgc gtgcggccgc cgcagatgct gctgaccacg cccgaatcgc
     2761 ttagcctgtt gctgtcctat cccgacagct tcacgctgtt cgcgggcctg aagacgatcg
     2821 tgatcgacga agtgcacgcc ttggccaccg gcaaacgcgg cgacctcctc tccctcgcca
     2881 tggcgcggct gcagcggatc gcgccggcgc tgcggcgggt tgcgctgtcg gcgacggtcg
     2941 ccgatcccga cggctatcgc gcctggcttg cccccgatgg tgacatcgag gcggtcgcgc
     3001 tggttcaggg cgagaaaggc gcggagccga acatctcaat cctcatcccg gaagaccgca
     3061 ttccctgggc cggtcattcg ggccgctacg ctgccgcgca ggtgatggcc gagatcgaga
     3121 cgcaccggac cacgatcgtc ttttgcaaca cgcggagcct ggcggagctg attttccagg
     3181 atctttggac ggtcaatgag ctgaagctgc cgatcggcgt ccatcacggg agcctcagcc
     3241 gggaagcgcg gcgcaaggtc gagctggcga tggcggaagg gcggctgcgc gcgctggtcg
     3301 cgaccgcctc gctcgacctc ggcgtcgact ggggcgacgt cgattgcgtg atccagatgg
     3361 gagcgcccaa aggcgcgtca cggctggtcc agcgcgtggg gcgcgccaat caccggcttg
     3421 atgagccctc cgaggcgatc ctcgtcccgg gcaaccgctt cgaatatctg gaagcgcgcg
     3481 cggcgctcga cgcggttgag acaggcgatc tcgatactga tagcttccgg ccgggcgcgc
     3541 tcgacgtgct cgcccagcac atcatggcct gcgcctgcgc cgcgccgttc gacgcggccg
     3601 agctgctcga cgaaattcgc tccgcgctgc cctattcggc gcttaccgac gagctgttcg
     3661 agcgcgtgct cggcttcatc gaatcgggcg gctatgcctt gcgcgcctat gaccgcttca
     3721 agcgcctgac caaggggccg gacggcaagt ggcgcgtcag ccatccgaaa ttcgtgacgc
     3781 agcaccgcct caatgcgggc atcatcgtcg aagcgacgat gctgaacgtc cgtttcaaga
     3841 acgggcgtct gctcggcaag gtcgaggaag gctttgcggc gactctttcc agaggcgaca
     3901 cattcttctt cgccggcctc acgctcgagg tcgagcgcat ggataccgag gacctggtgg
     3961 tccgcgccac gtccagaccc gcgcgcattc ccacctatgg cggcgcccgc atgccgatct
     4021 cgaccaacct cgccgatcgg gtgcgcgcct ttctcgccaa gcccgaggaa tggcctcgct
     4081 tccccgccga cgtgcgcgaa tggctggaaa tgcaggcgcg ccgctccgcg cttcctgcgc
     4141 ccgatcagct cctcatcgag acgttcgagc gcgagaaacg gcaccatatg gtcgtgtaca
     4201 gcttcgaagg ctggaacgcg caccaggcgc tcggcatgct ggtcacgaag cggatggaga
     4261 tgctggggct gaagccgctc ggcttcgtgg ccagcgacta tgcgatcgcg acctacagcc
     4321 tcgagcgcgt caccgatccg cgcccgctct tttcgcccga tatcctggag caggaattcg
     4381 tcgattgggt gcagcaatcc tcgctgctga agcgcgcgtt tcgcgaagtc gctgtgatcg
     4441 gcgggctcgt cgagcgccag catccgggca agcgcaagac cggcaagcaa gtcactttct
     4501 cgaccgacct catctacgac gtgctgcgcc ggtacgagcc cgaccatctg ctgct
//
LOCUS       DASQVK010000190         7229 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_107744,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000190 DASQVK010000000
VERSION     DASQVK010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 7229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7229
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107744"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            137..1840
                     /locus_tag="VE567_04065"
     CDS             137..1840
                     /locus_tag="VE567_04065"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HYZ48050.1"
                     /translation="MEDFFENGAIGLHMVDRDGIILRANKAELNLLGYSADEYVGRSI
                     ADFHADAEVIDDILKRLTAGERLDKYPARMRAKDGSIKHVQINSSVLFRDGDFINTRC
                     FTVDVTGQVEAEAARIEAERRLVETYEHATVGIGETDAAGRFVRVNAAFERLTGYSRE
                     ELVGKSFAELTHPDDREHDLTLYAEQVAGKLDSYSLEKRYLHKNGSIRDVELLSSVVR
                     SPAGAFQYGVRVLNDISARRRAEELARDTERRCQDLLNALPVAVYTTDRQGRLAYFNE
                     AAATFAGRRPRLGVDEWCVTWKLYWPDGTPLPPDQSPMAVALDTGDEIRGLEAVAERP
                     DGSKRVFTPYPTLLRDSEGNVVEAVNVLVDITERKQAEETQKLLIDELNHRVKNTLAT
                     VQSIAMQTQRSTPECFAERFEARLLSLSRAHDLLTRRRWTGVSLRELLEQASAPYMDQ
                     LHRPIVLDGPDLMLSARAGLAMALTIHELMTNAAKYGALSGEAGRVAISWSVLEGPEG
                     QGLAICWREQGGPAVAEPSRRGFGLRLIERSIAKDLGGRADLRFASEGLEAMLQFPLA
                     A"
     gene            1837..2208
                     /locus_tag="VE567_04070"
     CDS             1837..2208
                     /locus_tag="VE567_04070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019371083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYZ48051.1"
                     /translation="MIAATDRLRGLRILVVEDEGPVAMLIEDMLEDMGCTVAGSAASV
                     GEALELIGRGGFDFALLDVNLAGEKVDPAAELLMRRGVPFAFATGYGAGGISQELRDR
                     PVVQKPFSARELAALVCRALG"
     gene            2528..4825
                     /gene="glf"
                     /locus_tag="VE567_04075"
     CDS             2528..4825
                     /gene="glf"
                     /locus_tag="VE567_04075"
                     /EC_number="5.4.99.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020819623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008767 - UDP-galactopyranose mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009273 - peptidoglycan-based cell wall
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactopyranose mutase"
                     /protein_id="HYZ48052.1"
                     /translation="MSRFARDYRVVFWEEPILDATGEPSLDLSICAKSGVTVAVPHLN
                     PDEAALHQKQLRRLVDELLAARSGPLVRWYYTPMMLPFSRHIDAECTVYDCMDELANF
                     KFAPPELLPLEQELMGLADLVFTGGYSLYEAKRERHLNVHAFPSSVDVRHFSQARTRQ
                     ADPADQAGLPRPRLGFYGVIDERMNLELLSAAAEQRPDWTFVMIGPVVKISPDELPTL
                     PNIAWLGSKDYAELPAYLSGWDVAMMPFAINDATRFISPTKTPEYLAAGRPVVSTPIK
                     DVVRHYGELDAVQIASNPAEFVAACERALALPRTNREWLRPVDALLSTMSWDETAAQM
                     QALIAEAAAERRAVPPATAKKPHYDVLVVGAGFAGAVMAERLATDGGKKVLVIDRRPH
                     IGGNAYDLPNEDGILYHLYGPHIFHTNSEEIFSYLSRFTEWRPYEHRVLAQVRDMLVP
                     MPINRTTLNRLYGLDLQTEEEAEAFLASRAEPVPEIRTSADVVISKVGRELYELFFQG
                     YTRKQWGMDPSELDKSVTSRVPTRTNTDDRYFTDAFQAMPRDGYTRMFERMLDHPNID
                     LRLGVEWEDVRREVSYDKLVFTGPIDEYFGYRYGKLPYRSLKFRHETLDEEVFQPVAV
                     VNYPSQDVPYTRVTEYKYLTGQVAPKTSITYEYPSAEGDPYYPIPRPENQALFKRYEA
                     MALAEADVVFVGRLATYRYYNMDQVVGQALATYRRMKTAEQEQRTADNAAASLMATAA
                     ERPALFARAPLARTGSSEAAATPAE"
     gene            4830..5789
                     /locus_tag="VE567_04080"
     CDS             4830..5789
                     /locus_tag="VE567_04080"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYZ48053.1"
                     /translation="MAEDRPRVLVTGGSSGIGFELARQFAEGGHDTVIAAQDIDKLEQ
                     AAELIRERAPDVEVMTVAADLTSESGVHLLHREAGRVDILCANAGIGAGGGDFTETDL
                     KQELELIDLNVRGQVHLAKLVVKDMADRGEGRVLFTSSIASIMPGPFEAVYAASKAFI
                     RSFGEALRNELSEKGIQVTVFMPGPTETDFFHRANMDETPAGRAAKDDAADVAAQAID
                     ALYAGRHAAVTGSLKIRFQSRVASLLSDPARAALHRRQTEPLDRDEPGQHGMSPAAIG
                     GLFFVGLAAAAGTAAWLQSRHEEGRQGSRRREPRAEFEVAGKS"
     gene            5917..6534
                     /locus_tag="VE567_04085"
     CDS             5917..6534
                     /locus_tag="VE567_04085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HYZ48054.1"
                     /translation="MKKWLLAAAAAVAIAAPASAGVITLASRTVNGPNDFTFTYQGTL
                     GPDEGVTAGDRLIIYDFAGYIAGSIFSMIPTVTPTVEFTSPSGIVTPGFTDDPTLPNL
                     VFTYTGPDFRTSGGPFPPFDFNGLGARSTFGGLNDDAFFGFSTKNNPDGIPGGTGTKI
                     YSLGSVTVPAPAGVPEPATWAMMLGGFGVAGAFARRRKTAKAVLA"
     gene            6634..6948
                     /locus_tag="VE567_04090"
     CDS             6634..6948
                     /locus_tag="VE567_04090"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYZ48055.1"
                     /translation="MDAQVRDNDEKNRFEIDLGDGLAIADYKRLVNRIMFTHTEVPPA
                     YEGQGIARQLILAGLEAARREGRKVIPVCPLFASYMKRHPETHDLLDPAYLSVLGIER
                     SA"
     gene            7029..>7229
                     /locus_tag="VE567_04095"
     CDS             7029..>7229
                     /locus_tag="VE567_04095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HYZ48056.1"
                     /translation="MLGIGIDWSATNPIRALFWSAVLNGVIAVPIMAAMMIVVSRRSA
                     MGRFVASGRLLAIGWCATAIMAA"
BASE COUNT         1246 a         2362 c         2368 g         1253 t
ORIGIN      
        1 ccgggttgac gcaaatgcgc agctcatact ttgcgcctga gggcgtgtac ccttgggaga
       61 ccggccggtg cgggaggcgc ttctcacacg cgaacagggg gggtgcgatg tggcgcctgg
      121 ggcgcaggtt caggatttgg aagacttttt cgaaaatggc gcgatcggcc tgcacatggt
      181 cgatcgcgac ggcatcatcc tgcgcgcgaa caaggcggag ctgaacctgc tcggctattc
      241 ggccgacgaa tatgtcggcc gctcgatcgc cgatttccac gccgacgccg aggtaatcga
      301 cgacatactg aagcggctca cggcgggcga gcggcttgat aaatacccgg cgcgaatgcg
      361 ggcgaaggac ggctcgatca agcacgtcca gatcaactcc agtgtgctgt tccgcgatgg
      421 cgatttcatc aacacccgtt gtttcaccgt cgatgtgacg ggtcaggtcg aggcagaggc
      481 ggcgcggatc gaggccgagc ggcggctggt cgaaacctat gaacatgcaa cggtcggtat
      541 cggcgaaacg gatgcggccg gccgcttcgt ccgggtaaac gccgcgttcg agcggctgac
      601 cggctattcg cgcgaggaat tggtcggcaa gagcttcgcg gagctgacgc acccggatga
      661 ccgggagcac gatcttaccc tttatgccga gcaagtggcc ggcaagctcg acagctacag
      721 cctggaaaag cggtatctcc ataagaacgg ttcgatccgc gacgtggaat tgctgagctc
      781 ggtcgtgcgc tcgcccgcgg gcgctttcca atatggcgtt cgcgtgctca atgacatcag
      841 cgcgcgccgc cgggccgaag aactggcccg tgacaccgag cggcgctgcc aggacctcct
      901 caatgcgctg ccggtggccg tgtacacgac cgaccgccag ggccggctcg cctatttcaa
      961 cgaagccgcg gcgacattcg ccggccgccg gccccgcctc ggtgtcgatg aatggtgcgt
     1021 cacctggaag ctctattggc ccgacgggac gccgctgccg ccggatcaat ctccgatggc
     1081 cgtggccctc gataccggcg atgagatccg cggcctcgaa gccgtcgcgg aacgccccga
     1141 tggcagcaag cgcgtgttca cgccctatcc cacgctgctc cgcgactcag agggcaatgt
     1201 ggttgaggcg gtcaatgtgc tggtcgacat taccgagcgc aaacaggcgg aggaaacgca
     1261 gaagctgctg atcgacgagc tcaatcaccg tgtaaagaac actttggcaa cggtccagtc
     1321 gatcgcgatg cagacccagc gttcgacgcc ggagtgcttc gccgagcgct tcgaggcgcg
     1381 gctgctgtcg ctgagccgcg cccatgacct gctgacgcgc aggcgctgga ccggcgtcag
     1441 cttgcgcgag ctgctcgaac aggcgtccgc cccctatatg gaccagctgc accgtcccat
     1501 tgtcttggac ggaccggatc tgatgctgtc ggcgcgagcc gggctcgcta tggcgctgac
     1561 cattcatgag ctgatgacca atgccgccaa atatggcgca ttgtccggcg aagctggccg
     1621 cgtcgcgatt tcctggtccg tcctcgaagg ccctgaaggc caggggctgg caatctgctg
     1681 gcgcgagcag ggcggtccgg ccgtcgccga gccgtcgcgc cgcggcttcg gcctgcgcct
     1741 gatcgagcgc agcattgcca aggatttggg cggccgggcg gatctgcgct tcgcgtccga
     1801 aggccttgag gcgatgctgc aatttcccct ggcggcatga tcgctgcgac tgaccgcctg
     1861 cgagggctgc gcattctcgt ggtcgaggat gaaggcccgg tcgcaatgct gatcgaagac
     1921 atgttggagg acatgggctg cacggtcgcc ggcagcgccg caagcgtcgg cgaagccttg
     1981 gagctgatcg ggcgcggcgg cttcgacttc gcgctgctcg acgtcaatct ggcgggcgag
     2041 aaggtcgatc cggcggccga gctgctgatg cggcgcggcg tgcctttcgc gttcgcgacc
     2101 ggctatggcg cgggcggcat cagccaggaa ctgcgcgatc gcccggtcgt gcaaaagccc
     2161 ttcagtgcgc gcgaactggc cgcgctggtg tgccgcgcac tcggctagag gccggcgttc
     2221 agcaaaggcc gcgctgcccc tggcctgtcg gaagccgttc cgcagccgcg acgaatggaa
     2281 cgcgctcttg gaactaagtg cctgtttcgg cgcttttaca gctgaccagc cgatgaacga
     2341 gtgggggcgc cgcggtcctc gcgggcgcca aggcatggct gggcaaaacc aaaggagcct
     2401 tatgacccta ggatcgtcct atcgccgcga gcaggcaagc tactccggcg gcgcttctgc
     2461 ccggccgatg cttctgtgct tttctcatct gcgctggaat ttcgtgttcc aacgtccgca
     2521 gcatctgatg agccgcttcg cgcgcgacta ccgggtcgtc ttctgggaag agccgattct
     2581 cgacgcgacc ggggagccga gcctcgatct gtcgatctgc gccaagagcg gcgtcaccgt
     2641 cgccgtcccg catctcaacc ccgacgaggc cgcgctgcac cagaagcagc tgcgccgcct
     2701 ggtggacgag ctgctcgccg cgcgctcggg gccgctggtg cgctggtatt atacgccgat
     2761 gatgctgcct ttctcgcggc atatcgacgc ggagtgcacc gtctatgact gcatggacga
     2821 actcgccaat ttcaagttcg ccccgcccga attgctcccg ctcgagcagg agctgatggg
     2881 ccttgccgac ctcgtcttca ccggcggcta cagcctctat gaagccaagc gggagcggca
     2941 cctcaatgtg cacgccttcc cgtccagcgt ggacgttcgc catttcagcc aggcgcgcac
     3001 ccgccaggcc gatccggccg atcaggcggg gctgccgcgc ccgcgcctcg gcttctacgg
     3061 cgtgatcgat gagcggatga acctggagct gctgagcgcg gccgcggagc agcgcccgga
     3121 ctggaccttc gtcatgatcg gcccggtcgt gaagatcagc ccggacgagc tgccgacgct
     3181 ccccaacatc gcctggctcg gctccaagga ctatgccgag ctccccgcct atctgtctgg
     3241 ctgggacgtc gcgatgatgc cgttcgcgat caacgatgcg accaggttca tctcgccgac
     3301 caagacgccc gaatatctgg cggcgggacg gccggtcgtc tcgacgccga tcaaggacgt
     3361 ggtccgccat tatggcgagc tggatgcggt ccagatcgcg agcaaccccg ccgaattcgt
     3421 cgccgcgtgc gagcgcgcgc tcgcgctgcc gcgcaccaat cgcgaatggc tgcgccccgt
     3481 cgatgcgctg ctctcgacca tgtcgtggga cgaaaccgcg gcgcagatgc aggcgctgat
     3541 cgcggaagcc gcggcggagc ggcgagccgt tcctccggcg acggcgaaaa agccgcatta
     3601 cgacgtgctc gtcgtcggcg cgggctttgc cggcgcggtg atggccgagc ggctggccac
     3661 ggacggcggc aagaaagtgc tggtgatcga tcggcggccg catatcggcg gcaacgccta
     3721 tgacctgccg aacgaggacg gcattctcta ccacctctac ggcccgcaca tcttccacac
     3781 gaacagcgaa gagattttca gctatctctc ccgctttacc gagtggcggc cttatgagca
     3841 ccgcgtgctg gcgcaggtcc gcgacatgct ggtgccgatg ccgatcaacc gcacgacgct
     3901 gaaccggctc tacggcctcg acctgcagac cgaggaagaa gccgaggcgt tcctcgccag
     3961 ccgtgccgag cccgtgcccg agatcaggac gtcggcggat gtcgtgatct cgaaggtcgg
     4021 gcgcgagctc tacgagctct tcttccaggg ctatacccgc aagcaatggg gcatggaccc
     4081 ctcggagctc gacaagtcgg tcacgtcgcg cgtgccgacg cgcaccaaca cggacgaccg
     4141 ctatttcacc gacgctttcc aggcgatgcc gcgcgacggc tatacgcgca tgttcgagcg
     4201 catgctcgac catccgaaca tcgatctgcg cctcggcgtc gagtgggagg atgttcgccg
     4261 cgaggtgagt tacgacaaat tggtcttcac cggcccgatc gacgaatatt tcggctatcg
     4321 ctacgggaag cttccctatc ggtcgctcaa attccgccac gagacgctgg acgaggaagt
     4381 cttccagccg gtcgcggtgg tcaattaccc gtcgcaggac gtgccctata ctcgtgtcac
     4441 cgagtataaa tacctgaccg ggcaggtcgc gcccaagacg agcatcacct atgaatatcc
     4501 gtccgcggag ggcgatcctt actatccgat cccgcggccg gaaaatcagg cgctcttcaa
     4561 gcgctacgag gcgatggctt tggccgaggc ggacgtggtc tttgtcgggc ggctcgccac
     4621 ctatcgctat tataatatgg accaggtggt cggccaggcg ctcgcgacct atcggcggat
     4681 gaagacggcc gagcaggagc agcgcaccgc ggacaatgcg gcggcgagcc ttatggcaac
     4741 tgcggccgag cgtccggcgt tgtttgcccg tgcgccgctt gcgcgcaccg gcagctcgga
     4801 ggcggccgcg actccagcgg agtgacatca tggcagagga tcggccacgc gttctcgtca
     4861 ccggcggctc gtcgggcatc ggcttcgagc tggcccggca attcgccgaa ggcggccatg
     4921 acacggtcat cgccgcccag gacatcgata agctggagca ggcggctgag ctgatccgcg
     4981 agcgtgcgcc ggacgtcgag gtgatgaccg tcgcggccga tctcacctcc gaatccggcg
     5041 tgcaccttct ccaccgcgag gcggggcggg tcgacattct ctgcgccaac gccggcatcg
     5101 gcgcgggcgg cggcgatttc accgagaccg acctgaagca ggaactggag ctgatcgacc
     5161 tcaatgtccg cggtcaggtt cacctcgcca agctcgtcgt gaaggacatg gccgatcgcg
     5221 gtgagggccg ggtcctcttc acgtcgtcga tcgccagcat catgccgggc cctttcgagg
     5281 cggtctatgc cgcctccaag gcgtttatcc gctcgttcgg cgaggcgttg cgcaacgaac
     5341 tctcggaaaa gggcatccag gtcacggtgt tcatgccggg gccgaccgaa accgattttt
     5401 tccaccgcgc caatatggac gaaacccccg ccggccgcgc ggccaaggac gacgcggcag
     5461 atgtcgccgc ccaggcgatc gacgcgctat atgccggccg ccacgcggcg gttaccggca
     5521 gtctcaaaat ccggttccaa agccgcgtcg ccagcctgtt gtccgatccg gcgcgcgctg
     5581 cgctccaccg tcgccagacg gagccgctcg accgtgacga gcccggacaa catggcatga
     5641 gcccggccgc gatcggcggc ctcttcttcg tcgggctggc cgcggcagcg ggcacggcgg
     5701 cctggctcca gagccggcat gaagagggac ggcagggtag ccgccggcgc gagccgcgcg
     5761 cggaattcga ggttgccgga aaatcttaac gcgctgctaa caaaaatgtg aatccctagt
     5821 gaaccggaaa gccgttgcaa agttgagaca atgtgccccg gcaacggccg cgaattgtcc
     5881 gaccgcataa gccgcgggca acagggagta gtacatatga aaaaatggct gcttgccgcc
     5941 gcggcggctg tcgcaatcgc tgcgccggcc agtgcagggg tgattacgct ggcgtcccgg
     6001 acggtgaacg ggcccaacga cttcaccttc acctatcagg gcacgctcgg gcccgacgaa
     6061 ggggtgactg cgggcgatcg actgatcatc tacgatttcg ctggctatat cgcggggtcg
     6121 atcttctcga tgatcccgac tgtgaccccg acggtggaat tcacgtcgcc gagcgggatc
     6181 gtcacgccgg gctttactga cgacccgacc ctccccaatc tggttttcac ttatacgggg
     6241 ccggatttcc ggaccagcgg cgggcctttc ccgccgttcg acttcaacgg gctgggcgct
     6301 cgctccacgt tcggagggct gaacgacgac gcgtttttcg ggttcagcac caagaacaat
     6361 ccggacggca tcccgggcgg gacgggcacc aagatctact cgctgggttc agtgacggtc
     6421 ccggcgcccg cgggcgttcc ggagccggcg acctgggcaa tgatgctcgg cggcttcggc
     6481 gtcgcgggtg cgttcgcacg ccggcgcaaa acggctaagg cggttctcgc ctgagctcct
     6541 cggacgggcc gctcgacggc ggcccgtcca ccgaggcttg acccaggcct cgcactcccc
     6601 tctgcggatc ctgcgctcgc ggaagggaag acaatggacg cgcaagttcg cgacaatgac
     6661 gagaagaacc ggtttgagat cgacttgggg gacggcctgg cgatcgcgga ctataagcgc
     6721 ctcgtcaacc gcatcatgtt cactcacacc gaagtcccgc ccgcatatga ggggcaaggc
     6781 attgcgcggc agctgatcct cgccggactg gaggcagcgc ggcgtgaggg ccgcaaagtc
     6841 atccccgtct gcccgctctt cgccagctat atgaagcgcc atccggaaac gcacgacctg
     6901 ctcgatcccg cctatctctc cgtgctcggg attgagcgtt cggcctgaac gccaggcccg
     6961 cacccggcaa atgcgttcct cccgctcctt tcgtcaccgg cttctattcc gtccttggcg
     7021 cggcgacttt gctgggcatc ggcatcgact ggtctgcgac caatccgatt cgggcactgt
     7081 tctggagcgc ggtgctgaac ggggtgatcg cggtccccat catggcggcc atgatgatcg
     7141 tcgtctcccg ccgctctgcc atgggcaggt tcgttgcgtc cgggcggctg ctcgcgatcg
     7201 gctggtgcgc caccgccatc atggccgcc
//
LOCUS       DASQVK010000191         5344 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_265845,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000191 DASQVK010000000
VERSION     DASQVK010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5344)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5344)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5344
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265845"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1760)
                     /locus_tag="VE567_04100"
     CDS             complement(<1..1760)
                     /locus_tag="VE567_04100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYZ48057.1"
                     /translation="MLGEAGIQAQACASMPALIEELRRGVGFVLVTEEALASADLHGL
                     DSWLERQEEWSDLPFILLTTRGGGLERNPSAARYLNLLGNVTFLERPFHPTTLISLAQ
                     SALRGRRRQYDARARLEELREGADRYRTLFESIEAGFCIVEMIIDGERAVDYRFLEVN
                     PAFVRQTGLENAVGRRMRELFPQHDEHWFELYGQVALTGEPIRLERHAESLDRWYDLY
                     AFRVGPPEARRVAVLFNDISARRAVEQELRDLTASLEQRIEAATAERETALAQLHEAQ
                     KLETMGQLTGGVAHDFNNLLTPITGALDLLSRRYGDDARSARLIAGAIESAQRARILV
                     QRLLGFARRQVLETRPVDLAALLDGIQDLIASSIGSAIELRIRRAPDLPPAQVDPNQL
                     ELALLNLCVNARDAMPKGGVLTIAAEPDMRGPGDSPRVAPGLYIRLSVIDTGTGMSEE
                     TVARAVEPFFSTKELGKGTGLGLSMVHGLASQLGGGFKLTSALGHGTRVDLWLPVSSV
                     AAASRPQLRECGTGDIHCQCVLLVDDEPLVRAATAEMLREIGHEVTEADSGLEALTKI
                     VEVPIDVVVTDYMMPGMNGA"
     gene            complement(1832..3316)
                     /locus_tag="VE567_04105"
     CDS             complement(1832..3316)
                     /locus_tag="VE567_04105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008994792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HYZ48058.1"
                     /translation="MKFDDFAATGVVGLDDVLAGGLARGRVFLFEGSPGTGKTTIATQ
                     FLLAGAAAGERVLYVSLSESEDELRASAASHGWSLDGIDLYELVPPESLLDEDQQQSL
                     LYSSDLELGETTKRIFETFERIRPTRVVLDSLSEIRLLAQSSLRYRRQVLALKHYFAR
                     QGATVVMLDDLTSEEHDKTVHSVAHGVVRLEELSPDYGPERRRLRVVKFRGRRFRGGY
                     HDFAILTGGVRVFPRLVSAEHRSDFKREMLDSPSPELNALLGGGIERGSSVLVLGPAG
                     TGKSLLALTFIAAAVARGENAAMFVFDEELGLLIERANGLGIDLQAMVDRDQLVLEQV
                     DAAELTPGEFSERVRRGVEGHGARTVIIDSLNGYQAAMPGEQALILHMHELLQYLNRQ
                     GATTFLTVAQHGLVGDMKAPVDVTYLADTVILLRYFEAVGRVRRAMSVVKKRTGPHED
                     TIREYWIGKDGITLGQPLARFQGVLRGVPSLVESSESLSDAGAV"
     gene            3541..4332
                     /locus_tag="VE567_04110"
     CDS             3541..4332
                     /locus_tag="VE567_04110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan 2,3-dioxygenase"
                     /protein_id="HYZ48059.1"
                     /translation="MASDVTYASYLALDDILAAQHPRSGRHDELLFIIIHQTKELWLK
                     QVIVELKLAKAQICEDALVPAYKSLARVSRIQAVMTLAWDVLATMTPSDYSQFRDVLG
                     TSSGFQSDQFRTVEYLLGLKDGRFLAYQKDRPEAERAMAEALQEPSLWDDAIAALARA
                     GFAVPASALERDWTQPYAPDPQVETAWAEVYRDTARWWDLYQLAEKLVDLDDALATWR
                     HKHVVTVERVIGGKRGTGGTAGVKYLQETLGKRAFPELWSLRTLL"
     gene            4329..>5344
                     /locus_tag="VE567_04115"
     CDS             4329..>5344
                     /locus_tag="VE567_04115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class V aminotransferase"
                     /protein_id="HYZ48060.1"
                     /translation="MSGWKHLFRRTLDAAPERLHMAAHSHHLWPDASFDGHYQAWEDA
                     ARLADRKWDRIMGEIWPEAQRQVAAELGLPDPATTVFAPNTHELIVRLVSAIERSRPL
                     KVLASDGEFHSFRRQSARWEAAGEMAVTRVAVEPFGSFSERFLDAARRGDFDLIFVSH
                     VMFNSGLVFENLAEVAAVDGPWIVVDGYHAFMAIETDLGAIADRIFYAAGGYKYAMAG
                     EGAAFLHAPAGFGPRPVNTGWYAEFDDLSLPPGAVGYAPDAGRFMGSTFDASGLYRFV
                     AVRHMLAAEGLTTAAIAAHVAGLQALLLQMTRSTALGGAELLNPPGQGPHARFLAFRS
                     PHAQR"
BASE COUNT          935 a         1754 c         1745 g          910 t
ORIGIN      
        1 tcggcgccgt tcattccggg catcatgtaa tcggttacca caacgtcgat cgggacctcg
       61 acaatcttgg tgagcgcttc gagaccgcta tccgcctcgg tgacttcatg gccgatttcg
      121 cgcagcatct cggccgtcgc ggctcgcacg agcggctcgt cgtcgacaag caggacgcac
      181 tggcaatgga tgtcccccgt tccgcattcc cgcagctgcg gccgcgaagc cgcagcgacg
      241 gagcttacgg gcagccaaag gtcgacacgg gtgccgtggc caagggcgct cgtcagcttg
      301 aagccgccgc ccagctgcga ggcgaggccg tggaccatcg acaggccaag cccggtgccc
      361 ttgcccagct ctttggtcga gaaaaagggt tccaccgcgc gcgccaccgt ttcctcggac
      421 atgccggtcc cggtgtcgat cactgacagg cgaatataca ggccgggcgc gacacggggt
      481 gagtcgcccg ggccgcgcat gtccggctcg gcggcaatgg tgagcacgcc gccctttggc
      541 atcgcatcgc gcgcattgac gcacaggttc aggagcgcca gctcaagctg gttgggatcg
      601 acttgcgcgg gcggcaggtc gggtgccctt cgaatccgca actcgatcgc gctgccgatg
      661 gagctcgcga tcagatcttg gatgccgtcc agcagggccg ccaggtcgac gggacgggtt
      721 tccagcactt ggcgacgcgc gaagccgagc agccgctgaa ccagaatgcg agcgcgctgg
      781 gccgattcga tcgcgcccgc gatcagccgc gccgatcgcg catcatcgcc gtaccgccgg
      841 ctcaaaaggt ccagcgcgcc ggtaatcggt gtcaggaggt tgttgaaatc atgggcgaca
      901 ccgcctgtca gctggcccat cgtttccagc ttctgcgcct catggagttg ggcgagcgcc
      961 gtttcgcgct cggccgtcgc tgcctcgatc ctttgttcga gggaagcggt caggtcgcgc
     1021 agctcctgct cgaccgcgcg gcgcgccgaa atatcgttga agaggacggc gacgcggcgg
     1081 gcttcgggcg gccccacccg gaacgcataa aggtcgtacc agcgatcgag cgattcggcg
     1141 tgcctttcca gacggatcgg ctcgcccgtc agggccactt gcccgtaaag ctcgaaccaa
     1201 tgttcgtcgt gctgcggaaa cagctcgcgc atccgacggc cgacggcatt ttcgaggccc
     1261 gtctgccgca caaaggcggg attcacctca agaaagcggt aatcgacggc ccgctcgcca
     1321 tcgatgatca tttcgacgat gcagaagccc gcttcgatcg actcgaacag agtccgatag
     1381 cgatcggcgc cttcccgaag ctcttcgagg cgcgcgcgag cgtcatattg gcggcgacgg
     1441 ccgcgcaatg ccgactgggc gaggctgatc agagttgtcg ggtgaaacgg acgttcgagg
     1501 aaagtgacgt tgccgagcag attgagatag cgtgcggcag acggattgcg ctccagcccg
     1561 ccgccgcggg tggtgagcag gatgaatggc aaatccgacc attcctcctg ccgctcgagc
     1621 cagctgtcga ggccgtgcag gtcggctgac gccagcgctt cctcggtcac taggacgaag
     1681 cccacccccc tccgaagttc ctcgatcagg gctggcatcg acgcacaggc ctgggcctgg
     1741 atgccggctt cgccgagcat ggctgtggcg acagccgcgt cgcggccacg gggcgccagg
     1801 accagggccc gttcggaatg gctgacggcg gtcagacggc accggcgtcc gaaagggact
     1861 cggacgattc taccaacgag gggacaccgc gcagcacgcc ctgaaacctg gcgagcggct
     1921 ggcccaaggt gatgccgtcc ttcccgatcc aatattcgcg gatcgtgtct tcatgcggtc
     1981 cggtccgctt tttcacgacc gacatggcgc gtcgaacgcg tccgaccgcc tcgaaataac
     2041 gcagcaggat cacggtgtcg gccagatagg tcacgtcgac gggagccttc atgtcgccga
     2101 caagtccatg ctgcgcgacc gtcagaaacg tggtggcacc ctggcggttc agatattgca
     2161 gcagctcgtg catgtgcagg atcagcgcct gctcgcccgg catggctgcc tgatagccat
     2221 tcaggctgtc gatgatcacg gtccgcgcac catgtccctc gacgccgcgg cggactcgtt
     2281 ccgaaaattc gccgggcgtc agctcggccg catcgacctg ttcgagcacg agctggtcgc
     2341 gatcgaccat cgcctgaaga tcgatgccga gcccgttggc acgctcgatc agcagcccaa
     2401 gctcctcgtc gaaaacgaac atggccgcgt tctcgccgcg cgccacggcc gcagcaatga
     2461 aagtgagcgc gagcagcgat ttgccggtgc ctgcgggacc aaggaccagc acgctcgaac
     2521 cacgctcgat cccgccgccc agcaatgcgt tgagttccgg cgacggcgaa tccagcattt
     2581 cgcgcttgaa gtccgagcgg tgctccgccg aaaccagccg ggggaagacg cgcacgccgc
     2641 ccgtaaggat cgcgaaatca tgatagccgc cgcggaaccg ccgcccgcga aatttgacga
     2701 cgcgcaggcg ccgtcgctcg ggtccgtagt ccggcgacaa ttcctccagg cggaccacgc
     2761 cgtgcgccac gctatggacc gtcttgtcat gctcttcgga cgtcaaatcg tcgagcatca
     2821 ccaccgtcgc gccctggcgc gcgaaataat gtttgagggc gagaacctgc cggcggtacc
     2881 gcaatgaact ctgcgcgagc agcctgatct ccgaaaggct gtccagcacg acgcgcgtgg
     2941 gccggatccg ttcgaaggtt tcgaaaatcc gcttggtggt ttcccccagc tccaggtccg
     3001 acgaataaag caggctttgc tgctggtctt catcgagcag gctttcgggt gggaccagct
     3061 cgtaaaggtc gattccatcg agcgaccagc cgtgcgatgc ggcgctcgcc cgcagctcgt
     3121 cctcgctctc cgaaaggctg acatacagga cgcgctcgcc cgcggctgcg cccgccagca
     3181 aaaattgagt tgcgatcgtg gtcttgcccg tccccggact gccctcgaac aggaagacgc
     3241 ggccgcgcgc caggccgccg gcaagcacat cgtccaatcc cacaacgccc gttgccgcaa
     3301 aatcgtcgaa cttcacccaa gactccgcag ctgttgaaac cgctcgaatc gccgaagatg
     3361 ccccgagccc cgacagccca ttcaggtggc acaatatacc gtcatcgcaa caaaatgcga
     3421 gggaattggt tcccgaaagc cggccagcgc ctgggccgcc acggtgcccg gcagatcagg
     3481 acggccggcg cgaaccgccg cgggctggaa ccgcgcatgc acctgctcta ggcgttgccg
     3541 atggcttcag acgtcactta tgcgtcctat ctcgcgctgg acgatattct tgccgcccag
     3601 catccgcgat caggccggca tgacgagctg ctgttcatca tcattcatca gacgaaggag
     3661 ctttggctca agcaggtcat tgtcgagctg aagctcgcca aggcccagat ttgcgaagac
     3721 gcgctggtgc ccgcgtacaa gagcctggct cgggtgtcgc ggattcaggc agtgatgacc
     3781 ctggcctggg acgtgctcgc gacgatgacg ccgtccgact attcgcagtt tcgcgatgtg
     3841 ctggggacga gctcgggctt ccagtcggac caattccgca ccgtcgaata tctgctgggc
     3901 ctgaaggacg gccggttcct tgcctatcaa aaggaccggc ccgaggcgga gcgggcaatg
     3961 gccgaggcct tgcaggaacc cagcttgtgg gacgatgcca tcgcggcact tgcgcgcgcg
     4021 ggattcgcgg tgccggcgag cgcgctcgag cgcgactgga cgcagcccta tgcgcccgat
     4081 ccccaggtcg agaccgcctg ggccgaagtc tatcgcgaca cggcgcgctg gtgggatctg
     4141 tatcagcttg ccgagaaact ggtcgacctc gacgatgcgc tcgcgacgtg gcgacataaa
     4201 catgtcgtga cggtcgagcg cgtgatcggc ggcaagcgcg ggaccggcgg gacggcaggc
     4261 gtcaaatatc tgcaggagac gctgggcaag cgcgcttttc ccgagctgtg gtcgttgcgg
     4321 acgctgcttt gagcggctgg aagcatctgt tccgccggac gctggatgca gcgcccgagc
     4381 ggctgcacat ggcggctcac agccatcatt tatggccgga tgcgagcttc gacgggcatt
     4441 accaggcctg ggaggatgcg gcgcggctgg ccgaccgcaa atgggatcgg atcatgggcg
     4501 agatctggcc cgaggcgcag cggcaggtcg ccgccgagct ggggctgccg gatcccgcga
     4561 ccaccgtctt cgcgcccaat acgcatgagc tgatcgtgcg gctggtctcg gccatcgagc
     4621 ggtctcgccc gctcaaggtg ctggcgagcg acggcgagtt ccacagcttc cgccgccagt
     4681 ccgcacgctg ggaagcggcg ggcgaaatgg cggtcacacg ggtggccgtc gagccgttcg
     4741 gcagcttttc cgagcgtttc ctggatgcgg cgcgcagggg cgacttcgac ctgatcttcg
     4801 tcagccatgt catgttcaac tccggcctgg tgttcgagaa cctcgctgag gtggcggccg
     4861 tcgatgggcc ctggatcgtc gtcgatggct atcacgcctt catggccata gagaccgacc
     4921 tcggcgcaat cgcagaccgt attttctacg ccgccggcgg gtataaatac gcgatggccg
     4981 gggaaggcgc ggcgtttctg cacgcgccgg ccggctttgg gccgcgcccg gtcaataccg
     5041 gctggtatgc cgagttcgac gatctgtcgc tgccgcccgg cgcggtcggc tatgcgccgg
     5101 acgcggggcg gttcatgggc tcgacgttcg atgcgtccgg gctctaccgc ttcgtcgccg
     5161 tgcgccacat gctggcggcc gaggggctga ccaccgccgc catcgccgcc catgtcgccg
     5221 gactccaggc gctattgttg cagatgacgc gcagcacggc gctcggcggg gccgaattgc
     5281 tcaatccgcc ggggcagggg ccgcatgcgc gcttcctcgc tttccgttcg ccgcacgcac
     5341 agcg
//
LOCUS       DASQVK010000192         2612 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_12701, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000192 DASQVK010000000
VERSION     DASQVK010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2612
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12701"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..990)
                     /locus_tag="VE567_04120"
     CDS             complement(<1..990)
                     /locus_tag="VE567_04120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HYZ48061.1"
                     /translation="MNEMARPDAFEKPRPIHRDPASAAVASLIAVLATIIGLILLAWT
                     VLYVTKGRFLKHTFEKYASRSAERDVRVAGDFQFYFNPIDIKFLAEGLTITNPKWAKQ
                     PYFLKSKLIDSEIETIPLIFGQRRADWLMLLNGDLDLAWSPDGKQNSWTMGKPTGKPL
                     ELPDIRRALIQGTRIRYTDPRMQFFADLGIDTVRAVDTRFASNVRFSGKGSLRNRPFT
                     VSGSLLSPNETVTGGRNQFRMHAQAARTMLDVSGTLPGATQIEGAPLDFRVRGYNIAN
                     LFDFIGVAVPGTRAYQLRSVLTKRDGVWHFERLRGRFGDSDLAGRLTVAMPANR"
     gene            1135..1338
                     /gene="rpmI"
                     /locus_tag="VE567_04125"
     CDS             1135..1338
                     /gene="rpmI"
                     /locus_tag="VE567_04125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007689506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HYZ48062.1"
                     /translation="MPKLKTKSGVKKRFTLTATGKLKHGVAGKRHRLISHNAKYIRQN
                     RGTSVLSDADTKTVKGWAPYGLK"
     gene            1352..1615
                     /gene="rplT"
                     /locus_tag="VE567_04130"
                     /pseudo
     CDS             1352..1615
                     /gene="rplT"
                     /locus_tag="VE567_04130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048646.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
     gene            complement(1708..2049)
                     /locus_tag="VE567_04135"
     CDS             complement(1708..2049)
                     /locus_tag="VE567_04135"
                     /inference="COORDINATES: protein motif:HMM:NF013964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HYZ48063.1"
                     /translation="MAVSRSRRARAARKRKRRLATVVNDLTTEQWVAIQAAWNGCAYC
                     GATGTPLQRDCVMAISRGGRYTIDNVVPACVPCNTSKCNEEVTTWLRRKRLDERAFLT
                     RYVEIRAALVG"
     gene            complement(2073..>2612)
                     /locus_tag="VE567_04140"
     CDS             complement(2073..>2612)
                     /locus_tag="VE567_04140"
                     /inference="COORDINATES: protein motif:HMM:NF023266.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ERAP1-like C-terminal domain-containing protein"
                     /protein_id="HYZ48064.1"
                     /translation="LGLAGLEVDTDLRWRIVTALAAAGVIDADGPVTPFIDAEAERDP
                     TAAGKRHAAQAAAARPQPAVKEGAWRQVVEDDTLPNITARSIIGGIVRPGQEELLQPF
                     VAKYFDAISGVWERRSSEVAQTVVIGLYPSWDISQAGLDAADAFLSDPEVPPPLRRLV
                     LEGRAGIERALRARAFDVS"
BASE COUNT          464 a          884 c          850 g          414 t
ORIGIN      
        1 ccgattcgcc ggcatcgcaa ccgtcagccg tccggccagg tcgctgtcgc cgaagcggcc
       61 gcgtagccgc tcgaaatgcc acacgccgtc gcgcttggtc agcaccgaac ggagctgata
      121 ggcgcgcgtg cccggcaccg cgacgccgat aaagtcgaac aaattcgcga tgttgtagcc
      181 gcgcacgcgg aaatcgagcg gcgcgccttc gatctgagtt gcccccggca gcgtgccgga
      241 cacgtcgagc atggtccgcg ccgcttgggc atgcatgcgg aactggttgc ggccgccggt
      301 caccgtctcg ttcggcgaca agaggctccc cgacacggtg aacggccggt tgcgcaggct
      361 gcccttgccg gagaagcgga cgttggatgc aaagcgcgta tccaccgcgc gcaccgtgtc
      421 gatgcccaga tcggcgaaga attgcatcct gggatcggtg tagcggatgc gcgtgccctg
      481 gatcagcgcg cggcggatgt ccggcagctc caggggcttg ccggtcggct tgcccatcgt
      541 ccagctgttc tgcttgccgt ccgggctcca ggcgagatcg aggtcgccgt tcagcagcat
      601 cagccagtcg gcgcgccgct ggccgaagat cagcggaatc gtctcgatct cgctgtcgat
      661 caacttcgat ttcaggaaat agggctgctt cgcccatttg gggttggtga ttgtcagccc
      721 ctcggcgaga aacttgatgt cgatcggatt gaaatagaac tggaagtcgc ccgcgacgcg
      781 cacatcgcgc tcggccgatc ggctggcgta tttctcgaac gtgtgcttca ggaaccggcc
      841 cttcgtcacg tagagcacgg tccaggcaag caggatcagg ccgatgatcg tggcgagcac
      901 cgcgatcagg ctcgcgaccg ccgcgctggc cggatcgcgg tggatcgggc gcggcttttc
      961 gaacgcgtcg ggccgggcca tctcgttcat gacgagactc aacccctcgc gctgggatcg
     1021 gttgcaatta ttgccgccgg ccgctagagg cgcgcgcttc gcgatcgaga ggactgcccg
     1081 gccagtgtgg gctgccgtgg ccgtccgtaa tcgtcgaaac acgaaaggac gaaaatgccc
     1141 aagctcaaga ccaagagcgg tgtgaagaaa cgcttcacgc tcaccgcgac cggcaagctg
     1201 aagcacgggg tggccggcaa gcgccaccgc ctgatcagcc acaacgccaa atatatccgc
     1261 cagaaccgcg gcacttcggt gctgtccgac gccgacacca agaccgtgaa gggctgggcg
     1321 ccctacggcc tgaagtaagg aggaacggac aatggcacgt gtcaaacgcg gcaccaccac
     1381 caaggcgaag cacaagcgga ttctcgatca ggcgaagggc tattatggcc gtcgcaagaa
     1441 cacgatccgc atcgcgcgcc aggccgtcga gaaggccggg caatacgcct atcgcgaccg
     1501 caaggtcaaa aagcggagct tccgcgcgct ctggatccag cgcattaacg ccgccgcccg
     1561 ggccgagggc ctgacctatg gcgtgttcat gcacgggctg aagctcgccg gcgtctcacc
     1621 ccgctgacgt cttcggccga gcgaccgtgt ctgcacgccg acacaccgcg aatacctgtg
     1681 caaacgcggt cgctcgcgct gggggcctca gcccacgagc gccgctcgga tctccacgta
     1741 gcgcgtcaaa aaggcgcgct cgtcgagccg cttgcggcgc agccacgtgg tgacttcttc
     1801 gttgcacttg ctggtgttgc agggcacgca ggcgggcacg acgttgtcga tcgtgtagcg
     1861 cccgccgcgc gagatagcca tgacgcagtc gcgctgcagc ggagtgcctg tcgcgccgca
     1921 gtaggcgcac ccgttccagg cggcctggat tgcaacccac tgctcggtgg tgaggtcgtt
     1981 gacgacggtg gccagccggc gcttccgctt gcgggcagcc ctggctctgc gacttcgact
     2041 gaccgccatc catcgagcgt atggcgcaga cgtcagctca cgtcgaaggc gcgcgctcgc
     2101 aatgcccgct cgataccggc gcggccctcg agcaccagcc gccgcagcgg cggcggcacc
     2161 tccggatccg acaggaaagc atcggcggcg tcaagacccg cctggctgat gtcccacgac
     2221 gggtacaacc cgatcacgac ggtctgggcg acctcgctcg aacgccgttc ccacacaccg
     2281 gaaatcgcgt cgaagtactt cgcgacgaac ggctgcagca gctcctcctg accgggccgc
     2341 acgatcccgc cgatgatcga ccgcgcggtg atgttgggca gtgtgtcgtc ctcgacgacc
     2401 tgccgccagg cgccctcctt caccgcgggt tgtggccgcg cagccgccgc ctgtgcggca
     2461 tgccgcttgc ccgcagcggt cggatcgcgt tcggcctcgg catcgatgaa cggcgtcacc
     2521 gggccgtccg catcgatcac gcccgccgcg gccaacgcgg tgacaatgcg ccaacgcaga
     2581 tcggtgtcga cttcaaggcc cgccaacccc ag
//
LOCUS       DASQVK010000193         3991 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_265888,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000193 DASQVK010000000
VERSION     DASQVK010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3991)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3991)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3991
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265888"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..439)
                     /locus_tag="VE567_04145"
     CDS             complement(<1..439)
                     /locus_tag="VE567_04145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HYZ48065.1"
                     /translation="MAKIKVKNPVVELDGDEMTRIIWAWIRERLILPYLDIELEYYDL
                     GVEKRDETEDKITVEAARAIKKHGVGVKCATITPDEARVKEFNLKKMWKSPNGTIRNI
                     LGGVVFREPIVIANVPRIIPGWTDPIVVGRHAFGDQYKATDFLI"
     gene            551..1285
                     /locus_tag="VE567_04150"
     CDS             551..1285
                     /locus_tag="VE567_04150"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004609 - phosphatidylserine decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HYZ48066.1"
                     /translation="MASLEKPPLTTTTVKWRWPSVHPDGRKFVVISAVVTFIFAWMAW
                     ETLAWPMAAVTIWVAAFFRDPIRSVPQGDGLIVAPADGLVTLIQTVPPPRELAGEDGL
                     GDQPMTRVSIFMSVFDVHINRAPVAGTIRTIVYISGKFLNADLDKASEDNERQHFIVE
                     SADGVRIGFTQIAGLIARRIVPFVKPGDVVTRGERVGLIRFGSRVDVYLPAGTSPRVA
                     LGQRTIAGETVIARIGEAEAAIGLPQ"
     gene            1282..2079
                     /locus_tag="VE567_04155"
     CDS             1282..2079
                     /locus_tag="VE567_04155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017671551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylcholine/phosphatidylserine synthase"
                     /protein_id="HYZ48067.1"
                     /translation="MTPDQLRRGISLRAVAPNAVTALALCMGLTGIRFAIGGEWDRAL
                     AAIIIAGVLDGLDGRIARLLKGESRFGAELDSLSDVIAFGVSPAIILYLWSLQQLPRY
                     GWLFALGHAVCCALRLARFNANIDAKEQPHKSAGFLTGVPAPAGAGLALLPIYIWLWS
                     GEETLRAVWIVAPWMALVAFLMISNVATFSWSSLRLRRTIRLEAIAGVALLGGALVTA
                     PWETLTVVALLYLAMIPFSIRSYGRVKRRRAAVAAAGAAPSGSTRAA"
     gene            complement(2012..2236)
                     /locus_tag="VE567_04160"
     CDS             complement(2012..2236)
                     /locus_tag="VE567_04160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48068.1"
                     /translation="MAQLFSAIFFCLACIAALAMIATMLHGEWARVAAILSGRELAVA
                     RATVPQMRVRLRASSRTEPRRPPQPLRAAA"
     gene            2423..3196
                     /gene="rpsB"
                     /locus_tag="VE567_04165"
     CDS             2423..3196
                     /gene="rpsB"
                     /locus_tag="VE567_04165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HYZ48069.1"
                     /translation="MAAPTVSLQALVEAGAHFGHQTHRWNPKMKPYIYGERNGVHILD
                     LSQTVPLFARALEFISSSVAAGGKVLFVGTKRQAQEPIAEAARRSGQHFVNHRWLGGM
                     LTNWKTISNSIKRLKSLEEMLAGDTHGLTKKEVLQLTRERDKLELSLGGIRDMGGIPD
                     VMFVIDANKEELAIKEANTLGIPVVAILDSNVSPDGIAFPVPGNDDASRAIRLYCDAV
                     AQSATRGGQQGQAARGADIGAMAEPPAEEALGQDEVAAA"
     gene            3284..>3991
                     /gene="tsf"
                     /locus_tag="VE567_04170"
     CDS             3284..>3991
                     /gene="tsf"
                     /locus_tag="VE567_04170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HYZ48070.1"
                     /translation="MAEITAAMVKDLRERSGAGMMDCKKALAETGGDIEAAVDWLRAK
                     GLASAGKKAGRTAAEGLVGVATAGTKGVVVEINSETDFVAKNEQFQAFVRDVTQLALS
                     AGDDVEALLSATMPNGQTVQEALTANIATIGENQNLRRAKALSVSQGVVVPYVHNAAA
                     PGMGKIGVLVALEGDAPTDRMEALGRQLAMHVAAAYPLALSGEDIDPAIIEREAAIAK
                     EKAADKIAGKPPEVVEKI"
BASE COUNT          676 a         1260 c         1361 g          694 t
ORIGIN      
        1 ggatgaggaa gtcggttgcc ttatactggt cgccgaaggc gtggcggccg acgacgatcg
       61 ggtcggtcca gccggggatg atgcgcggga cgttggcgat gacgatcggc tcgcggaaga
      121 cgacgccgcc caggatgttg cggatggtgc cgttcggcga cttccacatc ttcttgaggt
      181 tgaattcttt cacccgcgct tcgtccgggg tgatggtcgc gcatttgacg ccgacgccgt
      241 gcttcttgat ggcgcgtgcg gcctcgaccg tgatcttgtc ctcggtctcg tcccgcttct
      301 cgacgcccag gtcataatat tcgagctcga tgtcgagata ggggaggatc agccgctcgc
      361 ggatccaagc ccagatgatc cgcgtcatct cgtctccgtc gagttcgaca acggggttct
      421 tcaccttgat cttggccatc gagcgtcttt cctgaatgaa gggttgcggg ggctcttagg
      481 cggcggtggc ggaacgatca acggggcttc cggcgttgtg aagcgcgcaa ccccagccta
      541 aacggacact atggcatcac ttgaaaagcc gccgcttacg accaccaccg tcaaatggcg
      601 ctggccatcg gtgcaccccg acggacgcaa attcgtcgtg atctcggcgg tcgtcacctt
      661 catcttcgcc tggatggcct gggagacttt ggcctggccg atggccgcgg tgaccatctg
      721 ggtagcagcg tttttccgcg atccgatccg cagcgtgccg caaggcgacg gcctgatcgt
      781 cgcgccggca gacgggctgg tgacactgat ccagacggta ccgccgccgc gcgagctggc
      841 cggggaggat gggctgggcg atcagcccat gacgcgcgtc tccattttca tgagcgtgtt
      901 cgacgttcac atcaatcgcg cacccgtcgc ggggacgatc cgcacgatcg tctatatctc
      961 gggcaaattt ctcaatgcgg atctcgacaa ggcgagcgag gacaatgagc ggcagcattt
     1021 cattgtcgaa agcgcggacg gggtgcggat cggcttcacc cagattgccg gcttgatcgc
     1081 gcggcggatc gtgccgtttg tgaagccggg cgatgtggtg acccgcggcg agcgagttgg
     1141 gctgatccgc ttcggcagcc gcgtcgatgt ctatctgcct gccgggacga gtccgcgcgt
     1201 ggcgctgggc cagcgcacca ttgccggcga gacggtgatc gccaggatcg gcgaggccga
     1261 ggcggctatc ggccttccgc aatgacgccg gaccagctga ggcgcggcat ttcgctccgg
     1321 gccgtggcac ccaacgccgt cactgcgctc gcgctctgca tgggcctgac cggaatccgg
     1381 ttcgcaatcg gcggggaatg ggaccgtgcg ctcgccgcga tcatcatcgc cggcgtgctc
     1441 gatgggctcg acggccgcat cgcgcggttg ctgaaaggcg agagccggtt cggcgccgaa
     1501 ctcgactcgc tgtccgacgt gatcgcgttc ggcgtgtcgc cggcgatcat cctctatctc
     1561 tggtcgctcc agcagctgcc gcgctatggc tggctctttg ccctcggcca tgccgtgtgc
     1621 tgcgctctgc gcctcgcgcg cttcaacgcc aatatcgatg cgaaggagca gccgcataag
     1681 tcggcgggct tcctgaccgg cgtgccggcg ccggcagggg cggggctcgc gctgctgccg
     1741 atctatatct ggctctggtc gggcgaggag acattgcgcg ctgtctggat cgtcgcgccc
     1801 tggatggcgc tggtcgcttt cctgatgatc tccaatgtcg cgacgttcag ctggtcgtcg
     1861 ttgaggctgc ggcgcacgat ccggctggaa gcgatcgccg gcgtcgcgct gctcggcggg
     1921 gcgctcgtca ccgcgccctg ggagacgctg accgtcgtag cactcctcta cctcgcgatg
     1981 atcccgttca gcatccgctc ctatgggcgg gtcaagcggc ggcgcgcagc ggttgcggcg
     2041 gccggcgcgg ctccgtccgg ctcgacgcgc gcagcctgac ccgcatttgc gggacggtgg
     2101 cacgcgcaac cgccagttcg cggccgctca ggatggcggc gacacgtgcc cattcgccgt
     2161 gaagcatcgt cgcgatcatg gccagtgcgg cgatgcacgc caagcagaag aagatagccg
     2221 agaaaagctg cgccatcaga actctccctg tctctgttac gccctatgtt cactatttgt
     2281 tccatgcttg tcaagcttgc attcggggcg cttcatcgct aagtggccgc gcattccgca
     2341 tggatggcgc tcataccggt gtctctcgcc tggcgaggga tcacagccat ccagaggtat
     2401 aaccgggtag gagatacatg acatggcggc acccaccgtc tctttgcagg cgctcgtcga
     2461 agcgggcgcg catttcggcc accagacgca tcgctggaac cccaagatga agccgtacat
     2521 ctacggcgag cgcaacgggg tgcacatcct cgacctgtcg cagaccgtgc cgctgttcgc
     2581 acgcgcgctg gagttcatca gctcgtcggt tgcggcgggg ggcaaggtgc tgttcgtcgg
     2641 caccaagcgc caggcgcagg agccgatcgc ggaagcggcg cggcgttcgg gccagcattt
     2701 cgtcaaccat cgctggctgg gcggcatgct caccaactgg aagacgattt ccaactcgat
     2761 caagcggctg aagtcgctcg aggagatgct ggccggcgac acgcacggcc tcaccaagaa
     2821 ggaagtgctg cagctcaccc gcgagcgcga caagctcgag ctgtcgctgg gcggcatccg
     2881 cgacatgggc ggcatcccgg acgtgatgtt cgtgatcgac gccaacaagg aagagctcgc
     2941 gatcaaggaa gccaatacgc ttggaattcc ggtcgtcgcg atcctcgatt cgaacgtgtc
     3001 gccggacggc atcgccttcc cggtcccggg caatgacgac gccagccgcg cgatccggct
     3061 atattgcgac gcggtagccc agtctgccac gcgcggcggc cagcagggcc aggcggcgcg
     3121 cggtgcggac atcggcgcga tggccgagcc cccggcggaa gaagcgctgg gccaggacga
     3181 agtcgccgca gcttgagctt cggcctcgca gggggcctgt cacattcgcg aaacgcgctg
     3241 cgcccacggg cgtagcgcga cgcacaacat gaggaacgga aacatggcgg aaatcacggc
     3301 cgcgatggtg aaagatttgc gcgagcgctc gggcgccggc atgatggact gcaagaaggc
     3361 gctcgccgag accggtggcg acatcgaggc cgcggtcgac tggctgcgcg ccaagggctt
     3421 ggcttcggcg ggcaagaagg cgggccgcac ggcggccgag ggcctggtcg gcgtcgccac
     3481 cgcgggcacc aagggtgtgg tcgtcgagat caactccgag accgacttcg ttgccaagaa
     3541 cgagcagttc caggcgttcg tccgtgacgt gacgcaactg gcgctgagcg ccggcgatga
     3601 cgtcgaggca ctgctgagcg cgacgatgcc gaacggccag accgtccagg aagcgctgac
     3661 cgccaatatt gcaacgatcg gagagaacca gaatcttcgc cgtgccaagg cgctcagcgt
     3721 cagccagggc gtggtcgtgc cgtatgtcca caacgccgcg gcacccggca tgggcaagat
     3781 cggcgtgctg gtcgcgctcg aaggcgacgc gccgacggac cggatggaag cgctgggccg
     3841 gcagctcgcg atgcacgtcg cggccgctta tccgctcgcg ctcagtggcg aagatatcga
     3901 cccggcgatc atcgagcgcg aagccgcgat cgccaaggaa aaggcggccg acaagatcgc
     3961 cggcaagccg cccgaagtgg tcgagaagat c
//
LOCUS       DASQVK010000194         2467 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_43961, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000194 DASQVK010000000
VERSION     DASQVK010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2467)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2467)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2467
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43961"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..325)
                     /locus_tag="VE567_04175"
     CDS             complement(<1..325)
                     /locus_tag="VE567_04175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013039294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TGS domain-containing protein"
                     /protein_id="HYZ48071.1"
                     /translation="MSEMIRITLPDGSAREVAPGTTAAEIAAAIGPGLAKAALAARVD
                     GEVRDLGRPIERDAELALITARDEADALELVRHDYAHVLAEAVQNLYPGTQITFGPAT
                     EDGFYY"
     gene            530..784
                     /locus_tag="VE567_04180"
     CDS             530..784
                     /locus_tag="VE567_04180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6356 family protein"
                     /protein_id="HYZ48072.1"
                     /translation="MFNKLFRNHPREVGETYVEHFAAAGGFGLKMIAGGAACVVHAIV
                     PGLFVTTGSGTVKKLYDQMVAKRNAKRLANIEMRSIEWVI"
     gene            792..1517
                     /locus_tag="VE567_04185"
     CDS             792..1517
                     /locus_tag="VE567_04185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017671675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYZ48073.1"
                     /translation="MTQFFDRPGSPRLAYELREGNGPALVFLPGYASDMAGTKAVELD
                     AWAAAQGRAMLRFDYSGCGESEGRFEDGTLAVWRDDALALIDALTAGPLVLVGSSMGG
                     WIGLLVAEARPERIAAFVGIAAAPDFTDWGFSAEEKMRLLREGRLERPSDYGAPLVTT
                     RGFWQSGEALRMLHRTIAIDRPVRLLHGQRDPDVPWHHSTHLAGQLRSADVQTILVKD
                     GDHRLSRPQDLDLLIATVASLPA"
     gene            1522..2238
                     /locus_tag="VE567_04190"
     CDS             1522..2238
                     /locus_tag="VE567_04190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010407087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYZ48074.1"
                     /translation="MILLALLAATASAQSCADEIKANPVQAVEKANAWHSAGGGALAR
                     QCAALAYAAQDRWTEAAEAFEQAAREAEKAKEAAAANLWVQAGNARLAAGEPRPAIAA
                     LDAALVTGMLNGIAKGEARVDRARANVAAGDLAAARTDLDEALKLVPKDPLAWLLSAS
                     LARRMGQQERAQVDIAEAAKLSPDDASVALEAGRIALAAGAPAAARVAWEGAIKNQPG
                     SEAARAAQAELDRLAKPSQR"
     gene            2243..>2467
                     /locus_tag="VE567_04195"
     CDS             2243..>2467
                     /locus_tag="VE567_04195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010218478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYZ48075.1"
                     /translation="MKYLHTMIRVTDPEATVRFFEMIGLKEVRRFDNEAGRYTLIFMA
                     APGQEGVAEVELTHNWDPQDYAGGRNFGHLA"
BASE COUNT          402 a          808 c          874 g          383 t
ORIGIN      
        1 cgtagtagaa accgtcctcg gtcgcgggac cgaaggtgat ctgcgttccg ggatagaggt
       61 tctgcaccgc ctcggcgagg acgtgggcat aatcgtgccg caccagctcc agcgcgtcgg
      121 cctcgtcgcg cgcggtgatc agcgccagct ccgcgtcgcg ctcgatcggg cggccgagat
      181 cgcgcacttc gccgtcgacc cgcgccgcca gcgccgcctt ggcgagcccc ggcccgatcg
      241 ccgccgcaat ctcggccgcg gtggtccccg gcgcaacttc gcgcgcggag ccgtcgggaa
      301 gggtgatgcg gatcatttcg gacatgctgg cgcacatagc gtttcgacca atccggacaa
      361 gtcgcacgtt caagcgttgc gagcgcgcgc gaatgggcag ttgcgcgcaa tctgctcgac
      421 tcggtctcca agccgctaaa gacggtgcga caagcgtccc gctgtgatag cgccgcaggg
      481 tcggctgcaa agccgataga attcctcgac tcgaagggtg ggacgatcga tgttcaacaa
      541 gctgttccgg aatcatccgc gcgaagtcgg cgaaacctat gtcgagcatt tcgccgctgc
      601 gggcgggttc gggctcaaga tgatcgccgg gggcgccgcc tgcgtggtcc atgcgatcgt
      661 gccgggcctg ttcgtcacca ccggcagcgg cacggtcaag aagctctacg accagatggt
      721 cgcaaagcgg aatgcgaagc gcctggcgaa tatcgagatg cgctcgatcg aatgggtgat
      781 ctgagcggcg cgtgacccag tttttcgacc ggccgggctc gccgaggctc gcctatgaac
      841 tgcgcgaagg aaacggccct gcgctcgtct tcctgcccgg ctacgcatcg gatatggccg
      901 gaaccaaggc ggtggaactc gatgcctggg cggcggcgca aggccgggcg atgctgcgat
      961 tcgactattc gggctgcggg gaaagcgagg ggcggttcga ggacgggacg ctcgccgtct
     1021 ggcgcgacga tgcgctggcg ctgatcgacg cgttgaccgc gggcccgctg gtgctggtcg
     1081 gatcatcgat gggcggctgg atcgggctgc tggtggcgga agcacggccg gagcgcatcg
     1141 ctgcctttgt cggtatcgca gcggcgcccg atttcacgga ttggggcttc agcgcggaag
     1201 aaaagatgcg gctgttgcgc gagggccggc tggagcgccc gtccgactac ggcgcgccgc
     1261 tcgtcaccac ccgcggcttc tggcagtcgg gcgaggcgtt gcgcatgctt caccgcacga
     1321 ttgcgatcga ccgccccgtc cgcctgctcc acggccagcg tgatccggac gtgccttggc
     1381 atcattcgac acacctggct ggccagcttc gttcagccga cgtgcagacg attctggtca
     1441 aggatggcga ccacaggctg tcgcggccgc aggatctcga cctgctgatc gcgacggtcg
     1501 cttccttgcc ggcatgacgt catgatcctt ctcgctctcc ttgcggcaac ggcttcggcc
     1561 cagagctgcg ccgacgaaat caaggccaat ccggtccagg cggtcgagaa agcgaatgcc
     1621 tggcattcgg cggggggcgg cgcgcttgcc cggcaatgcg cggcgctcgc ctatgcggcg
     1681 caggaccgct ggaccgaagc cgccgaggca ttcgagcagg ccgcgcgcga ggcggaaaag
     1741 gcaaaggaag ccgccgccgc caatctgtgg gtgcaggcgg gcaatgcccg gctggcagcg
     1801 ggcgagcccc ggccggcgat tgcggcgctg gacgcggcgc tggtgaccgg catgctgaac
     1861 ggcatcgcca aaggcgaagc gagggtggac cgggcgcgcg ccaatgtcgc cgccggtgat
     1921 cttgccgccg cccgcaccga tctcgacgaa gcgctcaagc tggtgccgaa ggatccgctc
     1981 gcctggctgc tgtccgcttc gctggcgcgc cggatggggc agcaagagcg cgcccaggtc
     2041 gatatcgcgg aagccgcgaa gctgtcgccc gacgacgctt cggtcgcgct cgaagccggg
     2101 cggatcgccc tcgccgccgg cgctcccgcg gcggcgcgcg tggcctggga aggcgcgatc
     2161 aagaaccagc ccggcagcga ggcggcgcgc gccgcccagg ccgagcttga ccgactcgcc
     2221 aagccgagcc agcggtgacg ccatgaaata tctgcacacg atgatccggg tcacggaccc
     2281 cgaggccacg gtccgcttct tcgagatgat cgggctgaaa gaggtccgcc gcttcgacaa
     2341 tgaggccggc cgctacacgc tgatcttcat ggccgcgccg ggccaagagg gggtggccga
     2401 ggtcgagctc acccataatt gggacccgca ggactatgca ggcggccgca atttcggcca
     2461 cctcgct
//
LOCUS       DASQVK010000195         3205 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_392607,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000195 DASQVK010000000
VERSION     DASQVK010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3205)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3205
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392607"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..654
                     /locus_tag="VE567_04200"
     CDS             <1..654
                     /locus_tag="VE567_04200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HYZ48076.1"
                     /translation="EGIKAHCPNAFVIVITNPLDVMVWVMQQKSGLPANKVVGMAGVL
                     DSSRFRLFLAQEFNVSVEDVTAFVLGGHGDTMVPVVEYSTVAGIPIPDLIKMGWSTQE
                     RIDAIVQRTRSGGGEIVALLKTGSAYYAPATSGIEMAEAYLKDKKRLLPCAAYLDGQY
                     GQNGLYVGVPVILGAGGVEKIVEIALNDQAKANFQTSVDAVKELMVACQGIDATLKG"
     gene            892..1776
                     /gene="sucD"
                     /locus_tag="VE567_04205"
     CDS             892..1776
                     /gene="sucD"
                     /locus_tag="VE567_04205"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007684281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HYZ48077.1"
                     /translation="MSILVNANTKVITQGFTGAQGTFHSEQAIAYGTKVVGGVTPGKG
                     GTTHIGLPVFDTVEEAVQKTGADASVIYVPPPFAADSILEAIDAEVPLIVCITEGIPV
                     LDMVKVKRALSASKSRLIGPNCPGVLTPEECKIGIMPGNIFKKGSVGVVSRSGTLTYE
                     AVFQTTNAGLGQTTAVGIGGDPVNGTNFIDVLELFLADDETKSIIMIGEIGGDAEEQA
                     AQFLIDEAKRGRSKPTVGFIAGRTAPPGRRMGHAGAIVSGGKGGAEDKIAAMEAAGIR
                     VSPSPAELGETLMALLNG"
     gene            1812..>3205
                     /locus_tag="VE567_04210"
     CDS             1812..>3205
                     /locus_tag="VE567_04210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HYZ48078.1"
                     /translation="MGYEGQSFDIEGVSPSFVEALYRNYVANPGSVEPSWRDFFEGLE
                     ASTSGPSWRRTNWPLADTDALTAALDPTQSAIPPKPDAKKAAPAAAAPDTDAIAKAAA
                     DSIRAMLLIRTYRVRGHLAAQLDPLGLVKRELPADLTPEYHGFSGADLDRPIYLGGVL
                     GLERASVREIVAILQRNYCGPVGLEYMHIADTEERRFLQERMEGKDKAIEFTPEGKKA
                     ILSAVIRGEQFEKFLGRKYVGTKRFGLDGGEAMIPALEAVIKYGGAMGVREIVYGMAH
                     RGRLNVLANVMAKPFRVIFHEFSGGSANPEDVGGSGDVKYHLGTSTDREFDGISVHMS
                     LVPNPSHLEAVDPVVLGKARAKQTKIDDLKRERVLPILIHGDAAFAGQGIVMECFGFS
                     GLPGYSTGGCIHFVINNQVGFTTSPQFARSSPYPSDIAKAVQAPILHVNGDDPEAVTF
                     ACKLAIEYRQRFKR"
BASE COUNT          591 a         1053 c         1017 g          544 t
ORIGIN      
        1 gaaggcatca aggcgcattg cccgaatgcc ttcgtcatcg tcatcaccaa cccgctggac
       61 gtgatggtgt gggtgatgca gcagaaatcc ggcctgccag ccaacaaggt ggtcggcatg
      121 gcgggcgtgc tggacagctc gcgcttccgc ctgttcctgg cccaggagtt caacgtctcc
      181 gtcgaggacg tcaccgcctt cgtgctcggc ggccatggcg acacgatggt ccccgtggtc
      241 gaatattcga ccgttgccgg catcccgatc cccgacctca tcaagatggg ctggtcgacc
      301 caggagcgta tcgacgcgat cgtccagcgc acccgctccg gcggcggcga gatcgtcgcg
      361 ctgctgaaga ccggctcggc ctattacgca cccgccacca gcggcatcga aatggccgag
      421 gcgtatctga aggacaagaa gcgcctcctc ccctgcgctg cctatctgga tggccaatac
      481 ggccagaacg gcctctatgt cggcgtgccg gtgatcctcg gcgccggcgg cgtcgaaaag
      541 atcgtcgaga tcgcgctcaa cgatcaggcc aaggccaact tccagacctc ggtcgacgcg
      601 gtcaaggaac tcatggtcgc ctgccaaggc attgacgcga ccctgaaggg ctgaaggtaa
      661 aacagagtgc gccttacgtc ttcggccctt ggcctagcac tactcgtctg tgcgatgcca
      721 agctccgctt ttggggctgc gctcgatgcg acttcgcagc gcacggtaaa ggccttcgag
      781 gagatttgcc ttgctaatgc gggctgatgc gggcgtctcc ctaacaattt actcaaacgt
      841 gtcaccgcgc acgccaatca ttgccctcaa agcaaaaggg tccaaagttc aatgagcatt
      901 ctcgtcaacg cgaacaccaa ggtgattacc cagggcttta ccggcgccca gggcacattc
      961 cattccgagc aggcgatcgc ctatggcacc aaagtcgtcg gtggcgtcac ccccgggaag
     1021 ggcggcacga cgcatatcgg cctgccggtg ttcgatacgg tggaagaggc ggttcagaag
     1081 accggcgccg atgcgtccgt catctatgtg ccgccgccct tcgccgcaga ctcgatcctg
     1141 gaagcgatcg atgcggaagt gccgctgatc gtctgcatca ccgaaggcat tccggtgctc
     1201 gatatggtga aggtgaagcg cgcgctctcc gcttccaagt cgcggctgat cgggcccaat
     1261 tgcccgggcg tgctgacgcc ggaagagtgc aagatcggca tcatgccggg caacatcttc
     1321 aaaaagggct cggtcggcgt cgtttcgcgc tccggcaccc tcacctatga agcggtgttc
     1381 cagaccacga acgcgggcct gggccagacc accgcggtcg gcatcggcgg cgatccggtc
     1441 aacggcacca atttcatcga cgtgctggag ctgttcctgg cggacgacga gaccaagtcg
     1501 atcatcatga tcggcgagat cggcggcgat gccgaggagc aggcggcgca gttcctgatc
     1561 gacgaggcga agcgcgggcg gtccaagccc accgtgggct tcatcgccgg ccgcacggcg
     1621 cctccgggcc gccgcatggg ccatgccggc gcgatcgtct cgggcggcaa gggcggcgcc
     1681 gaagacaaga tcgccgcgat ggaagcggca ggcattcgcg tcagccccag ccccgcggag
     1741 ctcggcgaaa cgttgatggc gctgttgaac gggtaagcgc gaccccattt tcaggggcgg
     1801 cgaggtgtat catgggttat gaaggccaat cgttcgacat cgaaggcgtc tcgccctcgt
     1861 tcgtcgaggc gctctatcgc aattatgtcg cgaaccccgg ctcggtcgag ccgagctggc
     1921 gcgacttctt cgaggggctg gaggccagca ccagcgggcc gagctggcgg cggaccaact
     1981 ggccgctcgc cgacaccgac gcgctgaccg ccgcgctcga ccccacgcag agcgcgattc
     2041 cgcccaagcc cgacgcgaaa aaggcggctc cggcggcggc cgcgccagat actgacgcga
     2101 tagccaaggc cgccgcggac tcgatccgcg cgatgctcct catccgcacc tatcgcgtgc
     2161 gcgggcatct ggcggcgcag ctcgacccgc tgggcctcgt caagcgcgag ctgccggccg
     2221 atctgacgcc tgaatatcac ggcttttccg gcgccgatct cgaccgtccg atctatctgg
     2281 gcggcgtgct cgggctcgag cgggcgtcgg tgcgcgaaat cgtcgcgatc ctgcagcgca
     2341 attactgcgg gcccgtcggc cttgaatata tgcacatcgc cgacaccgag gagcggcggt
     2401 tcctccagga gcggatggaa ggcaaggaca aggccatcga gttcacgccg gaaggcaaga
     2461 aggcgatcct gtcggcggtc atccgcggcg agcaattcga gaaattcctc ggccgcaaat
     2521 atgtcggcac caagcgcttc gggctcgacg gcggcgaagc aatgatcccg gcgctcgagg
     2581 cggtgatcaa atatggcggc gcgatgggcg tgcgcgagat cgtgtacggc atggcgcacc
     2641 gcggccgtct caacgtgctc gccaatgtga tggcaaagcc gttccgcgtc atcttccacg
     2701 aattctcggg cggctccgcc aatcccgagg atgtcggcgg ctcaggcgac gtcaaatacc
     2761 atctcggcac gtccaccgat cgcgagttcg acgggatcag cgtgcatatg tcgctggtgc
     2821 cgaacccctc ccatttggag gcggtcgacc ccgtcgtgct cggcaaggcg cgcgccaagc
     2881 agaccaagat cgacgacctc aagcgcgagc gggtgctgcc gatcctgatc cacggcgacg
     2941 ccgcctttgc cgggcagggc atcgtcatgg aatgtttcgg cttctcgggc ctgcctggct
     3001 attcgaccgg cggctgcatc catttcgtga tcaacaacca ggtcggtttc accacctcgc
     3061 cgcaattcgc gcgctcgtcg ccctacccat cggacatcgc caaggccgtc caggcgccga
     3121 tcctccacgt caacggcgac gatccggagg cggtgacctt cgcctgcaag ctcgccatcg
     3181 aatatcgcca gcgcttcaag cgcga
//
LOCUS       DASQVK010000196         8476 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_108105,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000196 DASQVK010000000
VERSION     DASQVK010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 8476)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8476)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8476
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108105"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(129..584)
                     /locus_tag="VE567_04215"
     CDS             complement(129..584)
                     /locus_tag="VE567_04215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48079.1"
                     /translation="MSRLRTPYCAAIGLRRREVDEIRISIGIEVSRLTQVECRNAEVD
                     ADLDRERGVAAGALNIPVTAYFARMQAERRRLEEERQAINGRVARLRSQAREAYGSLN
                     AIEGAAQRYRDEALHKIESAEQAATDDRSAADFVARARLIRTASAKRSP"
     gene            complement(581..1917)
                     /gene="fliI"
                     /locus_tag="VE567_04220"
                     /pseudo
     CDS             complement(581..1917)
                     /gene="fliI"
                     /locus_tag="VE567_04220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007684999.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
     gene            complement(1925..2323)
                     /locus_tag="VE567_04225"
     CDS             complement(1925..2323)
                     /locus_tag="VE567_04225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010410955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis repressor FlbT"
                     /protein_id="HYZ48080.1"
                     /translation="MLRITLRDGEKVVVNGAVLSAVGRTTLLVENKATILRGREVMTP
                     EEATTPARQLYFHTIMAYMDEENREEHQDRIVESLRKVAALLPDQEALAATVAFASKA
                     AHLQFYKALADCRQLMRLEAEALDQLDAAA"
     gene            2486..3787
                     /gene="flgE"
                     /locus_tag="VE567_04230"
     CDS             2486..3787
                     /gene="flgE"
                     /locus_tag="VE567_04230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HYZ48081.1"
                     /translation="MSLYSALYAGVSGLGAESTAMATVADNITNINTIGYKGVSAEFR
                     TLVTDGRLRSTYSAGGVAAAPQAMISKQGLLQASAGDTDLGIDGAGFFVTRNGTGSNA
                     EVAFTRAGAFKPDLQGFLRNTSGYYLQGWRLDSQGNYVDTGSLNALEPVRVSELTGSA
                     AATSRIQMRANLRADEVTYTGAYTAGDMASGTVAPQFTRSMDIYDAQGSTHRITLAYL
                     KTGANQWASEIYAVPATDVTAAGGLLASGNIAFNSDGSLDRAGSTPALFNPLNITWTN
                     GAAAEPIDLAFGTDGGLDGLTQFSGESALISSAVNGGLLGTIASVEVSEQGVVSAVFS
                     DGTARAVFQLPIATFQNPDGLTRVAGNAYMTSSASGNVAINRPGILGSGMISPGTLEA
                     STVDLAQEFTNMIRFQRAYSASSKVITTVDDMLQELNNLKR"
     gene            3834..5933
                     /gene="flgK"
                     /locus_tag="VE567_04235"
     CDS             3834..5933
                     /gene="flgK"
                     /locus_tag="VE567_04235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009424 - bacterial-type flagellum hook
                     [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HYZ48082.1"
                     /translation="MSLNDILGSALAGLGASQAGMRTVSNNVANVNTPGYARERVSLS
                     TGVTAGRVNGVSVGEPERIADRFLEATVYRRSGEFGRADVTANYLNRLQSLLGEPGSQ
                     SSVAARLDAVSAAAVAMTGSPGSEQTIAAFTQQVGDAISSMQQLNTDVGTLRAEVESE
                     VGYTVDRINGLLQQVHQLNDTIARQGGLGRSISGAADQRMSALEELSSLVNVTVREQP
                     DGRVTIDSASGAVLLDRRLRQLSYPIAGDGVSQPTYPPIDIRFADDSGNMGAATGDKL
                     DSASVGGKLGGLIDLRDRALPAFADKVGIIFGGVAETLNAVSNEGTAVPPPASLDGRP
                     TGLIGTDLLRFSGSATFAVLKSNGDLVAKAQIDFSALGPTATVDDAVAAINAGLGGAA
                     TASFVNGTLSIAATATGQGIAVAQNPTTPSDRAGVGFSQYFGLNDLVRSADSALVPSG
                     LTAADGHGFTTGQTADIELRDASGRSLARYTLSPTTGQTVGDLVTELNASPLAGYGSF
                     SLDSRGRFQFQPNSGLSGSVLSIPVDSMDRYGTGRSFSSLAGLTGTATGLSTAQVRPE
                     IVGTPALLPLARLDTTAAVGARAVGEGDVRGATAFVEQLAKPADFGKEGSSTIERFAS
                     NVLGRAGLQASAASASLTDATARRDDAVNRRDSFSGVNIDEELSQLVVFQNSYSAAAR
                     VMSTASQMYDTLIGMVG"
     gene            5947..6855
                     /locus_tag="VE567_04240"
     CDS             5947..6855
                     /locus_tag="VE567_04240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010407196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HYZ48083.1"
                     /translation="MTRVATIPMHRTLFDAIQRSQQKLADAQVQLATGKKAQTYADLG
                     TEVVRTLSARTLVARQEAYGTVAKRLGTTLSIQDANISGIESATESLRGQMLEAIGTG
                     QSAGLQEAIETAFQQFRSALNADEGGVPLFAGSQTDQLPFKPQTLADAAGLPTADAFA
                     NDGVRASARVADGLNVQFGVGASDLGSKIFDSFRTLAEAGTIGDVPTPAQMAALSTAV
                     QQMANGLVDVRSINADNGRKQAQVETLATRADDRSVLLQDVISKNEDADLVQLASDLT
                     QRRTALEASYSVFSQLSGLSLVNYLR"
     gene            complement(6875..>8476)
                     /locus_tag="VE567_04245"
     CDS             complement(6875..>8476)
                     /locus_tag="VE567_04245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48084.1"
                     /translation="DKREVLANLAHAQPATRQQARWGYARFLIAHGRHAEALGVLDVM
                     LSDDPDLALVNNFQLARGVVLAALNRPAEALGALASDVLAGNPEACFWRAQMFARTKA
                     YDEALEQVGCAQMALRRRPPAARTSFLVTLAEVALAKQRPDVALRWLAMAPDSDPAAN
                     IPRGSAYAALGQLAEARIRLGRAQRGGNLPQRYDAQVRLIEIGISQHTVPVGPAEREL
                     DRIRFVWRGGPIEERALRVSYALANQTKDPRRALSAAAALIRYFDLGPDLPPLMARVQ
                     AQLAALLAPDNTMPLDQAAGIYWDYRDLLPAGGEGDALVVRLADRVQAAGLYGRAAEL
                     LEYQLRHRARDVAQGPLSVRVATLHILAGRPDRAIAAIRDTERTIFPQNMLWDRARIQ
                     AVALDQLGKPEEALAVLQDVPATNGLRAELLWKRRKWDRLVTETAADLPGSGRLSEVQ
                     QAIILRYAVALDMLGRSDEVNRLRARYNGGFAGLATAPVFDILTSGAQGLDSESLARA
                     MSAIPAASPAGAFADLLEMAPPYKG"
BASE COUNT         1447 a         2900 c         2691 g         1438 t
ORIGIN      
        1 ggcattgccg tcgccatcat ggccgagcgc ggcgcgccac aggctttgcg ccagctccga
       61 ctgcgcctgc cggtagatca cctccccgcg ttgcgccggt gtcagggatg caaattgagc
      121 cctatcgatc acggcgatcg cttggcggat gctgtacgga tcaggcgcgc tcgcgcaacg
      181 aaatcggccg ccgaccgatc atcggtcgcc gcctgctcgg cactttcgat cttgtgcaag
      241 gcctcgtcgc gatagcgctg ggcagcgcct tcgatcgcgt ttagcgaacc ataggcctcc
      301 cgggcttgcg aacggagccg cgcgacccga ccgttgatcg cctggcgctc ttcttccaat
      361 cggcgccgct cggcttgcat ccgcgcaaaa taggcagtga cggggatgtt cagcgcgccg
      421 gcggcaacgc cccgctcgcg atcgagatcg gcatcgactt cggcattgcg gcactcgacc
      481 tgggtcagcc ggcttacctc gatgccgatc gaaatgcgga tctcgtcaac ttcccgccga
      541 cgcaagccga tggccgcaca ataaggcgtt ctcaacctgc tcattcttgg tcctgactgt
      601 cggctgcaag gatggcggcg agtgcagcga agctctcggc gcggctgccc cgatccgcct
      661 tgccctggct cagcagcgcc tcgatctgcg gtgccagcgc aatcgcgcgg tccacctccg
      721 ggttcgatcc cgatttgtag gcgccgagcc gaaccatttc ctccatgtcg gcataaagtg
      781 acagctcagc ccgagcagcg agacggagct cgttctcctc ctggcgatgc gcgcgcggca
      841 gggtgcgcga gaccgatttc agcaggtcga tggcaggata gcggccgcgc tcggcgatcc
      901 ggcggctcat cacgacgtgg ccatccagaa tgccgcgcac agcgtccgca accggttcgt
      961 tatggtcgtc gccgtccacg agcacggtga acaggccggt aatgctgccc tgcccggcca
     1021 ggccgggccc cgcgcgttcc agcaagcgag gcagttcggc aaagactgtc ggcgtatagc
     1081 ccttggtcgc gggcggttcg cccgaggcga ggccgatctc gcgctgcgcc atcgcgaagc
     1141 gcgtcaccga atccatcagg cagagcacgc taaggccctg atcgcggaaa tgctcggcga
     1201 cggtgagcgt ggtccaggcc gcctggcggc gcatcagcgc gggctcgtcc gaggtcgcga
     1261 ccacgatcac ggagcgcgcc agcccctcct ccccgaggtc gtcttcgacg aattcctgca
     1321 cctcgcggcc gcgctccccg atgagcccga tcaccgcgac gtcacagcct gtccagcgag
     1381 ccagcatcga gagcaggacg gactttccga cgcccgatcc tgcaaacagg ccgagccgtt
     1441 ggccgcggca aagcggcgcg aagatgtcca gtgcgcggac gcccgtgtcg agcttctccc
     1501 caacccggcc ccgcgcagcg gcggcggcgg caacgctttg atcggccgcg cgacagggcc
     1561 gcgggcgagc ggtcccttgc cgtcggccgg ccggcccagc ccgtctatca tgcggccaag
     1621 ccaactttcg gtcgggcgca gcgcaaaacg atccgcgaca agatcggcgc gcgcgcccga
     1681 agcgacgccc tgcggatcgc tgaacggcag gcaatgggcg acgtcatgat cgaggccggt
     1741 cacttcggcc tccaccgcgc ccgcctcggt catgacctcg atccgcgacc cgatctgggt
     1801 tgcgccagcg aggcccgcga cctcgatcag ggcgccgcgc acggcgacca ctttgccaaa
     1861 tcgccggtcc ggaccgagat cacgaagggc gcgcgcggcg gatgcaagac cagacatcgc
     1921 ccggtcaggc ggcggcgtcg agctgatcga gggcttcggc ttccaggcgc atcaactgcc
     1981 ggcagtcggc caaagccttg tagaattgca ggtgcgcagc cttgcttgca aatgccaccg
     2041 ttgcagccag agcttcctgg tccggaagga gcgccgcgac cttgcggagg gactcgacga
     2101 tgcggtcctg gtgctcctcg cgattttcct catccatata ggccatgatg gtgtgaaaat
     2161 agagctggcg cgccggagtg gttgcttcct cgggcgtcat cacctcgcgg ccgcgcagga
     2221 tcgtggcctt gttctcgacc agcagggtcg tccggcccac ggccgagagg acggccccgt
     2281 tcaccaccac tttttcgccg tcgcgaagcg taatccgaag cattcgaccg tcctcttgat
     2341 ctgcctgctt caactatagg aaaatcttcg cgacaccggg tccgcacggc aattctcctg
     2401 atttcgcgga gggctccctt ctcttcctat aatgtgtgca agcgcgccgc gctcgcaggc
     2461 cggtgtgcgt ccaagggaga ctgtaatgag cctctattct gcactttatg ctggcgtatc
     2521 cggcctcggc gccgagtcca cggccatggc aaccgttgcc gacaacatca cgaacatcaa
     2581 taccatcggc tataaaggtg tgtcggccga gttccgcacg ctggtgacgg acgggcgcct
     2641 tcggagcaca tattcggctg gcggtgtggc cgcagctccc caggcgatga tctcgaagca
     2701 gggcctgctt caggcctcgg ccggcgacac cgatctcggc atcgacggcg ccggcttctt
     2761 cgtgacgcgg aacggaacgg gctccaacgc ggaagtcgcg ttcacgcgcg ctggcgcgtt
     2821 caagcccgac ctccaaggtt tcctccgcaa caccagcggt tattacctgc agggctggcg
     2881 cctcgattcc cagggcaatt atgtggatac cggcagcctg aacgcactgg agccggtacg
     2941 cgtcagcgaa ttgaccgggt cggctgcggc caccagtcgc attcagatgc gcgccaacct
     3001 gcgcgccgac gaagtgactt acaccggcgc ctatacggcc ggcgacatgg cctcgggaac
     3061 cgttgcgcca cagttcacgc ggtcgatgga catttatgat gcccagggca gcacccaccg
     3121 gatcactctc gcctatctga agaccggcgc gaaccagtgg gcaagcgaga tctatgccgt
     3181 gccagccacc gacgtaactg cggccggcgg cctgcttgca agcggcaaca tcgctttcaa
     3241 ctcggacggg agcctcgacc gtgccggttc caccccagcg ctcttcaacc cgctcaacat
     3301 cacctggacg aacggcgcgg cagccgagcc gatcgatctg gcgttcggga ccgatggcgg
     3361 gcttgacggg ctgactcaat tctccggcga atccgccctc atttcctctg ccgttaatgg
     3421 cggcctgttg gggacgatcg cctcggtcga agtttcggaa caaggcgtgg tgagcgcggt
     3481 attttccgac ggtacggcgc gggcggtctt tcaacttcca atcgcgacat ttcagaaccc
     3541 cgacggtctc actcgcgtcg cgggcaatgc atacatgacg tcgagcgcgt cagggaacgt
     3601 tgcgatcaat cggccgggta tactcggctc cggcatgatt tcgccaggaa cgctggaggc
     3661 ctcgaccgtc gatctcgcgc aggagttcac caacatgatc cgcttccagc gcgcctacag
     3721 cgcctcatcg aaggtcatca cgacggtgga cgacatgttg caggaactca acaacctgaa
     3781 gcgctgatcg ccgcttcgcc tgacctaccg ttgcttcgcc aggaaaccgc tacatgtccc
     3841 tgaacgacat tctaggttcc gccctcgccg gcctcggcgc ctcccaggcc ggcatgcgca
     3901 cggtgtccaa caacgtcgcg aacgtgaaca cgcccggcta tgcccgggag cgggtgtcgc
     3961 tgtccacggg ggtcacggcg ggccgagtaa acggagtttc ggtcggcgaa cccgaacgga
     4021 ttgccgaccg cttcctggag gcaaccgtct atcgccgttc gggtgagttc gggagggcgg
     4081 acgtgaccgc gaactacctg aaccggctcc aatcgctgct tggagaaccg ggctcccaat
     4141 ccagcgtggc cgcgcggctc gacgccgtct cggccgccgc ggtggcgatg accgggtcgc
     4201 ccggctccga gcagacgatc gccgcgttca cccagcaggt cggcgatgcc atctcgtcga
     4261 tgcagcagct caacaccgat gtgggaacgc tgcgggcgga ggtggaatcc gaggtcggct
     4321 acacagtcga tcgcattaac ggcctccttc agcaggttca ccaactcaac gatacgatcg
     4381 cgcgacaagg cgggctcggc cgcagcatct ccggcgccgc cgaccagcgc atgtcggcgc
     4441 tggaggagct gagcagcctc gtgaacgtca cggtgcgcga gcagccagac ggccgcgtca
     4501 ccatcgattc cgcgtccggg gccgtcctac tcgaccggcg cctgcgccag ctatcctatc
     4561 cgatagccgg cgacggcgtc tcccagccca cttatccccc gatcgacatc cgctttgcag
     4621 acgatagcgg caatatgggt gccgcgaccg gggacaagct cgactcagca agcgtcggcg
     4681 gcaagctggg tgggcttatc gacttgcgcg atcgcgccct tcctgcgttt gccgacaagg
     4741 tcggtatcat cttcggtggc gtggccgaga cgctcaacgc cgtttccaac gaagggacgg
     4801 cggtgccgcc gcccgccagc cttgacggta ggccaacagg gctcatcggc actgaccttc
     4861 tgcgtttcag cggctctgcc accttcgcag tgctcaagtc gaacggcgac cttgtggcca
     4921 aggcgcagat cgacttcagc gcactggggc cgaccgcaac cgttgacgac gccgtggccg
     4981 cgatcaatgc cggccttggc ggcgccgcaa ccgcttcatt cgtcaacggc acgctcagca
     5041 tcgcggcgac cgccaccggc cagggcattg ccgtcgccca aaacccgact actccgagcg
     5101 atcgtgcggg ggtcggcttc tcgcaatatt tcggcctcaa cgacctcgtg cgcagcgccg
     5161 atagcgcgct cgtgccgtcg gggcttaccg ccgccgacgg ccatggtttc accacgggtc
     5221 agactgccga catagagctt cgcgatgcga gtgggcggtc tctggcgcgc tacacgcttt
     5281 cgcccacgac cggccagacg gtgggggacc tggtcaccga gctcaacgcc agcccgctcg
     5341 ccggctatgg gagcttctcg ctcgacagtc gcgggcgctt tcagttccag cccaatagcg
     5401 ggctaagcgg cagcgtcctc agcattccgg tagactcgat ggatcgctat ggaaccgggc
     5461 gctccttttc atccctcgct ggcctgaccg gcaccgccac tggcctttcc accgcgcagg
     5521 tgcggccaga gatcgtcggc acgccggcac tgctgcccct ggcccggctg gataccacag
     5581 ccgcggtggg ggcgcgggct gtcggcgaag gcgacgtccg cggggcgacc gcatttgtcg
     5641 agcagctcgc caagccggcc gatttcggca aggaggggtc gtcgacgatc gaacgcttcg
     5701 cgagcaacgt cctgggccgg gccgggcttc aggcatcggc agccagcgcc tcccttaccg
     5761 acgcgaccgc ccggcgcgac gacgcagtga accggcgcga ctccttttcc ggtgtgaaca
     5821 tcgacgagga gctctcgcag ctcgtggttt tccagaacag ctattccgcc gctgctcgcg
     5881 tgatgtcgac cgcgtcgcaa atgtacgaca cgctcatcgg gatggtgggc tgaaaggaag
     5941 catgagatga ccagggtcgc cacaattccg atgcaccgca cgctgttcga tgccattcag
     6001 cgctcacagc aaaagcttgc ggacgcgcag gttcagctgg cgacgggcaa aaaggcccag
     6061 acctacgccg accttggcac ggaagtcgtt cgtacgctgt cggctcgaac cctggtcgcg
     6121 cgtcaggagg cctatgggac cgtcgccaag cggctcggta ccaccctttc cattcaggac
     6181 gccaatatct cgggcatcga gtccgccacc gagtccctgc gcggtcaaat gctggaggcg
     6241 atcggcactg gccagtccgc cggccttcag gaggcgatcg aaaccgcctt ccagcagttt
     6301 cgctcggcac tcaatgcgga cgaaggcggg gtgccgcttt tcgccggctc acagacggat
     6361 cagctcccgt tcaagcctca gacgctcgcc gacgcggcag ggctgccgac tgccgatgcg
     6421 ttcgcgaacg atggcgtgcg cgcctctgcc cgcgtggcgg atggcctcaa tgtccaattc
     6481 ggggtggggg caagcgacct tgggtcgaag attttcgaca gcttccgcac gctcgccgaa
     6541 gccgggacga tcggcgacgt gccgactccg gcgcagatgg ccgcgctctc aaccgcggtt
     6601 cagcagatgg cgaacggcct tgtcgacgtg cgttccatca acgccgacaa tggacgcaaa
     6661 caggcccagg tcgaaacgct cgccactcgt gcggacgacc gctccgtgct gctgcaggac
     6721 gtgatctcga agaatgagga tgcagacctc gtccagctcg cttccgatct gactcagcgc
     6781 cgcaccgcgc tcgaggcgtc ctattcggtt ttttcgcaac tctcggggct gagcctggtc
     6841 aactatctcc gctaagtccg cacctggatc ggccctagcc tttatagggc ggggccattt
     6901 cgagcagatc ggcgaacgcg ccggccgggc tggcggcggg gatggcggac attgcgcgcg
     6961 ccaggctttc cgaatccaaa ccctgggcgc cgctcgtcag aatatcgaac accggggcgg
     7021 tcgccaggcc ggcaaatccc ccattgtatc gggcccgaag acgattcact tcgtcgctcc
     7081 gacccaacat gtcgagcgcg actgcatagc gcaggatgat tgcttgctgc acttcgctca
     7141 gccggccgga ccccggcaga tcagccgcgg tttcggtcac aagccggtcc catttgcggc
     7201 gcttccacaa gagctcggcg cgaaggccgt ttgttgccgg cacgtcctgc aggaccgcga
     7261 gcgcttcctc gggcttaccg agctggtcca gcgcaacggc ctgaatgcgg gcgcggtccc
     7321 aaagcatatt ctgcgggaag atcgtgcgtt ccgtatctcg gatcgcagca atggcccggt
     7381 cgggccgccc ggcaaggata tggagcgtgg ccacgcgcac cgagagcggt ccctgcgcga
     7441 cgtcgcgggc gcggtggcgg agctgatatt ccagtagctc cgcggcgcgg ccgtacaggc
     7501 ccgcggcctg cacccgatcg gcgagccgca cgaccaatgc atccccttcc ccgccggccg
     7561 gcagcagatc gcgataatcc caataaatgc ctgccgcctg gtcgagcggc atggtgttgt
     7621 cgggagcgag caaggcggcg agttgcgcct ggacccgcgc catcagcggc ggcagatccg
     7681 gcccgaggtc gaagtagcgg atcagagccg cagccgccga aagcgcgcgg cgcgggtcct
     7741 tggtttggtt ggccaaggcg tagctcactc gcagcgcccg ttcctcgatc ggccccccac
     7801 gccagacgaa ccggatgcgg tccagttcgc gctccgcggg gccgacgggt accgtgtgtt
     7861 gactaattcc gatctcgatc agacggactt gcgcatcata acgctggggc aaattgcccc
     7921 cgcgctgcgc ccggccgagc cgaattcgcg cctctgcaag ctgcccaagc gccgcatagg
     7981 cgcttccccg cgggatattt gcggcggggt cgctatcggg cgccatggct agccagcgca
     8041 gcgctacgtc cgggcgttgc ttggcaaggg ctacttcagc caatgtaacc agaaatgaag
     8101 tgcgtgcggc gggcgggcgc cgcctgagcg ccatctgtgc gcagccgact tgctccaggg
     8161 cctcatcata ggccttggtt cgcgcgaaca tctgcgctcg ccagaaacat gcctcggggt
     8221 tgccggccag cacgtcgctc gccagcgctc ccagcgcctc cgccggacgg ttcagcgcgg
     8281 ccagcacgac ccctcgcgcg agttggaagt tgttgaccag cgcgagatcg ggatcatcgc
     8341 tcagcatcac gtcgagcacg ccaagcgcct cggcatgacg accatgcgcg atcaagaacc
     8401 gggcatagcc ccatcgggcc tgctgccgcg tcgctggttg agcgtgcgcc aggttcgcca
     8461 gcacttcgcg cttgtc
//
LOCUS       DASQVK010000197         2792 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_202729,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000197 DASQVK010000000
VERSION     DASQVK010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202729"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(5..1369)
                     /locus_tag="VE567_04250"
     CDS             complement(5..1369)
                     /locus_tag="VE567_04250"
                     /EC_number="3.5.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017499177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formimidoylglutamate deiminase"
                     /protein_id="HYZ48085.1"
                     /translation="MGSPTTQLWFETALLPGGWADQVRVQVNAGRIAEVVTGSPPQAG
                     DERHAIGIPGLCNVHSHGFQRGMAGLTERRGRPHDDFWSWREVMYRFLDRLDPDDIAA
                     ITAQACVEMLETGYTRLGEFHYLHNAPDGQPYVHRAETAAAVVEAARMAGIGLTLLPV
                     FYAHGDFGGAPPTPGQRRFLSDLDGFARLLDESEELLGKDEAIGVAPHSLRAVTPEEL
                     RELIALRPGAPVHIHAAEQVKEVEASVAALGARPVEWLLEHAGVDSRWCLVHATHLTE
                     AEADALAASGAVAGLCPVTEANLGDGIFPAIRYLAAGGRIATGTDSNVQIDPAAELRA
                     LEYSQRLAHRARGCLATEQAPSVGGRLFRAAGEGGAQALGTTFGLAVGNGADIVSLNA
                     EHPSLIGRSGDALLDGWIFGANRPAVDCVWRAGLNVVRGGVHLARGDVARRYRETLGK
                     LLAA"
     gene            1415..>2792
                     /gene="hutH"
                     /locus_tag="VE567_04255"
     CDS             1415..>2792
                     /gene="hutH"
                     /locus_tag="VE567_04255"
                     /EC_number="4.3.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004212473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004397 - histidine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ammonia-lyase"
                     /protein_id="HYZ48086.1"
                     /translation="MLTPGSVSLAEWRDTYRGGLVALDPACMARVEASAAAVERIVAK
                     GAPVYGVNTGFGKLASVGIAVCDLATLQRNIVLSHAAGVGEPMPVPVARLMMALKLAS
                     LAQGASGVRRDTVALLAAMLDRGLIPVVPAQGSVGASGDLAPLAHMAAAMIGVGEIWV
                     EGTRRPATEALDAAGLKPLELGPKEGLALLNGTQFSTACALAGLFEAERLLQAALVTG
                     ALSTEAARGSDTPFDHRIHALRRQRGQIEVADALRELMQGSAIRESHRDNDARVQDPY
                     CLRCQPQVMGAVLDLLRQAGATLADEANGVSDNPLIFPDTDEALSGGNFHAEPVAFAA
                     DMIALALCEIGSIAERRIAMLTDPALSGLPAFLTAHPGLNSGFMIPQVTAAALVSENK
                     QRACPASVDSIPTSANQEDHVSMAAHGARRLAPMAENLAHVLGIELLTAAQGCDFHAP
                     LVSSAPLER"
BASE COUNT          423 a         1087 c          856 g          426 t
ORIGIN      
        1 atcgtcatgc cgcgagcagt ttgccgagcg tctcgcggta gcggcgggcg acatctccgc
       61 gcgcaagatg cacgccgccc cgcaccacat tcagccccgc gcgccacacg cagtccacgg
      121 ccggacgatt ggcgccgaaa atccagccgt cgagcagcgc atcgccgctg cgcccgatca
      181 gcgacggatg ctccgcgttc agggacacga tgtcggcgcc gttcccgacc gcaaggccga
      241 aagtcgtgcc gagcgcctgc gccccgccct cgcccgccgc ccggaacagc cggccgccga
      301 ccgacggcgc ttgctccgtc gccaggcagc ctcgcgcccg atgtgcgagc cgctggctat
      361 attcgagtgc gcgcagctcc gccgccgggt cgatctgcac gttggaatcg gttccggtcg
      421 cgatccgccc gccggccgcc agatagcgga ttgccggaaa aatcccgtcg cccagattgg
      481 cctccgtcac cgggcacagc cctgccactg ccccgctcgc cgccagcgca tccgcttcgg
      541 cctcggtcaa gtgcgtcgca tgcaccaggc accagcgcga atccacgcct gcatgctcaa
      601 gcagccactc gaccggccgc gcccccagcg ccgcgacgct cgcctcgact tccttcacct
      661 gttcggcggc gtggatatgg accggcgctc ccggccgcag cgcaatcaac tcccgcaatt
      721 cctcgggcgt gaccgcgcgc agcgaatgcg gcgccacccc gatcgcttcg tctttgccaa
      781 gcagttcttc gctctcgtcg agcagccgcg cgaacccgtc caggtcggag agaaaccgcc
      841 gctgcccagg cgttggaggg gccccgccga aatcgccatg cgcgtagaag accggcagca
      901 gcgtcagccc gatgcccgcc atccgcgccg cttccacgac cgctgccgca gtctccgccc
      961 gatgaacata gggctgcccg tccggcgcat tgtggaggta atgaaactcg ccgagccggg
     1021 tatagccggt ctccagcatc tcgacgcacg cttgcgcggt gatcgccgcg atatcgtcgg
     1081 ggtcgagccg gtcgaggaag cggtacatga cttcccgcca gctccagaaa tcgtcatgcg
     1141 gccgcccccg ccgctcggtc agcccggcca tgccgcgctg gaagccatgg ctatggacgt
     1201 tgcacaggcc gggaatgccg atcgcgtggc gctcgtcccc ggcttgcggc gggctaccgg
     1261 tcacaacctc ggcgatgcgc ccggcattca cttgcacccg cacctgatcg gcccagccgc
     1321 ccggcagcaa ggccgtctcg aaccagagct gcgtcgtcgg actgcccata tattatgact
     1381 agacatatta ccctcgcgcg gcaagactga cgccatgctg acccccggtt cggtttcgct
     1441 tgctgagtgg cgcgacacgt atcgcggcgg cctggtcgcg ctcgatccgg cttgcatggc
     1501 ccgggtcgaa gccagcgcgg cagcggtcga gcgcatcgtc gccaagggcg cgcccgtcta
     1561 tggcgtgaac accggctttg gaaagctcgc cagcgtcggc atcgccgttt gcgacctcgc
     1621 cacgcttcag cgcaacatcg tgctcagcca cgccgcgggc gtgggcgagc cgatgccggt
     1681 ccccgtcgcg cggctgatga tggcgctgaa gctcgccagc cttgcccagg gcgcttcggg
     1741 cgtgcggcgc gatacggtcg cgctgctcgc ggcgatgctg gaccgcggcc tgatccccgt
     1801 cgtccccgcc caaggctcgg tcggcgccag cggcgacctc gctcccctcg cccatatggc
     1861 cgccgcgatg atcggcgtcg gcgaaatctg ggtcgaaggc acgcgccgtc ccgccacgga
     1921 ggcactcgac gccgccggac tgaaaccgct ggaactcggc cccaaggaag gcctcgccct
     1981 cctcaacggc acgcagttct cgaccgcctg cgcccttgcc ggcctgttcg aggcggagcg
     2041 gctgcttcag gccgcgctcg tcaccggcgc gctgtccaca gaggcggcgc gcggctccga
     2101 cacccctttc gaccaccgca tccacgccct tcgccgtcaa cgcggccaga tcgaagtcgc
     2161 cgatgccttg cgcgaactga tgcaaggctc ggccatccgc gaatcccacc gcgacaacga
     2221 cgcgcgggtg caggaccctt attgcctgcg ctgccagccc caggtgatgg gcgccgtgct
     2281 cgatctgctc cgccaggccg gcgccacact ggccgacgaa gccaatggcg tctccgacaa
     2341 tccgctgatc ttccccgata cggacgaagc cctgtccggc ggtaatttcc acgccgagcc
     2401 cgtcgctttc gccgccgata tgatcgcgct cgcgctgtgc gagatcggct cgatcgccga
     2461 gcgccggatc gcgatgctca ccgacccggc tttatccggc ctccccgcat tccttaccgc
     2521 gcatcccggc ctcaactccg gcttcatgat cccgcaagtc accgccgccg cactcgtctc
     2581 cgagaacaag cagcgtgcct gcccggccag tgtcgactcg atccccacct cggccaatca
     2641 ggaggatcat gtctcgatgg ccgcccacgg cgcccgccgc ctggcgccaa tggccgagaa
     2701 tctcgcgcac gtgctcggca tcgagctgct gaccgccgcg caaggctgcg acttccacgc
     2761 cccgctcgtc tccagcgccc cgctcgagcg cg
//
LOCUS       DASQVK010000198         2123 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_297693,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000198 DASQVK010000000
VERSION     DASQVK010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297693"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..398)
                     /locus_tag="VE567_04260"
     CDS             complement(<1..398)
                     /locus_tag="VE567_04260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYZ48087.1"
                     /translation="MASFPSALFLREAEVRRGLELMFAGQAALARVIEPILADAELGR
                     AHQRALYFIGRHPDLTVGALLSYLGITKQSLNRVLNELAERGFVEVRTGRDDRRQRLL
                     RLSDSGRALEARLFEAMRARLAAAYAEAGQ"
     gene            449..1534
                     /locus_tag="VE567_04265"
     CDS             449..1534
                     /locus_tag="VE567_04265"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016744788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HYZ48088.1"
                     /translation="MSLTFDFQPNAVPLATIEREALLADPGFGKVFTDHMAVVQYSDG
                     KGWHSARIQAREPITADPASAVLHYAQEIFEGLKAYRHPDGSIALFRPEANARRLQES
                     AKRMAMPPLPEDIFLESVLALVRTDKDWVPSIPEGALYLRPFVFASEVFLGVKPSSEY
                     IYAVIASSVGSYWKGGVRAISLWASQTYTRAAPGGTGAAKCGGNYAASLIALAEASRQ
                     GCDQVVFLDAAEHRWVEELGGMNIFFVFDDGRLRTPPLGGTILPGITRDSLIQLARDQ
                     GLTVEEAPYSIEEWRDDAASGRLVEAFACGTAAVVTPIGSVKGAGFEVTIGSGGPGQL
                     TERLRQQLTDIQFGRAPDPHGWVRLVA"
     gene            1593..1940
                     /locus_tag="VE567_04270"
     CDS             1593..1940
                     /locus_tag="VE567_04270"
                     /inference="COORDINATES: protein motif:HMM:NF037100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HYZ48089.1"
                     /translation="MPAQTAPDPEAMRVARLFLARIAGAYPIVEAWLYGSRARGDARP
                     DSDVDVAVVIEGPRREVRRLSGDLAAEAFDELLDTGLLVSPLAISAEDWRAPDGFSNP
                     FLLHNIKREGIPI"
     gene            1937..>2123
                     /locus_tag="VE567_04275"
     CDS             1937..>2123
                     /locus_tag="VE567_04275"
                     /inference="COORDINATES: protein motif:HMM:NF017020.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEPN domain-containing protein"
                     /protein_id="HYZ48090.1"
                     /translation="MKPELWIAQAERSLETAQLVLGTDPNAACSRAYYAMFYAARAAL
                     LRAGHAEQAMGKTHSGLI"
BASE COUNT          366 a          679 c          705 g          373 t
ORIGIN      
        1 tgctgccccg cctcggcata agcggcggcg agccgggcgc gcattgcctc gaacagccgg
       61 gcttccagcg cccgcccgct gtcggacagc cgaagcagtc gctgcctgcg gtcgtcccgg
      121 ccggtgcgga cttcaacgaa accgcgctcc gccagctcat tcagcacgcg attcagagat
      181 tgttttgtga tgcccagata gctgagcaac gcgccgacag tcaggtcggg atgccggccg
      241 atgaagtaga gcgcgcgctg atgggcgcgg ccgagctctg cgtccgcgag gatcggctcg
      301 atgacccggg caagcgcggc ttgcccggcg aacatcaact cgagcccccg ccggacttcg
      361 gcctcgcgca ggaacagggc tgaaggaaag gatgccattg ccttcgccat gccattcgcc
      421 ctagtcggcg gcaagcaaga gggacctgat gagcctgacc ttcgatttcc agcccaatgc
      481 cgtgccgctc gccacgatcg agcgggaggc gctgctcgcc gatcccggct tcggcaaagt
      541 attcaccgac catatggcgg tcgtgcagta tagcgacggc aagggctggc acagcgcccg
      601 aatccaggcg cgcgagccga ttacggccga tcccgcgtcc gcggtcttgc attacgcgca
      661 ggagattttc gaagggctga aggcttatcg ccaccctgac ggcagcatcg ccctgttccg
      721 tcctgaggcg aatgcgcggc gtctgcagga atcggccaag cgcatggcga tgccgccgct
      781 gcctgaagac attttcctgg agtctgtcct tgcgctggta cggacggaca aggattgggt
      841 gccgagcatt cccgaagggg cgctttactt gcgcccgttc gtgttcgcga gcgaagtatt
      901 tctgggggtt aaaccttcct ccgaatacat atacgccgtg atcgcgtctt cggtcggttc
      961 ctattggaaa ggcggcgtgc gggcgatctc gctctgggcg tcgcaaacct atacgcgcgc
     1021 ggcgcccggc gggaccggcg cagccaaatg cggcggcaat tatgccgcca gcctgattgc
     1081 tttggccgag gcgagccgcc agggctgtga ccaggtcgtg ttcctagacg cagccgagca
     1141 ccgctgggtc gaggaattgg gcggcatgaa catcttcttt gtgttcgacg acgggcggct
     1201 gcgcaccccg ccgctcggcg gcacgatcct gcccggcatc acgcgggatt cgctgatcca
     1261 gctcgcacgc gaccagggcc tgacggtcga ggaagcgccg tacagcatcg aagagtggcg
     1321 cgacgatgcg gcgagcgggc ggctggtcga ggcctttgcc tgcggcaccg cggccgtggt
     1381 gacgcccatc ggcagcgtca aaggggcggg cttcgaggtc actatcggca gcggcggccc
     1441 cggccagctc accgagcggc tccgccagca gctcaccgac atccagttcg gccgcgctcc
     1501 cgatcctcac ggctgggtcc gcctcgtggc gtaagagggg cgattcccgt cgcggtttga
     1561 gtccgccgcc tcaaacctgc tacgaccgct tcgtgccggc gcaaaccgct cctgacccag
     1621 aagcaatgcg cgttgccagg ctcttcctgg cgcgaattgc aggcgcttat cccattgtcg
     1681 aggcatggct ctacggctca cgcgcgcggg gcgatgcgcg gccggacagc gacgtggatg
     1741 tggcggtcgt gattgaaggg ccaagaaggg aagtgagaag actgagcggt gatctcgccg
     1801 ccgaagcctt cgacgagctc ttggacaccg gtctgctcgt gtcgccattg gcaatatccg
     1861 ctgaggactg gcgggcgccg gacggtttct ccaatccatt cctcctgcac aacatcaagc
     1921 gagaaggcat tccgatttga agccggagtt atggattgct caggcagaac gcagcctgga
     1981 aaccgcgcag ctggtcctcg gaacggaccc gaacgcggca tgcagccggg cctattatgc
     2041 catgttctat gcggcgcgcg ctgctttgtt gcgggccggt catgccgaac aggccatggg
     2101 caagacgcat tccggattga tcg
//
LOCUS       DASQVK010000199         2152 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_108155,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000199 DASQVK010000000
VERSION     DASQVK010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2152
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108155"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            69..551
                     /locus_tag="VE567_04280"
     CDS             69..551
                     /locus_tag="VE567_04280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48091.1"
                     /translation="MDAAAISEAEAALAEAEAALAEAEAAEMAGVTDTAAADAQDEAV
                     LDMVAMEMGATDEVDIDDTAAMIVKAADAEPQAPAEPEMVAVAPDPVARTPVPPIELS
                     PHQSFVAPPEPARQTAMEVSLGSTIIASGIVQKPRAAASDPLAPIRRMSQAEKVAFFS
                     "
     gene            701..>2152
                     /locus_tag="VE567_04285"
     CDS             701..>2152
                     /locus_tag="VE567_04285"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008234 - cysteine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HYZ48092.1"
                     /translation="MPRFKSLLLCAGLLGGLLGFASGAFAQSSTPDSTQPGGAEPRVA
                     LVIGNAHYRNAPQLANPDHDAQSMAQLLNSAGFEVISATDLTQDDMVKLVQDFSARVA
                     ARGPNTVAMVYYAGHGVQLAGENYLIPVDARISTPSDLTSNSMRLVDVMATLEAIPSR
                     MRIVVLDACRNNPFPNVNDAGRGLAIVDAPNGSIVGYSTAPGAEALDGSGGHSPYTQA
                     FLRLARRPNLPIEQLFKRVRLEVNNVTDGQQIPWESSSLTSEFYFFGDTQLASTRAPS
                     KAPVVQMASNLPSRSVRQAYDYVLSEGSVEYYQEFITLFPHDPLCDHIRRLLANSLLA
                     QAWHKAVVANSPFAYKAFYDNYTNSPYARVALKLQSQPKIVPLLQPTRLIVPEQLAPK
                     LKLSNLDQPKVGDIKVGDVKDGGIKLADIGGQSHGNPGAAIGDKLNGNPGIKTSDVFH
                     LPPDMMPKQPTDSGPSKIVTLPATGTKDTNGGNA"
BASE COUNT          394 a          742 c          667 g          349 t
ORIGIN      
        1 ccgcaggtgc ggagagggtt gcgtcagcgc ccccgcagca agcccctgaa gctgcaaccc
       61 gcatcgcaat ggacgcagcc gcaatttcgg aggccgaggc cgcgctggcg gaagctgagg
      121 ccgctctcgc cgaagctgaa gccgccgaga tggccggcgt caccgatacg gccgccgccg
      181 acgcgcagga cgaagccgtg ctcgacatgg tcgcgatgga gatgggcgcg accgacgaag
      241 tcgacatcga cgacaccgcg gcgatgatcg tcaaggcggc agatgcggag ccgcaggcgc
      301 cggccgagcc cgagatggtc gcggtcgcgc ctgacccggt cgcgcggacg ccggtcccgc
      361 cgatcgagct ctcgccgcac caaagcttcg tcgcgccgcc ggagccggcg cgccagactg
      421 cgatggaggt ctcgctcggc tccacgatca tcgccagcgg tatcgtacag aagccgcgcg
      481 ccgccgccag cgatccgctg gctccgatcc gccgcatgag ccaggccgag aaggtcgcat
      541 tcttctcgta gcgtcgcgtg tccgcgaacg acgcgtggcc cgagtgattt gaatcacact
      601 cgctttcctg cgtgactttt ctcacgcacc gcgacctgaa ccctgcctta gcgtatccac
      661 gaccaatttc gcgatcgaga ttcctttcag ggaggacgct atgccccgtt tcaaatcatt
      721 gctcttgtgc gccggcctcc tgggaggcct gctcggcttc gcaagcggcg cttttgctca
      781 gtcctcaact cccgacagta cgcaacccgg cggcgccgag ccgcgggtcg cgcttgtcat
      841 cggcaacgcg cattaccgga acgcgccgca gctcgccaac cccgaccacg acgcgcaatc
      901 gatggcgcaa ttgctcaatt cggcaggctt cgaggtgatc tccgccaccg acctgacgca
      961 ggatgacatg gtcaaactgg tgcaggactt ttcggccagg gtcgcggcgc gcggaccgaa
     1021 cacggtcgcg atggtctatt acgccggcca cggcgtgcag ctcgccggcg agaactatct
     1081 gatcccggtc gacgccagga tttccacccc ctccgatctc accagcaact cgatgcggct
     1141 ggtcgacgtg atggcgacgc tggaggcgat cccgagccgg atgcgcatcg tcgtgctgga
     1201 cgcctgccgc aacaacccgt tcccgaacgt caacgatgcc ggccgcggac tggcgatcgt
     1261 cgacgcgccg aacggctcga tcgtcggcta ttcgaccgcg cctggcgccg aagcgctgga
     1321 cggctccggc ggccacagcc cctacacgca ggcgttcctg cgtcttgccc gccggccgaa
     1381 tttgccgatc gagcaattgt tcaagcgcgt tcgcctcgaa gtgaacaatg tcaccgacgg
     1441 ccagcagatt ccctgggaga gctcgtcgct gaccagcgag ttctatttct tcggcgatac
     1501 gcagcttgca tcgacccgcg cgccgtcgaa ggcaccggtg gtgcagatgg cgtcgaacct
     1561 gcccagccgg tcggtgcgcc aggcctatga ctatgtgctg agcgaaggct cggtggaata
     1621 ttatcaggag ttcatcaccc tgttcccgca cgatcccctg tgcgaccaca tccgccggct
     1681 gctcgccaac tctctgctgg cgcaggcgtg gcacaaggcg gtggttgcga attcgccgtt
     1741 cgcctacaag gccttctacg acaattacac gaacagcccc tatgcccggg tcgcgctgaa
     1801 actgcagtcg cagccgaaga tcgtgccgct gctgcagccg accaggctga tcgtgcctga
     1861 acagcttgcc ccgaagctga agctgtccaa tctggaccag cccaaggttg gcgatatcaa
     1921 ggttggcgac gtcaaggatg gcggcatcaa gctcgccgac atcggcggcc agagccatgg
     1981 caacccgggc gccgcgattg gcgacaagct gaacggcaat cccggcatca agaccagcga
     2041 tgtcttccat ctgccgcccg acatgatgcc gaagcagccg acggatagcg gcccgagcaa
     2101 gatcgtcacc ctgcccgcga ctggcacgaa ggacaccaac ggcggcaatg cg
//
LOCUS       DASQVK010000200         4901 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_329445,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000200 DASQVK010000000
VERSION     DASQVK010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4901)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4901)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4901
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329445"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1037)
                     /locus_tag="VE567_04290"
     CDS             complement(<1..1037)
                     /locus_tag="VE567_04290"
                     /inference="COORDINATES: protein motif:HMM:NF021508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2235 domain-containing protein"
                     /protein_id="HYZ48093.1"
                     /translation="MPKDIVVCCDGTGNEIGTNISNVLKLFRVLEKNNEQRVYYHPGV
                     GTIGLESTWRRFKQEARGVFSLATGAGLDQDVLAGYHFLCENYQEGDRVFLFGFSRGA
                     YTVRVLAAFIYVMGLLPRDQLDLAGYAFAAYKRASSESQRSGEGPDDSKLREAWHFRQ
                     IAGGRLIHIEFIGVWDTVASVIVPRQDDLLFDMQMLRFTRTNNSVKKFRQAMSIDERR
                     RMFRLNRWKEPQGYRSDRFDPATETDQDIRQVWFAGVHGDVGGGYPEAESSLSKFPLL
                     WMIEQARAAGLRMDQTMIDHLVWGKPRPSSTHTYVPPDALGQMHVSLKGAWWILEWLP
                     KRAKWKEWPGR"
     gene            complement(1203..2492)
                     /locus_tag="VE567_04295"
     CDS             complement(1203..2492)
                     /locus_tag="VE567_04295"
                     /inference="COORDINATES: protein motif:HMM:NF017569.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYZ48094.1"
                     /translation="MRAVASVGFADRGILRDTFLLTLAKTQDEKRALGDCFDLFFNQP
                     EPAQDTAPEAKIEDPEQSGSNTASESPSDAGGGDENLGPLAEMLLSQDRNALAAAIAN
                     ASGAASLSDIRYFTQRGIFSGRILDAMGIQRLRDDLDHLTAINPALAERLQAALSALR
                     ETVRDTVSQALLLYGREEAENLRNDILRNAPLARIEPRQVEQMRALIRQIARRLRERY
                     SKPRKRQRRGHLDVRRTLRRNAAWGSVPFLTAWKRKHRDKPKIVALCDVSGSVARVSD
                     FFLLLIHSLHEVVDDVRSFAFSGHLIEVSDILEEKSPEAAMAEIMSKVGFGSSDYGNS
                     LADFEKEWMSAITPQTTVIVLGDARSNNLDPRADILRRISERSRRLVWLNPEGRMTWG
                     FGDSEMPRYATFCTIVRQCATAKQLERAVSDIVAAYQ"
     gene            complement(2580..3527)
                     /locus_tag="VE567_04300"
     CDS             complement(2580..3527)
                     /locus_tag="VE567_04300"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HYZ48095.1"
                     /translation="MADIGPQASIEAVESGLAAQGYIASRQIATAVYLAQEIEKPILV
                     EGPAGVGKTELAKAIAAWREQKLIRLQCYEGLDEAKALYEWKYAKQLLYTQILKDKLG
                     EVLGGAATLHAALDQLHDFGDVFFSKEFVEPRPLLQALEQPVGCVLLIDEIDKSDAEF
                     ESLLLEILSDFQVTIPELGTVSAVAPPTVILTSNSERDLGDALKRRCLHLHIGFPEQR
                     LEERIVESRVPGISQTLRKQMVGFIHEIRTLDLKKLPSVSETIDWARVLVLLQAAELD
                     HEIVKDTLNVLLKYEADIEAATPQVSTFIAKASRQNVFG"
     gene            complement(3639..4271)
                     /locus_tag="VE567_04305"
     CDS             complement(3639..4271)
                     /locus_tag="VE567_04305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HYZ48096.1"
                     /translation="MIEAVIWDFGGVLTTSPFEAFTRFETERGLPADIIRRTNAANHL
                     ENAWAKFERAEVDIEAFDQLFAAESLALGAEVRGKDVLPLLRGDLRPEMVEALKRINA
                     KFKTGCITNNLPANAIGSLTGRTLYVAEVMALFDHVIESARIGLRKPDARIYQMMVET
                     LKVNPKNCVYLDDLGVNLKPAREMGMTTIKVVSPAQALADLEAATGLVLR"
     gene            4355..>4901
                     /locus_tag="VE567_04310"
     CDS             4355..>4901
                     /locus_tag="VE567_04310"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like serine protease"
                     /protein_id="HYZ48097.1"
                     /translation="MTRTRAIASSMKRLPLAILSLALLFVPPAHAIVGGGAPTTEGVG
                     RSVVTIVGSRGNFCTGALIAPKIVLTAAHCVQPGAEYKIVETGADRQPKLQDVKSVAI
                     HPAFKMDAMMAHRATADVALLQLAAPIAAKAPAALGAPTIPVMAGSRFTIAGIGVSVR
                     GDGKSGGTIRVAGLVATGKPGT"
BASE COUNT          871 a         1566 c         1540 g          924 t
ORIGIN      
        1 ttgcgtcccg gccattcctt ccatttcgcc cgcttcggca accattcgag aatccaccac
       61 gcgcccttca gcgaaacatg catctggccc agcgcatcgg ggggaacgta ggtgtgcgtg
      121 ctgctcggcc tgggcttgcc ccagaccaga tgatcgatca tcgtctggtc catgcgcagc
      181 ccggccgcgc gcgcctgctc gatcatccac agcagcggaa atttcgacag gctgctttcg
      241 gcttccggat agccgccacc gacgtcgccg tgcacgccgg caaaccagac ctgacgaatg
      301 tcttgatcgg tctcggtcgc aggatcgaac cgatcggatc gatatccctg cggttctttc
      361 cagcggttga gccggaacat ccggcggcgc tcgtcgatcg acatcgcctg ccggaatttc
      421 ttgacgctgt tgttggtcct cgtgaaacgc agcatttgca tatcgaacag gagatcgtcc
      481 tgccgcggca cgatgaccga agcgactgta tcccagaccc cgatgaactc gatatggata
      541 aggcgccctc cggcgatctg gcggaaatgc caggcttccc tgagctttga atcgtcgggc
      601 ccctcgccgg atcgctgaga ctctgaacta gccctcttgt aggcggcgaa agcgtaaccg
      661 gcgagatcga gctggtcccg tggcaacagc cccatcacat agatgaaggc agccaacact
      721 cgcacggtat aggcgccgcg gctgaagccg aacagaaaga cccggtcgcc ctcctgataa
      781 ttctcgcaca aaaaatggta gccggcgagc acatcttgat cgagtccggc gccagtcgcc
      841 agactgaaca cgccgcgggc ttcctgcttg aaccgtctcc aggtgctttc caagccgatg
      901 gtgccgacgc ccggatgata gtagacccgc tgctcgttat tcttctcgag cacccgaaac
      961 aatttcagca cattcgagat gttggtgccg atctcgttgc cagtgccgtc gcagcaaacc
     1021 actatgtcct tcggcatcga agcccctgcg gtaccggaga atacggttgc gagcataagg
     1081 cagaatgagg aggagatgca atctccaatt gagggtgttt gaattgttgc ctgatttctc
     1141 cacgttgcgc cggcgaacgc aaggccttcg ccgtgacaac gacgtggcgg ggcatgcgcg
     1201 gcctactgat acgcagccac gatatccgac actgcgcgct cgagctgttt tgcggtggcg
     1261 cattggcgga cgatggtgca gaaggtggcg tagcgcggca tttcggaatc gccgaagccc
     1321 caagtcatgc gtccctcggg attgagccag accagccgcc tcgaacgctc gctgatccgg
     1381 cgcaggatat cggcgcgcgg atcgaggttg ttgctgcggg catcgccgag cacgatcacg
     1441 gtggtctgcg gcgtgatcgc gctcatccac tctttctcga aatcggccag cgaattgccg
     1501 tagtcggacg agccgaagcc gaccttggac atgatctcgg ccatcgccgc ttccggcgat
     1561 ttctcttcca ggatatcgct cacctcgatc aaatggccgg agaaggcgaa cgagcggacg
     1621 tcgtcgacca cctcgtgcag gctgtggatc aacagcagga agaaatccga gacgcgcgcc
     1681 accgaaccgg acacgtcgca cagcgccacg atcttcggct tgtcgcgatg cttgcgcttc
     1741 caggcggtga ggaaggggac gctgccccag gcggcatttc tgcgcagcgt ccggcgcacg
     1801 tcgagatggc cgcggcgctg gcgcttgcgc ggctttgagt accgctcgcg caggcggcgg
     1861 gcgatctggc ggatcagcgc ccgcatctgc tcgacctgcc gcggctcgat cctggcgagc
     1921 ggcgcattgc gcaagatatc gttgcgcagg ttttcggctt cctcccgccc ataaagcaac
     1981 agcgcctggg agacggtgtc gcgaaccgtt tcgcgcagcg cgctgagtgc ggcctgcaat
     2041 cgttccgcca acgccggatt gatcgcggtc agatggtcga ggtcgtcgcg caggcgctgg
     2101 atgcccatgg catcgaggat gcggccggaa aagatgccgc gctgggtgaa atagcgaatg
     2161 tcggacaacg acgccgcgcc ggaggcgttg gcgatcgccg ccgccagcgc gttgcggtcc
     2221 tgcgacagca gcatctcggc cagcgggcca agattttcat cgccgccgcc ggcatcgctg
     2281 ggcgattcgg aggcggtgtt ggagccgctc tgctccggat cctcgatctt ggcttcaggc
     2341 gccgtatcct gcgccggctc gggctgattg aagaacagat caaagcagtc gccgagcgcg
     2401 cgcttctcgt cctgcgtctt ggcaagcgtc aacagaaacg tgtcccgcag gatcccgcgg
     2461 tcggcaaagc cgacgctagc gaccgcgcgc atcgcatcga tgctttcggc gggcgagacc
     2521 cggactccgg ctccccgtgc cgcgcgaaaa aagcgatgca ggttctcgcg catcgcgcct
     2581 cacccgaaga cgttttgccg cgacgccttg gcgatgaagg tcgagacctg cggcgttgcc
     2641 gcctcgatgt cggcttcata tttcaggagc acgttcagcg tgtccttgac gatctcatgg
     2701 tcgagctcgg cggcctgcag cagcaccaac acccgcgccc agtcgatggt ctcgcttacc
     2761 gacggcagct tcttcaggtc cagcgtgcgg atctcgtgga tgaagccgac catctgtttg
     2821 cgcagcgtct gcgagatgcc gggcacccgg ctttcgacga tacgctcttc cagcctctgt
     2881 tcggggaagc cgatatgcag atgcaggcag cgccgcttca aggcgtcacc gagatcgcgc
     2941 tcgctgttcg aggtgaggat cacggtcggc ggcgcgacgg cggacacggt gccgagctct
     3001 gggatcgtga cctggaaatc cgagaggatt tccagcaaga gcgattcgaa ctcggcgtcc
     3061 gatttgtcga tctcgtcgat cagcagcacg cagccgaccg gctgctccag cgcctgcagc
     3121 aagggccgcg gctcgacgaa ctccttggag aagaacacgt cgccgaaatc gtgcaactga
     3181 tccagcgcgg cgtgcagcgt tgcggcgccg ccaagcacct cgccgagctt gtccttcagg
     3241 atctgcgtat acagcagctg ttttgcatac ttccactcat agagcgcctt ggcctcgtcg
     3301 aggccctcgt agcactgcag gcggatcagt ttttgttcgc gccaggctgc gattgccttg
     3361 gcgagctcgg tcttgccgac gccggccggg ccctcgacca ggatcggctt ttcgatctct
     3421 tgcgcaagat acaccgcggt ggcgatctgc cggctcgcga tatagccttg cgcggcgagg
     3481 ccgctttcca ctgcctcgat cgaggcctga ggcccgatat cagccaccaa tgtaagctcc
     3541 ggatttgact gaaacgtccg tccgttctgc ctgcgttccc ggcaaagcac aaggctcctg
     3601 tcgggcggca aaggcggagc ggttcgggca ttttccgttc agcgcaatac caggccggtc
     3661 gcagcttcga ggtcggcaag cgcctgcgcc gggctgacca ccttgatggt ggtcatgccc
     3721 atttcgcgcg cgggcttcag gttgacgccg aggtcgtcga gataaacgca attcttcggg
     3781 ttcaccttca gcgtctcgac catcatctgg tagatgcgcg cgtcgggttt tcgcaggccg
     3841 atcctggcgg attcgatgac gtggtcgaaa agcgccatca cctccgcgac gtaaagcgtt
     3901 cgtccggtga ggctgccgat cgcgttcgcc ggcagattgt tggtgatgca gccggtcttg
     3961 aatttggcgt tgatccgctt cagcgcctcg accatttcgg ggcgcaggtc gccccgcagc
     4021 agcggcagca cgtccttgcc acggacttcg gcgccgagcg ccagcgattc ggcggcaaag
     4081 agctgatcga acgcctcgat atcgacttcg gcgcgctcaa acttggccca ggcgttttcc
     4141 agatgattgg cggcgttggt acggcggatg atgtcggcgg gcaatccgcg ctcggtctcg
     4201 aaccgcgtga aggcctcgaa cggtgacgtc gtcagaacgc cgccgaaatc ccagatcacc
     4261 gcctcgatca tgcttcgttg cccgatgctg aatgtgttcg acagcggcta acacggaatg
     4321 acggcgggaa ccagtccgat cggcgggctt ggcgatgacg agaacgcggg ctattgcttc
     4381 gtcgatgaaa cgattgcctc tcgccatctt aagcctcgcg ctgctctttg ttccacccgc
     4441 gcacgccatc gtcggcggcg gcgcgccgac cacagaaggc gtcggccgtt ctgtcgtcac
     4501 catcgtcggc tcgcgcggca atttctgtac cggcgcgctg atcgcgccga agatcgtgct
     4561 gacggcggca cactgtgtgc agcccggcgc ggaatacaag atcgtggaga ccggcgccga
     4621 ccggcagccg aagctgcagg acgtcaagag cgtcgcgata catcccgcgt tcaagatgga
     4681 cgcgatgatg gcgcatcgcg ccaccgccga cgtggcgctg ctgcagctgg cggcgccgat
     4741 cgcggcaaag gcgcctgcgg cactcggcgc gccgacgatt cccgttatgg ccggcagccg
     4801 cttcaccatc gcgggcatcg gcgtcagcgt gcgcggcgac ggcaagagcg gcggcaccat
     4861 ccgtgtcgcc ggcctcgtcg ccaccggcaa gccgggcacg c
//
LOCUS       DASQVK010000201         5919 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_392756,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000201 DASQVK010000000
VERSION     DASQVK010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5919
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392756"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..317
                     /locus_tag="VE567_04315"
     CDS             <1..317
                     /locus_tag="VE567_04315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HYZ48098.1"
                     /translation="PPPPPQISKAAGPKGDPSRFITQDDYPPRALREGAEGTTRITWD
                     INTEGRVENCRVASSSGNADLDDAACRAMTRKGRFSPALDQNGNPIRSSQSRNVKWVI
                     PK"
     gene            377..1210
                     /locus_tag="VE567_04320"
     CDS             377..1210
                     /locus_tag="VE567_04320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HYZ48099.1"
                     /translation="MISHIAFLQESATAAAAKGDNPYGLLPALQQGGVIAWSVFLILV
                     GMSVFSFYILFTKLFEQQKIISQGRKIRQGFWNMTSLREGANKLEKNSAYRQIVDDAL
                     TAQEQHAKLTDPVEAHDWMHGSINRSQGLINSKLNGGLAFLATVGATAPFIGLFGTVI
                     GIYRALIKIGLAGQASIDAVAGPVGEALIMTALGLAVAVPAVLAYNWLQRRNKAIAED
                     LAAFSNDVLGYIMSGGSVKPTAPRQATATASTSTKPGVSTAKPTTTTTAGQVGGVQPK
                     A"
     gene            1294..1773
                     /locus_tag="VE567_04325"
     CDS             1294..1773
                     /locus_tag="VE567_04325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HYZ48100.1"
                     /translation="MAVALGGDDDVPMSDINTTPLVDVMLVLLIIFLIAVPVVIQTIQ
                     VKLPSVRFDPTTTKPENVSLTVRAEKDGSCGVYWGLTKVTASELLDRAVAKLRREIER
                     QGGVNAPGLELPEAHIRGDVNTPYRCIGGAIYTMQLAGFSRVGFISEPPPGGNVQRL"
     gene            1785..2210
                     /locus_tag="VE567_04330"
     CDS             1785..2210
                     /locus_tag="VE567_04330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007688641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HYZ48101.1"
                     /translation="MAISGGRDDGEPMGEMNTTPLIDVMLVLLIMFIITIPIQTHAVK
                     IDLPVNSNQNTPPPIDPIKNKVSVDPSGTVTWNGTPIDLVTLRLYLDRTKAMSPEPEL
                     HVQPDPQSRYEVVDNVLAVIKRSGVTKMGFVGNEQYRAF"
     gene            2280..4766
                     /gene="hrpB"
                     /locus_tag="VE567_04335"
     CDS             2280..4766
                     /gene="hrpB"
                     /locus_tag="VE567_04335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase HrpB"
                     /protein_id="HYZ48102.1"
                     /translation="MKSDYVDLAVTDLPIHMVLPQLLAALRAQSSAVVVAPPGAGKTT
                     AIAPALLAEPWCTGEVLLLSPRRIAARAAAERMAELAGEPVGQSFGYATRLDTRRSAA
                     TRVTVLTEGIFVNRIQADPELAGVSAVLFDEVHERSLDSDFGLALALDAQAALRPDLR
                     LVAMSATLDGGRYAALFGDAPVIESEGRSYPLEMRYLGRAPDLRVEDAVAQAIRRALR
                     EEDGGVLAFLPGVAEIERTAERLGPLPDNVQLHRLHGQIDPAAQRAAIAPAAPCQRKL
                     VLATSIAETSLTLDGVRVVVDSGLARRPRYDRAAGMTRLVTERASQAAVTQRAGRAAR
                     QTPGVTYRLWEEAATAGLPRFDPPEILEADLSPLLLASSIWGVADPRSLRWLDPPPEA
                     AIAEARRRLTSLGALDGEGRPTEHGRRIAGLPLPPRLAHMLIEAERLDILDLAAEAAV
                     LLGERGLGGNDADLELRLQRWRSERGKRADAARGLARRWARLVGSDAGQASLLPQKGR
                     GLGACIALAFPDRVSKRRSADGADWISVGGRGFRLDPASPLARAEWLAVAEVQGAASG
                     ARILSAAPIDVAEVEQLFTERIETGRQVRFDASSGAASAIRERRLGAIRLASGPDADA
                     DPAAIEAALLEGVRTHGLGLLDWPPAAQALRKRAAFAGIDLSDEMLLARLDDWLLPLL
                     AGKRRLDAIGAGALVEALEALIGWDAKRRIDRLAPSHFTSSAGSTHPIDYGAEAGPTV
                     ELRVQALFGVKEHPTIGADRVPLVLSLTSPAGRPIQTTRDLPGFWRGSWAAVAKEMRG
                     RYPKHPWPDDPASAAPTLRTKAADARASRQ"
     gene            4806..5087
                     /locus_tag="VE567_04340"
     CDS             4806..5087
                     /locus_tag="VE567_04340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ETC complex I subunit"
                     /protein_id="HYZ48103.1"
                     /translation="MPSARIFQRPKNATQSGRAGTDQWVLEFISSAPVTADPLTGWNG
                     SADTRPQIRLFFPTIDAAKAYADKHGIDHHVVPAPQPKLKLQAYADNFR"
     gene            complement(5100..5627)
                     /locus_tag="VE567_04345"
     CDS             complement(5100..5627)
                     /locus_tag="VE567_04345"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HYZ48104.1"
                     /translation="MTQPPEEPVETVWAGKYVEAKRQGRWEFVGRANNIHAAVIVAID
                     DGHVLLVEQYRVPLGAPCLELPAGLVGDIEQGETVEVSAARELEEETGYRPKHIEIVG
                     RFASSPGMLSETFTLVKAHGLTKVGDGGGDAHEDIVVHRVPLADVPAFVAGKRAEGCF
                     IDVKMLLLLGQSILP"
     gene            complement(5624..>5919)
                     /locus_tag="VE567_04350"
     CDS             complement(5624..>5919)
                     /locus_tag="VE567_04350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017500265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48105.1"
                     /translation="LIFQVGTERRTATRTGVLLYLSLAERRAEIVADASIQSKISGEE
                     WGEAMVALLDGVRGGRPGDGMAAAIGRIGDVLAKHFPRTDTDPNELPDRLIRL"
BASE COUNT          978 a         2010 c         1948 g          983 t
ORIGIN      
        1 caccgcctcc gccgccgcag atctcgaaag cggccggccc caaaggtgat ccgtcccggt
       61 tcatcacgca ggacgactat ccgccgcgcg cacttcgcga aggggcggaa ggcaccacgc
      121 gtatcacctg ggacatcaac accgaggggc gcgtggaaaa ttgccgggtc gcttcgtcaa
      181 gcggcaatgc cgatctcgac gacgctgcct gccgagcgat gacccgcaag ggccgtttct
      241 cgccggcgct cgaccagaac ggcaatccga tccggagctc ccagtcccgg aacgtgaagt
      301 gggtcatccc gaagtaatgg cggtgctgcg cttttcgcag cgtcgagagt ctgaactatt
      361 ctagaggatt attagcatga tcagccatat cgctttcctt caggagtcgg ccacggcggc
      421 cgcggcgaag ggtgacaacc cctacggcct cctgccagca ctgcaacaag gcggcgtgat
      481 cgcctggtcc gtcttcctta tcctagtggg catgtcggtc ttttctttct acattctgtt
      541 cacgaaactg ttcgagcagc agaagatcat cagccagggc cgtaagatcc gtcagggctt
      601 ctggaacatg accagcctgc gcgaaggcgc gaacaagctg gagaagaact cggcctatcg
      661 ccagattgtc gacgatgcgc tgacggcgca ggaacaacat gccaagctga ccgatccggt
      721 cgaggcgcat gactggatgc acggctccat caaccgtagc cagggcctca tcaactccaa
      781 gctgaacggt ggcctggcct tcctggcgac cgtgggcgcc accgcgccgt tcatcgggct
      841 gttcggtacc gtgatcggca tctatcgcgc gctcatcaag atcggcctgg ccggccaggc
      901 gtcgatcgac gccgtcgcgg gcccggtcgg tgaggcgctg atcatgaccg cgctcggtct
      961 cgccgtggcg gtgccggcgg tgctggccta caactggctg cagcgccgca acaaggcgat
     1021 cgcggaagac ctggccgcgt tctcgaacga cgtgctcggc tacatcatgt cgggcgggtc
     1081 ggtgaagccg accgcgccgc gtcaggctac cgcgactgcg tccacttcga ccaagccggg
     1141 cgtcagcacc gccaagccga cgaccaccac gaccgccggt caagtcggcg gcgtgcagcc
     1201 gaaggcctaa agttcgggag gcgagcgcat gagtgcgctc gccgtcccct tccgccggag
     1261 cgttttccgg cggcaaagac aggataggat cctatggcag tagcactcgg gggcgatgac
     1321 gacgtcccca tgtcagacat caatacgacg cccctcgtgg acgtcatgct ggtgttgctc
     1381 atcatctttt tgatcgcggt tccggtcgtc atccagacga tccaggtgaa gctgccgagc
     1441 gtgcgcttcg atcccacgac caccaagccg gaaaacgtct cactgaccgt ccgcgccgaa
     1501 aaggacggat cgtgcggcgt ctattggggc ctcaccaagg tgaccgcttc ggagctgctc
     1561 gaccgggcgg tggcaaaatt gcgccgtgag atcgagcggc agggcggcgt caacgcgcct
     1621 ggtctcgaac tccccgaggc acatatccgc ggggacgtga acacgcctta ccggtgcatc
     1681 ggcggcgcga tctacaccat gcagctggcc ggcttcagcc gggtcggctt catttccgaa
     1741 ccgccgccgg gcggcaacgt ccagcgcctg taaggagagc aaccatggca atcagtggtg
     1801 gccgcgacga cggcgaaccg atgggcgaaa tgaacacgac gccgctcatc gacgtcatgc
     1861 tcgtgctcct catcatgttc atcatcacca ttccgatcca gacccatgcg gtgaagatcg
     1921 acctgccggt gaacagtaac cagaatacgc cgcctcccat cgacccgatc aagaacaagg
     1981 tctcggtcga tccttcgggc accgtcacct ggaacggcac gccgatcgac ttggtgacgc
     2041 tgcgccttta tctcgaccgc accaaggcga tgagcccgga gcccgagctg cacgtgcagc
     2101 ccgatcccca gtcgcgctat gaagtggtcg ataacgtgct ggccgtcatc aagcggtccg
     2161 gcgtgaccaa gatgggcttt gtcggcaacg agcaatatcg cgcgttctga cgatcgcctg
     2221 atcgatctca tgaagggcgg gccaatcggc tcgccctttt tgtttgcgct ttcaccgcga
     2281 tgaagagtga ttatgtcgac ctcgcggtga ctgatctccc catccatatg gtgcttcccc
     2341 agctgctcgc ggcgcttcgc gcccagagca gtgcggtcgt cgtcgcgccg ccgggtgcgg
     2401 gcaagacgac ggcaatagcg cccgcactgc tggcggaacc ttggtgcacc ggcgaagtgc
     2461 tactgctttc accgcgccgg attgcggcgc gtgccgccgc cgagcggatg gcggaattgg
     2521 ccggcgagcc tgtcgggcag agtttcggct atgcgacgcg gctggacacg aggcgctctg
     2581 ccgcaacgcg cgtgaccgtc cttaccgaag gcattttcgt caatcgcatc caggccgatc
     2641 ccgagcttgc gggcgtctcc gcggtactat tcgacgaagt gcatgagcgc agccttgata
     2701 gcgatttcgg ccttgcgctc gccctcgacg cgcaggcggc gttgcggccg gatctcaggc
     2761 tcgtggccat gtcggcgacg ctggatggcg ggcgctatgc ggcgctgttc ggcgacgcgc
     2821 ctgtaatcga gagcgaaggc cgctcctatc cgctagaaat gcgctatctc ggccgagcgc
     2881 cggatctgcg ggtggaggat gccgtggcgc aggcgatccg ccgcgccttg cgcgaggagg
     2941 atggcggcgt gctcgctttc ctgcctggcg tggccgagat cgagcgcacg gccgagcggc
     3001 tcggcccgct gcctgacaat gtgcagctcc atcgcctgca cggccagatc gatcctgccg
     3061 cccagcgcgc ggcgattgcg cccgcagcac cttgccagcg caagctggtg ctcgcgacgt
     3121 cgatcgcaga gaccagcctg acgctcgacg gcgtgcgcgt cgtcgtcgat tccgggctgg
     3181 cccggcgtcc gcgctacgac cgagccgcgg gcatgacacg gctcgtcacg gaacgggcga
     3241 gccaggccgc ggtcacccag cgcgccggcc gcgcggcccg ccagacgccg ggcgtgacat
     3301 accggctgtg ggaggaagcc gcgactgccg gcctgccgcg cttcgatccg cccgaaatcc
     3361 tggaagccga tctgtcgccg ctgctgcttg cttcaagcat ctggggcgtt gccgatccgc
     3421 gcagcctccg ttggctcgat ccgccgcccg aggcagcaat tgcggaggcg cggcggcggc
     3481 tcaccagcct cggcgcgctc gacggggaag gacgcccgac cgagcatggc cgccgcatcg
     3541 ccggcctgcc gttgccgccg cgccttgcgc atatgctgat cgaagcggag cggctggaca
     3601 ttctggatct cgccgccgaa gccgcggtgc tgctcggcga gcgcgggctg ggcggcaacg
     3661 acgcagatct ggagctgcgg ctccagcgct ggcgcagcga gcgcggcaag cgcgcggatg
     3721 ccgcgcgcgg gctggcgcgg cgatgggcga ggctggtcgg gtccgatgct gggcaggcga
     3781 gtctcctccc gcagaagggg cgcggcttgg gagcctgcat cgcgctcgcc tttccggatc
     3841 gcgtctcgaa gcgccgctcc gccgacggag ccgattggat cagcgtcggc ggccgtggct
     3901 ttcgcctcga cccggcgtcg ccgctcgccc gcgccgagtg gctcgctgtg gccgaagtgc
     3961 agggcgcggc ctccggcgcc cgcatcctgt ccgccgcgcc gatcgacgtg gcggaggtgg
     4021 agcagctctt taccgagagg atcgagacag ggcgccaggt gcgtttcgac gcttcgagcg
     4081 gcgccgcctc ggcgatacgc gagcgacggc tgggcgcgat ccgcctcgcg tccggacccg
     4141 acgccgatgc tgatccggcc gcgatcgagg cggcgctgct ggagggcgtg cgcacgcatg
     4201 gcttgggcct gctcgactgg ccgcccgccg cccaggcgct acgcaagcgt gcggcctttg
     4261 ccggcatcga tctaagcgac gagatgctgc tcgcgcgcct ggacgattgg ctgctgccgc
     4321 tgctcgcggg caagcggcgg ctcgacgcaa tcggggcggg ggcgttggtc gaggcgctcg
     4381 aagcgctgat cggctgggac gcgaagcgcc gcatcgaccg gctcgcgccg tcccatttca
     4441 cctcgtccgc aggcagcacg catccgatcg actatggggc cgaggccgga cccacggtcg
     4501 agctgcgcgt gcaagcgctg ttcggggtga aggagcaccc gaccatcggt gccgatcggg
     4561 tgccgctcgt gctgagcctc acatcgcctg caggccgccc gatccagacc acgcgcgact
     4621 tgccgggctt ctggcgcggc agctgggccg cggtcgcgaa ggaaatgcgt ggccgctatc
     4681 ccaagcaccc ctggcccgac gatcccgcca gcgctgcacc gacgctgcgg accaaggcag
     4741 cggatgcgcg cgcctcgcgt caatgaggct tcaaaccgca ccatttcgcg gctaagcgca
     4801 gctccatgcc cagcgcccgc attttccagc gcccgaagaa cgccacccaa tccggccgtg
     4861 ccggcaccga tcagtgggtg ctcgaattta tttcgagcgc gcccgtgacc gccgatccgc
     4921 tgaccggctg gaacggctcc gccgatacgc gcccgcagat ccgcttgttc ttcccaacga
     4981 tcgatgcggc caaggcctat gccgacaagc acgggatcga ccatcatgtc gtgccggcgc
     5041 cccagccaaa gctcaagctg caggcttacg ccgacaattt cagataggtc ctgcccgttt
     5101 cagggaagga tcgactggcc cagcaacagc agcatcttca cgtcgatgaa gcagccctcg
     5161 gcgcgcttgc cggcgacgaa cgccggtaca tcggccagcg gcacgcggtg gacgacgatg
     5221 tcctcgtgcg catcgccgcc gccgtcgccg actttggtca ggccgtgcgc cttcaccaag
     5281 gtgaaggtct cggacagcat gccgggtgag gatgcgaagc ggccgacgat ctcgatgtgc
     5341 ttcggccgat agccggtttc ctcctccagc tcgcgggctg cggagacttc gacggtctcg
     5401 ccttgctcga tatcgccgac cagacctgcc ggtaattcca ggcacggggc gcccagcggc
     5461 acgcgatatt gctcgaccag cagcacatgg ccgtcgtcga tagcaacgat caccgcggcg
     5521 tgaatgttgt tcgcgcggcc gacgaactcc catcggccct ggcgcttcgc ctcgacatat
     5581 ttgccggccc aaacggtctc gaccggctct tctggtggtt gggtcatagg cgaatcaaac
     5641 ggtccggcag ttcgttcggg tcagtgtccg tacggggaaa atgtttcgcc aacacgtcgc
     5701 cgatccggcc gatcgccgcg gccatgccat cgcccggccg cccgccgcgc acgccgtcca
     5761 gcagcgcgac catcgcctcg ccccattcct cgccagaaat tttggattgg atgcttgcgt
     5821 ccgcgacgat ctccgcccgg cgttcggcaa ggctgagata gagcagtacg ccggtgcgcg
     5881 tcgcagtgcg gcgctcggtg ccgacctgga agataagga
//
LOCUS       DASQVK010000202         4027 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_44427, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000202 DASQVK010000000
VERSION     DASQVK010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4027
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44427"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1526)
                     /gene="nadB"
                     /locus_tag="VE567_04355"
     CDS             complement(<1..1526)
                     /gene="nadB"
                     /locus_tag="VE567_04355"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008734 - L-aspartate oxidase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HYZ48106.1"
                     /translation="MASEAQAYDVVILGSGAAGLTAALNLADRFRVVVLAKGGLSEGS
                     TAWAQGGIAAVLDESDTFDKHIDDTMIAGAGLNDRRTVEFVVENAPAAIARLVELGVP
                     FNEEAGALHLTREGGHSHRRIVHVDDATGWAVQQALERAAHAHPNITLVPDRVAIDLI
                     TGRHGVRYSGDGHVWGVYAVNRQTGHVELFTGRATILATGGAGRTYLYSTAPRGATGD
                     GIAMAWRAGCRVSNMEFMQFHPTCLYNLEVKNFLITEAVRGEGGMLKLPTNGHRFMPD
                     FDERAELAPRDVVARAIDHEIKRLGLDYVHLDISHQPPEFVKGHFPTIDAKLLSLGID
                     ITREPIPVVPAQHYTCGGVVIDLDGRTDLPGLYAAGEVSQSGLHGANRLASNSLLECF
                     VFGESAAKDIAASWDELPPPPPIRPWDESRVTHSDEEVIVQHNWREIRRFMWDYVGIV
                     RTTKRLERAQHRIALLRQEVADYYGHFRVTPDLIELRNLVEVADLIIRSALSRKESRG
                     L"
     gene            complement(1638..2555)
                     /locus_tag="VE567_04360"
     CDS             complement(1638..2555)
                     /locus_tag="VE567_04360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010545124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYZ48107.1"
                     /translation="MSDAAISIRDLAKTYKGGKRALDGVTFDVPRGQIFGLLGPNGAG
                     KSTLINILSGMVLKTGGSASIWGFDIDEHPRNAKASIGVVPQEIVFDPFFTPYETLEL
                     FAGLYGVPRAERRSMELLRAVHLEDKKDAYSRTLSGGMKRRLLVAKAMVHSPPVLVLD
                     EPTAGVDIELRQQLWAYVRELNTQGVTVVLTTHYLEEAEELCDRIAIINHGRLIANEP
                     TRELVNKAQEKLVEVTVDRDLDAPPDAPCFEKAVLKGSRVLEITYSKAKVNAGQVLAA
                     VSEAGLGIVDVSTKEADLEDVFLSLTRAA"
     gene            2616..2819
                     /locus_tag="VE567_04365"
     CDS             2616..2819
                     /locus_tag="VE567_04365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017669532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-finger domain-containing protein"
                     /protein_id="HYZ48108.1"
                     /translation="MIPPPETFRVTSRRVACDGSGHGVDPALGHPRIYIEIDERGYGE
                     CGYCDRRFVLAGGPADDEALPAY"
     gene            2864..>4027
                     /locus_tag="VE567_04370"
     CDS             2864..>4027
                     /locus_tag="VE567_04370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase TldD-related protein"
                     /protein_id="HYZ48109.1"
                     /translation="MTLPADPRAWLYRADLDPDTALKLTADALKSCDDGELYLQYQTS
                     ESFGFDDGRLKTADYSTHAGFGLRGVSGEMTAFAHANELSAAAIRRAAETMRLLDPAK
                     GQPAPPPRRSNRHLYTADDPLALVPFAEKVALCQRIDAAARARDPRVSQVSVGLSGSW
                     SVVEIVRPDGFVAQDVRPLVRLNIGIVVEANGRRETGSYGMGGRYLYGRLFEEAAWQR
                     GIDIALGQALVNLESVAAPAGEMTVVLGHGWPGVLLHEAIGHGLEGDFNRKGTSAFAG
                     RIGERVAAPGVTVVDDGSIQDRRGSLSIDDEGTPTRETVLIEDGILKGYMQDRLNARL
                     MGVQPTGNGRRQSYAHAPMPRMTNTFMKAGSDDPSEMFARAKTGIYAKSFGGGQ"
BASE COUNT          659 a         1318 c         1350 g          700 t
ORIGIN      
        1 aggccgcggc tttccttgcg agagagggcc gagcggatga tgagatcggc gacctctacc
       61 aggttgcgaa gctcgatcag gtcgggcgtg acgcggaaat gcccgtaata atcggcgact
      121 tcctgccgca gcagcgcgat ccggtgctgc gcgcgctcca gccttttggt cgtgcggacg
      181 atgccgacat agtcccacat gaagcgacgg atttcgcgcc aattatgctg gacgatgact
      241 tcctcgtccg aatgggtgac gcggctttcg tcccaaggcc ggatcggggg aggcggcggc
      301 agctcgtccc aggaggcggc gatatccttg gccgcggact cgccgaacac gaaacattcg
      361 agcaaggagt tggaagcaag ccggttggcg ccgtgcaggc ccgattgcga gacttcgcct
      421 gctgcgtaga ggccgggcag atcggtgcgg ccgtcgagat cgatcaccac gccgccgcac
      481 gtgtaatgct gcgcggggac gaccggaatc ggctctctgg tgatgtcgat gccgagcgac
      541 agcagcttgg cgtcgatggt cgggaaatgg ccctttacga attcgggcgg ctggtggctg
      601 atgtcgagat ggacatagtc caggccgagg cgcttgatct cgtggtcgat ggcgcgggcg
      661 acgacgtcgc gcggggcgag ctcggcccgc tcgtcgaagt ccggcatgaa gcgatggccg
      721 ttggtcggca gcttcagcat gcccccttcg ccgcggacgg cctctgtgat caggaaattc
      781 ttgacttcca gattgtagag gcaggtcggg tggaattgca tgaattccat gttcgagacc
      841 cggcacccgg cgcgccacgc catggcgatg ccgtcgccgg tcgccccgcg cggcgcggtc
      901 gaatagagat aggtacgtcc cgcgccgccg gtcgccagga tcgtcgctcg gccggtgaac
      961 agctcgacat gcccggtttg gcgattgact gcataaacgc cccagacatg cccgtcgccc
     1021 gaatagcgga caccgtgacg gccggtgatg aggtcgatcg ctacccggtc gggcaccaag
     1081 gtgatgttcg gatgggcatg ggcggcgcgt tcgagcgctt gctgcacggc ccagccggtc
     1141 gcatcgtcga catgcacgat ccggcgatgg ctgtgcccgc cttcgcgcgt caggtgcagg
     1201 gcgcccgctt cctcgttgaa gggcacgccg agttcgacca gccgcgcaat ggcggcgggc
     1261 gcgttctcga ccacgaactc gaccgtccgc cggtcgttga gcccggcgcc ggcaatcatc
     1321 gtgtcgtcga tatgcttgtc gaacgtgtcg ctttcgtcga gcaccgcggc gatgccgccc
     1381 tgcgcccagg cagtcgatcc ttccgaaagg ccgcccttcg caagcacgac gacccgaaac
     1441 cggtcggcca ggttcagcgc ggccgtcagc cccgctgcgc ccgagccgag gatcacgacg
     1501 tcataggctt gcgcttcgga tgccactctt gtctccgttc gggattgctt gcgaggcgtc
     1561 cccctgcttg tcacaaagcc gtaagaagta gggaggcctt cgacaagctc gggccgaacg
     1621 gcgcttgggg attttgttca ggcggcgcgg gtgaggctca ggaacacgtc ttccagatcg
     1681 gcttccttcg tcgagacgtc gacgatgccg agtcccgcct cgcttaccgc cgccagcacc
     1741 tggccagcat tcaccttcgc cttggaatag gtgatctcga gcacgcggct gcctttcagc
     1801 accgccttct cgaagcaggg cgcgtcgggc ggcgcgtcga gatcgcggtc gacagtgact
     1861 tcgaccaatt tctcctgcgc cttgttgacc agctcgcgcg tcggctcgtt cgcgatcaga
     1921 cggccgtgat tgatgatcgc aatccggtcg cagagctctt cggcctcctc aagatagtgg
     1981 gtggtgagga cgaccgtaac gccttgcgtg ttcagctcgc gcacataagc ccagagctgc
     2041 tggcggagct cgatatcgac gccggcagtc ggctcgtcga gcaccagcac gggcggcgaa
     2101 tgcaccattg ccttggcaac cagcagccgc cgcttcatgc cgcccgaaag cgtgcgcgaa
     2161 taggcgtctt tcttatcctc cagatgcacc gcgcggagga gctccatcga tcgccgctcc
     2221 gccctcggca cgccgtaaag gccggcgaac agctccagcg tctcataagg cgtgaaaaag
     2281 ggatcgaaga cgatttcctg cggcaccacg ccgatcgacg ccttggcgtt gcgcgggtgc
     2341 tcgtcgatgt cgaagcccca gatcgaagcc gagccgccgg tcttcagcac catgccggac
     2401 aagatgttga tgagcgtcga cttgcccgcg ccattggggc cgagcagccc gaaaatctgc
     2461 ccgcgcggca cgtcgaaggt cacgccgtcc agcgcgcgct tgccgccttt gtaggtcttc
     2521 gcgagatccc gtatcgagat ggcggcgtcg ctcatatcgc cgccctagcc ggagagggct
     2581 ggaaagggca acgcgccatt gctatcgcgc ccctcatgat cccgccgcca gagactttcc
     2641 gcgtcacttc ccgccgcgtc gcttgcgatg gctccggcca cggcgtcgat ccggcgctcg
     2701 gccatccgcg catctatatc gagatcgacg agcgcggcta tggcgagtgc ggctattgcg
     2761 accgccgctt cgtgcttgcc ggcggccccg cggacgacga ggccctaccg gcttattgac
     2821 gtttggagtg gtgcggagcc gctcgggccc tatatctgtg gtgatgactc tccccgccga
     2881 tccgcgcgcc tggctttacc gggcggacct cgaccccgac accgcgctca aactgaccgc
     2941 cgacgcgctc aagagctgcg acgacggcga gctttacctg caatatcaga cgtcggagag
     3001 cttcggcttc gacgacggtc gcctgaaaac ggccgactat agcacccatg cgggcttcgg
     3061 cttgcgcggg gtctcgggcg agatgacggc cttcgcgcat gcgaacgagc tgagtgcggc
     3121 ggcgatccgg cgcgcggcgg agacgatgcg gctgctcgat cccgccaagg gccagcccgc
     3181 gccgcccccg cggcggagca atcgccatct ttataccgcc gatgatccgc tggccctggt
     3241 gccgtttgcc gagaaagtcg cgctgtgcca gcggatcgac gccgcggcgc gagcccggga
     3301 tccccgggtg tcgcaagtct cggtcggcct gtccggatcg tggagcgtcg tcgagatcgt
     3361 gcgaccggac ggcttcgtcg cgcaggacgt gcgtccgctc gtgcggctca acatcggcat
     3421 cgtcgtcgaa gcgaatggcc ggcgcgagac cgggtcctac gggatgggcg gccgttacct
     3481 ctacggtcgg ctgttcgagg aagcggcctg gcagcgcggc atcgacatcg cgctcggcca
     3541 ggcgctggtg aatcttgagt cggtcgcggc gccggcgggc gagatgaccg tggtgctcgg
     3601 ccacggctgg cctggcgtgc tgcttcacga ggcgatcggc cacggcctgg agggcgattt
     3661 caaccgcaag ggcacctccg cctttgccgg ccggatcggc gagcgcgtcg ccgcccccgg
     3721 cgtgacggtg gtcgatgacg gttcgatcca ggaccgccgc ggctcgctca gcatcgacga
     3781 cgaaggcacg cccacgcgcg aaacggtgct gatcgaggac gggatcctca aaggctatat
     3841 gcaggacagg ctgaacgccc ggctgatggg cgtccagccc accggcaatg gccgccgcca
     3901 atcctatgcc catgcgccga tgccgcgcat gaccaacacg ttcatgaagg ccggcagcga
     3961 cgatccctcc gagatgttcg cgcgtgcgaa gaccggcatc tatgccaaga gcttcggcgg
     4021 cgggcag
//
LOCUS       DASQVK010000203         2633 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_171285,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000203 DASQVK010000000
VERSION     DASQVK010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2633
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171285"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..296)
                     /locus_tag="VE567_04375"
     CDS             complement(<1..296)
                     /locus_tag="VE567_04375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48110.1"
                     /translation="MTEEDEFLAAEHALGLADAQAREDSDPAFATAVEAWRARLDPLL
                     GPERAPSPELWNHIVARLPANDDPARPWRFATFAASAAAAALLGVIVLRPGSEAP"
     gene            complement(293..874)
                     /locus_tag="VE567_04380"
     CDS             complement(293..874)
                     /locus_tag="VE567_04380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011413200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYZ48111.1"
                     /translation="MKRIRTAVAQDAGEARAELARSLSAVAAGDRQAFHLVYRRTSSK
                     LFGICCRILGEGQDAEDALQEAYVNVWRRAERFDASRASPITWLAAIARNTAIDRLRA
                     RGTRTNAPIEEAHDVADPEPRSDAVLEQAGEARRLQGCLGELGARDAALIRTAFLEGT
                     SYPELAARANEPLGTIKSRIRRALMKLKECLCR"
     gene            complement(942..1871)
                     /locus_tag="VE567_04385"
     CDS             complement(942..1871)
                     /locus_tag="VE567_04385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003047438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYZ48112.1"
                     /translation="MFDWNDARFFLAVAESGSTLAAGRALRVSQTTVARRIAALEEAL
                     GLTLFDRRRAGYALTPAGEALLAEARGVRGSAQALAEAAAAQKRDVSGIVRLTAEESF
                     VIGVLPPMLRELHELHPEILVELDASEEVRDLEAGGADVAIRVTKRLDGAGLVGRRIG
                     DDMWTVYCSRAYGEAHGIPRNRRELATHPLISGGGGQIGRYYGIWLRENGLEHAVAMQ
                     HGTVSGLFSAVRSGLGLAALPCLVAELDDDLVRCLPPAASGAREVWLLTHERLRHTPR
                     VRAVLDLLGERLRCHARQIEERLATHPHGLAAA"
     gene            1997..2314
                     /locus_tag="VE567_04390"
     CDS             1997..2314
                     /locus_tag="VE567_04390"
                     /inference="COORDINATES: protein motif:HMM:TIGR04433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UrcA family protein"
                     /protein_id="HYZ48113.1"
                     /translation="MKTLLFAASLAALGLASPASAQPVTARATVSTAGLDLGTAAGQH
                     ALDLRILHAASALCGTPSPADQRGRAGFDTCRAQARAAALADRDRAVALARRESTGIV
                     ASR"
BASE COUNT          383 a          990 c          853 g          407 t
ORIGIN      
        1 ggcgcttcgc tgccgggacg cagcacgatc acgccgagca acgccgccgc cgccgcgctt
       61 gccgcaaacg tcgcgaaacg ccacggccgg gcgggatcgt cgttcgccgg cagccgcgcg
      121 acgatgtggt tccacagctc cggcgacggc gcgcgctccg gcccgagcag tgggtcgagc
      181 cgcgctcgcc acgcctcgac cgcggtggcg aaggccggat cgctgtcctc ccgcgcttgc
      241 gcatcggcca gccccagcgc atgttcggca gcaaggaact cgtcttcctc ggtcaccggc
      301 agagacactc tttcagcttc atcagcgcgc gccggatgcg gcttttgatc gtgccgagcg
      361 gctcgttcgc gcgcgccgcc agttctggat agctcgtgcc ttccaggaaa gcggtgcgga
      421 tcagcgccgc gtcgcgcgct ccgagttcac cgaggcaccc ctgcagccgc cgcgcttcgc
      481 cggcctgctc cagcaccgcg tcggagcgcg gctcgggatc ggcgacgtca tgggcctcct
      541 cgatcggcgc gttcgttcgc gtgccccgcg cgcgcagccg gtcgatcgcg gtgttgcggg
      601 cgatcgccgc cagccatgtg atcgggctgg cgcgcgacgc gtcgaagcgc tccgcccgcc
      661 gccacacatt cacataggct tcctgcaatg catcctccgc atcctggcct tcgcccaaga
      721 tacggcagca aatgccaaaa agtttcgatg aggtgcgccg atagaccagg tgaaaagcct
      781 gccggtcgcc tgctgccact gccgacagag accgggccag ctcggcccgc gcctcgcccg
      841 cgtcctgcgc aaccgctgtc cgaatgcgct tcatcgcccg cgagcccccc gattcgagcg
      901 ctcaccaccc tagcggaccg ccccgccggc gcaatgcgcg atcaggccgc cgccagtccg
      961 tgcgggtgtg tggcgaggcg ttcctcaatc tgccgcgcat ggcagcgcag gcgctcgccc
     1021 agcaagtcga gcaccgcgcg cacgcggggc gtgtggcgca gcctttcatg cgtgagcagc
     1081 cagacttcgc gggcgccgga cgcggccggc ggcaagcagc ggacgaggtc gtcgtccaac
     1141 tcggcgacca ggcagggcag cgctgccagc ccgaggccgg accgcaccgc cgagaacagg
     1201 ccgctgactg tgccgtgctg catggcgacc gcatgttcca gcccgttctc gcgcagccag
     1261 atgccatagt agcggccgat ctgtccgccg ccgccgctga tcagcgggtg cgtcgcgagt
     1321 tcgcggcggt tgcgcgggat gccgtgcgcc tcgccatagg cgcggctgca atagacagtc
     1381 cacatatcgt cgccgatccg ccgcccgacc agccccgctc catcgagtcg cttcgtgacg
     1441 cggatcgcga cgtccgcgcc gcctgcctcc aggtcacgca cttcctcgct cgcatcaagc
     1501 tcgaccagga tttcgggatg aagctcgtgc aattcccgca gcatcggcgg gagcaccccg
     1561 atcacaaacg attcttcggc cgtcagccgc acaatgccgc tcacgtcgcg cttctgcgcc
     1621 gccgcggctt cggcaagcgc ctgggcggac ccccgtacgc cccgcgcttc ggccagcagc
     1681 gcttcgcccg caggcgtgag cgcatagccg gcgcggcgcc ggtcgaagag cgtaaggccc
     1741 agcgcctcct ccagcgctgc gatgcgccgc gcgaccgtgg tctggctgac gcgcagcgcc
     1801 cggcccgcgg caagcgtgct gccgctctcc gcgactgcca ggaagaatcg cgcgtcgttc
     1861 cagtcgaaca tggggccatt ctgcactttt gcagaacggt cgcgcaacat cgttgctcac
     1921 gccaatcgtc cggaagctgt agggagagtc tcacgtcggc cggcggctcc tcttcctcga
     1981 actctcggag accgtcatga agaccttgtt gttcgccgct tcgcttgcgg cgctggggct
     2041 cgcgagcccc gcatccgccc agcccgtgac cgcccgcgcg acggtcagca ccgccgggct
     2101 cgacctcggc accgccgcgg ggcagcatgc gctcgacctg cgcattctgc atgccgcatc
     2161 cgcgctgtgc ggcacgccgt cgcccgcaga ccagcgcggc cgggcagggt tcgacacgtg
     2221 ccgcgcccag gcccgcgccg ccgccctggc ggaccgcgac cgcgcggtcg cgctcgcacg
     2281 ccgggaatcg accgggatcg tcgccagccg ctgaccaatg attgtgcgcc cgcccaaact
     2341 tggactatga agtccgttgg cgggcgcacc taagcctcga tcgttctgta agtgaaactc
     2401 ccgaagcgct cgcacgttta tttcagccga cagtacgcgg gcaaagtatt cgcggcagcc
     2461 cttcggggga gagtcaagta tgcgtgggtt gtccaagtcc ccgccggaca agtcccggcg
     2521 gcattttttc gtcgatgcga aaggccgagt gcggcccgcg ctcggcctta cgcggggcgc
     2581 gcttcccttg acgctcgcgg gtgccgccac acttatcgtc gccgacccct ata
//
LOCUS       DASQVK010000204         3775 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_456472,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000204 DASQVK010000000
VERSION     DASQVK010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3775
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_456472"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..969)
                     /locus_tag="VE567_04395"
     CDS             complement(<1..969)
                     /locus_tag="VE567_04395"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HYZ48114.1"
                     /translation="MERSSGNSSGPAVPSARSPRALSLVPLAAAVVTIGALYLAKAVL
                     VPIVLAVLLAFVLAPLVALLRRLRFGRTPSVVIAMLIALGAIGLTGLVIGQQLAALAP
                     DVPDYATTIQKKVKALGRSSVARLPEQISRVASRFEAPPAPIPNARLSRRATQPIPVE
                     VHEPPESPWQTARRLLTPVLGPLETILIVLVVAIFVLLQREDLRDRAIRLFGSSDLHR
                     TTRAIDEAAGRLSRYFLAQLMINGLFGCVIAIGLYWIGIPSPLLWGLVAAIMRFVPYV
                     GAFLAALPPLLLAVGAEPDWTYAILTALLFLITEPVMGYVVEPLVYG"
     gene            1116..2162
                     /locus_tag="VE567_04400"
     CDS             1116..2162
                     /locus_tag="VE567_04400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008831735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sulfate exporter family transporter"
                     /protein_id="HYZ48115.1"
                     /translation="MPAAADLFGDLLEVQATRPPARPWTRFLIYAPGLGVTALAALAA
                     AWLGDHYHAPLMLMGLLIGLAFNFLSADARLHAGLGFASKTLLRWGIVLVGLQVTVWQ
                     IAALGWPSFVAIGLMILIVMGVGTLTSRALGLGAAFGTLAGGSVAICGASAALALSSV
                     LGEKRINQAQLTLVLVAVSAASALAMSTYPILSAALGLSPHAAGFLLGASIHDVAQAL
                     GAGYSMGEVQGQTAAIVKLTRVSLLAPTLLLVTLALPKDDGAKTGAPLVPWFIVTFLA
                     LTAFNSVVALPAPVASTAKIGTTALLLLAVVATGIRSPMHLLLKQGWRASMPVVAATV
                     VSFLLALGAAELLF"
     gene            2216..2677
                     /locus_tag="VE567_04405"
     CDS             2216..2677
                     /locus_tag="VE567_04405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007682761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HYZ48116.1"
                     /translation="MAGRYFEEWTVGDRLEHEIRRTVTVTDNLLISTLTHNPQPLHLD
                     LEAARASEFGQILVNGTFTFALMVGVSVGDTTLGTLIANLGYDKVTMPAPVFIGDTLR
                     AETEVLELRESLSRPGAGIVTFEHTMYNQRNQLVCRCLRSALVKRRHPKQK"
     gene            2674..3507
                     /locus_tag="VE567_04410"
     CDS             2674..3507
                     /locus_tag="VE567_04410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HYZ48117.1"
                     /translation="MRLRSLLFVPGDRPDRMVKALAAGADALILDLEDSVAPANKRAA
                     RRAIADFLDGTERSCKLFVRLNPLDSEFCDDDLAEVLDSRPDGLVLPKAEGAASVRKL
                     ADRSSIPILPIASETPAAVFRLGDYAEVAGALAGLTWGAEDLPAAIGAAASRDESGAY
                     LPPYQLVRALVLFGAAAAGVSPIETVYPDIKDLTGLQRTAETAARDGFTGMMAIHPAQ
                     VPVINAAFTPAPEAVEKARAIVAAFEANPDAGALQLDGKMIDAPHLKQARRILERAAL
                     S"
     gene            complement(3512..>3775)
                     /locus_tag="VE567_04415"
     CDS             complement(3512..>3775)
                     /locus_tag="VE567_04415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYZ48118.1"
                     /translation="ATSRHFTSRGVRPFFALRTFDDGRALALVQAGLGITVMPESFNA
                     PDVVRPKLAGFDERRTIGLCYAAGLDEQRRAASPVLAALRRMG"
BASE COUNT          605 a         1280 c         1281 g          609 t
ORIGIN      
        1 gccatagacg agcggctcga cgacatagcc catcaccggc tcggtgatca ggaacagcag
       61 cgcggtgagg atcgcgtaag tccagtcggg ctcggcgccg accgcgagca gcagcggcgg
      121 cagcgcagcg aggaacgcgc ccacataggg cacgaagcgc atgatcgccg cgacaaggcc
      181 ccagagcagc ggggagggaa tgccgatcca gtaaaggccg attgcgatca cgcagccgaa
      241 caggccattg atcatcagtt gcgcgaggaa atagcgcgac agccggcccg ctgcttcgtc
      301 gatcgcccgc gtcgtgcggt gcaggtctga cgagccgaac agccggatcg cgcggtcgcg
      361 caaatcctcg cgctgcagca gcacgaagat cgcgacgacg agcacgatca atattgtctc
      421 aagcgggccc agaaccggtg tcagcagacg ccgtgcggtc tgccaggggc tctccggggg
      481 ctcgtgcacc tcgaccggga tcggctgcgt cgcgcggcgc gacaggcgcg cattcggtat
      541 cggcgcgggc ggcgcctcga agcggctcgc gacccggctg atctgctcgg gcaggcgggc
      601 gacactcgag cggccgagcg ccttcacctt cttctggatc gtcgtcgcat agtccggcac
      661 gtcgggggcg agcgcggcga gctgctggcc gatgacgagg ccggtcaggc cgatcgcccc
      721 gagcgcgatc agcatcgcga tcacgacgga cggcgtccgc ccgaaacgca accgccgcag
      781 cagcgcgacc aaaggtgcga gcacgaacgc gagcagcacc gccagcacga tcggcaccag
      841 caccgccttg gcgagataaa gcgcgccgat tgtcaccacc gcggcggcaa gcgggacgag
      901 gctcagcgcg cgcggcgacc gcgccgatgg cactgccggg ccgctgctgt tgccggaact
      961 ccgctccacc gatcgccttt cccggttcgt aacgatggca gaacggaagg gcgcgagcgc
     1021 tgttccccgc gcatcgaatg gccctttcgt ccgctcgtca agtgcggcaa caggcggcga
     1081 tgggccaact cgacctgaaa ccaccaagcc gcccaatgcc tgccgccgcc gatctgttcg
     1141 gcgacctgct ggaagtgcag gcgacgcgcc cgccggcgcg cccctggacc cgctttctga
     1201 tctatgcgcc gggcctgggc gtgacggcct tggccgcgct cgcagcggcg tggctcggcg
     1261 atcattatca tgcgccgctg atgctgatgg gtctgctgat cggcctcgcc ttcaatttcc
     1321 tgagcgcgga tgcacggctg catgccggtc tcggctttgc ttccaagaca ctgctgcgct
     1381 ggggcatcgt gctggtcggg ctgcaagtga cggtctggca gatcgcggcg ctcggctggc
     1441 ccagcttcgt cgcgatcggg ctgatgatcc tgatcgtcat gggggtgggc acgctgacgt
     1501 cgcgcgcgct cggcctcggc gctgctttcg gaacgttggc gggcgggtcg gtcgcgatct
     1561 gcggcgcgtc cgccgcgctt gctctgtcga gcgtgctcgg ggaaaagcgc atcaaccagg
     1621 cgcagctcac gctggtgctg gtggcggttt cggcggcgag cgcgcttgcg atgtccacct
     1681 acccgatcct ctcagccgct ctgggcctca gcccgcatgc cgccgggttc ctgctgggcg
     1741 cctcgatcca tgatgtcgcc caggcgttgg gagccggcta ttcgatgggc gaagtgcagg
     1801 gccagaccgc cgcgatcgtg aagctcacgc gagtctcgct gctcgcgccg accctgttgc
     1861 tggtgacgct tgcactgcca aaggacgatg gcgcgaaaac cggcgcgccg ctggtgccct
     1921 ggttcatcgt cacgttcctg gcgctcactg cgttcaactc ggtcgtggcg ctgccggcgc
     1981 cggtcgcgtc gaccgccaag atcggcacga ccgcgctgct gctgctcgcc gtcgtcgcga
     2041 ccggcatccg ttcgccgatg cacttgctcc tgaagcaggg ctggcgcgcc tcgatgccgg
     2101 tggtggccgc cacggtcgtc agcttcctgc tcgcgctcgg agcggcggaa ttgctgtttt
     2161 gatctctccc cctgccgggg aggatcggct acggcgcaga aaaacgggga gcaggatggc
     2221 cggacgttat ttcgaggagt ggaccgtcgg ggaccggctt gagcatgaga tccggcgcac
     2281 ggtgactgtc acggacaatc tgctgatctc gacgctcact cacaatccgc agccgctgca
     2341 tttggacctg gaggccgcgc gcgcgagcga attcggccag atcctcgtca acggcacttt
     2401 cacgttcgcg ctgatggtcg gcgtgtcggt cggcgacacc actctcggca cgctgatcgc
     2461 caatctcggc tatgacaagg tgacgatgcc ggcgcccgtt ttcatcggcg atacgctgcg
     2521 cgccgaaacc gaagtgctgg aattgcgcga gagcctgtcg cgtcccggtg ccgggatcgt
     2581 cacgttcgag cacacgatgt acaaccagcg caatcagctc gtctgccgct gcctgcgcag
     2641 cgcgctggtc aagcggcgtc acccgaagca gaaatgaggc tccgctcgct ccttttcgtc
     2701 cccggcgacc ggccggaccg gatggtgaag gcgctcgccg ctggggcaga cgcgctgatc
     2761 ctcgacctgg aagattccgt cgcccccgcg aacaagcggg ccgcgcggcg cgccattgcc
     2821 gatttcctcg acggcacgga gcggagctgc aagctgttcg tccgcctgaa cccgctcgac
     2881 agcgagttct gcgacgatga tctcgccgag gtgctggaca gccgtcccga cgggctggtg
     2941 ttgcccaagg cggagggcgc tgcgtctgtg cgcaagctcg ccgatcgctc aagcatcccg
     3001 atcctgccga tcgcaagcga aacgcccgcg gccgtattcc ggctcggcga ctatgccgaa
     3061 gtcgcgggcg cgcttgccgg tctcacctgg ggcgcggagg acctgccggc tgcgattggc
     3121 gctgccgcct cgcgggatga gagcggcgcc tatctgccgc cctatcaact ggtccgcgcg
     3181 cttgttctgt tcggcgccgc cgctgccggc gtgagcccga tcgaaaccgt ctatccggac
     3241 atcaaggatc tgacgggact gcaacgtacc gcggagacag cggcgcgcga tggcttcacc
     3301 ggcatgatgg cgatccaccc ggcgcaagtg cccgtcatca acgccgcctt cacgcccgcg
     3361 cctgaagcgg tggagaaggc tcgcgcgatc gtcgccgcct ttgaggccaa tcctgacgct
     3421 ggtgcgctcc aactcgacgg caagatgatc gatgcgcccc atttgaaaca ggcccgccgc
     3481 atcctcgagc gagcggcgct gagttagtgg ctcagcccat cctgcgtaga gcagccagaa
     3541 ccggcgatgc cgcccgtcgc tgctcgtcca acccggccgc gtagcaaagg ccgatcgtgc
     3601 gcctctcgtc gaagccggca agcttcgggc gcacgacatc cggcgcgttg aagctctcgg
     3661 gcatgacggt gatgccgagg ccggcctgaa caagcgccag cgcacggcca tcgtcgaatg
     3721 tgcggagcgc aaaaaagggc cgaacgccgc ggctggtgaa atgccggctc gtggc
//
LOCUS       DASQVK010000205         3849 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_171346,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000205 DASQVK010000000
VERSION     DASQVK010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3849)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3849)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3849
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171346"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            95..1042
                     /locus_tag="VE567_04420"
     CDS             95..1042
                     /locus_tag="VE567_04420"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010217316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HYZ48119.1"
                     /translation="MISYLDFEKPIAELEARVAELRQTAAGGAVDIEAEIGRLQAKAD
                     KLLRDTYARLTPWQKTLVARHPGRPHFKHYVARLIEDFMPLAGDRAFADDQAILGGFG
                     RLNGRRVMVIGHEKGDDTTSRLKHNFGMGKPEGYRKAIRLMRLADRFGLPVVTLVDTS
                     GAFPGVQAEERGQAEAIARSTEQCLALGVPMVAAVVGEGGSGGAIALAAANRVLMFEN
                     AVYSVISPEGCASILWRTADQAPTAAEAMKITAQDLKGLGIIDRIVPEPVGGAHRDPE
                     EAIDLLGQALGQALDELAPLDRDALRADRRAKFLRMGSL"
     gene            complement(1103..1267)
                     /locus_tag="VE567_04425"
     CDS             complement(1103..1267)
                     /locus_tag="VE567_04425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009821172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HYZ48120.1"
                     /translation="MQMLRKIVRNSKGATAIEYGLIAALIAVAAITAMTSLGTKVGNT
                     FNNASASMVQ"
     gene            complement(1435..1605)
                     /locus_tag="VE567_04430"
     CDS             complement(1435..1605)
                     /locus_tag="VE567_04430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006831843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HYZ48121.1"
                     /translation="MSLFVRKLIRSAAGATAVEYGLIVALIVVAAMAAILSVADTTIG
                     MWNGIAENVLAH"
     gene            1670..2092
                     /locus_tag="VE567_04435"
     CDS             1670..2092
                     /locus_tag="VE567_04435"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011542082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(deoxy)nucleoside triphosphate
                     pyrophosphohydrolase"
                     /protein_id="HYZ48122.1"
                     /translation="MPPCDSLLIVVAAALVHSDGLVLVQQRAPHRSMAGLWEFPGGKV
                     ELGETPEQALVRELAEELGIGLAAETLTPAAFASERLGDRHMLLLLYTARAWRGEPQP
                     LDASAIRWVSLDEMRSLAMPPADVPLVEALAGLLRPGS"
     gene            complement(2072..2920)
                     /locus_tag="VE567_04440"
     CDS             complement(2072..2920)
                     /locus_tag="VE567_04440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYZ48123.1"
                     /translation="MSAPEIFDRRRRRLRRDRIAADFAEHDFLHARMADELLDRLASV
                     QRRFTRALDLGCLDGRIGRALRAEGIDTVSADPGFRFARTAGGVQCDEDRLPFADASF
                     DLVVACGGFDQVSDLPGALLLIRRALKPDGLFLGAFPGAGSLPRLRGVLLSAEERAVA
                     RIHPQIDVRSAGDLLARAGFALPVADGERVTVRYSSLFALLADLRGAAATNMLAGAVP
                     PLTRATLARAAERFQAGADPDGKVGETVEIVHLLGWAPSPDQAQPARRGSATTSLADA
                     LRARPQ"
     gene            2843..3724
                     /locus_tag="VE567_04445"
     CDS             2843..3724
                     /locus_tag="VE567_04445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019371243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HYZ48124.1"
                     /translation="MLGKVGGDPVAPQAAAAAIEDFGRAHRVLVQNRAGRNKSAVTLL
                     AAPFRAALDFALPPRCPGCGAIVSADGGFCSSCWSKLDFLSGPACAGCGLPFEIDRGD
                     SLCGACLAEPPPHDGVRAVVAYGDVARALVLKLKHGRRIGMARVIGGHLARAAQGESE
                     ALLVPVPLHRWRVWPRGFNQSALIANDVARRTGLQVRTDLIERRKPTPMLGKLGRAAR
                     ARALRGAFAVPSQMRALLKGRTVLLVDDVYTSGATAGACARVLKRAGAAKVVVLCWAR
                     VLAGQVDDFASLGDGSV"
     gene            3737..>3849
                     /locus_tag="VE567_04450"
     CDS             3737..>3849
                     /locus_tag="VE567_04450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019371242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin domain-containing protein"
                     /protein_id="HYZ48125.1"
                     /translation="MAKVEIYTKFGCPYCYRAKRLLDSKGAAYEEIDITMGG"
BASE COUNT          619 a         1275 c         1322 g          633 t
ORIGIN      
        1 actcatgtgg actcgcgccg gctcgtcgaa ctggtcaacg cccgccaccc gctcgttgac
       61 gagcggcccc gccgctccta acccgcccca ccacatgatc agctaccttg atttcgaaaa
      121 gccgattgcc gaactcgaag cacgcgtggc ggagctgcgc cagacggcgg ccggcggcgc
      181 ggtcgatatc gaggcggaga tcggccggct ccaggccaag gccgacaaat tgctccgcga
      241 tacttatgcg cggctcacgc cctggcagaa gacgctcgtt gcccgccacc cggggcggcc
      301 gcatttcaag cattatgtcg cgcggctgat cgaggacttc atgcccttgg ccggcgaccg
      361 cgcctttgcc gacgatcagg cgatcctggg cggcttcggc cggctgaacg ggcgccgtgt
      421 gatggtgatc ggccacgaaa agggcgacga caccacgagc cgcctcaagc ataatttcgg
      481 aatgggcaaa ccggagggct atcgcaaggc gatccgactc atgcggcttg ccgatcggtt
      541 cggcctgccc gtcgtgacct tggtcgacac ctcaggtgcg tttcccggcg tgcaggcgga
      601 agagcgcggc caggccgaag cgatcgctcg atcgaccgag cagtgcctcg cgctcggcgt
      661 gccgatggtg gcggcagtgg tgggcgaggg cggctcgggc ggcgcgatcg cgctcgcggc
      721 cgccaatcgc gtgctgatgt tcgaaaacgc agtctattcg gtcatctcgc ccgaaggctg
      781 cgcctcgatc ctgtggcgca ccgcggacca ggcgccaact gccgcggagg cgatgaagat
      841 caccgcgcag gacctgaaag gattgggcat catcgatcgc atcgtgcctg agccggtcgg
      901 cggcgcgcac cgcgacccgg aggaagcgat cgacctgctg ggccaggcac tgggccaggc
      961 gctcgacgag ctcgcgccgc tggatcggga cgcgctccgc gccgaccgtc gcgctaaatt
     1021 cctgcggatg gggtctcttt agctctggcg caaaaaaagg ggcggccaat ccggccgccc
     1081 cttcatgtgt gtgaggtgcg agttactgca ccatgctcgc cgaggcgttg ttgaaggtgt
     1141 tgccgacctt cgtacccagc gacgtcatcg cggtaatggc ggcaaccgcg atcaacgcgg
     1201 cgatcaagcc gtattcgatc gcggtggcgc ccttggaatt gcgaacaatc ttgcgcaaca
     1261 tttgcatctt cggtctcctt ggtccagcac tgtcccgtgt tgactcggcc cggcgctcag
     1321 agatcaacga tgcggctgct acctggtttt cgttgtcaaa tgctgaacga cggcgggctc
     1381 gcgggcgtta accatcgacc gtgagcttcg taggtccttc gccggggccg ttgctcaatg
     1441 agcaaggacg ttttcggcaa tgccgttcca catgccgatc gtcgtgtctg ccaccgacag
     1501 gatggcggcc attgcagcga ccacgatcag cgcaacgatg aggccgtatt ccacagcggt
     1561 ggcgccggcg gccgatcgaa tgagcttgcg aacgaaaaga ctgatcacgc ccgcccccgg
     1621 ccggtgcaat aagtcctaga ttgccatcga gaccattaag aaaagcctta tgccaccctg
     1681 tgactcgctc ctgatcgtcg tcgccgccgc gttagtccac agtgacggcc ttgttctcgt
     1741 ccagcagcgc gcgccgcacc gctcgatggc gggactatgg gaattccctg gtggcaaggt
     1801 ggagcttggc gagaccccgg agcaggcatt ggtgcgcgag ctggccgaag agctgggcat
     1861 cggcttggcc gccgaaacgc tgacgcccgc agcttttgca agcgaacggc tcggcgatcg
     1921 gcatatgctg ctgctgctct acactgcgcg ggcttggcgc ggcgaacctc aaccgctcga
     1981 cgccagcgca atccggtggg tctccctgga cgaaatgcgt agccttgcaa tgccccccgc
     2041 cgacgtgccg ttggttgagg ccttggccgg cctattgcgg cctggctcgt agcgcatccg
     2101 cgagcgaggt ggtcgcgctg ccgcgacggg ccggctgggc ctggtcaggg gagggcgccc
     2161 agccgagcag atggacgatc tcgaccgtct cgccgacctt gccgtccgga tcggccccgg
     2221 cctggaaccg ttcggcagcc cgcgccagcg tggcgcgagt gaggggcggg acggcgccgg
     2281 ccagcatatt ggtcgccgcc gcgccgcgca gatcggcaag cagtgcaaag agggagctgt
     2341 accgcaccgt cacgcgctcg ccgtcggcga cggggagcgc gaagccggcg cgcgcgagca
     2401 agtcgcccgc cgagcgcaca tcgatctgcg gatgtatgcg cgccaccgcg cgttcttccg
     2461 cgctcaaaag caccccgcgc agtcgtggca agctgccggc gcccggaaat gcgcccagga
     2521 acagcccgtc cggcttcagc gcgcggcgga tcagcagcag cgcgccggga agatcgctga
     2581 cctggtcgaa cccgccgcag gcgacgacca agtcgaaact ggcatcggca aaggggagcc
     2641 gatcctcgtc gcattgcacg ccgccggcgg tccgggcaaa gcggaagccg ggatcggccg
     2701 aaaccgtgtc gatgccctcc gctcggagcg cgcggccgat gcgcccgtcg agacatccaa
     2761 ggtccagcgc gcgcgtgaat cggcgctgca cgcttgcgag gcgatcgagc agctcgtcgg
     2821 ccatgcgcgc atgcagaaaa tcatgctcgg caaagtcggc ggcgatccgg tcgcgccgca
     2881 agcggcggcg gcggcgatcg aagatttcgg gcgcgctcat cgcgtgcttg tgcagaaccg
     2941 cgcgggcagg aacaagagcg ccgtgacctt gctcgccgcg cccttccgtg ccgctctgga
     3001 tttcgcgctg ccgccccgct gcccgggctg cggtgcaatc gtgtccgcgg atggcggctt
     3061 ttgcagttcc tgctggtcga agctcgactt cctgagcggc cccgcctgcg ccggctgcgg
     3121 cctgccgttc gagatcgatc ggggcgactc gctgtgcggc gcctgcctgg ccgagccgcc
     3181 gccgcacgac ggcgtgcggg ccgtggtggc ctatggcgat gtcgcccgcg cgctggtcct
     3241 caagctcaag cacggccggc gcatcggcat ggcgcgtgtg atcggcggcc atctcgcccg
     3301 ggccgcacag ggcgaaagcg aggcgctgct ggtcccggtg ccgctccacc gctggcgggt
     3361 ttggccgcgt ggtttcaacc agtcggcgct gatcgcgaac gatgtcgctc ggcgcacggg
     3421 cttgcaggtg cgcaccgacc tcatcgagcg ccgcaagccc acgccgatgc tgggcaagct
     3481 cggccgcgcg gcgcgagcgc gggccttgcg cggcgctttc gccgtcccat ctcaaatgag
     3541 agctttgctc aagggccgga ccgtgctgct ggtcgacgat gtctatacca gcggcgcgac
     3601 ggcgggtgct tgcgcccgcg tgcttaagcg cgcgggcgcg gcaaaagtcg tcgtgctgtg
     3661 ctgggcccgc gtgctcgccg ggcaggttga cgatttcgca tccttgggcg acggttcggt
     3721 gtgaggagaa tacttggtgg cgaaggtcga gatctacacc aaattcgggt gcccctattg
     3781 ctaccgcgcc aagcggctgc tcgacagcaa aggcgcggcc tatgaggaga ttgacatcac
     3841 gatgggcgg
//
LOCUS       DASQVK010000206         3323 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_234572,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000206 DASQVK010000000
VERSION     DASQVK010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3323)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3323)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3323
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234572"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..153
                     /locus_tag="VE567_04455"
     CDS             <1..153
                     /locus_tag="VE567_04455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009821172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HYZ48126.1"
                     /translation="RKIMRNSKGATAIEYGLIAALIAVAAITAMTSLGSKVSKTFNNV
                     SASMVQ"
     gene            complement(213..1052)
                     /gene="hemF"
                     /locus_tag="VE567_04460"
     CDS             complement(213..1052)
                     /gene="hemF"
                     /locus_tag="VE567_04460"
                     /EC_number="1.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007407105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004109 - coproporphyrinogen oxidase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-dependent coproporphyrinogen oxidase"
                     /protein_id="HYZ48127.1"
                     /translation="MNLDEQQSAARTWFEALRDRICAAFEEIEREAGSDAHFDYTPWN
                     RIDPDGAPGGGGVRGLMKGQVFEKAGVNVSTVHGRFEGEFAKSIHGAGEDPRFFATGI
                     SLVAHMANPHVPAVHMNTRFLRTTKQWFGGGADLNPPLPRDEDTADFHASLKAACDAH
                     APDYYPRFKNWADDYFFIPHRGVHRGVGGIFYDHLEGDFDATFAFTRDVGEAFLDVFP
                     RIVRRRMHEPWTEADKHAQLVWRGRYAEFNLVYDRGTLFGLKTGGNIDAILMSLPPVA
                     VWE"
     gene            complement(1082..1531)
                     /locus_tag="VE567_04465"
     CDS             complement(1082..1531)
                     /locus_tag="VE567_04465"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010183935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008175 - tRNA methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HYZ48128.1"
                     /translation="MRLALFQPDIPGNVGAVLRTCACFGVGVDLIEPLGFPWSDKKIK
                     RAAMDYFANVQVTRHADWHAFRAATPGRLVLMAARGSVPITEIGFAPDDVILMGSESA
                     GAPPFVHDAAALRVRIPIMAGLRSMNVSVAAGIALHEALRQTGQLPA"
     gene            1712..2290
                     /gene="petA"
                     /locus_tag="VE567_04470"
     CDS             1712..2290
                     /gene="petA"
                     /locus_tag="VE567_04470"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045275 - respiratory chain complex III
                     [Evidence IEA];
                     GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HYZ48129.1"
                     /translation="MATVEHQQREEALAVEQGHRRRDFINIAAVSAAGVGAVAVVLPL
                     INQMNPSADVLALATAEVDISQIQPGQAIKTIYRKQPLFVRHLTPHEIAAADAVPLSE
                     LRDPQTLGQRTKPGKAQWLVTMGVCTHLGCVPLGAGEGENRGPFGGYFCPCHGSAYDT
                     AARIRKGPAPRNLEVPDYVFRSDKVIEVGTAA"
     gene            2287..>3323
                     /locus_tag="VE567_04475"
     CDS             2287..>3323
                     /locus_tag="VE567_04475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010338828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b/b6"
                     /protein_id="HYZ48130.1"
                     /translation="MSFPWAQHYQPKHPFMKYLDERLPLPRLVYNAIGGGYPVPRNLN
                     YFWNFGVLSGLALVIQIVTGIVLAMHYSTDAGTAFQSIERIMRDVNSGWMLRYMHANG
                     ASFFFIVVYIHIFRNLYYGSYKAPREMVWLLGLVIFLLMMATAFMGYVLPWGQMSFWG
                     AKVITGLFGAIPFVGETIQIWLLGGYAPDNAALNRFFSLHYLLPFVIAAVVILKIWAL
                     HIPGSSNPTGVEVKSESDTVPFHPYYTAKDGFGVGVFLLLYVAIVFFAPNYLGHPDNY
                     IEANPLSTPALIVPEWYFWPFYAILRSFTVDFILPAKLWGVIAMFGAIILLFFLPWLD
                     PSPVRSGSYRPR"
BASE COUNT          576 a         1070 c         1062 g          615 t
ORIGIN      
        1 cgcaaaatca tgcgcaattc caagggcgcg accgcgatcg aatacggcct tatcgccgcg
       61 ctgatcgccg tcgccgcgat tacggcgatg acctcgctgg gcagcaaggt cagcaagacc
      121 ttcaacaacg tctcggcgag catggtgcag taagcaccag attcgttcag tagaaacggg
      181 gaagggcggc gaggcgactc gccgcccttt tttcattccc agacggcgac cggcggcagg
      241 ctcatcagga tcgcgtcgat attgccgccg gtcttcaggc cgaacagcgt gccgcggtca
      301 tagaccagat tgaactcggc atagcggccg cgccaaacga gctgagcgtg cttgtctgcc
      361 tccgtccagg gctcgtgcat gcgacggcgg acgattcgcg gaaagacgtc gagaaacgcc
      421 tcccccacgt cgcgcgtgaa agcgaaggtt gcgtcgaaat ccccttcgag gtggtcgtag
      481 aagatgccgc ctacgccccg gtgcacgccg cgatggggga tgaagaaata atcgtcggcc
      541 caatttttga agcgcggata ataatcgggc gcgtgcgcat cgcacgctgc cttgaggctg
      601 gcgtggaaat cggccgtatc ctcgtcgcgg ggaagcggcg ggttcaggtc cgcgccgccc
      661 ccgaaccact gcttcgtcgt tcgcaggaag cgcgtgttca tatgcacggc gggcacgtgc
      721 ggattcgcca tatgcgcgac gaggctgatg ccggtcgcga aaaagcgcgg gtcttcgccg
      781 gcgccgtgga tcgatttggc gaactcccct tcgaaccggc cgtgtacggt cgagacgttg
      841 acgccggcct tttcgaacac ctggcctttc atcagcccgc gcacgccgcc gccgccgggc
      901 gcgccgtccg ggtcgatgcg attccagggg gtataatcga agtgcgcgtc cgatccggcc
      961 tcccgctcga tctcctcgaa agcggcgcag atgcggtcgc gcaaggcctc gaaccaggtg
     1021 cgggcggcgc tttgctgttc gtccaggttc aatccaaact ccgtcggttt cgatgaaggg
     1081 gtcacgccgg gagctgcccc gtctggcgca gcgcctcgtg cagcgcgatg cccgcggcga
     1141 ccgagacgtt catcgaccgc aagccggcca tgatcgggat gcggacgcgc agcgccgcgg
     1201 cgtcatgcac gaacggcggc gcgccggcgc tttcgctgcc catcaggatc acgtcgtcgg
     1261 gcgcgaaccc tatttcggtg atcggcaccg agccgcgcgc ggccatgagc accagccgcc
     1321 cgggcgtcgc tgcccggaac gcgtgccaat cggcgtgccg ggtcacctgc acattcgcga
     1381 aatagtccat cgccgcgcgc tttatcttct tgtccgacca ggggaagccg agcggctcga
     1441 tcaaatcgac gcccacgccg aaacaggcgc aggtcctgag aacggcgccg acatttcctg
     1501 gaatgtccgg ctggaagaga gcgagccgca tcgcgagcta gatgaacgga aacagaatat
     1561 ttgcaaccgc cgcaatcggc gctatcagcg cggccagccg tcccggcgca tgcgggcgcg
     1621 gccgcgcgag ctattgtcgg cgcacgggtg gggaagcctg ccggcagcag gctcgcggcc
     1681 ttttattcgg ggtttcgtac aaaggcagat gatggccaca gtcgagcatc agcagcgcga
     1741 ggaagcgctg gcagtagagc agggtcaccg ccgccgtgac ttcatcaaca tcgccgcggt
     1801 gagcgcggcc ggagtaggcg cggtggcggt cgtgctgccg ctgatcaacc agatgaaccc
     1861 gtcggcggac gtgctggcgc tggccacggc ggaagtcgac atctcgcaaa ttcagccagg
     1921 ccaggcaatc aagacgatct accgcaagca gccgctgttc gtgcggcacc tgacgccgca
     1981 cgagatcgcg gcagccgacg ccgtgccgct gagcgagctg cgcgacccgc agactctggg
     2041 ccagcgcacc aagcccggca aagcgcaatg gctggtcacg atgggcgtgt gcacgcatct
     2101 gggctgcgta ccgctgggcg cgggcgaagg cgagaatcgc gggccgttcg gcggctattt
     2161 ctgcccgtgt cacggttccg cctacgacac cgccgcacgc atccgcaaag gcccggcgcc
     2221 aaggaatctc gaagtgccgg actatgtgtt ccggtcggat aaagtcatcg aagtggggac
     2281 cgcggcatga gctttccctg ggcgcagcat tatcaaccca agcacccgtt catgaaatat
     2341 ctggacgagc ggctgccttt gccgcggctc gtctataacg cgatcggcgg cggctacccc
     2401 gtcccgcgca acctcaatta cttctggaat ttcggcgtcc tgtcagggct cgcgctggtg
     2461 atccagatcg tcaccggcat cgtgctggcg atgcattatt cgaccgacgc gggcaccgcc
     2521 ttccagtcga tcgagcgcat tatgcgcgat gtgaattcgg gctggatgct gcgctacatg
     2581 catgcgaacg gcgccagctt cttcttcatc gtggtgtaca tccacatctt ccggaacctc
     2641 tattacggct cctacaaggc gccgcgcgag atggtgtggc tgctgggcct cgtcattttc
     2701 ctgctgatga tggcgaccgc cttcatgggc tatgtgctcc cctgggggca gatgagcttc
     2761 tggggcgcga aggtgattac cggcctgttc ggcgcgatcc cctttgtcgg cgagacgatc
     2821 cagatctggc tgctcggcgg ctatgcgccg gacaatgccg cgctcaaccg cttcttctcg
     2881 ctccactatc tgctgccctt cgtgatcgcg gcggtagtga tcctgaagat ctgggcgctg
     2941 cacatccctg gctcctcgaa cccgaccggt gtcgaagtga agtcggaatc ggacacggtg
     3001 ccgttccacc cctattacac cgccaaggac ggcttcgggg tcggcgtgtt cctgctgctc
     3061 tatgtggcga tcgtgttctt cgcgcccaat tatctgggcc acccggacaa ctatatcgag
     3121 gcgaatccgc tctcgacgcc cgcgctgatc gtgcccgaat ggtatttctg gcccttctac
     3181 gcgatcctgc gttcgttcac ggtcgatttc atcctgccag cgaagctgtg gggcgtgatc
     3241 gccatgttcg gcgcgatcat cctgctcttc ttcctgccgt ggctggatcc ttcgccggtg
     3301 cgctcgggca gctatcgccc gcg
//
LOCUS       DASQVK010000207         4840 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_426373,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000207 DASQVK010000000
VERSION     DASQVK010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4840
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_426373"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..455)
                     /locus_tag="VE567_04480"
     CDS             complement(<1..455)
                     /locus_tag="VE567_04480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48131.1"
                     /translation="MRQIGIRAAVTTAYDSNAFGVSDALLARGAIPGRSKDDIHITPS
                     LLVDVVMPFGLQSAFLRGQVGYDFYMNNSRLNRERIGLDGGANLRVIGACTVSPAVSY
                     ARHRSNAGDIFSVSPVPLVDQTNTEERISFGGSVGCAGAVGLSPTVSYR"
     gene            866..1132
                     /locus_tag="VE567_04485"
     CDS             866..1132
                     /locus_tag="VE567_04485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010542644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48132.1"
                     /translation="MQTIYDWVTVAIFAGLIVIFLQRSVGEGEPQDSILSYLPPAIGC
                     AVANQVGNAAVREGDTIYHVIAAVGIAAVLAYTYYVIKPFQRRS"
     gene            1178..2578
                     /locus_tag="VE567_04490"
     CDS             1178..2578
                     /locus_tag="VE567_04490"
                     /inference="COORDINATES: protein motif:HMM:NF044287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYZ48133.1"
                     /translation="MSFFKKIIGWFHRKRRADAPARPDREALLERRRARQAALEAVHH
                     DERTATPSGYPGFRSSAVERGLSRGETSRLMKARMTLRDVFTPAQPVTERSKFAGRLA
                     VLARLIEVLEEQRSHVVIYGERGIGKTSLVHILADIARESRYLVIYASCGAFSSFQDI
                     FRAVLRDIPQLYLRDVDPALLTDNQGTLADRLPENFDARQLGELLAQVTGTRVIIILD
                     EYDRAESDQFRLSVAELIKNLSDRAARAQLVLAGVASNLQHLIGHIPSIRRNIIGLPM
                     PRLSSEEVRALIRIGEKSAGVAFDEDAVQAIETVANGSPYLVRLVSHHASMIALDAER
                     LRIEFGDVSAALDKVVDEAASRIDPRLIAAVDPFLEGPGRPLIHAAARAASTPDGWFA
                     PEDASSLIENCPAERMLKELNELTLAGVLERGSEGETPRYRFREEPLPTYLWMRIARD
                     AANAQSVNATSRSVAS"
     gene            complement(2547..3533)
                     /locus_tag="VE567_04495"
     CDS             complement(2547..3533)
                     /locus_tag="VE567_04495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010542641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYZ48134.1"
                     /translation="MAASGGGHVRQLLDLEPVWAPHDYFFVTEDTALGRSLAAKHPVR
                     FVTHYALGQARLGNTAAMLKGAARNLAQSARIVGRERPDVVITTGAGAVYWTAMSARA
                     LGAKVVLIDSFARFDAPSKFARGLKPFATETIVQSAALKQHWPDAMLFDPFRILYSTP
                     PPKQPLLFATVGATLGFPRLVDTVLKLKASGRLPERVILQVGDVDLPQNLPEGVEVRT
                     AIPFDEVQAILRDAMFVVCHGGTGSLITALRAGCRTVAMPRRFSLGEHYDDHQEEITA
                     AFAARGLVEVALETDDLGDCIERVRARPPVMATTDPQALIDYLKTRLNDWLR"
     gene            3689..4573
                     /locus_tag="VE567_04500"
     CDS             3689..4573
                     /locus_tag="VE567_04500"
                     /inference="COORDINATES: protein motif:HMM:NF025009.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HYZ48135.1"
                     /translation="MAKKISAALMLGTALLLAGCGKKGAGELEKGQVVATVNGQDVTV
                     HELNAEIQGAQIPPNINTAQKKQLEQAALQQVVNRRILADVARERGLDKTPMFLIQQK
                     RAEEQILVQMLQRQMSAAVKQPSQTEVATFIAQNPDLFAERKIFTVDQVQFEAPKDPT
                     VLRKYQPLKTMDEVEATLKQDGLQFKRAPATLDVATANPELVQQVLKMPKDEIFIIPA
                     GRVMVANRIVDTKIQPLTGQEATQLATAMLQQQKFQELIKRDLEPKLKKAQAEVKYQA
                     GFAPPKGAGQAPGAAAAK"
     gene            complement(4604..>4840)
                     /locus_tag="VE567_04505"
     CDS             complement(4604..>4840)
                     /locus_tag="VE567_04505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48136.1"
                     /translation="QRIIMMRGAGGPKGWAKAALWMGVGAVQYGLHGGKAAALRLAGR
                     PTWRTQAARASGGLGKLMWWKLWEQTPYAGGSAQ"
BASE COUNT          921 a         1546 c         1543 g          830 t
ORIGIN      
        1 tggcggtagc tcacagtcgg cgaaagcccg accgcgccgg cgcagcccac gctgccgccg
       61 aaggaaatcc gctcctcggt attggtctgg tcgaccagcg gcacggggga caccgagaaa
      121 atatcaccgg cattggagcg atgacgggcg tagctgaccg caggagagac agtgcaagcg
      181 ccgatcacgc gcagattggc accgccatca aggccgatcc gctcccggtt cagcctcgag
      241 ttgttcatat agaagtcgta gccgacctgt ccgcgcagaa aagccgattg aaggccgaac
      301 ggcatgacga cgtcaacgag cagggacggc gtgatatgga tgtcgtcctt tgaacggccc
      361 gggatggcgc cccgcgccag caaagcgtcg ctgacgccaa acgcattgct gtcgtaggct
      421 gtcgtgaccg cagcgcggat gccgatctgg cgcacgggtg cggcgttgcg attgatgcgc
      481 ggggccgccc cgaagctcgg cggcaccgtg gaggtggttt gggcgaaagc gatctccgcc
      541 gaagagagga ggagcaaacc cagccaggcc ttattcttca acccgttttt ccttcccgtc
      601 cgttattctc gggcggtcgc ccccttctcg gctatcccga ccccgtccgc ctcgcaattg
      661 gctgttcctg ttttttccgc ggattgccaa tatgtgtggc gattcggaga cactggttag
      721 ctgcgcgttg accggcttat aacacccaaa cgcaatcgca ggcataggtg tccggccaca
      781 ttcaccacga ttcgtaaaaa ccggaacttt gtcttgcgcg actttcaatg ttagcggggg
      841 cactgcgctc taacgagaag gtggcatgca gacgatttac gactgggtga cggtcgcgat
      901 tttcgcgggt ctgatcgtga ttttcctgca gcgctcggtg ggcgagggcg agccgcagga
      961 ttccatcctc agctatttgc cgcccgcgat cggctgcgcc gtcgccaatc aggttggaaa
     1021 tgcggccgta cgagagggcg acacgatcta ccacgtgatc gcggcggtgg gcatcgccgc
     1081 ggtgctcgcc tacacatatt atgtcatcaa gccatttcag cgacgcagct aaagccgcgg
     1141 aacaagctgc cgtccatcaa tgccgaggga atccgacgtg agttttttta agaagatcat
     1201 cgggtggttc caccggaagc gtcgggctga cgcgccggcg cgtcccgacc gcgaggcgtt
     1261 gctggagcgg cgccgcgcgc gccaggcggc gctggaggcg gtgcatcatg acgagcggac
     1321 tgccacgccc tccggctatc caggcttccg ctcgtcggcg gtcgagcggg ggctctcgcg
     1381 tggcgagaca tcgcggctga tgaaagcgcg catgacgctg cgcgatgtgt tcacccctgc
     1441 ccagccggtc accgaacgca gcaaattcgc cggccgcctg gccgtgctcg cgcgcctgat
     1501 cgaggtgctc gaggagcagc gcagccatgt cgtgatctac ggcgagcgcg gcatcggcaa
     1561 gacgtcgctc gtgcatattc tcgcggacat cgcgcgcgaa tcccgctatc tcgtgatcta
     1621 cgcctcgtgc ggggctttct cgagtttcca ggatattttt cgcgcggtgc tgcgcgacat
     1681 tccgcagctc tatctgcgcg atgtcgatcc cgccttgctc accgacaacc aaggcacgct
     1741 cgcggaccgg ctgcccgaga acttcgacgc gcggcagctg ggcgagctgc tcgcccaggt
     1801 gaccggcaca cgcgtcatta tcatcctcga cgaatatgat cgcgccgaaa gcgaccaatt
     1861 ccgtttgagc gtcgcagagc tgatcaagaa tctgtcggat cgcgccgcgc gcgcgcaact
     1921 ggtgctggcc ggtgtcgcgt ccaacctgca gcatcttatc gggcacattc cctcgatccg
     1981 gcgtaatatc atcggcctgc cgatgccgcg cttgtcgagc gaggaagtgc gcgcgctcat
     2041 ccggattggg gaaaagagcg cgggcgtcgc gttcgacgag gatgcggtgc aggcaatcga
     2101 gacagtggcg aacggttcgc cctatctggt ccggttggtg agccaccacg cctcgatgat
     2161 cgcgctggat gccgagcggc tccgcataga gttcggcgac gtctccgccg cgctcgacaa
     2221 ggtggtggac gaagccgcca gccggatcga tccgcggctg atcgcggccg tggatccgtt
     2281 cctagaaggc ccgggccggc cgcttatcca cgccgcggcc cgcgcggcga gcacgccgga
     2341 cggctggttt gcgcctgagg atgcgagctc gcttatcgag aactgcccgg ccgagcgcat
     2401 gctcaaggaa ctcaatgagc tcaccctggc aggcgtgctc gaacgcggga gcgaaggcga
     2461 gacgccccgc tatcgcttcc gcgaagaacc gctgcccaca tatttatgga tgcgtatcgc
     2521 ccgcgacgcg gcgaacgcgc aaagcgtcaa cgcaaccagt cgttcagtcg cgtcttgaga
     2581 tagtcgatca gcgcttgcgg gtcggtcgtc gccatgactg gcggcctggc ccgcacacgt
     2641 tcgatacagt cgccgagatc gtcggtttcc aacgccacct cgaccaggcc gcgggcggca
     2701 aatgcggcgg tgatttcctc ctggtgatcg tcataatgct cgccgagcga gaagcgccgg
     2761 ggcatcgcga cggttcggca tccggcgcgc agagcggtaa tcagcgagcc ggtgccgccg
     2821 tgacagacaa cgaacatggc gtcccgcaaa attgcctgca cctcgtcgaa gggaattgcc
     2881 gtgcgcacct ccacgccctc cggcaggttc tgcggcagat ccacatcgcc gacctgcaga
     2941 atcacgcgtt cgggcagcct gccgcttgcc ttcagtttga gcacggtgtc gacaaggcgc
     3001 gggaagccga gcgtcgcacc cacggtggcg aacagcagcg gctgcttggg cggcggcgta
     3061 ctatagagaa tccggaacgg gtcgaacagc atcgcgtccg gccaatgctg tttgagcgcg
     3121 gccgattgga cgatcgtctc ggtcgcgaac ggcttcagcc cccgcgcgaa tttggagggt
     3181 gcgtcgaaac gcgcgaagga atcgatcaat acgaccttcg cgcccagcgc ccgcgcgctc
     3241 atcgccgtcc aatagacggc gccggcgccg gtggtaatga ccacatcggg gcgctcgcgc
     3301 ccgacaatcc gcgcggactg ggcgagattg cgcgccgcgc ctttcagcat cgcagcggta
     3361 ttgcccagcc gcgcctggcc gagggcataa tgagtgacga aacggaccgg atgctttgcc
     3421 gccagactac gtccgagcgc cgtatcttcc gtcacaaaga aataatcgtg gggcgcccag
     3481 accggctcca ggtcgagaag ttggcggaca tgcccgcctc ccgacgccgc caaacacaat
     3541 ttcagtcgct tgcgtgccac aatgcctcca aaagctcgac tatcggttgc ccttaacgac
     3601 attttcggtt ccgcgcgccc gtttgcctgc taatagctca ggggcaaaaa caagcggcgt
     3661 ccgcccggcg ccgtgtgggg agttagctat ggccaagaag atttcggcgg cgttgatgct
     3721 gggcactgcg ctgctgctcg ccggttgcgg aaaaaaaggc gcaggcgagt tggagaaggg
     3781 gcaagtcgtc gcgacggtca atggccagga cgtgacggtt cacgagctga atgctgaaat
     3841 ccagggcgcg cagattccgc ccaacatcaa caccgcgcag aaaaagcagc tcgaacaggc
     3901 ggcgctgcag caagtcgtga accgccggat cctcgccgat gttgcgcggg agcggggact
     3961 cgacaagacg ccgatgttcc tgatccagca aaagcgggcc gaggagcaga tcctggtcca
     4021 gatgctgcag cggcagatga gcgctgccgt caagcagccg agccagacgg aggtcgccac
     4081 cttcattgcg cagaaccccg atctgttcgc ggagcgcaag atcttcactg tcgaccaggt
     4141 tcagttcgaa gcgcccaagg atccaaccgt tttgcgcaaa tatcagccgc tcaagaccat
     4201 ggatgaggtc gaggcaacgc tgaagcagga cgggctgcaa ttcaagcggg cgcccgccac
     4261 gctcgacgtt gccaccgcca atccggaact cgtccagcag gtgctgaaga tgccgaagga
     4321 cgaaattttc attatcccgg ccgggcgggt gatggtcgcc aacaggatcg tcgacaccaa
     4381 gattcagccg ctgaccgggc aggaggcgac gcaacttgcc actgccatgc tgcagcagca
     4441 gaaattccag gagctgatca agcgcgacct ggagcccaaa ttgaagaagg cgcaggctga
     4501 agtgaaatac caggccggct ttgcgccgcc caaaggggca ggtcaggcgc cgggcgccgc
     4561 ggcagccaaa taactcgaag gggcagctgc ggctgcccct ttcctattgg gccgatcctc
     4621 ccgcataagg cgtctgttcc caaagcttcc accacatcag cttgccgagg ccgccgctcg
     4681 cgcgcgccgc ttgggtgcgc caggtcgggc ggccggccag ccggagcgcc gcggccttgc
     4741 ccccgtgcag cccatattgc accgccccca cgcccatcca taacgcggcc ttggcccagc
     4801 ccttagggcc gcccgcgccc cgcatcatga tgatccgctg
//
LOCUS       DASQVK010000208         2017 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_266766,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000208 DASQVK010000000
VERSION     DASQVK010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2017
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266766"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..592)
                     /locus_tag="VE567_04510"
     CDS             complement(<1..592)
                     /locus_tag="VE567_04510"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019514894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA adenine dimethyltransferase family protein"
                     /protein_id="HYZ48137.1"
                     /translation="MSAIDDLPPLRDIIREHSLSARKSLGQNFLLDLNLTARIARAAG
                     PLEDTTVIEIGPGPGGLTRALLALGARRVIAVERDERALAALDYIAKRYHDRLEIIHA
                     DAQRFDPRPLLEGGKAKIVANLPYNIATPLLVDWLSIEPWPPWYDMMVLMFQREVAER
                     IVAHENEEAYGRLAVLANWRAETKLLFDISPSAFVPQ"
     gene            complement(593..1594)
                     /gene="pdxA"
                     /locus_tag="VE567_04515"
     CDS             complement(593..1594)
                     /gene="pdxA"
                     /locus_tag="VE567_04515"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008070296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050570 - 4-hydroxythreonine-4-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HYZ48138.1"
                     /translation="MAKPLALTIGEPAGIGPDIALAAWLRRDEENLPSFYLLGDRALL
                     AARAKRLGLKVELVDARPEQATGLFARALPVVATGKPATAEPGRPDETSAEAALSSIR
                     LAVSDVTAGKAGAIVTNPIAKNVLYRSGFRHPGHTEFLAELAANGGRPPQPVMMLWSP
                     ALAVVPVTVHLALREAFALLSSELIVSTARIVVHDLKARFGVAQPRLVVSGLNPHAGE
                     DGSLGTEDLKIVAPAVEALRAEGIAVRGPLPADTMFHEAARNTYDCAICMYHDQALIP
                     IKTIAFEDAVNVTLGLPFIRTSPDHGTAFDIAGTGKANPSSLIAALRLAARMAATRP"
     gene            complement(1594..>2017)
                     /locus_tag="VE567_04520"
     CDS             complement(1594..>2017)
                     /locus_tag="VE567_04520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48139.1"
                     /translation="FEYRMQPIVLIVPRGSAPSAIEVRKKEAEVLRERVQSCEEANSY
                     FKSMQNAAIREIVVKTSADIPQVLRELLDKTPIGHLTPPEITKQGVEMVALCGRKATT
                     IDSPKKREIRDKMYAQKYEAKSKAYLQEVRKAAMIEYR"
BASE COUNT          328 a          642 c          700 g          347 t
ORIGIN      
        1 gctgcggcac aaaggcggac ggcgagatgt cgaacagcag tttggtctcg gcgcgccagt
       61 tggcgagcac cgcgagccgg ccgtaggcct cctcgttctc atgggcgacg atccgctcgg
      121 cgacctcgcg ctgaaacatc aacaccatca tgtcgtacca gggcggccac ggctcgatcg
      181 acagccagtc gaccagaagc ggggtcgcga tattgtaggg caggttggcg acgatcttcg
      241 ccttgccgcc ctcgagcagg gggcgcggat cgaagcgctg cgcgtcggca tggatgatct
      301 cgagcctgtc gtgatagcgc ttcgcgatgt agtcgagcgc ggccaatgcg cgctcgtcgc
      361 gctcgaccgc gatcacgcgc cgcgcgccga gcgcgagcag cgcccgtgtc agcccgcccg
      421 gaccggggcc gatctcgatc acggtcgtat cctcgagcgg gcccgccgcg cgcgcgatcc
      481 gcgcggtgag attgagatcg agcagaaaat tctggccaag cgatttgcgc gccgacaagg
      541 agtgttcgcg aatgatgtcg cggagcggcg gcagatcgtc gatcgcgctc attcaaggcc
      601 gggtcgcggc catccgtgcc gcgagccgca aggcggcgat caggctcgac ggattggcct
      661 tgccggtgcc ggcaatgtcg aaggcggtgc catggtccgg cgaagtgcgg ataaacggca
      721 atcccagcgt cacgttgacg gcgtcctcga acgcgatggt cttgatcggg atcagcgcct
      781 ggtcgtgata catgcagatc gcgcagtcgt aggtgttgcg cgccgcttcg tggaacatgg
      841 tgtccgccgg cagcggcccc cggaccgcga tgccctcagc gcgcaaggcc tcgacggccg
      901 gagcgacgat ttttaaatct tcagtgccga gcgagccgtc ttcgccggca tgcgggttga
      961 ggccggagac gacgaggcgc ggctgggcga cgccgaaacg ggccttcagg tcatggacca
     1021 cgatgcgggc ggtcgagacg atcaattcgc tcgacagcag tgcgaacgct tcgcgcagcg
     1081 ccagatggac cgtcaccggc acgacggcca gcgccggcga ccacagcatc atcaccggct
     1141 gcggcggccg cccgccattg gcggccagct cggcgagaaa ttcggtgtgg ccgggatggc
     1201 ggaagcctga gcggtacagc acgttcttgg cgatcggatt ggtgacgatg gcgccggcct
     1261 tgccggcggt gacatcgctg accgcgaggc ggatggagga cagcgccgcc tccgcgctgg
     1321 tctcgtcggg tcgacccggc tcagccgtcg ccggcttgcc ggtcgcaacc acgggcaggg
     1381 cgcgggcgaa aagccctgtg gcctgttcgg ggcgggcgtc aacgagctcg accttcaggc
     1441 caagccgctt ggcgcgagcg gccagaagag cgcgatcgcc gagcagatag aaagacggca
     1501 ggttttcctc atcgcgccgc agccatgccg caagcgcgat atcagggccg atgcccgcgg
     1561 gctcgccgat ggtcagcgcg aggggttttg ccatcagcga tattcgatca tggcggcttt
     1621 gcggacttcc tgcagatagg ctttcgactt cgcctcgtac ttctgggcgt acatcttgtc
     1681 gcggatctcc cgcttcttcg gggaatcgat ggtggtcgct ttcctgccgc acagcgccac
     1741 catttccacg ccctgcttgg tgatctcggg cggcgtcagg tggccgatcg gcgtcttgtc
     1801 caggagttcg cgcagcacct gcggaatgtc ggccgaagtc ttgacgacga tctcgcggat
     1861 cgcggcgttc tgcatcgact tgaagtagga gttggcttcc tcgcagctct gcacgcgctc
     1921 gcgcagaact tcggcttcct ttttccgcac ttcgatcgcg ctcggcgccg agccgcgcgg
     1981 cacgatcagg acgatgggct gcatccggta ctcgaac
//
LOCUS       DASQVK010000209         2567 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_361387,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000209 DASQVK010000000
VERSION     DASQVK010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2567
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_361387"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            329..808
                     /locus_tag="VE567_04525"
     CDS             329..808
                     /locus_tag="VE567_04525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48140.1"
                     /translation="MLFHLSIEADDAQRTAEVLAEIWGGVALPFPPVGVGSWMAFHGA
                     DNGTMIEVYPRGTTLTETESDAVGVMADNRRHTATHFAMSTDLPAERIYAIATREGWS
                     AKTCRRGGKFGVIEIWIDGCQMIEVLTPEMQREYLDFVTVSNWAKMLEVGAPQPLAA"
     gene            complement(879..1253)
                     /locus_tag="VE567_04530"
     CDS             complement(879..1253)
                     /locus_tag="VE567_04530"
                     /EC_number="1.14.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010405236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HYZ48141.1"
                     /translation="MIAVIFEGWADEGQGEAYLDLAAMLRPLVEEAPGFISVERFRSV
                     SDPAKLLSLSFWEDEAAVAAWRNTAEHRAAQVRGRAGVFRNYRLRIAAVTRGYGKDDR
                     KGAPEDSRAVLAAAEAMTVPPV"
     gene            complement(1250..1579)
                     /locus_tag="VE567_04535"
     CDS             complement(1250..1579)
                     /locus_tag="VE567_04535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010405235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NIPSNAP family protein"
                     /protein_id="HYZ48142.1"
                     /translation="MIACFIRYELDPFRIDAFEHYARTWGQAIPECGANLIGYFAPHE
                     GSATGAYGVYTVDSLAAYEAYRARLKEHPLGRENFEFAKTERFIRREDRLFLRLASAP
                     HAAVVGP"
     gene            1677..2354
                     /locus_tag="VE567_04540"
     CDS             1677..2354
                     /locus_tag="VE567_04540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010405233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HYZ48143.1"
                     /translation="MVTVARLAETAALIGDPARTAMLFALMDGRAYTAGELANFAGVA
                     PPTASGHLAQLVEAGMLAVERQGRHRYFRIAAPEIGAILEGLTVVTAHREGRAPAPGP
                     RDPALRRARICYDHLAGELGVALYGALVERGYLRLSPDGAALTDSGAALLDALGVQLA
                     PSRRPACRPCLDWSERRPHLAGQAGAAICAAALDRAWVRRREGCRTLDVLPAGSRVFA
                     ESFGLRF"
     gene            complement(2351..>2567)
                     /locus_tag="VE567_04545"
     CDS             complement(2351..>2567)
                     /locus_tag="VE567_04545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="D-aminoacylase"
                     /protein_id="HYZ48144.1"
                     /translation="ERGALKPGYFADLAIFDPKTIVDRATYARPQVYATGMRHVFVNG
                     VQVLKDGEHTGATPGRAVWGPGKGRCH"
BASE COUNT          390 a          913 c          846 g          418 t
ORIGIN      
        1 cgggccgcca gcgtccgagc ccgagcctgc tcacgagccc gccgaggctg cgaacgacca
       61 gccgccgcgc aagggctggt ggcagcgcac gatcaccggg cggttctgat cccaacctcc
      121 gttcgtcccg actagaggac gaacggagag tttgtcagca tgtgcggggc gttttcgtcg
      181 cgcccggcgt catctccgcc gcggcttggc gtgtccgccg agccgcacga cggcttcgtc
      241 gaccggctga tttcttcgcc tgtttctggt gtcacagcac ggctcgcggc cccgccctgg
      301 aagcgccgca gatcagcggg agacgagcat gttgtttcat ttgtctatcg aagccgatga
      361 cgctcagcgc actgccgagg tactggcgga gatctggggt ggcgtcgccc tgccctttcc
      421 gccagtcggc gtcggctcat ggatggcgtt ccacggcgcc gataatggca cgatgattga
      481 ggtctatccg cgcggcacga cgctgaccga gaccgaatcc gacgcggtcg gcgtgatggc
      541 cgacaatcgg cgccacaccg ccactcactt cgcgatgtcg accgacctgc cggccgagcg
      601 catctacgcc atcgccacgc gcgaaggctg gagcgccaag acctgccggc gcggcggcaa
      661 attcggcgtg atcgagatct ggatcgacgg ctgccagatg atcgaggtgc tcacgcccga
      721 gatgcagcgc gaatacctcg atttcgtgac cgtctccaac tgggccaaaa tgctggaggt
      781 cggcgcgccg caaccgctcg ccgcgtgatc ctcgcaggcg gtcccaaact gcgatgcgga
      841 gcggcgcacg tcgcttgaag gctaccgcgc acctaccctc aaacgggagg gaccgtcatg
      901 gcttcagccg ccgcaagcac ggcgcgactg tcctctggcg ctcccttccg gtcatctttg
      961 ccgtagccgc gcgtcacagc cgcgatccgc agccggtaat tcctgaagac gcctgcccgg
     1021 cctcgcacct gcgccgcccg gtgctcggcg gtgttgcgcc acgccgccac cgccgcttca
     1081 tcttcccaga acgacagcga cagcagcttg gccggatcgg agacactgcg aaaccgctcg
     1141 acggaaatga atccgggcgc ttcctcgacc aagggccgga gcatcgctgc aaggtcgaga
     1201 taggcctcgc cctggccctc gtccgcccag ccctcgaaga tcaccgcgat catggcccca
     1261 ccacggccgc gtgcggcgcc gaggcgagcc gcaggaacag ccggtcttcg cggcggatga
     1321 accgctccgt cttcgcgaac tcgaaattct cccgcccgag cggatgctcc ttcaaccgcg
     1381 cgcgataggc ttcataggcg gcaaggctgt cgaccgtgta cacgccatag gcgcctgtcg
     1441 ccgacccttc gtgcggggcg aaatagccga tgaggttggc gccgcattcg gggatggcct
     1501 gcccccaggt ccgggcataa tgttcgaacg cgtcgatcct gaacggatcc agctcgtagc
     1561 gaatgaaaca tgcgatcatc ggctcctcct tcggcgcgat cgatagtcgc tttgggtccg
     1621 gcgatggttc ggccctgtcc gaagcattgg cggcggcgct gtgctaggcg gcgccgatgg
     1681 tgactgtggc ccgactggcg gaaacggcgg cgctgatcgg cgatcccgcg cgcacggcga
     1741 tgctcttcgc gctgatggac ggccgcgcct atacggcggg cgagctggcg aacttcgccg
     1801 gcgtcgcgcc gcccactgcc agcgggcatc tcgcgcagtt ggtcgaggcg ggcatgctcg
     1861 cggtcgaacg ccaaggccga catcgctatt tccggatcgc cgcgcccgag atcggcgcga
     1921 ttctcgaagg actgacggtc gtgacggcgc accgggaggg ccgggcgccg gcacccggcc
     1981 cgcgcgatcc cgcgctccgc cgcgcacgca tctgctacga tcacctggcc ggcgagctgg
     2041 gcgtggcgct ttacggcgca cttgtggagc ggggctatct ccgcctttcg cccgatggcg
     2101 ccgcgctcac cgacagtggc gccgccctgc tcgacgcgct tggcgtccag ctcgcgccct
     2161 cgcgccgacc cgcctgccgc ccctgcctcg actggagcga gcgccgcccg cacctcgccg
     2221 gccaggccgg cgcggcgatc tgcgccgcag cgctcgaccg cgcctgggtc cgacgccgcg
     2281 aaggctgccg cacgctggac gtgctgccgg ccggatcgcg ggtctttgcc gagagcttcg
     2341 gcttgcggtt ttaatggcaa cgtcccttgc ccggacccca gaccgcccgg cccggcgtgg
     2401 cgccggtatg ctcgccgtct ttcaacacct gcacgccatt cacgaacaca tggcgcatgc
     2461 cggtcgcata gacttgcggg cgggcatagg tggcgcggtc aacgatcgtc ttcgggtcga
     2521 aaatggcgag atctgcgaaa tagccgggct tgagcgcgcc tcgctcc
//
LOCUS       DASQVK010000210         2045 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_234784,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000210 DASQVK010000000
VERSION     DASQVK010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2045
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234784"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..382
                     /locus_tag="VE567_04550"
     CDS             <1..382
                     /locus_tag="VE567_04550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYZ48145.1"
                     /translation="TVGCRMAGVAPVPGLADFRRLFALALAGIEGEGWADALAIGAAL
                     PEEMLAPFLALARAAREAAPCPQDAELARIYGTASLGRVKRLLGYMEERGVIVVRTDL
                     AGGRSIALPHLGWTTAVTEAGRAA"
     gene            complement(379..606)
                     /locus_tag="VE567_04555"
     CDS             complement(379..606)
                     /locus_tag="VE567_04555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48146.1"
                     /translation="MTAADLHDLFLATLARRFGGDRRRWRIVIGKVKLYSSETHSHCN
                     WAVNPMGSANENAAVEQVADELRARHPIVSS"
     gene            complement(711..995)
                     /locus_tag="VE567_04560"
     CDS             complement(711..995)
                     /locus_tag="VE567_04560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48147.1"
                     /translation="MEWRGAMELDALVHHYFGTADLAELSPEAAAHGREALAVDFGVE
                     QEPGRKFALWVLMDALGIAPLPAAAFPKHPELRQAADHYLTASERLLPDH"
     gene            1043..>2045
                     /locus_tag="VE567_04565"
     CDS             1043..>2045
                     /locus_tag="VE567_04565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HYZ48148.1"
                     /translation="MDSRPTNRPDRRTFAIISHPDAGKTTLTEKLLLFGGAIHAAGEV
                     KARGQARRARSDWMKIEQQRGISVTSSVMTFEREGLTFNLLDTPGHEDFSEDTYRTLT
                     AVDSAVMVIDAARGIEAQTRKLFEVCRLRSVPIITFVNKVDREGRHPFDLLDEIAADL
                     ALDVSPMNWPIGMGGIFEGLYDLERKSLMRPDGTNVPANDLAGLISPQAQETVGEELG
                     LIDAGYAAFDEVAYRHGDLTPVYFGSALREYGVAELIDALARFAPSPRPQPAEPEAVS
                     PDDPAVTGFIFKVQANMNPMHRDRVAFMRLCSGKFRRGMKLNQVGTGKSIAVHSPILF
                     "
BASE COUNT          328 a          703 c          683 g          331 t
ORIGIN      
        1 caccgtgggc tgccgcatgg ccggggtcgc gccggtaccg gggctcgccg atttccgccg
       61 gctgttcgcg ctggcgctgg ccgggatcga gggcgagggc tgggccgacg ctctcgcgat
      121 cggtgcggca ttgcccgaag aaatgctggc cccgttcctg gcgctggccc gcgcggcgcg
      181 ggaggccgcg ccttgcccgc aggacgccga gcttgcgcgc atctatggca ctgcctcact
      241 cggccgggtg aagcgcctgc tcggctatat ggaagagcgc ggcgtgatcg tcgtccgcac
      301 cgatctggcg ggcggacgct cgatcgcgct gccgcatctg ggctggacca ctgccgtaac
      361 ggaggccgga cgtgccgcct agctgctcac gatcggatgc cgcgcccgca gctcgtccgc
      421 gacttgctcc acggcggcgt tctcgttcgc gctccccatg gggttcacgg cccaattgca
      481 gtgcgaatgg gtttcgctgg aataaagctt caccttgccg atcacgatcc gccaccgccg
      541 gcggtcgccc ccgaagcggc gggcgagcgt ggcgaggaaa aggtcgtgca gatcggcagc
      601 ggtcatgggg cggcccccta gcagccacag gccgcaagga tagagtggaa agcatcgcgg
      661 atcagccgct tggcgtcgcg gccgcggcgc ctgcgctcgg catgacctgc tcaatggtcg
      721 ggcagcaacc gttcggaagc ggtcagataa tggtccgccg cttgccgcag ctccggatgc
      781 ttggggaacg ccgcggccgg caatggcgcg atgccgagcg cgtccatcag cacccaaagg
      841 gcaaatttgc gccccggctc ctgctcgacg ccgaagtcga ccgccagcgc ttcccgcccg
      901 tgcgccgctg cttccggcga aagctccgcc agatcggccg tgccgaaata atggtgaacc
      961 agcgcgtcca gctccatcgc gcctcgccac tccattgccg gcctctcgtc aagaccttcc
     1021 aggcgctgta gggggcgccg cgatggactc ccgaccgacc aaccgccccg accggcggac
     1081 ctttgcaatc atatctcacc cagacgccgg caagactacc ttgacggaaa agctgctgct
     1141 gttcggcggc gccatccatg cggccggcga agtgaaggcg aggggccagg cgcgccgcgc
     1201 gcgttccgac tggatgaaga tcgagcagca gcgcggcatt tccgtcacct cgtcggtgat
     1261 gacgttcgag cgcgagggcc tcaccttcaa cctgctggac acgcccggcc acgaggactt
     1321 ctcggaggat acctatcgca cgctgacggc agtcgattcg gctgtcatgg tgatcgatgc
     1381 ggcgcgcggc atcgaggcgc agacgcgcaa gctgttcgag gtgtgccgcc tccgttccgt
     1441 cccgatcatc acgttcgtca acaaggtcga ccgcgaaggg cgccacccgt tcgacctgct
     1501 cgacgaaatc gccgcggacc tggcgctgga cgtcagcccg atgaactggc ccatcggtat
     1561 gggcggcata ttcgaagggc tttatgatct ggagcgcaaa agcctgatgc gccccgacgg
     1621 gaccaatgtg ccggcgaacg acctggccgg cctgatctcg ccccaggcgc aggagacggt
     1681 cggcgaggaa ctggggctga tcgacgccgg ctatgccgcg ttcgacgaag tcgcctatcg
     1741 gcacggcgac ctcacgccgg tctatttcgg ctcggcgctc agggaatatg gcgtcgccga
     1801 gctgatcgat gcgcttgccc gcttcgctcc ttcgccgcgc ccccagccgg cggagcccga
     1861 ggcggtatcg cccgacgatc cggccgtcac cggcttcatc ttcaaggtgc aggcgaacat
     1921 gaacccgatg caccgcgacc gggtcgcgtt catgcggctc tgctcgggca aattccgacg
     1981 gggcatgaag ctcaaccagg tcggcaccgg caagtcgatc gcggtgcaca gtccgatcct
     2041 gttct
//
LOCUS       DASQVK010000211         8189 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_361548,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000211 DASQVK010000000
VERSION     DASQVK010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 8189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8189
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_361548"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1193)
                     /locus_tag="VE567_04570"
     CDS             complement(<1..1193)
                     /locus_tag="VE567_04570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HYZ48149.1"
                     /translation="MRLLAAVSALALSACAVGPNYVAPTPPAPATGAFLSTAPQATSA
                     APAVEGEWWRLYKDPVLDRLVAEALQANTDVRVAVARLERARASLREVRADRTPQVNL
                     GGSAQYGRLPSAQRAPGADREDWFVDTGLDIAYEVDLFGRVSRNIEAAKGDVGAAAAD
                     ADAVRVAVAAETTRAYADAVSSAERLDVAQRIVTLLDRSTGLMRKREEAGLTTPLDTA
                     RIRALREQRQAEIPLLQAQRESALFRLATLTGRAPRELPDEASSRTTTLRLDQPIPVG
                     DGTALLARRPDVRAAERRLAAATARIGVATADLYPRITLGGSIGSSGAGFGNVFGAGP
                     FTWLLGPLLNWSLNQAPARARVAEANADSRAALAQFDGTVLQALEETETALSGYARIL
                     ERRAAL"
     gene            complement(1205..4381)
                     /locus_tag="VE567_04575"
     CDS             complement(1205..4381)
                     /locus_tag="VE567_04575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009822828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0042908 - xenobiotic transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit"
                     /protein_id="HYZ48150.1"
                     /translation="MRLSRFFITRPIFAAVIAIVITIVGAIAYFGLPVSQYPDIVPPT
                     VTVSTTYPGASAETVAETVAAPIEQEINGVDNMLYQSSQSTGDGRLTVTVTFKLGTNL
                     DTAQVLVQNRVALAEPRLPDEVRRQGVVVRKTSPSWLMAVNVLSPDGSLDRSYVSNYV
                     LTQIKDRLTRVDGIGDVQVFGARDYAMRVWIDPGRAAELGLTAGEIVAALRAQNVQVA
                     AGTVGQPPFDNGAAHQLNVETQGRFNTPQEFADIIIRTDPSGAITRLSDVARVELGAE
                     NYGVNAYLSGKDSVILGITQRPGTNALAAEQGILRELKAAKASFPKGLDYRVIWNPTQ
                     FISESMHAVQETLLEAMLLVVLVILVFLQSWRAAVIPIVAIPVSLIGTFAVLAALGYS
                     LNTLSMFGLVLAIGIVVDDAIVVVENVERNLEHGLSPLEAARRSMDEVSTALVAIVLV
                     LCAVFVPTTFLTGISGQFYRQFAVTIASATIISLVLSLTLSPALAAMLLRPKATHAPA
                     RGWRRVLFLAGERFNRGFDALSRWYTELTRKLIARPRQMLFAYAGLVAATFALFWITP
                     AGFIPGQDQSYALAAVQLPPGSSIAQTDKVLRKMVDKLLKVPGTEAAVMFAGFDGASG
                     TQASNAGAAYITFKPFGHRPQGGRTEAEIVASMRGAVADMNEAMVFVIPPPVIQGIGN
                     GGGFRMMVQDRNGAGYTALGQAAGGLIGQANQTKGLTQVYTLFNTATPRVYADIDRAK
                     ADMLGVPAARVFETLSVYLGSAYVNDFNLLGRTFRVTAQADSSFRDDPADIANLKTRS
                     DFGGMVPIGSVATFQDRTGPYRVTRFNLFPAVEVDGETAPGYSTGQSMAAMEKLATKL
                     PSGFSGEWTDLAFQQKAAGNVAGIAFGMAVLFVFLVLAAQFESLVLPLAIILIVPMTL
                     LAAMIGVNLRGMDNNILTQIGLIVLIGLAAKNAILIVEFAKQAEERGLALADAAVAAA
                     GSRLRPILMTSFAFVLGVMPLVFASGPGWELRQALGTAVFFGMLGVTAFGLLFTPVFY
                     VVSRTLGDRFARRRGDAGQGAPALLPAE"
     gene            complement(4446..5723)
                     /locus_tag="VE567_04580"
     CDS             complement(4446..5723)
                     /locus_tag="VE567_04580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HYZ48151.1"
                     /translation="MNMISRIETARAETRPADVQGGARTGGRWRKGVLIALPLAAVLA
                     GLVVANREAPAPPAPPVPTVTVAQPLVRDVNEWDDYVGRFEASKTVEVRPRVSGQIVA
                     VHFTDGQMVRKGQLLFTIDPRPFAAALAEARAGLASAQSDLALARADLGRAQRLLADE
                     AVSRSEIDRLQARVRAAEAAVAAGQARVRSRALDLEFTEVRAPIGGRVSDRRVDPGNL
                     VATGDGTASSLLTTINALDPIYFSFDASEALFLKAKRAREQGAEASPIEVRLQDEADY
                     RWSGRLDFTDNGLNPKSGTIRGRAVLDNPGLFLTPGMFGNMRLANGGTVKALLVPDAA
                     VQTDQARKIVLVVGPDGAVAAKPVAPGPLVDGLRVIHAGLTPQDRVVIAGTQMAMPGA
                     KVQVRPGRVEPARTAQAPEIAAPPPGQATLAAR"
     gene            complement(5728..6114)
                     /locus_tag="VE567_04585"
     CDS             complement(5728..6114)
                     /locus_tag="VE567_04585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010408295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48152.1"
                     /translation="MAYLDFAAPAGALTPVVARPHHAPAKASLTPLEWSVVALAQRDT
                     LASLREPGRISTALAAIFGGRFETRLADPRLEALRRVSVHGWYHGFAVPESETRDFYE
                     AGFGPEHLELVLTSISRGRDRRRRKA"
     gene            complement(6397..7008)
                     /locus_tag="VE567_04590"
     CDS             complement(6397..7008)
                     /locus_tag="VE567_04590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HYZ48153.1"
                     /translation="MEVTLAAPHRGRPREFCVEAALAAALRVFWSKGYEGASMADLTE
                     AMGITKPSLYAAFGNKEQLFIKALDLYEREKMDYVGKALAEPTARKVAEHLLRGGLES
                     QTSNCEPRGCLGVISSVTCGAEAESIREFVLERGAKAKKALIERMERAKLEGDLPAHV
                     DVEGLTSYLYAILQGMAVQAGAGASREELERLIETSLMVWPSH"
     gene            7153..7941
                     /locus_tag="VE567_04595"
     CDS             7153..7941
                     /locus_tag="VE567_04595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2189 domain-containing protein"
                     /protein_id="HYZ48154.1"
                     /translation="MAVAQPVVGQVASESFEVRRISSSDVRESLAQGWDDFLSKRGDL
                     IFIGILYPLIGLFAAIVAMQGPWLPLFMPVAAGISLLGPIAAIGFYELARRREQGLES
                     DWSHFFDVRKRPAWESIIAVASVLIVVFAAWVAVAGMLYTLLIGTAPESVRGFLATVF
                     TTPEGWALIIVGNLIGLCFAALVLTISVVSMPLLVDHDVDARTAIDTSVKAVMANKAM
                     MMLWGLAVAALLVIGSIPAFLGLAVVLPVLGYATWHLYRHLVIS"
     gene            complement(7954..>8189)
                     /locus_tag="VE567_04600"
     CDS             complement(7954..>8189)
                     /locus_tag="VE567_04600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007687523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c family protein"
                     /protein_id="HYZ48155.1"
                     /translation="SGLGGQWTYEQLDRFLTAPARAVPGTKMGFAGIRNPRERAHVIA
                     FLATLGSSKLPLPLPKVAASAPPQTAAKANVTS"
BASE COUNT         1348 a         2729 c         2782 g         1330 t
ORIGIN      
        1 agcgcggccc ggcgctccag gatgcgggca tagccgctca gcgccgtctc ggtctcttcc
       61 agagcctgca gcaccgtccc gtcgaactgc gccagcgccg cccggctgtc ggcgttggct
      121 tccgccacgc gcgcccgcgc cggggcctgg ttgagcgacc aattgagcaa cggcccgagc
      181 agccaggtga acggacccgc accgaagaca ttgccgaagc cggcgccgct cgatccgatc
      241 gagccgccga gcgtgatccg cgggtagagg tccgcggtgg cgacgccgat ccgcgcggtc
      301 gcggccgcca gccggcgctc ggccgcgcgc acgtccggcc gccgggcgag cagcgcggtg
      361 ccgtcgccga ctgggatcgg ctggtcgagg cgcagggtcg tcgtgcgcga ggacgcctcg
      421 tcgggcagct cgcgcggcgc tcgtcccgtc agcgtagcga gccggaacaa ggccgactcg
      481 cgctgtgcct gaagcagcgg gatctcggcc tggcgttgct cgcgaagcgc ccggatccgg
      541 gccgtatcga gcggcgtcgt cagccccgct tcctcgcgct tgcgcatcag cccggtcgag
      601 cggtcgagca gcgttacgat ccgctgcgcc acgtccagcc gctcggcgga cgagacggcg
      661 tcggcatagg cccgggtggt ctcggcggcg accgccacgc gcacggcatc ggcatccgcg
      721 gcggcagctc cgacgtcgcc cttcgcagct tcgatgttgc ggctgacccg gccgaacaga
      781 tcgacctcat aggcgatgtc gagcccggta tcgacgaacc agtcctcgcg atcagcgccg
      841 ggcgcgcgct gggcggacgg caggcggcca tattgggcgc tgccgcccag attgacttgc
      901 ggcgtgcgat cggcgcgcac ttccctaagc gacgcccgcg cacgctccag ccgggcgacg
      961 gccacgcgca cgtccgtgtt ggcctggagc gcctcggcaa ccagccggtc gagcaccgga
     1021 tccttgtaca gacgccacca ctccccctcg accgcgggcg cggcgctggt cgcctgcggc
     1081 gcggtcgaga ggaaggcgcc cgtggcgggg gcgggcggcg tcggggcgac ataattggga
     1141 ccgacagcgc aggcgctgag ggccaaagcc gaaacggcgg caagcaagcg catcgacaag
     1201 ctccttattc ggcgggcagc agcgcgggcg cgccctgccc tgcatcgccg cgccgccggg
     1261 cgaaccggtc gcccagcgtg cggctcacga catagaaaac gggggtgaaa agcaggccga
     1321 acgcggtgac gcccagcatg ccgaagaaca ctgccgtacc cagcgcctgg cgcagctccc
     1381 agccaggccc gctcgcaaag acgagcggca tcacgcccag gacgaaggcg aagctggtca
     1441 tcaggatagg ccgcaaccgg ctgcccgccg ccgcgaccgc ggcatcggca agggccaggc
     1501 cccgctcttc cgcctgcttg gcgaactcga cgatcaggat cgcgttcttg gctgcgagac
     1561 cgatcagcac gatcaggccg atctgggtca ggatattgtt gtccatcccg cgcaggttca
     1621 cgccgatcat cgccgccaac agagtcatcg gcacgatcag gatgatggcg agcggcagca
     1681 ccaggctttc gaactgggcg gcgagcacca ggaagacgaa caggaccgcc atgccgaagg
     1741 cgatgccggc gacattgccc gccgcctttt gctggaaggc gagatccgtc cattcgccgc
     1801 tgaagcccga gggcagcttc gtcgcgagct tctccatcgc cgccatcgac tggccggtcg
     1861 aatagccggg cgccgtctca ccatcgactt cgacggccgg gaagagattg aagcgcgtga
     1921 cgcgataggg gccggtgcga tcctggaagg tcgcgaccga tccgatcggc accatgccgc
     1981 cgaaatcgga gcgcgtcttc agattggcga tgtcggccgg atcgtcgcgg aaggacgagt
     2041 cggcctgggc ggtcacccgg aaagtgcgcc cgagcaggtt gaagtcgttc acataggccg
     2101 agcccagata gaccgacagc gtctcgaaca cacgcgcggc gggcacgccc agcatatcgg
     2161 ccttggcgcg gtcgatatcg gcatagacgc gcggcgtggc ggtgttgaac agggtgtaga
     2221 cctgagtcag ccccttggtc tgattggcct ggccgatcag tccgccggcc gcttgcccca
     2281 gcgccgtata gccggcgccg ttgcgatcct gcaccatcat gcggaagccg ccgccattgc
     2341 cgatgccctg gatgacgggc ggcggaatga cgaagaccat cgcctcgttc atgtccgcga
     2401 ctgcgccgcg catgctcgcc acgatctcgg cctcggtgcg gccgccttgc gggcgatgcc
     2461 cgaacggctt gaacgtgata taggcagcgc ccgcattgga agcctgggtg ccggaagcgc
     2521 cgtcaaagcc agcgaacatc acggccgcct cggtgcccgg cactttcagc agcttgtcga
     2581 ccattttgcg cagcaccttg tcggtctgtg cgatcgagct gccgggcggg agctggaccg
     2641 ccgcgagcgc ataactctgg tcctgcccgg ggatgaagcc ggcgggcgtg atccagaaca
     2701 gcgcgaaggt cgctgcgacc aggccggcat aagcgaacag catctgccgg ggccgcgcga
     2761 tcagcttccg cgtgagctcg gtataccagc ggctcagtgc gtcgaagccg cggttgaagc
     2821 gctcgccggc caggaacagc acgcgccgcc agcctctggc tggggcgtgc gtcgccttgg
     2881 ggcggagcag catcgccgcc agtgccggcg acagcgtcag cgagagcacg agcgagatga
     2941 tcgtggcact ggcgatcgtc accgcgaact ggcggtagaa ctggccggaa atgccggtga
     3001 ggaacgtcgt cggcacgaag acggcgcaca gcacgagcac gatcgcgacc agcgcggtcg
     3061 agacttcgtc catcgagcgc cgcgccgctt cgagcggact cagcccgtgc tcaaggttgc
     3121 gctcgacatt ctcgacgacg acgatcgcgt cgtcgacgac gatgccgatg gcgagcacga
     3181 ggccgaacat cgacagggtg ttcagcgaat agccgagcgc cgccagcacc gcgaaggtgc
     3241 cgatcagcga caccgggatc gcgacgatcg ggatcaccgc cgcgcgccag ctctggagga
     3301 agacgagaat gacgaggacg acgagcagca tcgcctcgag cagcgtctcc tgcacggcat
     3361 gcatcgattc gctgatgaac tgggtggggt tccagatgac gcgatagtcg aggcccttgg
     3421 ggaagctcgc cttggcggcc ttgagctcgc gcaagatgcc ctgctcggcg gcgagcgcat
     3481 tggtgcccgg ccgctgggta atgccgagaa tgaccgagtc cttgcccgat agataggcat
     3541 tgacgccata attctcggca ccgagctcga cgcgcgcgac gtcggacaag cgcgtgatcg
     3601 ccccgctcgg atcggtgcgg atgatgatgt cggcgaattc ctgcggggtg ttgaaccggc
     3661 cctgcgtctc gacattgagc tgatgcgcgg cgccattgtc gaagggcggc tggccaaccg
     3721 tgccggcggc gacctggacg ttctgcgccc ggagcgcggc cacgatctcg cccgcggtga
     3781 gccccagctc ggccgcgcgg ccggggtcga tccacacgcg catcgcataa tcgcgcgcgc
     3841 caaagacctg gacatcgccg atgccatcga cgcgcgtcag ccggtccttg atctgggtca
     3901 gcacataatt ggagacatag ctgcgatcga gcgagccgtc cggcgacagc acgttcaccg
     3961 ccatcagcca ggacggcgag gtcttgcgca ccactacgcc ttgccggcgc acttcgtcgg
     4021 gcaaccgcgg ctcggcgagc gcgacacggt tctgcaccag cacctgggcg gtatcgagat
     4081 tggtgcccag cttgaacgtg acggtgaccg tcaggcgccc gtcgcctgtc gattgcgacg
     4141 actggtagag catattgtcg acgccgttga tctcttgctc gatcggcgcc gcgaccgttt
     4201 ccgccaccgt ctcggccgag gcgccgggat aggtggtgga gaccgtgacg gtcggcggca
     4261 cgatgtccgg atattgcgag accggcaggc cgaaataggc gatcgcgccg acgatcgtga
     4321 tcacgatggc gatcaccgcc gcgaagatcg ggcgcgtgat gaagaaacgc gagaggcgca
     4381 tggggcttct cctcgctcga gatgagctgg attgttgcgg tcgaagggcc ggcggccctt
     4441 cgcgtctagc gggcggccag ggtcgcctgg ccgggcggcg gggccgcgat ctcgggcgcc
     4501 tgcgcggtgc gggcgggctc gacccggccg gggcggacct gcactttcgc gcccggcatc
     4561 gccatttgcg tgcccgcgat cacgacccgg tcctgcggcg tcaggccggc gtggatcacg
     4621 cgcagtccgt caaccagcgg acccggcgcg accggcttgg ccgccaccgc gccgtccggc
     4681 ccgacgacga gcacgatctt gcgcgcctgg tcggtctgca cggcggcgtc cggcaccagc
     4741 agggccttga ccgtcccgcc attcgccagc cgcatgttgc cgaacatgcc cggcgtcagg
     4801 aacaggccgg ggttgtcgag caccgcgcgg ccgcggatcg tgcccgactt gggattgagg
     4861 ccgttgtccg tgaagtcgag ccggccgctc cagcgataat ccgcctcgtc ctgcaggcgg
     4921 acctcgatcg gcgaggcttc ggccccctgc tcacgggcgc gtttcgcctt caggaacaag
     4981 gcttcggacg cgtcgaagct gaaatagatc ggatcgagcg cattgatcgt agtgagcagc
     5041 gagctcgccg tgccgtcgcc cgtcgcgacc agattgccgg gatcgacccg gcgatccgaa
     5101 acgcggccgc cgatgggcgc gcgaacctca gtgaactcca ggtcgagtgc gcgggagcgc
     5161 acccgcgcct gacctgccgc gactgccgcc tcggcggcgc ggacgcgggc ctggagccgg
     5221 tcgatttcgc tccgggacac agcctcgtcc gcgagcagcc gctgggcgcg gcccagatcg
     5281 gcacgagcga gcgcgagatc gctctgcgcg ctggccagtc cggcgcgcgc ttcggcgagc
     5341 gccgctgcga aggggcgcgg atcgatcgtg aagagaagtt gccccttcct gaccatctgg
     5401 ccgtcggtga aatgcaccgc gacgatctgg ccggagacgc gcgggcgaac ctcgaccgtc
     5461 ttgctcgcct cgaaccggcc gacataatcg tcccattcgt tgacgtcgcg gacgagcggc
     5521 tgcgcgaccg taaccgtcgg caccggcggg gccgggggcg cgggagcttc ccgattggcc
     5581 accaccaagc cggcgagcac tgccgcaagc ggaagcgcga tcagcactcc cttgcgccat
     5641 cggccgcccg tgcgagcgcc gccctgcaca tcggccgggc gcgtttcggc gcgggccgtt
     5701 tcgatccggg agatcatgtt catgaggtta cgctttccga cggcgccgat cgcggccgcg
     5761 actgatgctg gtgaggacga gttcgagatg ctccggaccg aagccagcct cgtaaaagtc
     5821 ccgcgtctcc gattcaggca cggcgaagcc atgataccag ccatggaccg agacgcggcg
     5881 gagcgcttcg aggcggggat ccgcgagccg ggtttcgaag cggccgccga atatggccgc
     5941 gagcgccgtc gagatccggc cgggctcgcg cagcgacgcg agggtatcgc gctgggcaag
     6001 cgccaccacc gaccattcga gcggcgtcag gctggccttg gcgggcgcgt gatgaggccg
     6061 tgcaacgaca ggcgtcagcg caccggccgg ggcagcgaaa tcgagatagg ccatgcttta
     6121 tctccctttt ctcgccggag ccgggcaagc atcgcccgtt cgcgaaacgc atgcgcgctc
     6181 gcgtgcttcg gcactccatg tccatggcac gatggctgcc gcggccccgc cgcttcagat
     6241 cgtgctcccc tccactcttg taattgcgcg acgctctcgc cgccgttctc tataccgatc
     6301 ggtatataat gcgttcagct gcagttcaag gccttttata ccgatcggta tgacattttt
     6361 tcgaacgcat tccgtttttg cggcgaaatg atcgattcag tggctcggcc acaccatcag
     6421 gctggtctcg atcagccgct ccagctcctc gcgcgaggcg ccggcgccgg cctgtacggc
     6481 catgccctgc agtatcgcgt agagatagct ggtcagcccc tcgacatcga catgggccgg
     6541 cagatcgcct tccagcttcg cccgttccat gcgttcgata agggccttct tcgctttcgc
     6601 gccgcgctcc agcacgaact cgcggatcga ttcggcctcc gccccgcagg tgaccgaact
     6661 gatcaccccc agacaccctc tcggctcgca gttgctggtc tggctttcca gcccaccgcg
     6721 cagcagatgc tcggcgacct tgcgggctgt cggttcggcc aaggccttgc cgacatagtc
     6781 cattttctcg cgctcataga ggtcgagcgc ctttatgaag agctgttcct tgttgccgaa
     6841 cgcggcataa aggctgggct tggtgatccc catggcctcg gtgaggtcgg ccatcgaggc
     6901 gccctcataa cccttgctcc agaacacgcg gagtgcggcc gcgagcgccg cctccacgca
     6961 gaactcgcgc ggacggccac gatgaggagc ggctagagtg acttccataa cgagcggtat
     7021 ataagggatg ccgttcgaaa atgcgagcgc ggttttcaaa gagcggcgca gcggcggatt
     7081 cgccgccgct tgtcgctcct cgaccagaag agtatggtcg aacgcctaat cgtatcgact
     7141 aggagagcag tcatggcggt cgctcaacct gttgtcgggc aagttgcgtc cgagtcgttc
     7201 gaggttcgga ggatcagtag ctccgatgta cgcgagtcgc ttgcgcaggg atgggacgat
     7261 ttcctgagca agcgcggaga cctgattttc atcggaattc tctatcctct gattggcctc
     7321 ttcgcggcga tagtcgcgat gcagggccca tggctgccgc tatttatgcc ggttgctgcg
     7381 ggcataagtc tcctcggccc gatcgccgcg atcggatttt acgaactggc ccggcggcgg
     7441 gagcaaggac tggagtccga ctggtctcac ttcttcgatg ttcggaagag accagcctgg
     7501 gaatcgatca tagcagtggc aagcgttctt atcgtcgtgt ttgcggcctg ggtcgccgtc
     7561 gccggaatgc tctacaccct gttgatcggc accgctccgg aatcggtccg cggctttctc
     7621 gcgacggtgt tcacgacgcc cgaaggctgg gcgctcatca tcgtcggtaa cctcatcggg
     7681 ctctgctttg ccgcgctcgt gctgacgatc agcgtggtct cgatgccctt gctggtcgac
     7741 catgacgtgg acgcccgcac ggcgatagac acctcggtca aggcagtcat ggcaaataag
     7801 gcgatgatga tgctgtgggg cctggcggta gctgcgcttc tggtgatcgg ctcgattccg
     7861 gcgtttctgg ggctggcagt ggtgctgccg gtgctgggct acgccacctg gcacctctac
     7921 aggcacctcg tcatatccta atcgctttcg gcgtcaggac gtgacgttcg ccttcgccgc
     7981 cgtttgcggg ggcgccgatg ccgcaacttt aggcagcggg aggggcagct tcgacgagcc
     8041 aagcgtcgcc aggaacgcga tcacatgcgc ccgttcgcgc ggattgcgga taccggcaaa
     8101 gcccattttc gtaccgggca ccgcgcgggc gggggccgtc agaaagcgat ccagttgctc
     8161 ataggtccat tgcccgccga gcccgctca
//
LOCUS       DASQVK010000212         2068 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_234976,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000212 DASQVK010000000
VERSION     DASQVK010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2068)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2068)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2068
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234976"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..493
                     /locus_tag="VE567_04605"
     CDS             <1..493
                     /locus_tag="VE567_04605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007713054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HYZ48156.1"
                     /translation="TILTYEVEAQISGKLAQLGGRMIDATAKSMSRAFFKKLAAEIDA
                     RRHGTGGAPAEAAPAKAGAGRAGPAAVPSAAPPEYPPSPVYAPPHGYPPPPVPAQGGR
                     LQPVSIILLVVLLIVGWYLSGGSAERGVRLLAGQNVSPDFVGVVQLLTILAIGYLLGR
                     SSK"
     gene            696..>2068
                     /locus_tag="VE567_04610"
     CDS             696..>2068
                     /locus_tag="VE567_04610"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HYZ48157.1"
                     /translation="MALIEAGGAVLSKDALMARVWPDRVVEENNLQTQISDLRAAFGA
                     DHALIRTVSGRGYQFTGEVRILAADPGEHAGVAAAAPGAVLPPTNLPESVSELIGRDD
                     ELHEIVDLAATHRLVTLTGAGGIGKTRLALAVARQLLPHFADGVWLAELAPLADPGLV
                     PAAVAAALGLEFPASAVSAEHVANALSGKELLLVLDNCEHVVAAAAIMAEALLRACPS
                     VHVIATSREPLKAEGEWLSPVPSLAVPTEAAAEEGDPLGYGAVRLFLDRAQAVDPHFA
                     PDERLVVLIAAICRRLDGIPLAIELAAARAATLGIEGLAARLDDRFELLTGGRRTALP
                     RHQTLRATLDWSYGLLAEPERIVLRRLAVFAGVFNLEAASAVVASLDISSPDVVEGLL
                     GLLAKSLVSAEASGSIAGYRLLDTMRAYAFEKLGESGEMAVVARRHAEYYRDLFERAE
                     TEWKTRPS"
BASE COUNT          303 a          704 c          693 g          368 t
ORIGIN      
        1 gacgatcctg acctatgagg tcgaggcgca gatcagcggc aagctggcgc agttgggcgg
       61 ccgcatgatc gacgcgacag cgaagtcgat gtcgagggcc ttcttcaaga agctcgccgc
      121 cgagatcgat gcccgtcggc atggcaccgg cggggcgccg gccgaggccg ctcccgcgaa
      181 ggccggcgcc ggccgagccg gcccggccgc agtaccctca gcagcacccc cggaatatcc
      241 gccgtcaccg gtctatgcgc cgcctcacgg ttatcctccg ccccctgtgc cagcccaggg
      301 cggtcgactt cagcccgtct ccatcatcct gttggtcgtc ctgcttattg tcggatggta
      361 tctttcgggc ggatcggccg aacgcggtgt acgcctcctc gccggacaga atgtctctcc
      421 ggatttcgtc ggcgtggttc aacttctgac gatactcgcg atcggctatc tgttgggacg
      481 gtcatcgaaa tgacccaatg cccattttca tcgcacacgg cagcttcgcg cccatgcacg
      541 aacccgctcc gcgggatcgg tagtctctga tggatcccgc cgttcaaccg ccggcgagcg
      601 tcgcattcgg tcgtttccgg gtgttgccgc accgccgtga gctgttggcc gatggccacc
      661 cgatcaagct cggcgggcgc gccttcgacc tgctggtggc gctgatcgag gccggcgggg
      721 ccgtcctcag caaggacgcc ctgatggcgc gtgtctggcc cgaccgggtg gtcgaggaga
      781 acaacctgca gacccagatt tccgacttgc gcgccgcctt cggcgcggac cacgcgctga
      841 tccgcacggt gtccggacgt ggctatcagt ttaccggcga agtccgcatc ctggcggcag
      901 acccgggcga gcacgctggc gtggccgcag cagcgccggg cgcggtgttg ccgccgacca
      961 atctgccgga gtcggtgtcc gagctgatcg gccgggatga cgagctgcac gaaatcgtgg
     1021 atcttgccgc gacgcatcgg ctggtcaccc tgaccggcgc cggcgggatc ggcaaaacgc
     1081 gcctggcgct cgcagttgca cgccagctgt tgccgcactt tgccgatggg gtctggctcg
     1141 ccgagctggc accgctcgcc gatcctggtc tcgttcccgc cgccgttgcc gcggccctcg
     1201 ggctcgaatt tcctgccagc gcggtctcag cggagcatgt tgcaaatgcg ctgagcggga
     1261 aagagctgct gctcgtgctc gacaattgcg agcatgtggt tgccgccgcg gcgatcatgg
     1321 ccgaggcgct gctgcgcgcc tgcccgtcgg tgcatgtcat cgccaccagc cgcgagccgc
     1381 tcaaggcaga gggagaatgg ctgtctccgg tgccgtccct cgcggttccg acagaggctg
     1441 ctgcggaaga aggcgacccg ctcggatacg gcgctgttcg gctgttcctc gacagggcgc
     1501 aggcagtaga cccgcacttc gcgcctgacg aacgtctcgt cgtgctaatt gcagcgatct
     1561 gccggcggct tgacggcatt ccactggcga tcgagctggc ggcggcacgc gccgccacac
     1621 tcggcatcga ggggctcgcc gcccggctcg atgatcgctt cgaactgctc accggcggcc
     1681 ggcggacggc cttgccgcgg caccagaccc tgcgcgcgac actcgactgg agctatggct
     1741 tgctggccga gcccgaacgc atcgtcttgc gtcggctggc agtcttcgcc ggcgtcttca
     1801 acctggaggc tgccagcgcg gttgtggcaa gcctcgacat ctcgtcgccg gacgtcgtgg
     1861 aagggcttct cggtctgttg gcgaagtcgc tcgtgtccgc cgaggccagc ggttctattg
     1921 ccggttaccg actgctcgac acgatgcgcg cctacgcgtt cgagaaactt ggcgagagcg
     1981 gcgagatggc ggtggtcgcg cgccgacacg ccgaatacta ccgcgacctg ttcgagcggg
     2041 ccgagaccga atggaagacg cgcccctc
//
LOCUS       DASQVK010000213         2728 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_171941,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000213 DASQVK010000000
VERSION     DASQVK010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2728
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171941"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..552
                     /locus_tag="VE567_04615"
     CDS             <1..552
                     /locus_tag="VE567_04615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYZ48158.1"
                     /translation="TARHLPDEISAGRFREDLYYRLNVVPVHLPPLTERREDIPGLVD
                     HFVARYATERRVPTPEVAADAMAALQAYDWPGNVRQLRNIVERTVIMAPGDRIGRIDI
                     DMLPPEVLSDQPQIAANATTTAMMGAPLREARETFEREYLRVQIRRFSGNISRTASFI
                     GMERSALHRKLKLLGLADSKEEE"
     gene            594..1130
                     /gene="hfq"
                     /locus_tag="VE567_04620"
     CDS             594..1130
                     /gene="hfq"
                     /locus_tag="VE567_04620"
                     /inference="COORDINATES: protein motif:HMM:NF010691.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HYZ48159.1"
                     /translation="MLPLGEPRSRQQERRCDVADKVNNLQDIFLNSLRKSKTPVTMFL
                     VKGVKLQGIITWFDNFSVLLRRDGNSQLVYKHAISTVMPAAPVDLGPIEKAFAESQKK
                     PALLQEVFLSAVRRSEEPVTMFLVNGVMLQGEVAAFDLFCLLLRRENQTQLVYKHAIS
                     TVQPAHPLNLAEEQAQGD"
     gene            1183..2475
                     /gene="hflX"
                     /locus_tag="VE567_04625"
     CDS             1183..2475
                     /gene="hflX"
                     /locus_tag="VE567_04625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HYZ48160.1"
                     /translation="MTGFQRDYDEFARGARAVIAYPNLQSGEGRDTEARLDEAAGLAE
                     AIGIEVVERLAFRVRAPKPATLFGSGQVEDIATSVRAHDAQLVIIDGAITPVQQRNLE
                     EAVKAKVIDRTGLILEIFGERAATAEGRLQVELAHLDYQAGRLVRSWTHLERQRGGFG
                     FLGGPGETQIEADRRMIRDRMAKLRRELETVSRTRTLHRERRRRAPWPVIALVGYTNA
                     GKSTLFNRMTGAEVMAENLLFATLDPTMRQISLPGLDKAILSDTVGFVSDLPTQLVAA
                     FRATLEEVISADLIIHVRDIAHPDSDAQRADVEHVLAEIGAEAPRMEAWNKLDRLEPE
                     QRQQIETDAARRDNVALISALTGEGVEGLKRMVSDRLTAANRVRHIELPMTDGAAAAW
                     LHEHGEVIGEETMDGDRIAYDVRLSDRDWDRFQARSFA"
     gene            complement(2454..>2728)
                     /locus_tag="VE567_04630"
     CDS             complement(2454..>2728)
                     /locus_tag="VE567_04630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MazG nucleotide pyrophosphohydrolase
                     domain-containing protein"
                     /protein_id="HYZ48161.1"
                     /translation="DASGAREKILEELDEIAAAPTDELEEEVGDLLFAVVNFARHLKI
                     DPEAALRKANDKFERRFRAMEEMDARFVELSLDEKEALWGQAKERA"
BASE COUNT          501 a          846 c          905 g          476 t
ORIGIN      
        1 acagcgcgtc atttgccgga cgaaatctcg gccggacggt tccgcgagga cctttattac
       61 cggcttaatg tagtgccggt gcatctgcct ccgctaaccg agcggcgcga ggacattccc
      121 ggcttggtcg accatttcgt cgcgcgctac gcaacggagc ggcgggtgcc gacgcccgaa
      181 gtggcggcgg acgcgatggc ggcgctgcag gcctatgact ggcccggaaa tgtccgccag
      241 ctccgcaaca tcgtcgagcg cacggtcatc atggcgccgg gcgaccggat cggccgtatc
      301 gacatcgata tgctgccgcc cgaagtccta agtgaccagc cccagatcgc agcaaacgcg
      361 acgacgaccg cgatgatggg cgcgccgttg cgcgaggcgc gcgaaacgtt cgagcgcgaa
      421 tatctccgtg ttcagattcg ccggttttcc gggaacattt cgcgcaccgc gagcttcatt
      481 ggcatggagc gctcggcgct gcaccggaag ctcaaattgc tggggctcgc cgactccaag
      541 gaagaagagt gaagcgcgac tcgacggtcc cggcctttgc ggctatgggg tgaatgcttc
      601 cactggggga gccgagaagc cgccagcaag agcggaggtg tgacgtggcc gacaaggtca
      661 ataatcttca ggacatcttc ctgaattcgc tgcggaaatc gaagacgcca gtgaccatgt
      721 tcctggtcaa gggcgtcaag ctgcagggaa tcattacctg gttcgacaat ttctccgtgc
      781 tgctgaggcg ggacgggaat tcgcagcttg tgtacaagca tgcgatctca accgtgatgc
      841 cggcggctcc ggtcgacctc gggccgatcg aaaaagcctt tgccgagagc cagaaaaagc
      901 ccgctctgct ccaggaggtt ttcctgagcg cagtgaggcg cagcgaggag ccggtcacca
      961 tgttcctggt gaacggcgtc atgctgcaag gcgaagtcgc agcgttcgac ctcttctgtt
     1021 tgctgctccg ccgggagaac cagacgcagc ttgtgtacaa gcatgcgatc tcaaccgtgc
     1081 agccggccca tccgctcaat ttggccgagg agcaggcgca gggagattga gcgtctcggc
     1141 tgacggcttg agaatggctc gtgccccctt acctacaacc gaatgaccgg ttttcagcgc
     1201 gactatgatg aattcgctcg cggcgcgcgg gcggtgatcg cttatcccaa cctgcagagc
     1261 ggggaggggc gcgataccga ggcacgattg gacgaagcgg ccggcttggc cgaggcgatc
     1321 ggcatcgagg tggtcgaacg tctcgccttc cgcgtgcgcg cgcccaagcc cgcgactctc
     1381 ttcggcagcg gccaggtcga ggacatcgcc acctcagtgc gcgcccacga tgcgcaactg
     1441 gtcatcatcg acggcgccat cacgccggtg cagcagcgca acctggaaga agcagtcaag
     1501 gccaaggtga tcgaccgcac cgggctcatc ctcgaaatct tcggcgagcg ggcggcaacc
     1561 gcggaaggcc ggttgcaggt cgagcttgcg catcttgact accaagcggg ccgactggtg
     1621 cggagctgga cccaccttga gcgccagcgc ggcggcttcg gcttcctcgg cggccccggc
     1681 gaaacgcaga tcgaggccga ccgccgcatg atccgcgacc gcatggccaa gctccgccgt
     1741 gagctggaga cggtcagccg cactcgcacg ctgcaccggg agcgacgccg gcgcgcccct
     1801 tggcccgtga tcgcgctggt cggatacacg aacgcgggca aatcgacgct gttcaaccgg
     1861 atgaccggcg ccgaagtgat ggccgagaat ctcctgttcg cgacgctcga tccgacgatg
     1921 cggcaaattt ccctgcctgg gctcgacaag gcgatcctgt cggacacggt ggggttcgtc
     1981 tcggacctgc caacgcagct cgtggcggcc tttcgggcca cgctggagga agtgatctcg
     2041 gccgacctga tcatacatgt ccgcgacatc gcgcatcccg acagcgacgc gcagcgcgcc
     2101 gatgtcgagc acgtgctggc ggagatcggg gcggaggcgc cgcgtatgga agcgtggaac
     2161 aagctggacc ggctggaacc cgagcaacgc cagcagatcg agacggatgc cgcacggcgc
     2221 gacaatgttg cgctgatctc ggcgttaacg ggggagggtg tcgaggggct gaagcggatg
     2281 gtctcagacc ggctgaccgc ggccaaccgc gtccgccata tcgagctgcc gatgaccgat
     2341 ggcgcggcgg ccgcctggct gcacgagcat ggcgaagtga ttggcgaaga gacgatggac
     2401 ggcgacagga tcgcttatga tgtgcggctg tccgatcgcg actgggaccg gtttcaggcg
     2461 cgttccttcg cctgacccca tagtgcttcc ttttcatcga ggctgagttc gacgaagcgc
     2521 gcgtccattt cttccatcgc gcgaaagcgg cgctcgaatt tgtcgttggc tttcctgagc
     2581 gcggcttcag ggtcgatctt cagatgccgt gcgaagttga cgaccgcgaa gagcaggtcg
     2641 ccgacttctt cctccagctc atcggtgggc gcggctgcga tctcgtccag ctcttcgagg
     2701 atcttttccc gcgcgccgct cgcgtcgg
//
LOCUS       DASQVK010000214         3839 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_298661,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000214 DASQVK010000000
VERSION     DASQVK010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3839)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3839)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3839
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298661"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(635..711)
                     /locus_tag="VE567_04635"
     tRNA            complement(635..711)
                     /locus_tag="VE567_04635"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(675..677),aa:Arg,seq:acg)
     gene            795..1277
                     /locus_tag="VE567_04640"
     CDS             795..1277
                     /locus_tag="VE567_04640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48162.1"
                     /translation="MRRLLILACFALPACANGIGPSLAKRPVESRSMAEPARAAMPPA
                     AADAALRSRIDALVAQAKAGQSAFGALLPQTQAAVAAAGAEGSEAWIAAQQSVSALEN
                     ARAGATGALAELDRLIADRLAAQSDAGMVELQQADAEVAGLVDAQQRELNALLARVSR
                     "
     gene            complement(1267..1815)
                     /locus_tag="VE567_04645"
     CDS             complement(1267..1815)
                     /locus_tag="VE567_04645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008069326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HYZ48163.1"
                     /translation="MDGVTLIEIHGKKPRIHSSAFIAPGCRLIGDIEIGPDVSIWYNC
                     VLRADVNFIRIGARTNIQDGSVCHVDSPRPGTPEGHPLIIGEDVLIGHMAMVHGCTLA
                     PRAFVGLGAIVMDGCAIDSEGMLAAGAMLTPGRRVGPRELWGGRPAKLMRVLSDEEVT
                     GNAIGIAHYVENGRAHRQAVSG"
     gene            complement(1803..2345)
                     /locus_tag="VE567_04650"
     CDS             complement(1803..2345)
                     /locus_tag="VE567_04650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017663749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYZ48164.1"
                     /translation="MSFAHATERLVLRSWCDSDVEAFEAACNTPAVTRYLGGLQSREE
                     IEAAIARMRQCEAENGFCFWALEGRSDGAFLGFCGLKPLNADGAPAAMQGAPEIGWRL
                     REGAWGQGYAKEAATAALDLAFGRFGLDQVYAITLTENAPSWGLMRRLGMTARPDLDF
                     DMPLHGRHVTYRMGRDEWTA"
     gene            complement(2342..>3839)
                     /locus_tag="VE567_04655"
     CDS             complement(2342..>3839)
                     /locus_tag="VE567_04655"
                     /inference="COORDINATES: protein motif:HMM:NF037959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fused MFS/spermidine synthase"
                     /protein_id="HYZ48165.1"
                     /translation="TDIMAMPLIWVIPLSLYLLSFTLAFAESRSVVASICRLSPVVVL
                     TMGGLSLQNATSAPLLAIGAELLLLFTVAVTLHAQIYASRPAPRYLTSLYLSMSIGGA
                     LGGVFSALVAPLLFDWTYEHPLLILLAGALIPQAYLFWASERLWQGGRARRLAIAICY
                     TVVVAGIAWLAIRRPWPWLYAHGPMFGAATIGLITLFCIGRRGPYLIGLAAMVLVFGG
                     WESLERSARGERYRSYFGIYTIRDDGDVRTLAHGTTSHGVQLLTPGQERVLTSYYTPS
                     SGVGQALQGLPAVAGRDARVGVVGLGAGTLACYTRPGQDWRVFEIDPTVVHIARETGK
                     FTFLARCNPHVKIVVGDARLSLATMPTGSLDFLALDAFSSDAIPMHLLTREAFAIYGR
                     VLDREGMLLVHISNRFFDLGPVLAAAAREGGWVGARYDDVLPPRSKAARYASNSSWVL
                     LTRDPSVLQRVTASPPPGGKWEALHERPGFSGWTDDYASVLPLVKEWR"
BASE COUNT          709 a         1276 c         1230 g          624 t
ORIGIN      
        1 cttcccgctc acattccgga tggatgggcc gagcgctgcc accccgcccg aaatcgatga
       61 tcaatctctc gtggcaatat actgtgacga gaagatggac atcgtggact gggaggcgtc
      121 agatatcagc cgtcttaatc cttggtgcta tacacgtttg acgtccaacc cctatgatga
      181 cggtaatcct gatcctgaga tttattgtgg tacatggttg aggcttccct tgcggaattc
      241 tattgatcct cgtcgcgtca cactgccgcc ggtttttggg ctgaaggggc ttcgacgcag
      301 actgttcgtg tcaccatcct ttgcgtgttt cctcacagct tcggattggc aggtgagcat
      361 tgtaaaacga cccctcgatt ttgaggcatt ctactcgggc ccacaatgtc cagttggcta
      421 ctgacctagg atcaggccgc tagtgtctgc tttccaccct tagcggacat ttctcaacga
      481 gagctggcca tcccctgtcg ggaagcgttc gtttggcacg atctcaggtg ggccggttaa
      541 atcgcgccag atcgtgccaa aacccgaaaa acatcgtgcc gtttggcacg atagcggctg
      601 acacacctat gcctgtgatt ttccaggggg gaagtggcgc gcccggaacg attcgaacgt
      661 ccgaccctca gattcgtagt ctgatgctct atccagctga gctacgggcg cgcggagaag
      721 cggccacata ggcggctggg gcggcggatg caagaccatt gcgaggcgat tcgaacgcct
      781 ctaggccagc cgtcatgcgc cgcctgctca tcctcgcctg cttcgccctg cccgcctgtg
      841 cgaacgggat cggcccttcg ctcgccaagc ggccggtcga atcccggagc atggcggagc
      901 cggcgcgtgc ggcgatgccc cctgccgcag ccgatgccgc actccggtcg cggatcgacg
      961 cgctggtcgc ccaagccaag gccggccaga gcgcgtttgg cgcgttgctg ccgcagaccc
     1021 aggcggctgt ggcggccgca ggcgctgagg gcagcgaagc ctggatcgcg gcgcagcaat
     1081 cggtgagcgc tcttgagaat gcccgtgcag gcgcgaccgg ggccttggcc gaactcgacc
     1141 gcttgatcgc cgaccggctg gcggcacaga gcgacgccgg catggtcgag ctgcagcagg
     1201 cggatgccga ggtcgcgggg ctggtcgacg cgcaacagcg cgaactgaat gccttgctgg
     1261 cgcgcgtcag ccgctgaccg cctgccggtg ggcacggccg ttttcgacgt agtgagcgat
     1321 gccgatggca ttgccggtga cttcctcgtc gctcagcacg cgcatcagct tggcggggcg
     1381 accgccccat agctcgcgcg ggccgacgcg gcgacctggc gtcagcatcg cgccggcggc
     1441 cagcatgccc tcgctatcga tcgcgcagcc atccatcacg atcgcgccca gccccacaaa
     1501 ggcgcgcggg gcgagcgtgc agccatgcac catcgccata tggccgatca gcacgtcttc
     1561 gccgataatc agcgggtggc cctcgggcgt ccccggacgc ggtgagtcga cgtggcagac
     1621 gctcccgtcc tgaatgttcg tgcgggcgcc gatccgtatg aagttcacgt cggcgcggag
     1681 cacgcaattg taccagatgc tgacatccgg cccgatctcg atatcgccga tcaaccggca
     1741 gccgggcgcg atgaacgccg acgagtggat ccgcggcttc ttgccgtgga tctcgatcag
     1801 ggtcacgccg tccattcgtc cctccccatc cggtacgtca cgtgccggcc atgaagcggc
     1861 atgtcgaaat cgaggtccgg ccgtgccgtc atgcccagcc ggcgcatcag cccccagctg
     1921 ggggcatttt cggtcagcgt gatcgcatag acctggtcga gcccaaaccg gccgaaggcg
     1981 aggtccagcg ccgccgtggc tgcttccttg gcatagccct gcccccaggc gccctcgcgc
     2041 aagcgccagc cgatttccgg cgcgccctgc attgccgccg gcgcgccgtc cgcattcagc
     2101 ggcttcagcc cgcaaaagcc caggaacgcg ccgtcggacc gcccctcaag ggcccagaag
     2161 caaaatccat tctcggcctc gcattgccgc atgcgcgcga tggctgcctc gatctcctcc
     2221 cggctctgca ggccgcccag gtagcgggtt accgcaggcg tgttgcacgc ggcttcgaaa
     2281 gcctcgacgt cgctatcgca ccagctccgc agcaccagcc tttcggttgc atgcgcaaag
     2341 ctcatcgcca ttccttcacg agcggcagca ccgaggcata atcgtcggtc cagccggaaa
     2401 agccgggccg ctcgtgcagc gcttcccatt tgccgccggg cggggggctg gcggtgacgc
     2461 gctgcagtac cgaaggatcg cgcgtcagca gaacccagct cgagttcgat gcgtaacgcg
     2521 cggctttcga ccttggcggg agaacatcgt catagcgcgc gccgacccag ccgccctccc
     2581 gcgccgcggc agccaggacc ggccccagat cgaaaaagcg gttcgagata tggaccagca
     2641 gcatgccttc ccgatcgagt acccgaccat aaatggcgaa agcctctcgg gtcagcaggt
     2701 gcatcgggat cgcgtcggac gaaaaggcat ccagtgcgag aaagtcgagg ctgcccgtgg
     2761 gcatcgtcgc aagggacagg cgcgcatcgc ctaccacgat cttcacatgc ggattgcagc
     2821 gggcgagaaa agtgaacttg ccggtctccc gcgcgatatg gacgaccgtc gggtcgattt
     2881 cgaaaacgcg ccagtcctga cccggccggg tatagcaagc gagcgttccg gccccgaggc
     2941 cgacgacgcc gacccgggca tcgcgtccgg cgacggcggg caggccctgc aaagcctggc
     3001 cgacacccga agacggcgtg taatagctgg tcagcacgcg ctcctgcccc ggcgtgagga
     3061 gctggacgcc atgcgaagtg gtgccgtggg caagtgtgcg gacatcgcca tcgtcccgga
     3121 tcgtatagat gccaaaatag ctccggtagc gttcgccgcg ggccgagcgt tcgagcgatt
     3181 cccagccgcc gaacaccaac accatcgcag caaggccgat gagataaggc ccgcgccggc
     3241 cgatgcagaa taatgtgatc agcccgatcg tagcggcgcc gaacatcgga ccatgcgcgt
     3301 agagccaggg ccagggccgc cggatcgcga gccatgcgat cccggccacg acgacggtgt
     3361 agcaaatggc gatggccagc cggcgggcgc gcccgccttg ccagagccgc tccgacgccc
     3421 agaacagata ggcttgcggg atcagcgcgc cagcgagcag gatcagcaac ggatgctcgt
     3481 aggtccagtc gaacagcaac ggcgcgacca aggccgagaa cacgccaccg agcgccccgc
     3541 cgatcgacat cgagagatac aaggacgtca gatagcgcgg cgccgggcgg gaggcataga
     3601 tctgcgcgtg gagcgtcacc gcgactgtaa acagcagcag cagctcggcc ccgatcgcga
     3661 gcagcggcgc gctcgtcgcg ttctggagcg aaagcccgcc catcgtcagc accaccaccg
     3721 gggagaggcg gcagatcgac gcgacgacgc tccggctttc cgcgaacgcg agggtgaagc
     3781 tcagcagata aaggctgagc ggtatcaccc agatcagcgg catcgccatg atgtcggtg
//
LOCUS       DASQVK010000215         4080 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_298723,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000215 DASQVK010000000
VERSION     DASQVK010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4080
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298723"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..653)
                     /locus_tag="VE567_04660"
     CDS             complement(<1..653)
                     /locus_tag="VE567_04660"
                     /inference="COORDINATES: protein motif:HMM:NF014732.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Wzz/FepE/Etk N-terminal domain-containing
                     protein"
                     /protein_id="HYZ48166.1"
                     /translation="MDSRVANTEALSRSASMFPSGLKPVDLLRVLRRRRTLILATVLA
                     ITGLATLIVLFVPPIYSATATLRVDDDDDAQVRPTDTAASIREAELRRQARISTLIEV
                     VRSRALAKTVALNLALHDDPEFSPAAAAERNANNPGLWHRFKRLVGLEAASVVKQRGK
                     RRAPPQHLTAEQMKVPVDRLLDQIDVAQDGQSNLVNVTARSSTPAKAQRIANKFAST"
     gene            951..2270
                     /locus_tag="VE567_04665"
     CDS             951..2270
                     /locus_tag="VE567_04665"
                     /inference="COORDINATES: protein motif:HMM:NF024832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HYZ48167.1"
                     /translation="MFRTVLANVAHLMSGSACAAAMGVLTLAILARSLGPASLGLLVM
                     VDAYGRVIDQLIRLETWQCIVRYGAAAVEERDGERLRRLIKFGLMMDLTGATCAAGVA
                     FVLVPVAARWLDWDATTMEWARIASLALLLRASSTPTGILQLFGRFPVIAWSDAIAAG
                     TRLVGTAAVWLLDGPIVAYLMLMIFTPGVQRVVLSVLSWRELKRRGYGRFLSVPLSGV
                     TKENEGVWSLIWSANGTVLVRKSTQELDALIVGSLLGPAALGDYHIARRLGQAIAKLG
                     ATLQQATFPELARAWTRRSLADFIRLIKQVELTTAAVGFVTLLIAALNAELIVRLVAG
                     RDFSDAVTPLVIQMCAVFLFLCGSTLRPALMSMGLQLQMFAAVAASAIIFYIVMLVAV
                     PRLGIAGASLAHLAFNATWLPVAAWAFARGLRNASQARQAHPDPVRA"
     gene            complement(2170..2901)
                     /locus_tag="VE567_04670"
     CDS             complement(2170..2901)
                     /locus_tag="VE567_04670"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYZ48168.1"
                     /translation="MRNAICVSILGCNEIVREGLKRILIDQEFNVYQAVADPAQLKTF
                     DVEASENHLIIIDVSNVSEAAANCVELRQRYPSAHIVLMVDDYSLEDVALAFGAGVDG
                     YLVKAISCEPLGGALRLIAMGEKVYPAQMAEALADHCWKSTGMNWKRRTADLNLSCRE
                     IEILRCLVDGQANKVISRRLNITEATVKVHIKATLRKLRVVNRTQAAIWAVTRGLDRD
                     EPAEPAMRFAGPEQKPMPLQVAMSH"
     gene            complement(3094..>4080)
                     /locus_tag="VE567_04675"
     CDS             complement(3094..>4080)
                     /locus_tag="VE567_04675"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYZ48169.1"
                     /translation="ERVSFVRFGLAASAAGPLRQLGRSLRRLRALRSTIRRLRPDIVI
                     SFLTKVNVLTLLATRGLAIPVIVSERNNPRRQAANPAWNMAIAALYPQADAIVMQSEA
                     SLACLPRRTRHKAVVIPNPIATRPSCARPAESRVIAAVGRLCAQKGFDLLLPAFARAA
                     ADHPEWQLVIWGEGPDRAALAAQIQSLGLDGRVEMPGLSRDPGGWVEGTGLFVLSSRY
                     EGFPNALGEAMQAGLPVIAFDCDFGPAGMLSHEVDGLLVPAENIEALAAALERLMLDP
                     ALRSRLGMAARGSSARFDPLRIIEQWSKTIGSIPAIGGCFKIDPIRAASQTH"
BASE COUNT          735 a         1238 c         1313 g          794 t
ORIGIN      
        1 taggtgctcg cgaatttgtt ggcgatgcgt tgcgctttcg caggagtgct ggaccttgcc
       61 gtcacgttga ccaggttgga ctggccgtcc tgggccacgt cgatctgatc caacagccgg
      121 tccaccggca ctttcatttg ctccgcggtc aaatgctgag ggggtgcccg ccttttcccg
      181 cgttgtttca cgacggacgc ggcctcaagg ccgaccagcc gcttgaacct gtgccagaga
      241 ccaggattgt tggcgtttcg ctccgcggcg gcggcgggcg agaattccgg atcgtcgtgt
      301 aaggcaaggt tgagcgcgac ggtcttcgca agagcccgag atctcaccac ctcgatcagg
      361 gtcgagatcc ttgcctggcg gcggagttct gcctccctta tcgacgccgc agtgtccgtg
      421 gggcggactt gcgcatcgtc atcgtcgtcg acacggagag tcgccgtcgc ggaatagatc
      481 ggagggacga acaggacgat cagggtagcc agccccgtga ttgccagcac ggtagcaagg
      541 atcagcgtcc gtcgcctcct cagcacccgg agcaggtcga cgggcttcaa accggacgga
      601 aacatgctgg cggatcggct gagcgcttcc gtatttgcta cgcggctatc catgatcggc
      661 aacctttgta cgcaccggca gcaactctat gcgggctcgg gcgcaagacc gatcactaag
      721 acgagcatcg ggcgctgcat tggggttagg tgcagcctct ttcgaccaaa ggaagcatcg
      781 caatgctcca gtcgaggtat ttaccggatg gtcatggcgc ggcgcgaccc gcccgcccat
      841 aatccccgcg cccaaacatc gaagggaagt gggggatgga ccggtcaaga ggtctgaccg
      901 acgagaccgc ggccgcaact caccacccaa ggcatcggcg aacgcgatct gtgttccgta
      961 ctgttctggc caatgttgcg cacctgatga gcggctctgc ctgcgctgcc gccatgggcg
     1021 tgctgacgct agcgatcctg gcgcgctcgc tcggtcccgc ttcgctcggc ctgctggtca
     1081 tggtcgatgc ctatggccgc gtgatcgacc agctgatccg gctggaaacc tggcagtgca
     1141 tcgtccgcta cggcgccgct gcggtcgaag agagagatgg cgaaagactg cgccggctga
     1201 tcaaattcgg tcttatgatg gacctgaccg gagcgacctg tgccgcaggg gtggcttttg
     1261 ttctcgtccc cgttgccgcg cgatggctag attgggacgc caccacgatg gaatgggcgc
     1321 ggattgcgag cttggccctg ttgctccgcg cctcgtccac gccgacgggg attttgcagc
     1381 tcttcgggcg tttcccggtg atcgcttggt cggatgccat tgccgcggga acgcgcctcg
     1441 tcgggacggc cgccgtctgg ctgcttgacg gaccgatcgt cgcctatctg atgctgatga
     1501 tcttcacgcc gggggtgcag cgcgtcgttc tgtcggtgct gtcctggcgc gagctcaagc
     1561 gccgcggata cggacggttc ctaagcgtgc cgctctcggg cgtcacgaag gagaatgaag
     1621 gcgtgtggag cctaatctgg tcggcgaacg gtacggtgct ggtgcgaaag agcacccagg
     1681 aactcgacgc gctgatcgtc ggcagcctgc tcggccctgc cgcccttggc gactatcata
     1741 tcgcgcggcg attgggtcag gcgatagcga agctcggggc gacgctccag caggcaacct
     1801 tcccggaact tgcgcgcgca tggacgcgac gaagcctggc tgacttcatc aggctcatca
     1861 agcaggtgga gcttacgact gcggccgtcg gctttgtcac cctgctgatc gcagcgctga
     1921 acgccgagtt gatcgtcagg ctggtcgcag gacgcgattt cagcgacgcc gtaaccccgc
     1981 ttgtcatcca gatgtgcgcc gtgttcctgt tcctgtgcgg cagcacgctg cggccggcgt
     2041 tgatgtcgat gggcctgcag ctgcagatgt tcgccgcggt cgccgcctcg gcaatcatct
     2101 tctatatcgt catgctggta gcggtgccga ggcttggcat tgccggcgca agcctcgcgc
     2161 acctggcctt taatgcgaca tggctacctg tagcggcatg ggcttttgct cggggcctgc
     2221 gaaacgcatc gcaggctcgg caggctcatc ccgatccagt ccgcgcgtaa ccgcccagat
     2281 cgccgcctgg gtccgattga ccacgcggag cttgcgcaag gtggccttga tatgaacctt
     2341 gacggtcgcc tcggtgatgt tgaggcggcg agagatcacc ttgttggcct ggccatccac
     2401 gagacagcgc aggatttcaa tctccctgca cgacaagttc agatccgccg tccgtcgctt
     2461 ccagttcatg ccggtcgatt tccagcagtg atcggcaagc gcttccgcca tctgggcggg
     2521 gtagaccttc tcgcccatcg cgatcaggcg aagggcgccg cccagcggtt cgcacgaaat
     2581 ggccttgacg agatacccgt cgacgccggc tccaaaggcg agcgcgacat cttcaaggga
     2641 ataatcgtcg accatcagca cgatgtgagc cgacgggtag cgttgccgca gctccacgca
     2701 gttggctgct gcctcggaca cgttgctaac atcaatgatt atgaggtggt tttcacttgc
     2761 ttccacatcg aacgtcttaa gctgggccgg atcggcgaca gcttgataga cattaaactc
     2821 ctgatcgatg aggatgcgtt tcagcccttc ccgaacgatt tcattgcatc cgagaattga
     2881 gacacagatg gcgtttcgca caggcgtctc cccctattag tgtccaacag gacagatagt
     2941 ttagactaac tggcgacccc ttttggttct ataacctaga tcttcccgtc ttttgcgcga
     3001 gggagtgatc caggttgcga ttcactggta tcaaaaaaaa gcaacaaagt gaacaaaggt
     3061 tgcacggtgc accaaaagag ggtgaccttt tggtcagtgc gtttgggaag cggccctgat
     3121 cggatcgatt ttaaagcagc cgccaatggc cggaatgctt ccgatcgtct tggaccattg
     3181 ctcgataatc cggagaggat caaatcgggc cgagctgccg cgcgccgcca tgccgagccg
     3241 tgatcggagc gccggatcga gcataagccg ctccagcgcg gcggccaaag cctcgatgtt
     3301 ttcggcgggg acgagcaggc cgtccacctc gtgcgatagc atcccggcgg gcccgaagtc
     3361 gcaatcgaag gcgatgacgg gcaggcctgc ctgcatggcc tcgcccaatg cgttcgggaa
     3421 accttcgtag cgcgacgaca ggacgaaaag gccggttccc tcgacccaac ctccgggatc
     3481 acggctgagg cccggcattt ccacgcgccc atccaggccg agactttgga tttgcgccgc
     3541 gagcgccgca cggtcaggac cttcccccca aatgaccagc tgccattcgg gatggtcggc
     3601 cgcggccctg gcaaaggcgg gcaacaggag gtcgaatcct ttttgcgcgc acagccgccc
     3661 gaccgccgcg atgacgcggg actcggcagg tcgggcgcag gaaggccgcg tagcgatggg
     3721 attgggaatc acgaccgcct tgtgccgcgt ccggcggggc aggcacgcga ggctggcctc
     3781 ggattgcatg acgatcgcgt cggcctgagg gtaaagcgca gcgattgcca tgttccaagc
     3841 cgggttggcg gcctggcgcc gggggttgtt tcgttcggag acgatgaccg ggatggctag
     3901 gccgcgcgtt gcgagcagcg tcagaacgtt gacctttgtc agaaacgaaa tgacgatatc
     3961 cgggcgaagc cgtctgatgg tcgagcgtag cgcccgcaag cgcctgaggc ttcggccgag
     4021 ctgccggagg gggcctgccg ccgatgccgc aagtccgaag cggacgaagg agaccctctc
//
LOCUS       DASQVK010000216         2448 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_330489,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000216 DASQVK010000000
VERSION     DASQVK010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2448)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2448)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2448
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330489"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1383
                     /locus_tag="VE567_04680"
     CDS             <1..1383
                     /locus_tag="VE567_04680"
                     /inference="COORDINATES: protein motif:HMM:NF015366.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter
                     substrate-binding protein"
                     /protein_id="HYZ48170.1"
                     /translation="LRRLILSLGLISLSLANPAQATPTADHLTLVVPGAPGGGWDITA
                     KSIQHALECEGLVGSVSIVRYPGTGGLVGLTEFVNRHRGDGNILLVGGLSMLGAAIAD
                     SASVSLRDVKPIARLTGDWGVIAVRRDSPIRTLDDLKFAMRTRSNALRWSGGSVGSPD
                     QALVWEIAERLHVPVDDVLYYGKVSGRSASESLLAGRSEIAVSGYAEFAPYLESGDFR
                     AIAVDAPKRMAGLDVPTLREGGIDVSLMNWRGVFAAPSLTIAQQKKLEVIVAAMRETR
                     TWRAGLHQSRWYDAYLDAEAFSQFIDRETARWPGLINPPLRSGDDIIVSEGGPASHPA
                     FWLLASLVLSLAGWACNLIHQLRQRRRHEADLQSRNRDLWKKLTEFEGTKGQFVRHGI
                     EEDFNAWELSTAERDVAWFMLRGLPLREIATLRGTSERTVRQQAQSIYRKADLESRSD
                     LAGRVLERFI"
     gene            complement(1614..>2448)
                     /locus_tag="VE567_04685"
     CDS             complement(1614..>2448)
                     /locus_tag="VE567_04685"
                     /inference="COORDINATES: protein motif:HMM:TIGR00784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015137 - citrate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015746 - citrate transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="citrate:proton symporter"
                     /protein_id="HYZ48171.1"
                     /translation="VLKLDANDVFVPLLPAMAATAAWVMFVAYRFGLEERARLKGLSH
                     HTVLEDANACEILREDEEHHLEARAPHLFWFNVLLTLALLVGLILGVLPLPVLFMLGF
                     AVALVVNYPSIDQQRERIGAHAGNALAVGGLVFAAGIFTGILSGTKMVDAMAATVTGT
                     VPPAWGPWLAPITALLSAPFTFVISNDAFYYGMLPVLAQTAAAYGITPAEIGRASLVG
                     QQVHLLSPLVASTYLLVGFVGIEFGEHQRFTLKWALGSFVVFFAAALLFGVFPLIGMG
                     R"
BASE COUNT          462 a          790 c          779 g          417 t
ORIGIN      
        1 ctccgccggc tgatcctgtc attgggcctt atcagcctgt cgctcgcaaa ccccgctcaa
       61 gcgaccccga cggccgacca tttgaccctg gtcgttcccg gggctcccgg cggcggctgg
      121 gatattacag ccaagtcaat ccaacatgcg ctagaatgcg aagggttggt cgggtcggtc
      181 agcatcgtcc gctatcccgg caccgggggc ctggtcggcc tgacggagtt cgtgaaccgg
      241 catcggggcg acggcaatat cctgttggtc ggcggcctct ccatgttggg cgcggcgatc
      301 gccgattccg cctcggtcag cctgcgcgac gtcaagccga tcgcgcgcct gaccggcgac
      361 tggggagtga tcgccgtccg cagggactcg ccgatccgca cgcttgacga tctcaaattt
      421 gcgatgagga cacggtccaa cgctcttcgc tggtccggcg ggtcagtcgg cagccctgac
      481 caggcattgg tctgggaaat agccgaacgg cttcatgtcc cggtcgacga tgtcctctat
      541 tacggcaagg tcagcgggcg cagcgcatcg gagagcctgc tcgccggccg cagcgaaatt
      601 gcggtcagtg gctatgccga gttcgcgccc tacctggaga gcggggactt ccgcgccatc
      661 gccgttgacg cgcccaagcg tatggccggc ctggatgttc cgaccttgcg ggaaggcggc
      721 atcgacgtgt cgctgatgaa ttggcgcggg gtctttgctg ctcccagtct tacaatcgcg
      781 caacagaaaa agctggaagt gatcgtcgcc gcgatgcggg agacccggac ctggcgggcc
      841 ggcctgcatc aatcccggtg gtacgatgcc tatctcgatg ccgaagcttt ctcgcagttc
      901 atcgatcgcg agacggcccg ctggcccggg ctgatcaacc cgccgctgcg gtcgggcgat
      961 gacataattg tctccgaggg cggaccggcc agccatccgg cattctggct gctcgcaagc
     1021 ctagtcctga gtctcgccgg ctgggcttgc aacctcattc accagctccg tcaacggcgg
     1081 cggcacgagg cagacctcca gtcacgcaac cgggacctgt ggaaaaagct taccgagttc
     1141 gagggtacga aggggcagtt cgtacgccac ggcatcgagg aagatttcaa tgcgtgggaa
     1201 ttgtcgactg cggaacgcga cgtggcttgg ttcatgctcc gcggactgcc gctgagggaa
     1261 atcgcgacgc tccgcggtac cagcgagcgt accgttcgcc agcaggcgca gtcgatctac
     1321 cgcaaggccg atctcgaaag caggtccgac ttggcaggcc gcgtgctcga gcgtttcatc
     1381 tagacggcga atcggcgatc attgccgtat gataatgcgc ttagaccgtt tcgcatgatc
     1441 aaggtcacga gcaacttcgc aaagcttcaa tcggctgacg atccgggccc tctccccgta
     1501 ttttcagtgc ggccgcttgg cgcggccctt cccgatagct ccggccccgg tcgccgcgaa
     1561 tccgtcgaac gggacggaac atgggtccga tggcgtatca gcgccgcgac acttcagcgg
     1621 cccatcccga tgagcgggaa aaccccgaat aacagcgctg ccgcgaagaa aacgacgaac
     1681 gatcccagcg cccatttgag agtgaagcgc tgatgctcgc cgaactcgat gccgacgaat
     1741 ccgaccagca agtaggtgga ggcgaccagc gggctcagca gatggacctg ctgtccgacc
     1801 agcgacgcgc ggccgatttc cgccggcgtg atgccgtagg ccgcggcggt ctgcgccagc
     1861 accggcagca tgccatagta aaaggcgtcg ttcgaaatca cgaaggtgaa gggagcgctc
     1921 agcagcgccg tgatcggcgc cagccatggc ccccaggccg gcgggaccgt gcccgtcacg
     1981 gtcgccgcca tcgcatcgac catcttcgtt cccgaaagga tgccggtgaa gattccggcg
     2041 gcgaacacca gtccgccgac ggccagagca ttgccggcat gcgcgccgat ccgctctcgc
     2101 tgctgatcga tgctcggata attcacgact agcgcgaccg cgaagccgag catgaagagc
     2161 acgggtagcg gcaggacacc caggatcagc ccgacaagta acgccagggt cagcagcacg
     2221 ttgaaccaga acagatgggg ggcgcgcgct tccaggtgat gctcctcgtc ctcgcgcagg
     2281 atctcgcagg cgttggcgtc ttcgagcacc gtatgatgcg ataagccttt gagccgggcg
     2341 cgctcctcca gcccgaaacg ataggccaca aacatcaccc aggccgcggt ggcggccatc
     2401 gccggcaaca gcggcacgaa cacgtcgttc gcgtccagct taagcacg
//
LOCUS       DASQVK010000217         3044 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_235395,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000217 DASQVK010000000
VERSION     DASQVK010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3044
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235395"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            11..475
                     /locus_tag="VE567_04690"
     CDS             11..475
                     /locus_tag="VE567_04690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010335502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system Fe-S cluster assembly protein"
                     /protein_id="HYZ48172.1"
                     /translation="MNEQSRISVEEVEGVTPPPRARVEDAREGFERKKDYLAGFLSEK
                     PAELSGHEPGGELYEAVIQALKEIYDPEIPVNIYDLGLIYGVDITGDGHTVVTMTLTT
                     PHCPVAESMPGEVELRVGAVPGIGDVEVNLVWDPPWNPAQMSDEAKLELGML"
     gene            475..831
                     /locus_tag="VE567_04695"
     CDS             475..831
                     /locus_tag="VE567_04695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007404566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HYZ48173.1"
                     /translation="MATVTTRERPKALNLTPTAEARIAALMAQAPDGAVGVKLSTPRR
                     GCSGLAYSVDYVTEAKPFDERIETPGGTLFVDGGSILYLIGSTMDWVEDDFTAGFVFQ
                     NPNAKGSCGCGESFTV"
     gene            complement(874..2574)
                     /locus_tag="VE567_04700"
     CDS             complement(874..2574)
                     /locus_tag="VE567_04700"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HYZ48174.1"
                     /translation="MSLGGSGADATLRAAIGRATAAGMVIVISAGNDGASNPSDLALI
                     ATDTVARNQVIVAGALEADKTLASFSNRAGVAANIYVTALGNGVRSFNQDGQAFLYGG
                     TSFSAPFVSGAAALLAQAFPNLTGAQIVQLLLDSADDLGAAGTDTTYGRGALNIGRAF
                     QPRGGASLAGSQVAVNLNTTTASLSPAMGDAAQKGMGAVILDGFSRAYAVDFARSIRS
                     AQPQSSLAGTLTRSYRGASLAAGGTMVAVSIAEAPGGIALKQLSLREGDAVRARATAG
                     MVASRIDPKTSMAFGFGQSGASVAGQLTGAGEPAFLVARGSGDLLGFDRTNQRAASMR
                     RQFGRIGLTASAESGEGLLWQGTPGARDPYARSPYNLMSVSADRRFGGLRLNGGLTRL
                     TEDRSLLGAHFGPLFGAGGSATWFADLRADWRLGAGWSLAAAARQGWTSMAAGGLLSG
                     SSTIRSNAFSLDIAKAGLLDRGDQFGFRIAQPLRVASGGLSLRLPASYDYKTGAVSYA
                     DQSLNLSPTGREIDMEASYSRLLFGGRMDTNLFWRRDPGNFAAAPDDLGAALRWRVEF
                     "
     gene            complement(2477..>3044)
                     /locus_tag="VE567_04705"
     CDS             complement(2477..>3044)
                     /locus_tag="VE567_04705"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HYZ48175.1"
                     /translation="PSPAASPTPTPIPAPTPTPTIDYRTPEYSRSTGLELANAVPAYQ
                     AGATGAGVTAAVIDSGVNPGLQEFAGRISSASQDLSGSRGLGDHGGHGTAVSGVLLAA
                     KNDNGIHGMAFDATLLALRTDTPGSCTSTGGCSHTDSAIAHALDVAVAQRARREYLPG
                     RLGRRCDATRRNRARHGSRHGDRYLRRQ"
BASE COUNT          502 a         1001 c         1079 g          462 t
ORIGIN      
        1 ggattttcgg atgaacgagc agagccggat cagcgtggaa gaagtggagg gcgtcacgcc
       61 gccgccccgc gcgcgcgtcg aggatgcgcg ggagggtttc gagcgcaaga aggattatct
      121 cgctggcttc ctcagcgaga agccggccga gctgtcgggc catgagccgg gcggcgagct
      181 ctatgaggca gtgatacagg cgctgaagga aatctacgac cccgaaatcc cggtgaacat
      241 ttacgatctg ggcctgatct acggcgtcga catcacgggc gatggccata ccgtcgtcac
      301 gatgacgctg acgacgccgc actgcccggt cgccgagtcg atgccgggcg aagtcgagct
      361 tcgggtcggc gccgtgccgg gcatcggcga tgtcgaagtg aatcttgtct gggatccgcc
      421 ctggaacccc gcgcagatgt cggacgaggc gaaactggaa ctgggaatgc tttgatggcg
      481 acggtgacca cccgcgagcg ccccaaggcg ctgaacctga cccccaccgc cgaggcgcgg
      541 atcgcggcgc tgatggcgca ggcgcccgac ggtgcggtcg gggtcaagct ctcgaccccg
      601 cggcgcggct gctcggggct cgcttattca gtcgattatg tgaccgaggc gaagccgttc
      661 gacgagcgga tcgagacgcc cggcggcacg ctcttcgtcg acggcggctc gatcctgtat
      721 ttgatcggct cgaccatgga ttgggtcgag gacgatttca ccgccggctt cgtcttccag
      781 aaccccaatg cgaagggcag ctgcggctgc ggcgagagct tcacggttta ggccagaccg
      841 tcatcccgga cttggtccgg gatgacgctt ccgtcagaat tccacccgcc agcgtagcgc
      901 ggcgccgaga tcgtcgggcg ccgccgcgaa gttgcccggg tcgcgccgcc agaacaggtt
      961 agtgtccatc cgcccgccaa agagcagccg cgaatagctc gcttccatat cgatctcgcg
     1021 gccggtcggc gagaggttca gcgactggtc ggcatagctc accgcgcccg tcttgtagtc
     1081 ataggaggcc ggcaggcgca gactgaggcc cccgctcgcc acgcgcagcg gctgggcgat
     1141 gcggaagccg aactggtcgc cccgatcgag caggcctgcc ttggcgatat ccaggctgaa
     1201 cgcattgctg cggatcgtgg agctgcctga aagcagtccg cccgcggcca tgctggtcca
     1261 gccttggcga gcggctgcgg ccaatgacca gccggcgccc aggcgccaat cggcgcgcag
     1321 gtccgcgaac caggtcgccg aaccgccggc gccgaacagc ggcccgaaat gcgcgccgag
     1381 caagctgcgg tcctcggtca gccgcgtaag gcccccgttc agccgcaagc caccgaagcg
     1441 gcgatcggcc gaaacgctca tcagattata gggcgagcgg gcatagggat cgcgcgcgcc
     1501 tggcgtgcct tgccaaagca gcccctcgcc gctttcggcc gaagccgtca ggccgatccg
     1561 gccgaactgg cgacgcatgg aggcggcgcg ctggttggtg cgatcgaacc ccagcaaatc
     1621 accggagccg cgcgcgacca ggaaagcggg ctcgccggca ccggtgagct ggccggcaac
     1681 gctcgccccg ctctggccga agccgaacgc catgctggtc ttggggtcga tccggctcgc
     1741 caccatgccg gcggtcgcgc gagcgcggac cgcgtcgccc tctctcagcg acaattgctt
     1801 cagcgcaatg ccgccaggcg cttccgcgat cgagaccgcc accatcgtgc ctccggccgc
     1861 aagcgaggcg ccccggtagg aacgcgtgag cgtgcccgcc aggctcgatt gcggctgggc
     1921 gctgcggatc gagcgggcga agtcgacagc gtacgcgcgg ctgaagccgt cgaggatgac
     1981 agcgcccata cccttttgcg cggcgtcgcc catcgccggc gacaggctgg cggtggtcgt
     2041 gttgagattc accgccactt gcgagccggc aagcgaggcg ccgccgcgcg gctggaaggc
     2101 gcggccgatg ttcagggcgc cgcggccgta ggtcgtatcg gtgccggcag cgcccagatc
     2161 gtcggcgctg tcgagcagca actggacgat ctgcgcgccg gtcaggttcg ggaacgcctg
     2221 cgcgagcagc gccgctgctc ccgagacgaa cggcgcggag aatgacgtgc cgccgtaaag
     2281 aaacgcctgt ccgtcctggt tgaaggagcg gacgccattt ccaagtgccg tcacatagat
     2341 attggccgcc acgccggcgc ggttcgagaa gctggccagc gttttgtccg cttccagcgc
     2401 gccagccacg attacttggt tgcgcgccac cgtatcggtc gcgatcaggg cgaggtcgct
     2461 cggattggag gcgccgtcat tgccggcgga gataacgatc accatgccgg ctgccgtggc
     2521 gcgcccgatt gcggcgcgta gcgtcgcatc ggcgcccgag ccgcccaggg agatattcgc
     2581 gacgcgcgcg ctgcgctacc gcgacgtcga gtgcgtgagc gatcgcgcta tcggtgtgcg
     2641 aacatccacc cgtgctggtg cagctgccgg gcgtgtcagt gcggagcgca agcaacgtcg
     2701 cgtcaaacgc catgccgtga atgccgttgt cgttcttggc ggcgagcagc acgccggaga
     2761 cagccgttcc atgcccgcca tggtcgccaa gtccgcgcga gccggaaaga tcctgggagg
     2821 ccgacgaaat gcgccccgcg aattcctgga ggccgggatt gacgccgctg tcgatcaccg
     2881 cggccgtgac gccggcgccg gtggcgcccg cctgataggc ggggacggcg ttggcgagct
     2941 cgaggccggt cgagcggcta tactccggcg tgcggtaatc gattgtcggc gtaggtgtcg
     3001 gggcgggaat cggggtcggc gtcggactcg cagccgggct cggt
//
LOCUS       DASQVK010000218         7053 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_203991,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000218 DASQVK010000000
VERSION     DASQVK010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 7053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7053
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203991"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(109..978)
                     /locus_tag="VE567_04710"
     CDS             complement(109..978)
                     /locus_tag="VE567_04710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HYZ48176.1"
                     /translation="MNAVGVIGAGQMGAGIAQVSAQSGYKVFLADISLELAEKSKAGI
                     ASQLDRLVAKEKLAADARDAALALIEPVADYAPMTEAGLIVEAATENEAIKRKIFEAA
                     GAVLAKDAVLASNTSSIPITRLAQASPDPARFIGVHFFNPVPVMGLIEVIRGLATSDE
                     TVTKVQDYGKKLGKRIVHANDAPGFIVSRVLMPMLNEACFALGEGVASIPDIDAACQL
                     GLNHPMGPLTLADFIGLDTCLSIAKVLHEGTGDPKFRPAPLLAKYVEAGWLGRKTGRG
                     FYDYSGEEPAPTR"
     gene            complement(1092..2054)
                     /gene="egtD"
                     /locus_tag="VE567_04715"
     CDS             complement(1092..2054)
                     /gene="egtD"
                     /locus_tag="VE567_04715"
                     /EC_number="2.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030745 - dimethylhistidine
                     N-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-histidine N(alpha)-methyltransferase"
                     /protein_id="HYZ48177.1"
                     /translation="MNLVAATRVDPAFRADVLTGFRMRPRAIPARWFYDRAGSELFEK
                     ITELPEYYPTRVETALLARYAPEIAAIVGPRRAVVEFGSGSSTKTPHVLEAVQPAAYV
                     PIDISGEFLRESAAALASDFPKLSILPVEADFMHPIVAPPEIANLKKLGFFPGSTIGN
                     MVARTAVNLLRAMVETLGIGSMLLIGIDRIKDVDALIRAYDDQAGVTAAFNLNLLHRI
                     NRELDADIPINAFRHKAVWNDAFARIEMHLEATRDIAFRIDGERFEMRAGETIHTENS
                     HKYGPRDARLLLRAGAWTPLAEWTDEEDRFALILAEAQPPGTAP"
     gene            complement(2051..3286)
                     /gene="egtB"
                     /locus_tag="VE567_04720"
     CDS             complement(2051..3286)
                     /gene="egtB"
                     /locus_tag="VE567_04720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004210152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ergothioneine biosynthesis protein EgtB"
                     /protein_id="HYZ48178.1"
                     /translation="MTPFAHLGPETPALFEQVRALSLALAAPLSDADATVQSMDDASP
                     AKWHLAHTTWFFETFVLRELPGYRAFDPAWAYLFNSYYEAEGPRHARPRRGMLTRPTL
                     DEAKAYRAHVDAALTQAWPHLDEAARTLVELGCHHEQQHQELLLTDILHLFAQNPLKP
                     ALWSALPVLPSPVPGPVQWIEGRSGLVETGHAGPGFAFDCEGPRHQLLLHPHALADRT
                     VTNGEWIAFIEDGGYREPRWWLSDGWAWVQREAVEAPFYWERDGQGWASFGLDGLKPV
                     DPTAPVTHISFYEADAYAAYVGARLPTEAEWESAAATLDPSEGQFLDTAGPVRPRGQG
                     LFGSVWEWTGSAYRPYPGFRPAEGAVGEYNGKFMSGQFVLRGGSCATPRGHVRASYRN
                     FFYPHQRWQFTGVRLARDL"
     gene            complement(3352..3921)
                     /locus_tag="VE567_04725"
     CDS             complement(3352..3921)
                     /locus_tag="VE567_04725"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010218806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HYZ48179.1"
                     /translation="MVKLNKIYTRTGDDGTTGLVDGSRVPKSAARMQLIGDVDEANSA
                     LGVAIAALAEDAIVPALKRIQNDLFDLGADFATPGEEFEPSDMVLRIVPAQVDRLEVE
                     IDAMNEGLEPLRSFILPGGTPAVAALHLARAVVRRAERSAVAAAGQMSLNPQALAYLN
                     RLSDHLFVAARLIASRSGGDVLWVPGASR"
     gene            complement(3926..4153)
                     /locus_tag="VE567_04730"
     CDS             complement(3926..4153)
                     /locus_tag="VE567_04730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48180.1"
                     /translation="MTIFLWLLLIATAIAAVAMLIRGIVTFLQTTEEDLKSQSTGPSA
                     SGLKQNRMMMGRIFFQAIAILIAALILLLSR"
     gene            complement(4162..5007)
                     /gene="gluQRS"
                     /locus_tag="VE567_04735"
     CDS             complement(4162..5007)
                     /gene="gluQRS"
                     /locus_tag="VE567_04735"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HYZ48181.1"
                     /translation="MDLSTTRFAPSPTGRLHLGHAMSAVLAHDFARARRGRFLLRIED
                     IDPGRAREEFVAGIEEDLHWLGLEWDGPVIRQSERLPLYAEALGRLKARGLVYPCFCT
                     RADIARSAAAPHGPEGALYPGTCRGLADPDLSLPHAWRLDVVKAMALSGPLAWHDARA
                     GTVAARPDLLGDVVLARKDAPTSYHLAVTVDDAAQGVSDVVRGRDLFLSTHVHRLLQA
                     LLGLPTPAYHHHALLVGADGARLAKRHGALSLADLRTQGVDPQAIVNAFRAGEAPLGF
                     RLSDA"
     gene            5108..5674
                     /locus_tag="VE567_04740"
     CDS             5108..5674
                     /locus_tag="VE567_04740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009822703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HYZ48182.1"
                     /translation="MYHPDLIRHPDSCPALVLNADYTPLSYYPLSLWPWQTAIKAVFL
                     DRVDIVESYEKEVRSPTSAMKLPSVIALKQYVKPSQHPAFTRFNLFLRDRFTCQYCGT
                     SRDLTFDHVVPRAYGGRTTWENVSTACAPCNLKKGGRTPAEAHMALFEQPYRPTSWQL
                     QDHGRAFPPNYLHDTWRDWLYWDVELQA"
     gene            complement(5833..6312)
                     /locus_tag="VE567_04745"
     CDS             complement(5833..6312)
                     /locus_tag="VE567_04745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007707305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3035 domain-containing protein"
                     /protein_id="HYZ48183.1"
                     /translation="MRNVIVLGLVGLTLAGCGGSGLNRTRPDEFAVARRAPLVVPPDF
                     ALKPPSPGAPRPQEADSSTQALQAMFGGPAPRSAPEQAALNQAGAARAQPGIRSEVGS
                     PQTNAVDKGAVTRDIIAAPEGDGQDARAGTAAATPAPAPSSTPAPSPSPSPSPTPQS"
     gene            complement(6305..6808)
                     /gene="lspA"
                     /locus_tag="VE567_04750"
     CDS             complement(6305..6808)
                     /gene="lspA"
                     /locus_tag="VE567_04750"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016744475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HYZ48184.1"
                     /translation="MTATRRLGLLIAAVIFILDQLVKWVVTGPLGLMRVGSIELLPIF
                     RFYFVPNHGVSMGFLTAGSETQRWALVAVTAAIGTGVLVWLWRETSRADVAALGLVLG
                     GAIGNILDRVRFGYVVDFLDLHFGEFRPFLVFNVADAAITIGVLILLGRALFMRPRSE
                     PAEKLNA"
     gene            complement(6837..>7053)
                     /locus_tag="VE567_04755"
     CDS             complement(6837..>7053)
                     /locus_tag="VE567_04755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010218772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="zinc finger domain-containing protein"
                     /protein_id="HYZ48185.1"
                     /translation="VVGSSLEAEVTVPAPPDDNLEELFIVAKVSPGDTIAVTRTGYHK
                     CGRCWRHLPEVREDGTLCDRCSEVVSG"
BASE COUNT         1184 a         2272 c         2431 g         1166 t
ORIGIN      
        1 gcggacatga tcacgacggc ataatcggca aggttggaca ggcgcatggc tcaatcggac
       61 tgatctagtc cgattgcatg tggtcgctca gagagcgccc gtcaagcgct agcgcgtggg
      121 cgccggctcc tcgccggaat agtcgtagaa gccgcggccg gtcttccgcc caagccagcc
      181 ggcctcgaca tatttggcga gcagcggtgc ggggcggaat tttgggtcgc cggtgccttc
      241 gtgcagcact ttggcgatcg acaggcaggt gtcgagcccg atgaagtcgg cgagcgtgag
      301 cggccccatc gggtggttga ggccgagctg gcaggcggcg tcgatgtcgg ggatgctcgc
      361 cacgccttcg ccgagcgcga agcaggcttc gttcaacatc ggcatcagca cccggctgac
      421 gatgaagccg ggggcgtcgt tcgcgtgcac gatgcgcttg ccgagcttct ttccataatc
      481 ctgcaccttg gtgaccgtct cgtccgatgt ggcgagaccg cggatcactt cgatcaggcc
      541 catgaccggc acggggttga agaaatgaac gccgatgaag cgggcggggt cgggcgaggc
      601 ctgggcgagg cgcgtgatcg ggatcgagga tgtgttggag gcaagcaccg catccttcgc
      661 cagcaccgcg ccggccgcct cgaaaatctt gcgcttgatc gcttcgttct cggtcgccgc
      721 ttcgacgatc agtccggctt cagtcatcgg cgcatagtcg gcgacaggct cgatcagcgc
      781 gagcgcggcg tcgcgggcgt cggcggcgag cttttccttg gcgacgagcc ggtcgagttg
      841 actggcgatg cctgccttcg atttctcggc cagctccagc gagatgtccg ccaggaacac
      901 cttgtagccc gactgggccg agacctgcgc gatccccgcg cccatctgcc cggcgccgat
      961 cactccgact gcgttcattc ttgtctcccg tcctcctgaa cttggttcag gacaagcttc
     1021 ccgtcccgcc gcgcttgtca cgacgcttgt gccgaaacaa gttcggcatg accgagggcg
     1081 ctacgatgtc gttagggagc cgtccccggg ggttgggctt cggcgaggat cagggcgaag
     1141 cggtcttctt cgtcggtcca ttcggcgagt ggggtccagg cgccggcgcg gagcagcagg
     1201 cgggcgtcgc gggggccgta tttgtggctg ttttcggtgt ggatcgtctc gccggcgcgc
     1261 atttcgaagc gttcgccgtc gatcctgaag gcgatgtccc gggtcgcctc cagatgcatt
     1321 tcgatccgcg caaaggcgtc gttccacacc gccttgtggc ggaaggcatt gatcggaatg
     1381 tcggcgtcga gctcgcggtt gatgcggtgg aggaggttga gattgaacgc tgccgtcacg
     1441 ccggcctgat cgtcataggc gcggatcagc gcgtccacgt ccttgatccg gtcgatgccg
     1501 atcagcagca tcgagccgat acccagggtc tccaccatcg cgcgcagcag attgaccgcc
     1561 gtgcgggcga ccatgttgcc gatcgtcgag ccggggaaga agccgagctt cttcaggttc
     1621 gcgatctcgg gcggggcgac gatcgggtgc atgaaatccg cctcgaccgg caggatcgag
     1681 agcttgggga aatccgaggc gagcgccgcc gccgattccc gcaggaactc gcccgaaatg
     1741 tcgatcggca cataggcggc gggctggacc gcctccagca cgtgcggcgt cttggtcgag
     1801 gagcccgagc cgaactcgac caccgcgcgg cgcgggccga cgatcgccgc gatttccggc
     1861 gcgtagcggg cgaggagcgc cgtctcgacg cgagtcggat aatattccgg cagctcggtg
     1921 atcttctcga acagctcgga tcccgcgcgg tcgtaaaacc agcgcgccgg aatcgcgcgc
     1981 ggtcgcatgc ggaagccggt cagtacatcg gcgcggaaag cagggtcgac ccgcgttgcg
     2041 gcaaccaggt tcataggtcc ctcgccaggc gaacgccggt gaactgccag cgctgatggg
     2101 ggtagaagaa gttccggtag ctggcgcgga catggccgcg gggcgtggcg caggagccgc
     2161 ctcgcagcac gaactgcccg ctcatgaact tgccattata ttcgccgacc gcgccttcgg
     2221 ccggcctgaa gccgggatag gggcggtagg cgctgccggt ccattcccag accgagccga
     2281 acaggccttg gccccgcggc cggaccgggc cggccgtatc gaggaactgt ccttcgctcg
     2341 ggtcgagcgt cgcagccgcg ctttcccatt cggcctcggt cggcaaccgc gcgccaacgt
     2401 aagcggcata ggcgtcggct tcgtagaagc tgatgtgcgt gaccggggcg gtggggtcga
     2461 ccggcttcaa tccgtcgagc ccgaagctcg cccagccttg gccgtcgcgc tcccaataaa
     2521 agggggcttc gacggcttcg cgctggaccc aggcccagcc atcggagagc caccagcgcg
     2581 gctcgcgata gccgccatcc tcgatgaagg cgatccactc gccgttcgtg acggtccggt
     2641 cggcgagcgc atgagggtgg agcagaagct ggtggcgcgg tccttcgcag tcgaacgcaa
     2701 agccggggcc ggcatggccg gtctcgacca gccctgatcg accctcgatc cattggacgg
     2761 ggccgggaac aggtgatggc aggacgggca gtgcggacca gagcgccggc ttcaacgggt
     2821 tctgcgcgaa caggtggaga atgtcggtga gcagcaattc ctggtgctgc tgctcgtgat
     2881 ggcagccaag ctcgaccagc gtgcgcgccg cttcgtccag gtgcggccag gcctgggtga
     2941 gcgcggcgtc gacgtgagca cgataggctt tcgcttcgtc gagcgtcggg cgggtaagca
     3001 tgccgcgcct cgggcgagcg tggcgcggtc cctcggcctc gtaatagctg ttgaacagat
     3061 aggcccaggc cggatcgaag gcgcgatagc cgggcagctc gcgcaacacg aaggtttcga
     3121 agaaccacgt cgtgtgcgcc agatgccatt tggcggggga agcatcgtcc atcgactgga
     3181 cggtcgcgtc ggcgtcggac aggggcgcgg caagcgccaa actcagcgcg cgcacctgct
     3241 cgaacagcgc cggcgtctcg ggccccagat gcgcaaacgg cgtcatcggc gctgatatag
     3301 gtgatttatg cggctgtgtc gttacgccgt tcgtctattg tttcgctgca ttcagcgcga
     3361 ggcgccgggc acccacagca cgtcgccgcc cgaacggctg gcgatcagcc gtgccgcgac
     3421 gaagagatgg tcggacaggc gattgagata agcgagcgct tgcgggttga ggctcatctg
     3481 gccggcggcg gcgaccgcgc tgcgctcggc ccggcgcacc acggcgcggg ccaggtgcag
     3541 ggccgcgact gcgggcgtcc cacccggcag aatgaaggag cgcagcggct ccagcccttc
     3601 attcatcgcg tcgatctcga cttcgagtcg atcgacctgc gcggggacga tgcgcagcac
     3661 catgtccgac ggctcgaatt cctcgcccgg cgtggcgaag tcggcgccca gatcgaacaa
     3721 gtcgttctgg atgcgcttca gcgccggcac gattgcatcc tcggccagcg ccgcgatcgc
     3781 gacgccgagc gcgctgttcg cctcgtcgac atcgccgatc agctgcatcc gtgctgcgct
     3841 tttcggcacg cgcgagccgt cgacgaggcc ggtcgtgccg tcgtcgccag tgcgcgtgta
     3901 aatcttgttg agcttgacca atcgcctagc gcgacagcag caggatcagc gcggcgatca
     3961 ggatcgcgat cgcctggaag aagatgcggc ccatcatcat ccggttctgc ttcaggcccg
     4021 aagcgctcgg ccccgtgctt tgcgacttca ggtcctcctc ggtcgtctgc aggaaagtga
     4081 cgatgccgcg gatcagcatg gccaccgccg cgatcgcggt ggcgataagc aggagccaga
     4141 ggaaaatggt catagcctaa tctacgcgtc cgaaaggcgg aatccaagcg gcgcttcgcc
     4201 ggcgcggaag gcgttgacga tcgcttgggg atcgacgccc tgcgtgcgca ggtccgcgag
     4261 gctgagcgcg ccgtggcgct tggcgagtcg cgcgccgtcc gccccaacca gcagcgcgtg
     4321 gtggtggtag gcaggcgtgg gcaggccgag aagcgcctga agcaagcggt gcacatgggt
     4381 ggaaaggaac aggtcccggc cccggaccac gtcggagacg ccctgcgcgg cgtcgtccac
     4441 cgttacggcc aagtgatagc tggtcggggc gtccttgcgg gcgagcacga cgtccccgag
     4501 cagatcgggc cgcgccgcga ccgtgccggc gcgcgcatca tgccaggcga gcgggccgct
     4561 cagagccatc gccttgacga cgtccagccg ccaggcgtgc gggagggaca ggtcgggatc
     4621 ggcgaggccg cggcaggttc cggggtagag ggccccctcc ggcccatgcg gcgcggcggc
     4681 gctgcgggcg atgtcggcgc gcgtgcagaa acagggatag acgaggccgc gcgctttcag
     4741 ccggcccagc gcttcggcat aaagcggcag ccgctccgac tggcggatga cggggccgtc
     4801 ccattcgagg cccagccagt gcagatcttc ttcgattccc gcgacgaatt cctcgcgtgc
     4861 gcggcccgga tcgatatcct cgatgcggag caggaaccgc ccgcggcgcg cgcgcgcgaa
     4921 atcatgagcg agcaccgcgc tcatcgcgtg gcccagatga agccgcccgg tcgggctcgg
     4981 ggcgaaacgg gttgtggata agtctatgga caaaagcgtg gatcggcttg actgggttcc
     5041 gcacgaaatg tcatttcggc gtcattatca acgggcacat gcccgggcga gttcgaaggg
     5101 acatggaatg taccatcccg atctgatccg tcacccggac agttgcccgg cactcgtcct
     5161 gaatgccgac tacacgccgc tgagctatta tcccttgagc ctctggccct ggcagacggc
     5221 aatcaaggcc gtgttcctcg atcgggtcga tattgtcgaa tcctacgaga aagaggttcg
     5281 aagtcccacc agcgcgatga aactgccttc ggtcatcgcg ctcaagcaat atgtgaaacc
     5341 ttcccagcat ccggcattta ctcgcttcaa cctgttcctc cgcgaccgct tcacctgcca
     5401 atattgcggc acttcgcgcg acctcacctt cgatcacgtc gtccctcgcg cctatggcgg
     5461 gcgcaccacc tgggaaaatg tgtcgaccgc ctgcgcgcca tgcaacctga aaaagggcgg
     5521 ccgcaccccg gccgaagcgc atatggcgct gttcgaacag ccctatcgcc cgaccagctg
     5581 gcagctccag gatcatggcc gcgccttccc gcccaattat ctgcacgata cctggcggga
     5641 ctggctctat tgggacgtcg agctgcaggc ttagcgctcg acgcactccc ccgcctcgtc
     5701 atcccgaact cgtttcggga caggaggcgg gctgtcgtgg cgctgacgga aagcgcgctg
     5761 ccgcaacgtt ccacgccaac cgcccttcgc tttcgtgctt gtcccgaaac gagttcggga
     5821 tgacgaaagg ggttagctct gtggcgtcgg agatgggctc ggtgacggcg acggtgccgg
     5881 agtggacgac ggtgccggag cgggcgttgc cgccgccgtg cccgcgcgcg cgtcctggcc
     5941 gtcgccttcg ggcgcggcga tgatgtcgcg ggtgacggcg cccttgtcta cggcgttggt
     6001 ctggggggag cccacttcgg agcggatgcc gggctgggcg cgggcggcgc cggcctggtt
     6061 gagcgcggct tgttcgggcg cgctgcgcgg cgcggggccg ccgaacatcg cctgtagtgc
     6121 ctgagtcgag ctgtccgctt cctgcgggcg tggcgcgccg gggctcggcg gcttgagcgc
     6181 gaaatccggt ggcacgacga gcggcgcgcg gcgcgcgacc gcgaattcgt cggggcgcgt
     6241 gcggttcagt ccgctgccgc cgcagcccgc aagagtcagg ccgacaaggc ccagcacgat
     6301 cacattacgc attcaatttc tccgcgggct cgcttctggg tcgcatgaac aaggcgcgcc
     6361 cgagcaggat caggacaccg atggtaatcg cggcgtcggc gacattgaag accaaaaagg
     6421 ggcggaactc tccgaaatgc aggtcgagga aatcgaccac atagccgaag cgcacgcggt
     6481 cgagaatgtt gccgatcgcg ccacccagca cgaggccgag cgccgccaca tcggcgcggc
     6541 tggtctcgcg ccacagccag acgagcacgc cggtgccgat ggcagctgtg accgccacca
     6601 gcgcccagcg ctgggtctcc gaccccgccg tcaggaaccc catcgacacg ccgtgattgg
     6661 gcacgaaata gaagcggaag atcggcagca gctcaatgga gcccacgcgc atgaggccga
     6721 gcgggccggt gacgacccac ttcaccagct ggtcgaggat gaagatcacg gccgcgatca
     6781 gcaggccgag gcggcgggtt gcggtcattt tcccctcccg caagccggag gaaaggttac
     6841 ccactcacca cctccgaaca gcgatcgcac agcgtcccgt cctcgcgcac ctcgggcaga
     6901 tggcgccagc agcggccgca tttatgatat ccggtgcggg tcaccgcgat cgtatcaccc
     6961 ggcgagacct tcgccacgat gaacagctct tcgaggttgt catcgggggg cgccggcacg
     7021 gtgacttcgg cctcgaggct cgaccccacg act
//
LOCUS       DASQVK010000219         2207 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_330611,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000219 DASQVK010000000
VERSION     DASQVK010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330611"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..834
                     /locus_tag="VE567_04760"
     CDS             <1..834
                     /locus_tag="VE567_04760"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYZ48186.1"
                     /translation="VVQDLLPRYGIEATLVDGLDLDQWQRALRPNTKTFFLESPTNPT
                     LDVLDISAIAEIAHSAGARLIVDNVFATPIWQSPLALGADLVVYSATKHIDGQGRCLG
                     GIILSSEAFIAEHIHNFMRQTGPSMSPFNAWVLLKGLETLAVRVRAQTETAARVADAL
                     AKHPKITRLIYPGRADHPQAAVVKKQMRSGSTLIGFEVKGGKAGAFRCLNALKISRIS
                     NNLGDAKSLVTHPATTTHQRLTPEARAELGISEGFIRFSAGLEHADDLIEDFAAALET
                     V"
     gene            complement(905..1951)
                     /locus_tag="VE567_04765"
     CDS             complement(905..1951)
                     /locus_tag="VE567_04765"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HYZ48187.1"
                     /translation="MSNHRPFCFNTSLAVCAAAAVVLLASPPRAQVAPANQQAALSQN
                     AKAEAAKPGNSEASTAAPTMAAAATNSGSVPSTDQANPSQQKSITSKAIDKVKQVAKS
                     AGDVFSRVPCLPPKGGAKSMGSLPHVASKLAAGKPVTIVAFGSSSTQGYGSSGPEFTY
                     PNRLAAQLRRQYPTADITVVNRGRGGEDAPEMVRRLQTEVIDAHPDLVIWQVGTNAVL
                     RNLDPGETAKIVDDGIARIQAIGADVVLVDPQYSPAVNAKAESAGRMVRLLNKIAELR
                     HIGIFPRFEVMRQWHEKQSIPIEGFVIADGLHMNDWGYACFAQLLGDDIIRSVGQIKL
                     GVNVPKDVRTYRPM"
     gene            complement(1973..>2207)
                     /locus_tag="VE567_04770"
     CDS             complement(1973..>2207)
                     /locus_tag="VE567_04770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48188.1"
                     /translation="MISAPPYLDNMRVVAQQHDVPLFDRFAIMHHWNDTGDFDLFSAS
                     HGIELAKRVHACLGRALSKFVIDAAHLGPAQQN"
BASE COUNT          394 a          698 c          705 g          410 t
ORIGIN      
        1 gtcgtccagg acctgctgcc gcgctacggc atcgaggcca cgctggtcga cgggctcgac
       61 ctcgaccagt ggcagcgagc gttgaggccc aacaccaaga cattcttcct ggagagcccg
      121 accaacccga cgctcgatgt gctcgacatt tcggcgattg ccgagatcgc ccattccgcc
      181 ggcgcacgat tgatcgtcga caacgtgttt gcgacgccga tctggcagag cccgctcgcg
      241 ctcggcgccg acctcgtggt ctattcggcg accaaacata tcgacggcca gggccgctgc
      301 ctgggtggca tcatcctgtc gtcggaggcc ttcatcgccg agcacatcca taatttcatg
      361 cgccagaccg ggccgtcgat gtcgccgttc aacgcctggg tgctgctcaa gggcttggag
      421 acgctcgcgg tgcgggtccg tgcgcagacg gagaccgcgg ccagggtcgc cgatgcgctg
      481 gcgaagcatc caaaaatcac gcggctgatc tatcccgggc gcgccgatca tccgcaggcc
      541 gccgtggtga agaagcagat gcgctcggga tcgactctga tcggctttga agtgaaaggc
      601 ggcaaggccg gcgcgttccg ctgcctcaac gcgctgaaga tttcgcggat ctcgaacaac
      661 ctcggcgacg caaaaagcct cgtgacgcat ccggcgacca cgacgcatca gcgcctgacc
      721 ccggaagccc gcgccgaact cggtatcagc gagggcttta tccgcttctc cgccgggctg
      781 gagcacgccg acgatctgat cgaggatttc gcggcggcgc tggagacggt gtgaggtgct
      841 gggcgaatgg cgaatagaga gtagaatggt tatttcgcta ttcgccactc accattcgcc
      901 tgatctacat cggccggtac gtccgcacgt ccttcggcac gttgaccccg agcttgatct
      961 ggccgaccga gcggatgatg tcgtcgccaa gcaattgggc gaagcaggcg tagccccagt
     1021 cgttcatgtg caggccgtct gcgatgacaa agccctcgat cgggatcgac tgcttctcgt
     1081 gccactgacg catcacctcg aagcgcggga agatgccgat atggcggagc tcggcgatct
     1141 tgttgagcag cctcaccatc cggcccgcac tctccgcctt ggcgttcacc gccggcgaat
     1201 attgcggatc caccagcacg acgtcggcgc cgatcgcctg gatgcgggcg atgccgtcat
     1261 ccacgatctt tgcggtctcg ccgggatcca ggttacgcag caccgcgttg gtgccgacct
     1321 gccagatcac gagatccgga tgcgcatcga tcacttcggt ctgcaggcga cgcaccattt
     1381 ccggcgcgtc ctcgccgccc ctgccgcgat tgaccaccgt gatgtcggcg gtcggatact
     1441 gacgacgcaa ttgcgccgca agccggtttg gataggtgaa ttcgggcccg gacgaaccgt
     1501 agccctgggt ggaggacgag ccgaaggcga cgatcgtcac cggcttgccg gcggcgagct
     1561 tgcttgcgac gtgcggcagc gagcccatcg acttggcgcc gcccttcggc ggcaggcagg
     1621 gcacgcggct gaagacgtcg ccggccgatt tcgcgacctg cttcaccttg tcgatcgcct
     1681 tcgaggtgat gctcttttgc tgcgaaggat tggcctgatc ggtcgaagga acgcttccgc
     1741 tgttggtggc agccgctgcc atggtcggcg cggcagtgga cgcttcggaa ttgccgggtt
     1801 tggcggcctc ggctttcgcg ttctgggaca gcgccgcctg ctggttagcg ggcgcaacct
     1861 gcgcgcgcgg cggcgaggcg agtagcacga ccgccgcggc ggcacacacc gccagcgatg
     1921 tattgaagca aaaagggcgg tgattactca tactcattta cgctagttcc cattaattct
     1981 gctgcgccgg cccaaggtgg gcagcatcga tgacgaattt tgacagcgcg cggccgaggc
     2041 aggcatgaac ccgtttcgcc agctcgatac cgtgcgacgc gctgaacagg tcaaaatcgc
     2101 cggtatcgtt ccagtgatgc atgatggcaa agcggtcgaa cagcggaacg tcatgctgtt
     2161 gcgccactac acgcatgtta tctaggtatg gcggtgccga aatcatc
//
LOCUS       DASQVK010000220         3255 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_457416,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000220 DASQVK010000000
VERSION     DASQVK010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3255)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3255)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3255
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_457416"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2243)
                     /locus_tag="VE567_04775"
     CDS             complement(<1..2243)
                     /locus_tag="VE567_04775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004208848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYZ48189.1"
                     /translation="MNFRNISAWAIRNPVPPIVLFVALTLAGIVSFMRMDVNDNPDVE
                     FPAIQVVVVQPGAAPSELETQVTQRIEAAVRGVSGVDEMSSYVSEGNSRTFIQFAIGT
                     PVDRAYNDVQQAVSRIRSDLPEGILEPQVSRVDIAGGPITYYSAEATDMTLEELSWYI
                     DNTVAKQLLGIEGMAQVQRSGGVSREIRVVLDPARLQAQGLTAAQVNQQLRQVNLNAA
                     GGRAEIAGSEQAVRVLGNAPSAYALGGTQISVGNGRTVKLADIADVKDSYAEQRSLAK
                     MNGKQVLSFSISKAKGSSDVTVGDEADKVLKQLEKQNPKVKFRVLFTRTEYTKNQYHS
                     AMSAMIEGAVLAVVVVFLFLRDWRATIISALAIPLSAIPSFWFMDMMHFTLNGLSLLA
                     LSLVSGVLVDDAIVEIENIVRHMRMGKTAFQAAIDAADEIGLAVLATTMSIVAVFLPV
                     ALMPGISGQFFIQFGMTIVVAVLMSLAVARLITPMIAAYFLKAHGHQSHGEGWAMDRY
                     QALLRWSLDQRKADEMRAQGGARRWLAWTRDHRWWTIGIAVGAFALTIVAFATLPMQF
                     QPTINSDYSQVKIELPPGSTLQQTEAAADRVAILLNRQPEVDAAFADINVGNANIYLT
                     LKKDRKRSSVQFERALQPQLAALPDARVSFQSQSGGFSGRDITLVIGGDDPAQLYAQA
                     RKIVEQMNAVGAVRSPRIEGDMARPEIVIKPRLDLAANLGVTTAALSQAIRIATLGDI
                     DQNVAKFS"
     gene            complement(2258..>3255)
                     /locus_tag="VE567_04780"
     CDS             complement(2258..>3255)
                     /locus_tag="VE567_04780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007713012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HYZ48190.1"
                     /translation="APHISFIIPGREAVSRTVSATGTLAARREMPVSVVGEGGMVTRV
                     LVEPGDWVGAGQTLATVERSVQSQQAASLAAQINVARANAQLAEQELARAQQLVSRGF
                     VSKADVERRIATRDQTLAQVRVAEAQYREMIARNRRLDIRAPEAGLVLTRAVEPGQVI
                     GAGAGTLFRIAKGGEMEMRAQVAESDLAGIRVGAPATVTPVGSTQSFKGEVWQVSPVV
                     DPQTRLGTARVAIRYNPDIRPGGFARADIVTGSVDAPVLPESAVLSDAQGNFVYIVDA
                     SNKVVRRPVKTGQVSAQGIAIVEGLNGTEHVVLSAGAFVNPGQTVVPERAPAPAR"
BASE COUNT          532 a         1092 c         1072 g          559 t
ORIGIN      
        1 gagaatttgg cgacattctg gtcgatatcg cccagggtcg cgatgcggat cgcctggctg
       61 agcgctgcgg tggtcacccc gagattggcg gcaagatcga ggcgcggctt gatgacgatt
      121 tccggccgag ccatgtcgcc ctcgatgcgc ggcgaacgga cggcgccgac ggcgttcatc
      181 tgctcgacga tcttgcgtgc ctgcgcatag agctgcgcag ggtcgtcgcc gccgatcacc
      241 agggttatgt cgcggcccga aaacccgccg ctctgcgact ggaaactgac gcgcgcatcc
      301 ggaagcgcgg cgagctgcgg ttgcagcgcc cgctcgaact ggacactgct ccgcttccgg
      361 tctttcttta gcgtcagata gatattggca ttaccgacgt tgatgtctgc aaatgccgca
      421 tcgacttctg gctggcggtt gagcaggatc gcgacccggt cggccgcggc ctcggtctgc
      481 tgcagcgtcg agccgggcgg cagctcgatc ttcacctggc tatagtcgct gttgatcgtc
      541 ggctggaact gcatcggcag agtcgcgaac gcaacgatgg tcagggcgaa ggccccgacg
      601 gcgatgccga tggtccacca gcgatgatcg cgcgtccagg cgagccaccg ccgcgcgccg
      661 ccctgggccc gcatttcgtc cgccttgcgc tgatcgagcg accagcggag cagcgcctgg
      721 tagcgatcca tcgcccagcc ctcgccatgg ctctgatggc catgggcctt caggaaatag
      781 gccgcgatca tcggcgtgat caggcgcgcg acggcaaggc tcatcagcac cgccaccacg
      841 atggtcatgc cgaactggat gaagaattgg ccggaaatgc ccggcatcag cgcgaccggc
      901 aggaacaccg ccacgatcga catggtggtg gcgagcacgg cgagaccgat ctcgtcggcg
      961 gcgtcgatcg cggcctggaa cgccgtctta cccatgcgca tgtggcgcac gatgttctcg
     1021 atctccacga tcgcgtcgtc gaccagcacg ccggacacga ggctcagcgc caacaggctg
     1081 agcccgttca gcgtgaagtg catcatgtcc atgaaccaga aggacgggat cgcggacaag
     1141 gggatggcca gcgcggaaat gatcgtcgca cgccagtcgc gcaggaacag gaagaccacg
     1201 acgacggcga gcaccgcgcc ttcgatcatc gccgacattg ccgaatgata ttggttcttg
     1261 gtgtattcgg tgcgcgtgaa cagcacccga aacttgacct tcgggttctg cttttcgagc
     1321 tgcttcagca ccttgtcggc ttcgtcgccg acggtcacgt cggacgagcc ctttgccttg
     1381 gaaatcgaga agctcagcac ctgcttgccg ttcatcttgg cgagcgaacg ctgctccgca
     1441 taggagtcct tgacgtcggc gatgtccgcc agcttgaccg tgcggccgtt gcccaccgaa
     1501 atctgggttc cgcccagcgc ataggccgag ggcgcgttgc cgagcacgcg caccgcctgc
     1561 tcggatccgg cgatctcggc gcggccgccg gcggcgttca aattcacctg gcggagctgc
     1621 tggttgacct gtgccgcggt caagccctgc gcctgcagcc tggcgggatc gagaaccaca
     1681 cggatctcgc ggctgacgcc gcccgagcgc tgcacctgcg ccatgccctc gatgccgagc
     1741 agctgtttgg cgacggtgtt gtcgatatac caggagagtt cctccagcgt catatcggtc
     1801 gcttcggccg aataataggt gatcggcccg ccggcgatgt cgacgcggct gacctggggc
     1861 tcgagaatgc cttccggcaa gtcgctgcgg atgcgcgaga ctgcctgctg cacgtcgtta
     1921 taggcgcggt cgacaggcgt gccgatcgcg aactggatga aggtgcggct gttgccttcg
     1981 ctgacatagg acgacatctc gtccacgccg ctcacgccgc gcacggcggc ctcgatgcgc
     2041 tgggtgacct gcgtctccag ctccgaaggg gccgcgccgg gctggacgac gaccacctgg
     2101 attgccggga actcgacgtc cggattgtca tttacgtcca tccgcatgaa gctgacgatg
     2161 cctgccagcg tcagcgcgac gaacaggacg atcggcggca ccgggttgcg gatcgcccag
     2221 gcggagatgt tgcggaagtt catggcgacc tcgcctctta gcgcgcgggt gccggagcgc
     2281 gttccggcac gaccgtctgg cccgggttca cgaacgcacc ggccgagagc accacatgct
     2341 ccgtgccgtt cagcccctcg acgatggcga tcccctgggc gcttacctgg cccgtcttga
     2401 ccgggcggcg gacgaccttg ttcgacgcgt cgacgatata gacgaaattg ccctgcgcat
     2461 cgctcagcac tgccgattcc ggcagcaccg gggcgtcgac cgagcccgtc acgatgtcgg
     2521 cccgcgcaaa gccgcccgga cgaatgtcgg gattgtagcg gatcgcaacg cgcgcggtgc
     2581 cgagccgcgt ctgcgggtcg acgaccggcg aaacctgcca gacctcgccc ttgaagctct
     2641 gcgtcgatcc gaccggcgtg accgttgccg gcgcgccgac gcggatgccg gcaagatcgc
     2701 tctccgccac ctgggcgcgc atttccatct cgccaccttt ggcgatgcgg aacagcgtgc
     2761 ccgcgcctgc tccgatgacc tggccgggct cgaccgcgcg cgtcagcacc aacccggctt
     2821 cgggggcgcg gatgtcgagc cggcggttgc gggcgatcat ttcgcgatac tgggcctccg
     2881 cgacgcggac ctgcgccagc gtctggtcgc gcgtggcgat tcggcgctcg acatcggcct
     2941 tggacacaaa gccgcgcgac acgagttgct gcgcgcgcgc cagctcctgc tcggccagct
     3001 gggcgttggc gcgggcgaca ttgatctggg cggcaagcga agccgcctgt tgcgactgga
     3061 ccgagcgttc gaccgtggcg agcgtttgcc cggcgccgac ccagtcgcct ggttcgacca
     3121 gcacgcgcgt caccatcccg ccctcgccga ccacactcac cggcatttcg cgccgggccg
     3181 ccagcgtccc cgtcgccgaa accgtgcgcg aaaccgcttc gcgcccgggt atgatgaagc
     3241 tgatatgcgg cgcct
//
LOCUS       DASQVK010000221         3479 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_45666, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000221 DASQVK010000000
VERSION     DASQVK010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3479)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3479)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3479
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45666"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            294..1304
                     /locus_tag="VE567_04785"
     CDS             294..1304
                     /locus_tag="VE567_04785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008828685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HYZ48191.1"
                     /translation="MTRNRYWRLNARPSEMDFEAALSLETEGLQPPAAGELVIRNEWL
                     SMDAGTRMWMSARTDGYQPPLPLGSKMTGLALGTVVESAHPSFRAGDRVRAFGQWADY
                     SVVTPEASMLTRLEESVDDPRQWFGALGLNAWTAYAGLVEVAKVREGETVLVSAAAGA
                     TGSLACQIARNLGARVIGIAGGPDKKRFLLEEIGVDRAIDYKAEDVTAALADVGGGVD
                     VYFDNVGGEILDAALANMALYGRIAVCGLISVYAQQGRAPGPAHFDQVLMKRLTITGF
                     FLPDFAERAAGFTPMLRRWHEEGRLNMRFDETVGLENTLEAYRRMLSGRNIGKVIVDV
                     RG"
     gene            1304..1531
                     /locus_tag="VE567_04790"
     CDS             1304..1531
                     /locus_tag="VE567_04790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48192.1"
                     /translation="MPIIRYDAPVRCLVAVRGHPFDRTGFDAVFQAMNGISATMVDQP
                     AAALLMKPEAMRQSRSTGHRTRRCRATDRKH"
     gene            1638..2786
                     /locus_tag="VE567_04795"
     CDS             1638..2786
                     /locus_tag="VE567_04795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017667431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYZ48193.1"
                     /translation="MDAETFEMFRSTLRRFVEERLIPAEDAVEEADAVPPEIVAQMKE
                     LGLFGISIPEAYGGLGCTMAEEAAIARELSRASLAFRSVIGTTVGIGSQGIVIDGTEE
                     QKREWLPRLATGEAISSFALTEPEAGSDAASLRTSAVQEGDRYRINGTKRFITNAPRA
                     SVFTLMARTDPETRGPSGISSFIIPADTPGITLGKPDKKMGQKGSITCDVILEDVVVP
                     ASAIIGGVPGQGFKTAMKVLDRGRIHMGAVALGMMDRLIEMSTRYASERKQFGKPIGE
                     HQLVQGMLADMKCDQLTSEALLEKVARAFDAGEKTPLEAAALKYVATEAVGRIADKAV
                     QIHGGAGYMAEYKVERFYRDVRLLRIYEGTSQIQQTIIARQMLRQMAA"
     gene            2833..>3479
                     /locus_tag="VE567_04800"
     CDS             2833..>3479
                     /locus_tag="VE567_04800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HYZ48194.1"
                     /translation="MYRETADPQAPRAMIDGFGRRISYVRLSVTDRCDLRCRYCMAEQ
                     MAFLPKRDILSIEEMVTLADLFIARGVTKIRLTGGEPLVRRGIDILLRALGERLGRGL
                     HELTLTTNGTQLARFAGLLAEAGVRRVNVSLDSRDPARFRHITRRGELAQVLDGIAAG
                     RAAGLRLKINMVALKGLNEDEIGDMLAWCAAEGHDLTLIETMPLGEVEDDRTGHYL"
BASE COUNT          621 a         1051 c         1197 g          610 t
ORIGIN      
        1 ctttccccgc gcttgcgcgc ggtgacgacg atgtcggaaa ggccgccctg cgcggcggtc
       61 gggccggccg cttgtcccgc atcctggctt tcctgggcct tggccggaac cgccgccagc
      121 gaaatcgcaa gcatgcttga ggccacgcaa aggcgaagag cctgagcttt catattctat
      181 cctcccatat tttgtgaggc gacagtgctg gcgtccggcc gcgaagtcgc ctgagaaaaa
      241 tcagaggttc gcgccgattt tgaacgtcgc atctctgctg gggggagaga accatgaccc
      301 ggaacagata ttggcgcctg aacgctcgcc cgagcgaaat ggatttcgag gctgcgctgt
      361 cgttggagac ggagggcctg cagccgcccg ccgcgggcga actcgttatc cgcaacgagt
      421 ggctgtcgat ggacgccggc acgcggatgt ggatgtcggc gcgcacggac ggatatcagc
      481 ctcctttgcc cttgggcagc aagatgacgg gcctggcgct cggcacggtg gtggagtccg
      541 cgcatccatc cttccgcgcg ggcgatcggg tccgggcatt cgggcagtgg gccgactatt
      601 cggtcgtgac gcccgaggcc tcgatgctga cacggctcga ggaatccgtc gacgatccgc
      661 ggcaatggtt cggtgcgctc ggtctcaatg cctggaccgc ctatgccggg ctcgtcgagg
      721 tggcgaaagt ccgtgaggga gagacggtgc tggtctccgc cgcggcaggc gcgaccggat
      781 cgcttgcctg ccagatcgcg cgcaatctgg gcgctcgcgt gatcggcatc gccggcgggc
      841 cggacaagaa gcgattcctg ctggaagaga tcggggtgga tcgtgcgatc gattacaaag
      901 ccgaggatgt gacggcggcg ctggcggacg tgggcggcgg cgtggacgtc tatttcgaca
      961 atgtcggcgg cgagattctc gatgcggccc tcgccaatat ggctctgtac gggcgtatcg
     1021 ccgtgtgcgg cctgatctcg gtttacgccc agcagggcag ggcgccgggg ccggcgcatt
     1081 tcgatcaggt tttgatgaag cgcctgacga tcaccggatt tttcctcccg gatttcgccg
     1141 agcgcgcagc cgggtttacg ccgatgctgc gccgctggca tgaggagggt cgattgaata
     1201 tgcggttcga cgagaccgtc ggcctggaaa acacgctcga agcgtatcgc cgcatgctga
     1261 gcggccggaa catcggcaag gtgatcgtgg acgttcgcgg ctgatgccga tcatccgcta
     1321 cgatgcgccg gtgcggtgtt tggtggccgt gcgggggcat ccgttcgacc ggaccggctt
     1381 tgacgctgtt ttccaggcga tgaacgggat ttcggcgacg atggtggatc agcccgccgc
     1441 cgccctgctg atgaaacccg aggccatgcg gcaatcgcga tcaaccggtc acagaacccg
     1501 acgttgtcga gcaactgacc ggaaacattg acatcgatct gaaggccgtt ttccctccga
     1561 tcgctccgaa ccggacttga cacttgtctc ggaatcggcg cgtccgtgct ggacgacacc
     1621 acgagaaagc cttgggaatg gatgccgaaa cgttcgagat gttccgatcg acgctgcgcc
     1681 gcttcgtcga agagcgtctg attccggctg aggatgcggt cgaggaggcc gatgccgttc
     1741 cgccagagat cgtcgcgcag atgaaggagc ttgggctgtt cggtatctcc attccggaag
     1801 cgtatggcgg gcttggctgc accatggcgg aggaagcggc gatcgcgcgc gagctgagcc
     1861 gggcctcgct cgcctttcgc tcggtgatcg gcaccacggt cggcattggc agccagggca
     1921 tcgtcattga cggcacggag gagcagaagc gcgaatggtt gccgcgcctg gccacgggcg
     1981 aggcgatttc gagcttcgcg ctcaccgaac cggaagcggg ctccgacgcc gcttcgctcc
     2041 gcaccagcgc ggtccaggaa ggcgatcgtt accggatcaa cggcaccaag cgcttcatca
     2101 ccaatgcacc gcgcgcctcc gtgttcacat tgatggcgcg caccgatccc gagaccaggg
     2161 gcccatccgg catctcctcc ttcatcatac ccgccgacac gccgggcatc acgctcggca
     2221 agcccgacaa gaaaatgggg cagaagggct cgatcacctg cgatgtgatc ctggaggatg
     2281 tcgtggtgcc cgcctcggcg atcatcggcg gcgtgccggg ccagggcttc aagaccgcga
     2341 tgaaagtgct cgaccggggc cgtattcaca tgggtgccgt cgcgctcggc atgatggacc
     2401 ggctgatcga gatgagcacg cgctatgcca gcgagcgcaa gcagttcggc aagccgattg
     2461 gcgagcacca gctcgtccag ggcatgctgg ccgatatgaa gtgcgatcaa ctgacctccg
     2521 aagcgctgct ggagaaagtc gcgcgcgcgt tcgatgcggg cgagaagacg ccgctcgaag
     2581 ccgccgcgct caaatatgtg gcgaccgagg ccgtcgggcg catcgccgac aaagccgtcc
     2641 agatccatgg cggcgccggc tatatggccg aatacaaggt cgaacgcttc tatcgcgacg
     2701 tgcgattgct ccgcatctat gaaggcacgt cgcagatcca gcaaaccatc atcgccaggc
     2761 aaatgcttcg ccagatggcc gcgtgagcgc gggatgctag gcgcgcccgg cggaggggcg
     2821 tagagaaggc tcatgtatcg ggaaacggcg gacccgcagg cgcctcgggc gatgatcgac
     2881 ggcttcggcc gcaggatcag ctatgtgcgc ctgtcggtca ccgatcgctg cgacctgcgc
     2941 tgccgctatt gcatggcgga gcaaatggct ttcctgccga agcgcgacat tctgtcgatt
     3001 gaagagatgg taacgcttgc ggacctgttc attgcgcgcg gcgtgaccaa gatcaggctg
     3061 acaggcggcg aaccgctggt gcgccgcggc atcgacatat tgctgcgcgc actcggcgag
     3121 cggctgggca gggggctgca cgaactgacg ctcaccacga acggcaccca gctcgcgcgc
     3181 tttgccgggt tgctggcgga agcgggcgtg cggcgcgtca atgtcagcct cgatagccgt
     3241 gatccggcgc ggttccgaca catcactcgc cgcggcgagc tggcacaggt gctggacggt
     3301 atcgcggcag ggcgggcggc gggcttgcgc ctcaagatca acatggtggc gctcaaaggt
     3361 cttaacgagg acgagatcgg cgacatgctc gcctggtgcg cggcggaagg gcacgacctg
     3421 acgctgatcg agaccatgcc gctgggcgaa gtggaggatg accgcactgg ccattatct
//
LOCUS       DASQVK010000222         2630 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_299042,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000222 DASQVK010000000
VERSION     DASQVK010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2630)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2630)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2630
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299042"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1396
                     /locus_tag="VE567_04805"
     CDS             <1..1396
                     /locus_tag="VE567_04805"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYZ48195.1"
                     /translation="RRRKLISVAGVFTARLALPIYAATPFITDRNAATITLLGAALLH
                     YGLNAASACSWNSWIRDLIPPGRLGMFTARRGLYGTIVSAVATVAAAIALAGAGTSEA
                     VGDRIFSALYLTGFVFGLISTLALARVPEPVMPPASSGAPLWRLLAEPLHHRNLRSML
                     RYAASWQFAINLATPFFTVYFVRELGFSMSFVLVLAVISQLANAAVVRGWGRLSDRFA
                     NKSVLALATPLFILCVAAIAFTSEIEGATGRAAYLVGLHILMGAAGAGVGLAAGNIVM
                     KLSPSGNATGYMAANALVSAVAAGTAPVVGGWAADFFARRQLTLTIDWTSPSGVAELV
                     GLSLTHWEFFFVLSALIGLYSLHRLSAIEEPGAVERREVVQHIFSSARRTLRNASTVA
                     GLRLAVSFPGGELIKLRERPPLLLEDIYEDEKRVSPAPPRTAAIGALLGAAFEEPAND
                     GNFEDLLKKLDRAA"
     gene            complement(1444..1926)
                     /locus_tag="VE567_04810"
     CDS             complement(1444..1926)
                     /locus_tag="VE567_04810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017672617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20 family protein"
                     /protein_id="HYZ48196.1"
                     /translation="MRTFDFTPYRRTTVGFDRLFDLLEDSMRANSADNYPPVNIEKLG
                     EDQYRITLAVAGFSQGELEVIGQQNLLVVRGRKPDNADEGKQYLHHGIGTRPFERRFE
                     LADFVKVSAADLKDGLLIIDLVREIPEAMKPRKIEIGGSNVQQVDGGQKQLEGTRRAA
                     "
     gene            complement(2060..>2630)
                     /locus_tag="VE567_04815"
     CDS             complement(2060..>2630)
                     /locus_tag="VE567_04815"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008934 - inositol monophosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006020 - inositol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046855 - obsolete inositol phosphate
                     dephosphorylation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HYZ48197.1"
                     /translation="DPSKPRWIIDPLDGTSNFLHGIPHFAISMAVQEPSGEVTTGLIY
                     QPLTDESFWAEKGRGAWLQDQRLRVSSRRDLADSLIATGIPFKGHGDLAQWSRIFGAV
                     APEVAGIRRFGSAALDLAWVAAGRYDGFWESGLKPWDVAAGVLLVREAGGFVTDFRGG
                     DRAMERSEFLAANDALHSRLHKLVAGALR"
BASE COUNT          414 a          889 c          845 g          482 t
ORIGIN      
        1 gcggcggcgc aagctgatct cggtggccgg cgtgttcacc gcgcggctgg cgctgcccat
       61 ctatgccgcc acgcccttca tcacggaccg gaacgccgca acgatcacct tattgggtgc
      121 ggccttgctc cattacggcc tcaacgccgc atcggcctgc agctggaaca gctggatccg
      181 ggacctgatt ccgcccggcc gactcggcat gtttaccgcg cgacggggcc tttacggcac
      241 catcgtgagc gcggtcgcga cggtcgcggc agccatagca ctcgccggcg ccggcacctc
      301 ggaggcggtc ggagaccgga tcttcagcgc gctctacctt accggcttcg tcttcggcct
      361 gatcagcact ctcgccctcg cccgggtgcc ggagccggtg atgccgccag cctcttccgg
      421 cgcgccgctg tggaggctgc tggcggagcc gctgcaccat cggaacttga ggtccatgct
      481 gcgatatgcc gcgagctggc aattcgcaat caatctcgcg acgccgttct tcaccgtcta
      541 tttcgtccgc gaactgggct tcagcatgag cttcgtgctg gtgctcgcgg tcatcagcca
      601 gctcgccaat gcggcggtcg tgcgcggctg gggccggctc agcgatcgct tcgccaacaa
      661 atctgtgctg gcgctcgcga caccgttgtt catcctgtgc gtagcggcga tcgcgtttac
      721 cagcgaaata gagggcgcga cggggcgcgc tgcctatttg gttgggctgc atatccttat
      781 gggcgctgcc ggtgcgggcg tcgggctcgc cgccggcaat atcgtgatga agctcagccc
      841 ctcgggcaat gcgaccggct atatggccgc caacgcgctg gtctccgcgg tcgcggctgg
      901 caccgcgccg gtcgtcggcg gctgggcggc cgactttttc gcccgccgcc agcttacgct
      961 gacgatcgac tggaccagcc ccagcggcgt cgcggaactc gtcggcctgt cgctcacgca
     1021 ctgggagttc ttcttcgtgc tgtcggccct gatcgggctc tacagcctgc accggctgtc
     1081 ggcgatcgag gagccgggcg ccgtcgagcg gcgcgaagtc gtccagcaca tcttctcctc
     1141 cgctcgccgg actctgcgca acgcctccac cgtcgcgggc ctgaggctcg cggtcagctt
     1201 ccccggcggc gagctgatca agctgcgaga gcgcccgcca ctcctgctcg aagatattta
     1261 cgaagacgaa aagcgcgtca gccccgctcc accccgcacc gccgcaattg gcgcactgct
     1321 gggggcagcc tttgaggaac cggccaacga tggcaatttc gaagacttgt tgaagaagct
     1381 cgatcgagct gcctgagctc gacgaaaaga gcgcccggag gtgtcccggg cgctcttgct
     1441 gcgtcaggcg gcccggcgcg tgccttcaag ctgcttttgc ccgccgtcga cctgctggac
     1501 gttgctgccg ccgatctcga tcttgcgcgg cttcatcgcc tcggggattt cacgcaccag
     1561 atcgatgatc agcaggccgt ccttcaggtc ggccgcgctt accttgacga aatcggcaag
     1621 ctcgaaccgg cgctcgaacg gccgcgtgcc gatgccatga tggagatact gcttgccctc
     1681 atcggcattg tcaggcttgc ggccgcgcac gaccagcagg ttctgctgcc cgatcacttc
     1741 cagctcgccc tggctgaagc cggcgacggc aagcgtgatg cgatactggt cctcgcccaa
     1801 tttttcgatg ttcacgggcg ggtaattgtc cgcgctgttc gcgcgcatgc tgtcttcgag
     1861 caggtcgaac agccgatcga agccgacggt ggtccgccga taaggtgtga agtcaaaggt
     1921 cctcatcatc caaatcctcc tatgagcaat ctggcttcag agggagcgcc cgagagcggg
     1981 cgccctcttc gccgccggac ccgccttcgg catccggcag tctgaaattt gggtcagtga
     2041 gggtgtcgtt tcaaggcctc tatctcagcg cccctgcgac caatttgtgc aggcgggagt
     2101 ggagggcgtc gttggcagcg aggaattcgc tgcgctccat cgcgcggtcg ccgccgcgaa
     2161 aatcggtaac gaagccgccc gcttcccgca ctagcaacac gccggcagca acgtcccatg
     2221 gcttgaggcc cgattcccag aaaccatcgt agcgccccgc cgccacccag gcgaggtcga
     2281 gcgcagccga gccgaagcga cgaatgccgg cgacttcagg cgcaaccgcg ccgaagatgc
     2341 ggctccattg cgcaaggtcg ccatgccctt tgaacgggat gccggtcgcg ataagcgagt
     2401 cggccaggtc gcggcgggag gagacgcgca ggcgctggtc ctgcagccag gcaccccgtc
     2461 ccttttcagc ccagaagctc tcgtcggtga gcggctgata gatgagcccg gtcgtgacct
     2521 cgcccgaggg ctcctgcacg gccatggaga tcgcgaaatg cgggatgccg tgcaggaagt
     2581 tggacgtgcc gtccagcggg tcgatgatcc agcgcggctt cgacggatcg
//
LOCUS       DASQVK010000223         2885 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_427799,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000223 DASQVK010000000
VERSION     DASQVK010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2885
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427799"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..865)
                     /locus_tag="VE567_04820"
     CDS             complement(<1..865)
                     /locus_tag="VE567_04820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011241606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HYZ48198.1"
                     /translation="MTELPKTFDPGAIEAKWYPYWEENNLFRPERPDAEPFTIVIPPP
                     NVTGSLHIGHALDNTLQDVLIRHARLKGRDALWVVGTDHAGIATQMVVERNLGNQGVK
                     RTDLSREAFVEHVWEWKAQSGGQITRQLRRLGASCDWANERFTMDEGFSRAVRKVFVE
                     LYREGLIYRDKRLVNWDPKFGTAISDLEVETREVQGKFWHFRYPLADGSGHISVATTR
                     PETMLADMAVAVNPEDDRYRHLVGKQVRLPVTGRLVPIIADEHADPELGSGAVKITPG
                     HDFNDFEVGVRA"
     gene            complement(1115..1594)
                     /locus_tag="VE567_04825"
     CDS             complement(1115..1594)
                     /locus_tag="VE567_04825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2497 domain-containing protein"
                     /protein_id="HYZ48199.1"
                     /translation="MEEILSSIKRIIAEESDVPVPRRAKAVPVEEPDVLELTDAVGEP
                     ETMHGAVPEPEPEFEEISVEEAPALAAAPVAPAPAAPSDMDALLSSATADASRRALAS
                     LSRMVVKTDEPAGDNTLEGLVRDMLRPMLKEWLDTNLPRIVQATVDREVARIAGRQG"
     gene            complement(1633..>2885)
                     /locus_tag="VE567_04830"
     CDS             complement(1633..>2885)
                     /locus_tag="VE567_04830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020818306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TolC family outer membrane protein"
                     /protein_id="HYZ48200.1"
                     /translation="NSRLTENVLTPSGQTVTVGRQLDNTLQMNVPIYQGGAVINSVRA
                     ADRRVRAGEEQLRGTESSVFSQVVAAYNDVIRDGAIVELNRNNVKNLEVNLQATRDRF
                     EVGDLTRTDVAQSEARLSLARGQLQTAESNLISSRERYIALVGDVPADLAPPPPLPNL
                     PATPEDAIQVAVRENPDLRAAERNREAARYDVRAAEAGQLPKLSAFASGGYTNYLNSV
                     SSQIPQLNVENASKQASLGLQATIPLFQGGRPGAQVRQAQARQAQSLEQVIGAERAVV
                     QQVRAAYAAWKSSQEVIRSAEAAVAANTLSLEGVRAENSVGNRTILDILNAEQELLSS
                     QVQLVSARRDAYVAAFTLLAAMGQAEARDLNLDGVTLYDPTENYRRVRHKIWDYDSDP
                     EPKTIATRTVDTPSQNPATIVGPK"
BASE COUNT          431 a          936 c          991 g          527 t
ORIGIN      
        1 cggcgcgaac gccgacttcg aagtcgttga aatcatggcc tggcgtgatc ttgacggcgc
       61 ccgagcccag ctccggatcg gcatgttcgt cggcgatgat cgggacgagg cgaccggtga
      121 ccggcagccg cacctgcttg ccgaccagat gccggtaacg atcatcctcc gggttcaccg
      181 cgacggccat gtcggccagc atcgtctcgg gccgcgtggt ggcgacggag atatggcccg
      241 agccgtcggc gagcgggtag cggaagtgcc agaatttgcc ctggacttcg cgggtttcga
      301 cctcgaggtc cgaaatggcg gtgccgaact tcgggtccca gttcacgagc cttttgtcgc
      361 ggtagatcaa gccttcgcgg tagagttcga cgaacacctt gcggacggcg cggctgaaac
      421 cttcgtccat cgtgaaacgc tcgttcgccc aatcgcacga cgcgcccagg cggcggagct
      481 ggcgggtgat ctggccgccc gactgcgcct tccactccca gacatgctcg acgaacgcct
      541 cgcgcgacag gtccgtgcgc ttgacgccct ggttacccag gttgcgctca acgaccatct
      601 gagtggcaat accggcatga tcggtgccca cgacccaaag ggcgtccctg cccttcagcc
      661 gcgcgtggcg gatcagcaca tcctgcagcg tattgtcgag cgcatggccg atatggagcg
      721 agccggtgac gttcggcggc ggaatgacga tcgtgaacgg ctccgcatcc ggccgctcgg
      781 gacggaagag attattctcc tcccaatagg gataccattt cgcctcgatg gcgccggggt
      841 cgaaggtctt cggcagctcg gtcatggggt tgggccttag acgagcgagc ggcgcatcgc
      901 caagggcgtt gggcagcggg agcgcggcgg gaagcgcaac tcgcaatacc aaacccgtca
      961 tcccgaactt gtttcgggac aagcgggacg ccgctccgag cctgtcggct tatctctggc
     1021 gccacgctgc tctactcttg tcccgaaaca agttcgggat gacgaagaga gggttttacg
     1081 acggcgcaga gtcgttccgg ggtgacgccc tgtgttaccc ctgccgcccc gcgatgcgcg
     1141 cgacttcgcg gtcgacggtc gcctggacga tgcgcggcag gttggtgtcg agccactcct
     1201 tcagcatcgg gcggagcatg tcgcggacca ggccttcgag cgtgttgtct ccggcgggtt
     1261 cgtcggtttt gaccaccatg cgcgacagcg aggcgagcgc gcggcgactc gcgtcggccg
     1321 tggcggacga aagcagcgcg tccatgtcgc tcggcgcggc cggggcgggc gcaaccggcg
     1381 ccgcggcgag agcgggtgct tcctccacgc tgatctcctc gaactcgggc tccggctcgg
     1441 gcacagcgcc gtgcatcgtc tccggctcgc cgaccgcgtc cgtcagctcc agcacgtccg
     1501 gctcttcgac gggcacggct ttggcgcggc gcggcacagg cacatcgctc tcctcggcga
     1561 tgatgcgttt gatggaggaa agtatctcct ccatcgacgg ttcgtttggc tgacccatgc
     1621 cgctggtccg gactatttcg gtccgacgat tgttgccggg ttctgggagg gcgtgtcaac
     1681 ggtacgcgtg gcgatcgtct tcggttcggg atcgctgtcg taatcccaga tcttgtggcg
     1741 gacgcggcga tagttttctg tcgggtcgta gagcgtcacg ccgtcgaggt tcagatcgcg
     1801 cgcctccgcc tgccccattg ccgccagcag cgtgaacgcg gcgacatagg cgtcccgtcg
     1861 cgccgagacg agctgaacct ggctgctgag caattcctgc tcggcgttca gaatatcgag
     1921 gatggtgcga ttgccgacgc tgttttcggc gcgcacgcct tccagcgaca aggtattggc
     1981 ggcgaccgcc gcctcggctg agcggatcac ttcctggctc gatttccagg ccgcataggc
     2041 ggcgcggacc tgctggacga cggcgcgttc ggcaccgatc acctgctcca gcgactgggc
     2101 ctggcgcgcc tgcgcctggc ggacctgcgc gccgggacgg ccgccctgga aaagcggaat
     2161 cgtcgcctgc aggccgagcg aggcctgctt gctcgcattc tcgacattga gctgcgggat
     2221 ctgggagctg acgctgttca aatagttggt gtagccgcca ctggcaaagg ccgagagctt
     2281 tggcagctgg cccgcctcgg cggcgcgcac gtcgtaccgc gcggcctcgc ggttccgctc
     2341 tgcggcgcgc aggtccggat tctcgcggac ggccacctgg atggcgtctt cgggcgtggc
     2401 cggcaggttc ggcagcggcg gcggcggcgc gagatcggcc ggcacgtcgc cgaccagcgc
     2461 gatatagcgc tcgcggctgg agatcaggtt cgattcggcc gtctgcagct ggccccgggc
     2521 gagcgacagc cgcgcctccg actgggcgac gtcggtgcgg gtcaggtcgc cgacctcgaa
     2581 ccggtcgcgc gtcgcctgaa gattgacctc cagattcttg acgttgttgc ggttgagctc
     2641 gacgatcgcg ccgtcgcgga tcacgtcgtt ataggcggcg accacctggc tgaagacgct
     2701 cgattcggtg ccgcgcagct gctcctcgcc cgcgcgcacg cgccgatcgg cggcacggac
     2761 gctgttgatg acggcgccgc cctgataaat ggggacgttc atctgcagcg tgttgtccag
     2821 ctgccggccg accgtgaccg tctgcccgga cggcgtcagc acattctccg tcaagcggct
     2881 gttgg
//
LOCUS       DASQVK010000224         2125 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_457523,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000224 DASQVK010000000
VERSION     DASQVK010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_457523"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..610)
                     /locus_tag="VE567_04835"
     CDS             complement(<1..610)
                     /locus_tag="VE567_04835"
                     /inference="COORDINATES: protein motif:HMM:NF014195.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009427 - bacterial-type flagellum basal
                     body, distal rod, L ring [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HYZ48201.1"
                     /translation="MAWSKDRAPYESRPPDNRSTPGVHPMKISKSVVAMMLIPLVGGC
                     GTAGRLANVGRAPKFTPQEELPAATAERSLAHPNVVDQIASSQAGHTVPQAPHTASSA
                     SLFRPGAGDLFRDQRAAAVGDIVTIRINVADRASVDNTTSRSRSGSENAGLASLFGLQ
                     TSLSKALPGNPDPSKIVDTSSASKSTGTGATQRSETINMTMAA"
     gene            complement(564..989)
                     /gene="flgA"
                     /locus_tag="VE567_04840"
     CDS             complement(564..989)
                     /gene="flgA"
                     /locus_tag="VE567_04840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008830469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation chaperone
                     FlgA"
                     /protein_id="HYZ48202.1"
                     /translation="MLTLLLSQLVVASAPPLVDVPVLTRAVERGEILSLDHFTTAERA
                     AAQARGALSPQAAKGMEAAHRLMEGTIVRATDVTKPQLVRRGEPVTITMRSGGLTITT
                     AGRALGNGAAGELVRVVASTNRTLDGVVEGSGAVRISAP"
     gene            complement(994..1779)
                     /gene="flgG"
                     /locus_tag="VE567_04845"
     CDS             complement(994..1779)
                     /gene="flgG"
                     /locus_tag="VE567_04845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010219799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009426 - bacterial-type flagellum basal
                     body, distal rod [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HYZ48203.1"
                     /translation="MRSLSIAATGMLAQQTNVDVISNNIANMNTTAFKRQRAEFQDLL
                     YQQVARPGASTGSQDSRAPSGIQIGAGVRTGGVYRIGEQGALTQTDNRYDVAIEGDGY
                     FQITLPNGNLAYTRAGSFQVSDLGELVTADGYPVQPGITIPKDATDVVISATGNVEIK
                     VPGNPQLQQVGQLQLATFVNQAGLEALGGNLFAETPASGPATIAAPGDPGFGTLRQGF
                     LEASNVNPVAEITALITAQRAYEMNSRVVKTADEMLATTSQMR"
     gene            complement(1805..>2125)
                     /locus_tag="VE567_04850"
     CDS             complement(1805..>2125)
                     /locus_tag="VE567_04850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010214914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod C-terminal
                     domain-containing protein"
                     /protein_id="HYZ48204.1"
                     /translation="QLRIAEDGTVSGLQGPLGRLAITIFDSEAAVSPRGDGMMTGQGG
                     RPPTPGETRLRSGGLEGSNVQPIAETTAMVEILRSYQTSQQLSASLDDMRKRAIEQLS
                     RAGS"
BASE COUNT          340 a          659 c          720 g          406 t
ORIGIN      
        1 ctgctgccat tgtcatattt atcgtttcac tgcgctgggt cgcccctgtg ccagtggact
       61 tcgaggcgga gcttgtgtcg acgatcttgc ttgggtcggg attgccgggc agcgctttgc
      121 ttagcgacgt ctgaagaccg aaaagcgacg ccagcccggc attttcggag ccgctgcggc
      181 tgcgcgacgt ggtgttgtcg acgctggcgc gatcggcgac gttgatgcgg atagtgacga
      241 tatcccccac cgcggccgcg cgttggtcgc ggaaaaggtc gccggcgccc ggtcggaaga
      301 gcgaggcgct ggacgctgta tgcggcgctt gcgggacagt atggccggcc tggctgcttg
      361 cgatctgatc aacgacgttg gggtgcgcga gcgaacgttc ggctgtcgca gccggaagtt
      421 cttcctgtgg cgtaaacttt ggcgcgcggc cgacattcgc cagtcgcccc gccgtgccgc
      481 agccgccgac cagagggatt aacatcatcg cgacaacaga tttcgagatt ttcatcggat
      541 gaactccagg agtcgatcga ttatcagggg gccgagattc gtacggcgcc cgatccttcg
      601 accacgccat ccaacgtgcg gttggtcgag gcgaccacgc ggacgagctc gccggccgcg
      661 ccattgccga gggcgcggcc ggccgtggta atcgtcagcc cccccgagcg catggtgatg
      721 gtcaccggct cgccgcgccg caccagttgc ggcttggtga cgtctgtcgc gcgcacaatc
      781 gtaccttcca tcaggcggtg cgcggcctcc atgcccttgg ccgcttgcgg cgaaagggcg
      841 ccgcgcgcct gcgcggccgc gcgctctgcg gtcgtgaagt gatcgaggga caggatttcg
      901 ccgcgctcga cagcacgggt gaggaccggc acatccacaa gcggaggcgc cgaggccaca
      961 accagttgtg aaaggagaag cgtcagcatc cgctcaccgc atctggctgg tcgttgccag
     1021 catctcgtcc gccgtcttca cgacgcggct gttcatttca tatgcgcgct gcgcggtgat
     1081 caatgccgtg atctccgcga ccggattaac gttcgatgcc tccagaaagc cttgacgcag
     1141 cgtgccgaag cccgggtccc ccggcgcggc gatcgtcgcc gggcctgatg ccggcgtctc
     1201 ggcaaaaagg ttaccgccga gcgcctcgag gccggcctgg ttgacgaacg tggcaagctg
     1261 gagctggccg acctgctgaa gctgcgggtt gcccggcacc ttgatctcga cattgccggt
     1321 cgccgaaatc acgacgtcgg tcgcatcttt gggaatcgtg atgcctggct ggaccggata
     1381 gccgtcggcc gtgacgagct cgcccaagtc cgagacctgg aacgagccgg cgcgggtata
     1441 agcgagattg ccgttgggca gggtgatctg gaaatagccg tcgccctcga tcgcgacatc
     1501 gtaccgattg tcggtctggg tcagcgcacc ctgctcgccg atccggtaaa cgccgccggt
     1561 gcgaacgccg gcgccgatct gaatgccgga cggcgcgcgc gagtcctggc tgcctgtgct
     1621 ggcgccgggg cgcgcgactt gctggtacag caggtcctgg aattcggccc gctgccgctt
     1681 gaacgcagtc gtgttcatgt tggcgatgtt attcgagatg acgtcgacat tggtctgctg
     1741 ggcaagcatg ccggtggcag cgattgacaa ggaacgcatg gatcggaccc tttttatgga
     1801 ttgattatga accagcgcgg ctgagctgct cgatcgcgcg cttgcgcatg tcatcgagcg
     1861 aagccgaaag ttgttggctg gtctgatagg agcgcagaat ctcgaccatc gccgtggttt
     1921 cggcgatcgg ctggacattg gacccttcga ggccgccact gcgcagacgc gtctcgccag
     1981 gcgtgggtgg ccggccgccc tggcccgtca tcatgccgtc gcccctgggg gataccgccg
     2041 cttctgagtc gaagatcgtg atggcgaggc ggcccagtgg accttggagc ccgctgaccg
     2101 taccgtcctc cgcgatcctg agttg
//
LOCUS       DASQVK010000225         7131 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_457584,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000225 DASQVK010000000
VERSION     DASQVK010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 7131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7131
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_457584"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(36..737)
                     /locus_tag="VE567_04855"
     CDS             complement(36..737)
                     /locus_tag="VE567_04855"
                     /inference="COORDINATES: protein motif:HMM:NF021492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYZ48205.1"
                     /translation="MAVPPQTNEAFLREVDEELRRDELARLWTRWGRAFVAAIALGLL
                     ALAAFLWWRDYRAKEAGLEGEKLTTVVEQLSQSQVDRATPAIKELAHSPRPGYRATAQ
                     LAQGAVASQRGDDRLAVTAFAAVAADKKVGQPFRELALIRQTTIEFDKLPPDQVIARM
                     QPLAKKGSPWFGSAGELLAAAQLKSGRAKDAGATFAALAADPATPASLRSRAAQMASV
                     LGADINPAALSRLAR"
     gene            complement(801..1658)
                     /gene="panB"
                     /locus_tag="VE567_04860"
     CDS             complement(801..1658)
                     /gene="panB"
                     /locus_tag="VE567_04860"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HYZ48206.1"
                     /translation="MSTTYTLDTSTSRAHPTPAPMKRLTVPQIAARKSGEPLVMLTAY
                     TARMAQLLDPHCDILLVGDSLGQVIYGLPSTLPVSLDMMCAHGAAVVRGSYHAVVIID
                     MPFGSYEASPEHAFTSAARILAETGAAGVKLEGGEAMAPTIAFLAQRGVPVMAHVGLT
                     PQAVNALGGYGARGRSNAEHAKIIADARAVAEAGAFALVAEGVVEPLARALTAEVSCP
                     VIGIGASPACDGQVLVTEDMLGLFERTPRFVKRYADMAALVGEAAAAYAQEVRARSFP
                     TPDQTYAPK"
     gene            complement(1688..2161)
                     /locus_tag="VE567_04865"
     CDS             complement(1688..2161)
                     /locus_tag="VE567_04865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006022632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HYZ48207.1"
                     /translation="MSGGLSAGIILFRRSGACPEVLLVRPGGPYWRRKDIGAWQIPKG
                     AVEPGEEPLDAAFREAEEELGLRPVGEPLPLGRIRQTGGKLVEAYAVEAPFEPAKLKS
                     ILFEMEWPPRSGRFQHFPEVEEARWFTLAEARERMLPSQQPLLERLEQVLDGQDW"
     gene            complement(2158..2577)
                     /locus_tag="VE567_04870"
     CDS             complement(2158..2577)
                     /locus_tag="VE567_04870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary thiamine-phosphate synthase enzyme
                     YjbQ"
                     /protein_id="HYZ48208.1"
                     /translation="MRQATGQIEIATAGKGLVEITDRVCAWAGAQGIGEGLLTLFCRH
                     TSASLIVQENAAPEVRGDIERYFERLAPEDPMAYAHDDEGADDMPAHLRAALTGVHLS
                     IPLIGGRLALGSWQGIYLFEHRRRPHRRSIALHLLGA"
     gene            complement(2579..3418)
                     /locus_tag="VE567_04875"
     CDS             complement(2579..3418)
                     /locus_tag="VE567_04875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYZ48209.1"
                     /translation="MLRKLTFLLLLTAAAAPLAAQSAPSLDARVNRIEKELRAVQRKV
                     FPDGQPLEPEIAPPAPAPQVPGTPATSPVADLTARVDAIEAQVRSLTAQAEQNDHRVG
                     QLEEQVKQLQAEAQARAAVPVAPAAPSAPAPTAEPAPAPPGVERPSTGDAAEDSYLYG
                     FRLWQAKMFPEAEAELKRVAETYPEHRRASFAQNLLGRAYLDEGKPALAAVALYDSYK
                     KWPKGERAAESLYWLGQALTQLKKPADACKVYAEFGDVYGATAAAGLKAQVAAGRKQA
                     KCA"
     gene            complement(3504..4652)
                     /locus_tag="VE567_04880"
     CDS             complement(3504..4652)
                     /locus_tag="VE567_04880"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011542136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-hydroxy acid oxidase"
                     /protein_id="HYZ48210.1"
                     /translation="MRLTDCHNCEDFRALARRRLPGPIFHYIDGAADDEITKARNTAA
                     FDDCDLVPRVLAGVEQVDMRTTLMGREVAMPLFFSPTALQRLFHWQGERAVGAAAEKF
                     GTWFGISSLATVSIEEVGRTIRSPKLFQLYVHKDQGLNRSMVERCKAAGFDAIALTVD
                     TIVGGNRERCLRTGFTSPPRLTARSALSFATHPGWTLDYVFRERFALPNLETHVAQGT
                     RVALSVADYFSTMLDQSMDWKAAERIRADWGGAFCLKGVMSAEDARRAVDIGATAIMV
                     SNHGGRQLDGSRAPFDQLAEIVDAVGDRIEVICDGGVRRGTHVLKALSLGAKACSGGR
                     FYLYALAAAGQPGVERAMGKLRAEIERSMKLMGARTLADLGRGNLRWR"
     gene            complement(4782..6209)
                     /locus_tag="VE567_04885"
     CDS             complement(4782..6209)
                     /locus_tag="VE567_04885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48211.1"
                     /translation="MRFEELAAEQARAARMMTTGGDARIVLDPKRDQNRYYSAPFPQD
                     ALAYASSTANDISADAFAHVSGLPEQDYAEGLEALRRRIRAAYSVPDDVAIVFAPSGT
                     DLEYVALACAHDRAERLHNVLLGADEVGSGCIHSAHGRFFATETALDANVAPGEPVPG
                     LGERVTIEDVPVRDTLGHAFTSVAIRDRIEQGIDGAGEAHALIHVVHGSKTGLILPLL
                     DDIDGLVARHGDRMTLVVDACQARITSAAIGDYLKRDAIVFVTGSKFMGGPPFSGFAL
                     VPRALAARAPKLPEGLAAVFRRAEWPAGWPGAEALEDSANPGLLLRLEASVFELERFQ
                     LLSLKRVTRVILAFHAAVRAAMVERLGGRRMAPYPPGQRAEGDAHPIEMRTLSTIDLS
                     RRAGRPDFDDAVRLHKALVERGIRLGQPVKCVRLEDGRWGATLRLGLSMPQVVAFDWL
                     DDAMLEAKLAADMDRIAGAIEELSP"
     gene            6263..>7131
                     /locus_tag="VE567_04890"
     CDS             6263..>7131
                     /locus_tag="VE567_04890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide synthetase"
                     /protein_id="HYZ48212.1"
                     /translation="MPRGFYVAFMTVQPLTIPQEAKDRLRIMYIAKHAKWTGGLHPED
                     GNHALYHVEVRTILQQLGLDLVLADKYDALFENPGVDFVFPLLNRGGFLNSEMMLPLL
                     CTRLGLPYLGATPILRGLSDDKHLSKLCAKARGIPTAPWKIFRRGAPVTEDGAPMAER
                     MVIKPNASSASWGVMDAHDWAGVARAVAEIHDMGHDAIMEPFLNGSDVEVPVITVGGQ
                     SVVMPMMLFEQADPSHLRTYYEKRDLVERVQKYQLVDFEDAKLQPVIDDLTRKLIGEF
                     FPFDYGRYEFRVD"
BASE COUNT         1147 a         2503 c         2312 g         1169 t
ORIGIN      
        1 cgccgccagg accaggggca cgcgaacgga acggatcatc gggcaagtct cgacaaggcg
       61 gcagggttga tgtcggcgcc caatacgctt gccatctgag cagcgcgtga acgcaggctg
      121 gccggcgtcg ccggatcggc ggcgagcgcg gcgaaggttg cgccggcgtc cttcgcccgg
      181 cccgatttca gctgggcggc ggcgagcaat tcgccggccg agccgaacca cgggctgcct
      241 ttcttcgcga gcggctgcat ccgcgcgatc acctgatcgg gcgggagctt gtcgaactcg
      301 atggtcgtct ggcggatcag cgccagctcg cgaaagggtt ggccgacttt cttgtccgcc
      361 gccacggcag caaaagccgt taccgcaagc cgatcgtcgc cccgctgcga agcgacggcg
      421 ccctgggcca gctgcgccgt ggcgcggtag cccggccgcg gcgagtgcgc gagttccttg
      481 atcgcaggcg ttgcccggtc cacctggctc tgcgacaatt gttcgacgac agtcgtgagc
      541 ttttcgccct caagccccgc ctctttggcg cggtaatcgc gccaccacaa aaaggcggcg
      601 agagcgagca ggcccagcgc gatcgcggcg acgaacgcac ggccccagcg cgtccacagc
      661 ctggccagtt cgtcacgccg cagctcttcg tcgacttcgc gtagaaatgc ctcgttcgtc
      721 tgcggcggta cggccaaacc tggtctcctg ggggtgaagc ggcgcggacc ttagcggcgg
      781 cctttggata acggaagccg ctacttgggg gcgtaggtct ggtccggggt ggggaagctg
      841 cgcgcgcgca cctcctgggc ataggctgcc gccgcctcgc caaccagcgc ggccatgtcg
      901 gcgtaacgct tcacgaagcg cggcgtgcgc tcgaacagcc cgagcatgtc ttcggtcacc
      961 agcacctggc cgtcgcacgc cggcgacgcg ccgatgccga tcaccgggca ggatacttcg
     1021 gccgtcaggg cccgcgcgag cggctcgacg acgccttcgg cgacaagcgc gaacgcgccc
     1081 gcctccgcga ccgcgcgcgc gtcggcgatg attttggcat gttcggcatt gctgcgtccg
     1141 cgcgcgccat agccgccaag cgcattcacc gcctgcggag tgagcccgac atgcgccatg
     1201 accggcacgc cgcgttgcgc cagaaaagca attgtcggcg ccatcgcctc gccgccttcc
     1261 agcttgaccc cggcggcgcc ggtttcggca agaatgcgcg ccgcggacgt gaaggcgtgc
     1321 tcgggcgacg cttcatagct cccgaacggc atgtcgatga ttaccactgc atgatagctg
     1381 ccgcgcacca cggcggcgcc atgcgcgcac atcatgtcga ggctgaccgg cagcgtcgag
     1441 ggcaagccat agatcacctg gcccaggctg tcgccaacca gcaaaatgtc gcaatgcgga
     1501 tcgagcaatt gcgccatccg cgccgtatag gcggtcagca tcaccaacgg ctcgccgctt
     1561 ttccgcgccg cgatctgcgg gacggtcagc cgcttcatcg gcgccggcgt cggatgcgca
     1621 cggctggtcg aggtatcgag cgtgtaggtc gtggacatgc ggtgcttttg cgcgtcttgg
     1681 cggaaattca ccagtcctgt ccgtccagca cctgttcgag ccgctccagc agcggctgtt
     1741 ggctgggcag catccgctcg cgcgcctcgg cgagcgtaaa ccagcgcgct tcctcgactt
     1801 cggggaaatg ctggaagcgc ccgctccgcg gcggccattc catttcgaac aggatgctct
     1861 tcagcttggc gggctcgaac ggcgcttcga cggcataggc ctcgaccaat ttgccgccgg
     1921 tctgccggat gcggcccagc ggcagcggct cgccgacggg acgtagcccg agttcctcct
     1981 cggcctcgcg aaaggccgcg tcgagcggct cctcgccggg ctcgaccgca cctttgggga
     2041 tttgccaggc gccaatgtcc ttgcgccgcc aatatgggcc gcccgggcgg accagcagca
     2101 cttcagggca agcccccgag cggcggaaca ggatgatgcc ggcgctcagg cccccgctca
     2161 tgcgccgagc agatgcaatg cgatggaccg ccggtgcgga cggcggcgat gctcgaacag
     2221 atagatgccc tgccagctgc ccagcgccag ccggccgccg atcagcggga tcgacagatg
     2281 cacgccggtc agcgcggcgc gcaaatgcgc aggcatgtcg tcggccccct catcgtcatg
     2341 agcataggcc atcgggtcct cgggcgcgag acgttcgaaa tagcgctcga tatcgcctcg
     2401 cacttcgggc gcggcatttt cctggacgat cagcgaagcc gaggtgtggc ggcagaacaa
     2461 ggtcagcagg ccttcgccga tgccctgcgc acccgcccag gcgcagaccc tgtcggtgat
     2521 ctcgaccagg cccttgccgg cggtcgcgat ctcgatttgg ccggtcgcct gcctcacctc
     2581 acgcgcactt cgcctgcttc ctgccggcgg cgacctgcgc cttcaggccg gcggcggcgg
     2641 tggcgccata gacgtcgccg aactccgcat agactttgca ggcgtccgcc ggcttcttga
     2701 gctgagtgag cgcctgtccc agccaataaa ggctctccgc cgcccgttcg cccttcggcc
     2761 atttcttgta gctgtcgtag agcgccaccg ccgccagcgc cggcttgcct tcgtccaaat
     2821 aggcgcggcc gagcagattc tgcgcaaagg aggcgcggcg gtgctcggga tatgtctccg
     2881 caactcgctt cagctcggcc tcggcctccg ggaacatttt cgcctgccac agccggaagc
     2941 cgtagagata gctgtcctcg gcggcatcgc cggtcgaggg gcgctcgacg ccaggcggtg
     3001 cgggcgccgg ctcggcggtg ggcgcaggtg cggacggcgc ggcgggcgcg actggcacgg
     3061 ccgcgcgtgc ctgcgcttcg gcctgaagct gcttcacttg ctcttcgagt tgaccgacgc
     3121 ggtggtcgtt ctgttccgct tgcgcagtaa ggcttcgcac ctgcgcctcg atcgcgtcca
     3181 cccgggcggt gaggtcggcg accggcgaag tcgcgggcgt gcccggaacc tggggcgccg
     3241 gagcgggcgg cgcgatctcg ggctccagcg gctggccgtc cgggaacacc ttgcgctgca
     3301 ccgcccgcag ctccttctcg atcctgttca cccgcgcatc caggctcggc gcgctctgcg
     3361 ccgcgagcgg cgcggccgct gcggtcagca ggagcagaaa agtcagtttt ctcagcatca
     3421 acgctcgttc cctttgcact gctcaggccg gcatcgccta tcgcgcctgt ccctatcctg
     3481 aagcaacgcc gccgcggaag cgcctatcgc catctaaggt tgcctcgccc aagatccgca
     3541 agcgtgcggg cgcccatcag cttcatgctc cgctcgattt ccgcgcggag cttgcccatg
     3601 gcgcgttcga cacccggttg gcccgcggcg gcgagagcgt agaggtagaa gcgcccgccc
     3661 gaacaggctt tcgcgcccag cgacagcgcc ttcagcacat gggtgccgcg ccgcacgccg
     3721 ccgtcgcaga tcacttcgat ccggtcgccg accgcatcga cgatctcggc gagctggtcg
     3781 aacggcgcgc ggctgccgtc gagctgccgg ccgccatgat tggagaccat gatcgcggtc
     3841 gcgccgatat cgaccgcgcg acgcgcatcc tcggccgaca tcaccccttt gaggcagaac
     3901 gccccgcccc aatcggcgcg aatccgctcg gccgctttcc agtccatcga ctggtcgagc
     3961 atcgtgctga aataatcggc aaccgacagc gcgactctcg tgccctgggc gacatgcgtc
     4021 tccagattgg gcagggcgaa acgctcgcgg aacacataat ccagcgtcca gcccggatgg
     4081 gtggcgaagc tcaaggctga gcgggccgtg agacggggcg gcgaggtgaa gcccgtgcgc
     4141 aggcatcgct cgcgattgcc gcccacgatc gtgtcgacgg tcagtgcgat cgcatcgaag
     4201 ccggccgcct tgcaacgctc caccatcgag cggttcagcc cctgatcctt gtgcacatag
     4261 agctgaaaca gcttcgggct gcggatcgtg cgcccgactt cttcgatgct gacggtcgcc
     4321 aggctcgaaa tgccgaacca ggtgccgaat ttctccgccg ccgctccgac cgcccgctcg
     4381 ccctgccagt ggaacagccg ctgcaacgcg gtgggcgaaa agaagagcgg catcgcaacc
     4441 tcgcggccca tcaaggtcgt gcgcatatcg acctgctcga ccccggcgag cacgcgcggc
     4501 accagatcgc aatcgtcgaa tgcggcagtg ttgcgcgcct tggtgatctc gtcgtccgcc
     4561 gcgccgtcga tatagtggaa gattgggccg ggcaggcgac gccgggcaag ggctcggaaa
     4621 tcctcgcagt tatggcagtc ggtcagtctc acgtccggat tcccccctcc gccgggccca
     4681 ctctgcctgt cttattccgt tcgcttcgcg cgaagtcgag aagccgttcg cgcggcgcgg
     4741 ccgtttctcg ccttcgctcg aaatgaacgg aggggagcag cctaggggga gagttcttca
     4801 atcgcgcctg caatccggtc catgtccgcc gccagcttcg cctccagcat cgcatcgtcc
     4861 agccagtcga acgccaccac ttgcggcatc gagagtccca gccgcaaggt cgcgccccag
     4921 cggccatcct ccagcctcac gcatttgacc ggctggccaa ggcgaatgcc gcgctcgacc
     4981 agcgccttgt ggagacgcac cgcgtcgtcg aaatccggcc tgcctgcccg gcgcgacagg
     5041 tcgatcgtgg agagcgtgcg catctcgatc ggatgcgcgt cgccttcggc gcgctgtccg
     5101 ggcggatagg gcgccatgcg ccgcccgccc agccgctcga ccatcgctgc gcgcaccgcc
     5161 gcgtggaacg cgaggatcac ccgggtcacc cgcttcagcg agagcagctg gaatcgctcc
     5221 agctcgaaca ccgaggcttc gaggcggagc agcaggccgg gattggcgct gtcctccagc
     5281 gcctcggcgc ccggccagcc agcgggccac tcggcccggc ggaacacggc ggccagcccc
     5341 tccggcagct tcggcgcacg cgcggccagc gcccgcggca ccagcgcgaa gccgctgaac
     5401 ggcggcccgc ccatgaattt ggagccggtc acgaacacga tcgcgtcgcg cttcagataa
     5461 tcgccgatcg ccgcgctggt gatccgcgcc tggcaggcgt cgaccaccaa agtcatgcgg
     5521 tcgccgtggc gggccaccag accgtcgata tcgtcgagca gcggcaggat cagcccggtc
     5581 ttggagccgt gcacgacgtg gatcagtgca tgagcttcgc ccgccccgtc gatgccctgc
     5641 tcgatccggt cgcgaatggc cacgctcgtg aaggcatggc cgagcgtatc gcgcaccggc
     5701 acgtcctcga tcgtcacccg ttcgccgagg cccggcaccg gctcgcccgg cgcgacgttc
     5761 gcatccagcg ccgtctccgt cgcgaagaaa cggccatgcg ccgaatgaat acaaccgctt
     5821 cccacttcgt ccgcgccgag cagcacatta tgcagccgct ccgcccggtc gtgcgcacag
     5881 gccagcgcga catattcgag gtctgtgccc gaaggcgcga agacgatcgc gacgtcgtcc
     5941 ggcacggaat aggcggcccg gatccggcgg cgcaacgcct ccagcccttc ggcataatct
     6001 tgttcgggca ggccgctcac atgcgcgaag gcatccgcgg aaatgtcgtt cgcggtggac
     6061 gaggcatagg ccagcgcgtc ctgcggaaaa ggcgcggaat aatagcggtt ctggtctcgc
     6121 ttcgggtcga gcacgatgcg ggcatcgccg cctgttgtca tcatccgggc ggcgcgggcc
     6181 tgctcggccg ccagctcttc gaagcgcatg gccggggttt aaccggcgct ccgacctatg
     6241 caagccgcgc atgcttggcg tcatgccgcg tgggttctat gtcgccttca tgacagttca
     6301 gccgctcacc attccgcaag aggcgaagga ccgcctccgc atcatgtata tcgccaagca
     6361 cgccaaatgg accggcggcc tgcatccgga agacggcaat cacgccctct atcatgtcga
     6421 ggtgcgcacg atcctgcagc agctcgggct cgacctggtg cttgccgaca agtacgacgc
     6481 gctgttcgag aatccgggcg tggatttcgt cttcccgctg ctgaaccggg gcggctttct
     6541 caattccgag atgatgctgc ccctgctctg cacgcggctg ggcctgccct atctcggcgc
     6601 aacgccgatc ctgcgcgggc tttccgacga caagcacctg agcaagctct gcgcgaaggc
     6661 gcgcggcatt ccgaccgcgc cctggaaaat cttccgtcgc ggcgccccgg tgacggaaga
     6721 cggcgcaccg atggccgaac gcatggtcat caagcccaat gcctcgtcgg cctcctgggg
     6781 cgtcatggat gcacatgact gggccggcgt cgcccgtgcg gtcgcagaaa tccacgacat
     6841 gggccatgac gcgatcatgg agccgttcct gaacggctcg gacgtcgaag ttccggtaat
     6901 taccgtcggc ggccaatccg tggtcatgcc gatgatgctg ttcgaacagg ccgatcccag
     6961 ccacctgcgc acctactacg aaaagcgcga cctggtcgag cgtgtccaga aataccagct
     7021 cgtcgacttc gaggatgcga agctccagcc cgtcatcgac gacctcaccc gcaagctgat
     7081 cggcgaattc ttccccttcg attatggccg ctatgagttc cgggtcgatt t
//
LOCUS       DASQVK010000226         5948 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_172746,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000226 DASQVK010000000
VERSION     DASQVK010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5948)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5948)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5948
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172746"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..873
                     /locus_tag="VE567_04895"
     CDS             <1..873
                     /locus_tag="VE567_04895"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HYZ48213.1"
                     /translation="MPFFFLLSGVLVQARIERDAPGFGRSLFTRIAWPYFLWSTVQLV
                     IIHLLGTLANRPVEDVVHPILSLPWQTVSQFWFLYALFVLHGLALLTLRPLGASGFLA
                     LCIAFKVACVLLPVPEALRAAGNQAPYYALGVALGAEGLRRIAAASPAWLTLPLVCAA
                     AAAALGAALFLTIAAHPDMLRASAGKVTSLAWRPAMIPVALLCVLAAAMLAAIAAGRL
                     KDGLVLLGRRAMAIYILHIMAIAGLRIVAMKLFGIGNAWALLPVLVMAGIVAPLIAYA
                     VAKRLGLARALTLD"
     gene            880..1980
                     /locus_tag="VE567_04900"
     CDS             880..1980
                     /locus_tag="VE567_04900"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HYZ48214.1"
                     /translation="MDRLFVINGKFLRVPSTGVHRVAHELANGLAALSAEGHPEVAGM
                     RFELWTPHDGVERARDIALPLKVIGPLTNIPWEQLTLPLRQQEATLVNLCNIGPMLSR
                     RAVTMIHDVQVHLSPQSYSRGFRAWYHFVQPRFARRHRRILTVSHFSADEIARVGLAP
                     ANKIGVIHNGADHVARVEADDTILERLRLRHGRYVVALASTQAHKNIRVLLEAADRLA
                     ASGLKLVLVGGTNADAFAAAGLRLAPNVRLTGRISDEQLRALYEKALCLAFPSTTEGF
                     GLPPLEAMTLGCPALVAPCGALPEVCGQAADYVDPHAPSAWAAAIERLLKDPSRHAAM
                     AVASRDHAAGFTWRRAALQLAQELRHVSDVNR"
     gene            2129..3790
                     /locus_tag="VE567_04905"
     CDS             2129..3790
                     /locus_tag="VE567_04905"
                     /inference="COORDINATES: protein motif:HMM:NF015803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HYZ48215.1"
                     /translation="MAVAAIQEAIPDSAQPAPAGPANANQQVERAPDRFPVYAIDVLG
                     VTKLPAGEVERLIYPYLGPDKSGPDIEAARAAIQKAYTDRGYEAVVVEIPAQTTERFA
                     QGIVELRVSEAPVGQVRVVENKYHSAGGVRSQVPSVREGQPLNLQALQRDIEVANQFP
                     DRQVTPSFKPGTEPGTIDVDLTVQDKFPLHSSVELNNDNSPSTERLRLVGNTRYTDVW
                     GLGHTASIGFVLSPEDRHQSSVISGSYLAPLQGTPWSVLVYGYRSNSNIAALGGTNVL
                     GNGYQIGLRAIYRVPSRDSVQSVSFGPDYKSFKQDILVGIVNAASTPIRYVPLTLEYN
                     FASTDDESAFAKAFGPSSFDATFGTTFGVRAIKRVICFDHDNDPRTPCLPVDQFQNRE
                     VDSFENFVHFNAGFNYSLATKNDFILATRASMQLADSHLVTNEQFSAGGISSVRGYLQ
                     SEAVGDDGYVSGLELQSPSLGPEVGPWLSDLRFYGFVDSGVVRIRRAQPGQRSRYSLI
                     GAGAGFRIRLLDKLSGEMVLAIPLTDGLQTQKGDTRTVFVVRGEF"
     gene            3820..5589
                     /locus_tag="VE567_04910"
     CDS             3820..5589
                     /locus_tag="VE567_04910"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2341 domain-containing protein"
                     /protein_id="HYZ48216.1"
                     /translation="MARLLLAALAAIMLVTPANAWWNKDWAYRKPVSIDTTASGVNVS
                     GAIGRTLVLLRLHSGNFTFTEALDNGADIRIVDSDDKTPLPYHIEKYDAQNGLATVWV
                     SVPNLNGGEKKQLWLYFGNQNAPAGSDAKGSFDPDYQAVYHFGEGPGQPSADSTANGN
                     NAQNGPPGVNDSSAIGRGARFPGQGAVTVAPTPSLAIPAGSPFTLTLWVKPDQLAGEQ
                     AVFARGPMILGLNAGTPFVAIGAGRASATTALKQGEWAHLAVVADGGTVRIYVNGVEA
                     GAASTALPALDGPLSIGGADGRPFTGEIDEVRLSKTARPAGMILAMANAEGPSGKLVT
                     VADTAEKQGGGGMGVIPFIISKLEPVDTGVVVLCLLLLAGAIAVMVTKLRYLNNASRG
                     NKVFVKRFRDMHEELVSLARVPAISEAELKFITQSSPLGRLYEVGIEELEVRRRNAAT
                     RPLTAEAIEAMRAAVDAQVVAENQKFDNAMVLLTIAISGGPFIGLLGTVIGVMSTFGG
                     VAMAGDVNVNAIAPGIAAALLATIAGLAAAIPSLFGYNYLNSRISAMSDEMRVFVDRL
                     ITRLAEMQAEAAFSPPPERLAAE"
     gene            5602..>5948
                     /locus_tag="VE567_04915"
     CDS             5602..>5948
                     /locus_tag="VE567_04915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010217983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HYZ48217.1"
                     /translation="MQVGGKRKSYDDINITPMLDLAYVLLVIFILMATASVQGIKVDL
                     PKASSAVSLAQPKTIAITVNNEGQIFMDAFPVTLPDLETRLRNAKASNPDVPIVLKGD
                     ATAQYGKITEVLDL"
BASE COUNT          993 a         1971 c         1961 g         1023 t
ORIGIN      
        1 atgccgtttt tcttcctgct ctccggcgtc ctcgtgcagg cgcggatcga gcgggatgcc
       61 cccgggttcg gccgcagcct cttcacccgg atcgcctggc cctatttcct gtggtcgacc
      121 gtgcagctgg taatcattca cctgctcggg acgctcgcga accgcccggt cgaggacgtt
      181 gtccatccga tcctgtcgct accctggcaa acggtttcgc aattctggtt cctctatgcg
      241 ctgttcgtgc tgcacggcct tgcgctgctg accctgcggc cgctgggcgc gagcggattc
      301 ctggccttgt gcatcgcctt caaggtcgcc tgcgtcctgc tgccggtccc cgaggcgttg
      361 cgggcggcgg gcaatcaggc cccctattac gccttgggcg tggcgcttgg ggccgagggc
      421 ctgcgccgga tcgcagcggc ttctccggcc tggctgaccc tgcccctcgt atgcgccgcg
      481 gctgcggcgg cattgggggc agcgcttttc cttacgatcg ccgcacatcc ggacatgctg
      541 cgcgccagcg cgggcaaggt cacgtcgctc gcctggcgtc ctgcgatgat cccggtcgcg
      601 ctgctatgcg tgctcgcggc cgccatgctg gcggcgatcg cggccggcag gctgaaggat
      661 gggctggtcc tgctcggacg ccgcgcaatg gcaatctata tcctgcacat catggcgatc
      721 gccgggctgc gcatcgttgc gatgaagctc ttcggaatcg ggaacgcctg ggcgctgctg
      781 cccgtgctgg tcatggcggg gatcgtcgcg ccgctgatcg catatgccgt cgccaaacgg
      841 ctcggcctcg cgcgcgcgct gacgctcgac tgaccggcga tggacaggct gttcgtcatc
      901 aacggcaaat tcctgcgcgt gccgtcgacg ggcgtgcacc gcgtcgcgca cgaattggcg
      961 aacgggctgg cggcgttgag cgccgaaggc catccagaag tcgccggcat gcgtttcgag
     1021 ctctggacac ctcatgacgg ggtggaacgg gcgcgggaca tcgcgctgcc gctgaaggtg
     1081 atcgggccgc tcacgaacat cccctgggag caactgacgc tgccgctgcg ccagcaggaa
     1141 gcgacactcg tcaatctctg caatatcggc ccgatgctca gccggcgcgc cgtcacgatg
     1201 atccacgacg tgcaggtaca cctgtcgccc cagtcctatt cgcgcggttt ccgggcctgg
     1261 tatcacttcg tgcagccacg gttcgcgcgg cggcaccggc gtattctgac cgtctcgcac
     1321 ttttccgccg acgagatcgc gcgcgtcggg ctggcgcctg cgaacaagat cggcgtcatt
     1381 cacaatggcg ccgaccatgt tgcgcgagtg gaggccgacg acaccatctt ggaacggctc
     1441 cgcctgcggc acggccgcta tgtcgtcgcg ctggcgagca cgcaggcgca caagaatatc
     1501 cgcgtgctgc tcgaggccgc ggacagactc gccgcttccg gcctgaagct ggtcctggtg
     1561 ggcggcacga atgccgatgc cttcgccgcc gcggggctaa ggctcgcgcc caatgtgcgc
     1621 ttgaccgggc gcatctcgga cgagcagctg agggcattgt acgaaaaggc cctgtgcctg
     1681 gcgtttccct cgacgaccga aggattcggc ctaccgccgc tcgaggcgat gacgctgggc
     1741 tgcccggcac tcgtcgcccc gtgcggggcg ttgccggaag tctgcgggca ggcggccgat
     1801 tatgtcgatc cgcacgcgcc gagcgcctgg gccgcggcga tcgagcggct gctgaaagac
     1861 ccgtcgcggc acgcggcgat ggcggttgcg agccgcgatc atgcggccgg attcacctgg
     1921 cggcgggcgg cgctgcagct cgcgcaggag ctgcgacacg tcagtgacgt gaatcgttaa
     1981 caaatcggta acgctgatcc cgcgaaagcg acacactaac actgcatttg gaaagtgccg
     2041 gtcgcaagac tctagggggg cactcatttc cagtcggtcg tatcgcgtag cgttttcgct
     2101 gccttttctg ctgcttggcg gaaacgccgt ggccgtggcc gcgattcagg aagcgattcc
     2161 cgattcggca caacccgcgc cggctgggcc tgccaatgcc aatcagcagg tcgagcgcgc
     2221 gcccgaccga ttcccggttt acgccatcga cgtcctcggc gtgaccaaat tgccagccgg
     2281 cgaggtcgag cggctgatct atccctatct tggacccgac aagtccggcc cggacatcga
     2341 ggccgcgcgt gccgcgatcc aaaaggccta taccgatcgt ggatacgagg cggtggttgt
     2401 cgagattccg gcgcaaacga ccgagcggtt cgcgcaaggg atcgtcgagc tgcgcgtcag
     2461 cgaggcgccg gtcggccagg tccgggtcgt cgagaacaaa tatcactcgg ccggcggcgt
     2521 gcgatcgcag gtgccgtcgg tgcgtgaagg ccagccgctc aacctgcagg cgctgcagcg
     2581 cgacatcgaa gtcgcgaacc aatttccgga ccggcaagtc acgcccagct tcaaacccgg
     2641 gacggagccg gggacgatcg acgtggacct gaccgtccag gacaaattcc cgctccattc
     2701 ctcggttgag ctcaacaacg acaacagccc ctcgaccgag cggctgcgcc tggtcggcaa
     2761 tacgcgctat acggacgtct gggggctggg gcacacggcc tcgatcgggt tcgtgctgtc
     2821 acccgaagac cggcatcaga gcagcgtcat ctccggctcc tacctggcgc cattgcaggg
     2881 cacgccctgg tcggtgctgg tctatggcta tcgatcgaac agcaacattg cggcgttggg
     2941 gggcaccaac gtgctcggca acggctatca gatcggcctg cgcgccatct accgggtccc
     3001 cagccgcgac agcgtccagt cggtcagctt cgggcccgac tataagagct tcaagcagga
     3061 catcctggtc ggcatcgtca atgccgcgtc gacgccgatc cgctatgtgc cattgaccct
     3121 cgaatataat ttcgcctcga ccgacgatga gagcgccttc gccaaggcgt tcgggcccag
     3181 cagtttcgac gcgacgttcg gcaccacgtt cggtgtgcgc gcaatcaagc gggtcatctg
     3241 cttcgatcac gacaacgatc cgcgcacacc ctgcctgccg gtcgatcagt tccagaatcg
     3301 ggaagtcgac agcttcgaga acttcgtgca cttcaacgcg ggcttcaatt actcgctcgc
     3361 gaccaagaac gacttcatcc tcgcgacccg cgcgagcatg cagcttgccg actcgcacct
     3421 ggtcaccaac gagcaatttt ccgcaggcgg gatcagcagc gtgcgcggct atctccagtc
     3481 cgaggcggtc ggcgacgacg gctatgtatc cgggctggaa ctgcaatcgc catcgcttgg
     3541 gccggaggtc gggccgtggc tgtcggacct gcgcttctac ggttttgtcg attcaggcgt
     3601 cgtgcggatc cggcgggcgc agccggggca acgctcccgc tacagcctga tcggcgccgg
     3661 ggcgggcttt cgcattcggc tgttggacaa gctgagcggc gagatggtgc tcgccatccc
     3721 gctcaccgac ggcctgcaga cgcaaaaggg cgacacgcgc accgtgttcg tcgtccgggg
     3781 ggaattctga tgatgggctt tacgaagggg acgggacgga tggcgcgact gctgctcgcg
     3841 gcgctggcgg cgatcatgct ggtgacgcca gccaatgcct ggtggaacaa ggattgggcc
     3901 tatcgcaagc cggtctctat cgacacgacc gcgagcggcg tgaacgtgag cggcgcgatc
     3961 ggccgcacgc tggtgctgct gcggctgcac agcggcaatt tcaccttcac cgaagcgctg
     4021 gacaacggcg ccgacattcg gatcgtcgac agcgacgaca agacgccgct gccctaccac
     4081 atcgaaaaat acgacgcgca gaacgggctt gcgaccgtct gggtatccgt tcccaatttg
     4141 aatggcggcg agaagaagca gctctggctc tatttcggca accagaacgc gcccgccggc
     4201 agcgacgcca agggcagctt cgatccggat taccaggctg tctatcactt cggcgaaggg
     4261 ccgggccagc cgagcgcgga ttcgacggcc aacggcaaca atgcccagaa cggcccaccg
     4321 ggcgtgaacg acagctcggc gatcggccgc ggcgcccgct tccccggtca gggcgcagtg
     4381 acggttgcgc cgactccatc cctcgccatc ccggccggtt cgcctttcac gctgacgctt
     4441 tgggtcaagc cggaccagct tgccggcgag caggcggtgt tcgcgcgcgg gccgatgatc
     4501 ctggggctga acgccggcac gccgttcgtc gcgatcggcg ccggccgcgc gagcgccacg
     4561 acggcgctga agcaaggcga atgggcgcac ctcgccgtgg tcgccgacgg cggcacggtc
     4621 cgcatctacg tcaacggcgt ggaagcaggc gcggcgagca cggccttgcc ggcgttggac
     4681 gggccgctgt cgatcggcgg cgcggacggg cgtcccttca cgggcgagat cgacgaggtc
     4741 cgcctgtcga agacggcgcg tccggccggc atgatcctcg cgatggccaa tgccgagggc
     4801 ccatcgggca agctcgtcac ggtcgccgac acggcggaga agcagggcgg cggcggcatg
     4861 ggggtgatcc ccttcatcat cagcaagctc gagccggtcg ataccggggt cgtcgtcctc
     4921 tgcctgttgc tgctggccgg cgcgatcgcc gtgatggtca ccaagctgcg ctacctcaat
     4981 aacgcgagcc gcgggaacaa ggtgttcgta aagcgcttcc gcgacatgca cgaggagctg
     5041 gtgtcgctcg cccgcgtgcc ggcgatttcc gaggccgagc tcaagttcat cacccagtcg
     5101 tcgccgctcg gccggcttta cgaggtggga atcgaggagc tggaggtacg ccggcgcaat
     5161 gccgcgacgc gtccgctcac cgctgaagca atcgaggcga tgcgggcggc cgtcgacgcc
     5221 caggtcgtgg ccgagaacca gaaattcgac aatgcgatgg tgctgctcac catcgcgatt
     5281 tcgggcggcc cgttcatcgg gcttctggga acggtgatcg gcgtgatgag cacgttcggc
     5341 ggcgtcgcca tggccggcga cgtgaacgtg aacgcgatcg cccccggcat cgcggcggcg
     5401 ctgctcgcga ccatcgccgg cctggcggcc gccatcccct cgctgttcgg ctacaactat
     5461 ctcaacagcc gcatcagcgc gatgtcggac gagatgcgcg tcttcgtcga ccggctgatc
     5521 acgcggctgg ccgagatgca ggcggaagcg gccttttcgc cgccgcccga gcgcctggct
     5581 gcggaataag ggagaagcac gatgcaagtc ggcggcaagc gcaagtctta tgacgacatc
     5641 aacatcaccc cgatgctgga cctagcctat gtgcttctcg tcatcttcat cctgatggcg
     5701 accgcgtcgg tgcagggcat caaggtggac ctgcccaaag cgagctcggc cgtcagcctg
     5761 gcccagccca agacgatcgc catcaccgtc aacaacgaag gccaaatctt catggacgcc
     5821 tttccggtga cgctgcccga tctcgagaca cggttgcgca acgccaaggc ttccaacccg
     5881 gacgtgccga tcgtgctgaa aggcgatgcc accgcccaat atggcaagat caccgaagtc
     5941 ctggacct
//
LOCUS       DASQVK010000227         2151 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_428703,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000227 DASQVK010000000
VERSION     DASQVK010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2151)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2151
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_428703"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(139..1539)
                     /gene="mgtE"
                     /locus_tag="VE567_04920"
     CDS             complement(139..1539)
                     /gene="mgtE"
                     /locus_tag="VE567_04920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010542758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter"
                     /protein_id="HYZ48218.1"
                     /translation="MSETELSNPPEPETQLDEDDRLKPEFVRAVVERLEEGDEDGARV
                     LVAPLHPADIADLFELAPSEWRRPLAAALKDLLDGDVFAEMNDYVREDLIDELDAAQV
                     ADIASELDTDDAVAIIEDMEPAEQREVLRAMEPDDRAAIEEALSYPEESAGRLMQREL
                     IAVPEHWTVGDVLDYLRSNDDLTTDFWEIFVVDPAHHPIGSCQLSWILRSPRTIPIAD
                     VMKREQTLIPVDMDQEEVALRFQKYALISAAVIDQAGRLVGMITVDDIVHIIQEEAGE
                     DILRLSGAGDGDINQPVRLTIKTRLTWLIVNLGTAILAASVVGLFQGEIGRFALLAVL
                     MPIVSGMGGNAGTQTLAVAVRALATNQLTESNTLRMFGREFTIASANGLALGVLIGTA
                     VGLIYAYPMLGLTIALAMLINNLVAGLAGILVPITLDRLRIDPAVSSAVFVTTATDVM
                     GFFSFLGLATVFHLGG"
     gene            1658..2113
                     /locus_tag="VE567_04925"
     CDS             1658..2113
                     /locus_tag="VE567_04925"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007013093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HYZ48219.1"
                     /translation="MAGDTLTLSLDTGGDVVIRLRPDLAPGHVERITELANEGFYDGV
                     IFHRVIDGFMAQGGDPTGTGTGGSDKPDLKAEFNAEPHVRGVCSMARTPNPNSANSQF
                     FICLDDATFLDRQYTVWGVVESGMEHVDALPKGEPPRQPGKIVKATLSE"
BASE COUNT          370 a          740 c          681 g          360 t
ORIGIN      
        1 aagcgcgtgg tgatccgcac cgtgctgccc tcggcccgcg ccgccacgcg cgcggcgagc
       61 gcttcgacgc tcgcgcagcc gaccgccact ttcgacaggt gaagcatggc cgtgaagtgg
      121 cgtgcgcccg cccgcgcttc aaccgcccag atgaaagacc gttgcgagcc caaggaagct
      181 gaaaaagccc atcacatcgg ttgcggtcgt cacgaacacg gcggacgaca ctgccggatc
      241 gatgcgcagc cggtcgagcg tgatcggcac caggatgccc gccagccccg cgaccagatt
      301 gttgatcagc atggcaagcg cgatcgtcag gcccagcatc ggataggcat agatcagtcc
      361 cactgcggtc ccgatcagta cgcctagcgc caggccgttc gcgctggcga tggtgaattc
      421 gcgcccgaac atgcgcaagg tgttcgattc ggtgagctga ttggtggcga gcgcccgcac
      481 cgccacggcc agcgtctgcg tgccggcatt gccgcccatg ccggagacga tcggcatcag
      541 caccgccagc agcgcgaacc gcccgatttc gccctggaac aggccgacga ccgaggccgc
      601 cagaatggca gtgccgaggt tcacgatcag ccaggtcaac cgcgtcttga tcgtgaggcg
      661 caccggctgg ttgatgtcgc cgtcgccggc gccggacagg cggaggatat cctcgcccgc
      721 ttcttcctgg atgatgtgga cgatatcgtc gacggtgatc atgccgacca gccgccctgc
      781 ctgatcgatc accgcggccg aaatcagcgc atatttctgg aagcgcagcg ccacttcttc
      841 ctggtccatg tcgaccggga tcaaggtctg ctcgcgcttc atcacgtccg cgatggggat
      901 ggtgcgcggc gatctcagga tccagcttag ctggcacgag ccgatggggt gatgcgccgg
      961 atcgacgacg aagatttccc agaaatcggt cgtcaggtcg tcattgctgc gcagatagtc
     1021 gagaacgtcg ccgacggtcc aatgctcggg caccgcgatc agctcgcgct gcatcaggcg
     1081 gccggcggac tcctctggat aagacagcgc ttcctcgatg gcggcgcgat cgtccggctc
     1141 catcgcccgc agcacttcgc gctgctcggc cggctccatg tcctcgatga tcgcgaccgc
     1201 gtcgtcggta tcgagctcgg acgcgatgtc ggccacctgt gccgcatcga gctcgtcgat
     1261 caggtcctcg cggacgtaat cgttcatctc ggcgaagacg tcgccgtcga gcaggtcctt
     1321 gagcgccgcg gcgagcggcc ggcgccattc ggagggcgcc agctcgaaca ggtcggcaat
     1381 gtcggcgggg tggagcgggg cgaccagcac gcgcgcgccg tcctcgtcgc cttcctccag
     1441 ccgctcgacc accgcgcgga cgaattcggg cttcagccga tcgtcctcgt cgagctgagt
     1501 ctcgggttcg ggcgggttgc tgagttcggt ctcgctcatc gccgcctcct ttgcttggcc
     1561 cgacagaggc ttaggcccga gcgtggcgca aaggcaatcc ttccatcccc gccgcacgtc
     1621 tctatatgga ccgcttcact tttttcggag accgaccatg gccggcgaca cgctgactct
     1681 ttccctcgat accggcggcg atgtcgtcat ccgccttcgc cccgatctcg cgcccggcca
     1741 tgtcgagcgg atcaccgagc tcgccaatga aggcttttac gatggcgtga tcttccaccg
     1801 cgtgatcgac gggttcatgg cgcagggcgg cgaccccacc ggcaccggca cgggcggctc
     1861 cgacaaaccg gacctgaagg cggagttcaa cgccgagccg cacgtccgcg gcgtctgctc
     1921 gatggcccgc acgcccaacc cgaacagcgc gaacagccag ttcttcatct gcctggacga
     1981 cgcgactttc ctcgaccgcc aatacacggt ctggggcgtg gtcgagagcg gcatggagca
     2041 tgtcgacgcc ctccccaagg gcgagccgcc gcgccagccc ggcaagatcg tcaaggcgac
     2101 actgagcgaa taaggcgctt catcccccgt cccaaaacaa aaggggccgg c
//
LOCUS       DASQVK010000228         5205 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_394522,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000228 DASQVK010000000
VERSION     DASQVK010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5205)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5205
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_394522"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1227
                     /locus_tag="VE567_04930"
     CDS             <1..1227
                     /locus_tag="VE567_04930"
                     /inference="COORDINATES: protein motif:HMM:NF013731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HYZ48220.1"
                     /translation="LDNRPGAGLRTIIRVPLTLTIIASLTVSAGGQSFAIPRAAIEEI
                     VHVSNNSIRIDNLGDACFATIRGRTLPLLHLEQVLGLGRVEDTAGRTIVVANAGAGLS
                     YALCVQAVHDHEELVIKPASPAVMGTGVYAGMSLPDTGVPMLLLDAAGIAARAGIEPE
                     EANPILALNRESVEEVGPELTSTLLFRDLDGRPRGIRLGIVERLEDVRADRIAFTGGR
                     LRVAIEDRLLPLIGCDEARLAGVQTVKLLRLNDGSYEIAYAIGDVIDIVQLPPVMERA
                     SAEGPIAGVALVDGEQVELIDLFWLFAHAEKPVATPEVRPLCLLAEPDDRWSREILRP
                     LLEAAGYRVGFVGDEGMEGEADVVVAGAAPVEAVKAPVIRLRPDMAGANDGSIYRYDR
                     MGLLAAIESQVAKRRG"
     gene            1227..1658
                     /locus_tag="VE567_04935"
     CDS             1227..1658
                     /locus_tag="VE567_04935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HYZ48221.1"
                     /translation="MEKLYLIATIAGQSVAIRASLVDSVVDLGSIAPVPLAPGHIAGL
                     AALRSKVLTVICCERSLGIAQCAPGLRRAVVVNIDGHFYGLLVSSIEDARLIEEPPQP
                     IRTRLETGWARVAVGMLEYEGEALLLIDPERIVAGQEALAA"
     gene            1766..2131
                     /locus_tag="VE567_04940"
     CDS             1766..2131
                     /locus_tag="VE567_04940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYZ48222.1"
                     /translation="MKTCLVVDDSKVIRKVARHILETLDFQVSEAGDGKDALEHCEAS
                     PPDVVLLDWNMPVMTGMEFLKALSATNLSKRPKVVFCTTENGIGHIKAAIEAGADEYV
                     MKPFDRDTIASKLQIVGLA"
     gene            2145..3239
                     /gene="cheB"
                     /locus_tag="VE567_04945"
     CDS             2145..3239
                     /gene="cheB"
                     /locus_tag="VE567_04945"
                     /EC_number="3.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0008984 - protein-glutamate methylesterase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis-specific protein-glutamate
                     methyltransferase CheB"
                     /protein_id="HYZ48223.1"
                     /translation="MPPRAMTSAKRTAAAAKPIRLLIVDDSAVARAVFSRMVGERPEF
                     QIAATVASAEAALAFLAVDRVDIIILDIEMPGQDGLSAMPALIEASRGARVLIVSSSA
                     EQGAAASIRAMTLGAADTLAKPGIGSFNGRFAEILSERLVRIGHARETTAHRERMGKA
                     PPPILLRTMNQSRVACVAIGASTGGLHALSDLLRGLPASFAPPILITQHLPPSFMTIF
                     AAQIRDMSGRPTSVARPGMALARGKILVAPGDGHLTIEVANGLPRVRITNERAESGCL
                     PSVDPMLASAAEVFGTGAVGVVLSGMGRDGVRGAERMAALGGDIFVQDRESSVVWGMP
                     GTVAQAALASAMLPPFQIADLLARRDKVAA"
     gene            3236..4069
                     /locus_tag="VE567_04950"
     CDS             3236..4069
                     /locus_tag="VE567_04950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010336704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008983 - protein-glutamate
                     O-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HYZ48224.1"
                     /translation="MSIDSGSLKLLAKLLEQRTGQQIGPNRLWRVETMLKALMRRRGI
                     PTLEALIAELGSGRDPALAAEAVEALLNNETFFFRDAQSFELLRLGAFETLRQARASI
                     RQLNIWCAGCSTGQEAYSLAMMFADAPAKWGDWRIDITATDVSETAIEKARAGYYSQF
                     EIQRGLPVGTMLRWFDQVGGDWRVKSELARYLRFRRHNMLTAQTGRFDLILCRNVMLY
                     FSPERRREAFDRLAGSLEPDGYLMLGAGETVIGQTDAFISAPELRGLYRRSAAAVAKV
                     A"
     gene            4157..4528
                     /locus_tag="VE567_04955"
     CDS             4157..4528
                     /locus_tag="VE567_04955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48225.1"
                     /translation="MADDSAIKRLIRSAFGSIWSIELLLVLKQRPDHFWTRAELIATL
                     RASEEVLARSSADLRTAGLILVDEEQRVRFGPASPELEEAVEAVASLYARRPAAVRRL
                     IVGGDDAIVNFADAFRFRRGD"
     gene            4528..4815
                     /locus_tag="VE567_04960"
     CDS             4528..4815
                     /locus_tag="VE567_04960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011906743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5985 family protein"
                     /protein_id="HYZ48226.1"
                     /translation="MFGVVDTWFPAAVYLLCFLTSAACAWLLMRSYLRARAQMLFWSA
                     LCFALLALNSMLVVLDLLIARDIDLGLYRLMASLAAVSVLIFGFVWRGDEA"
     gene            4812..5078
                     /locus_tag="VE567_04965"
     CDS             4812..5078
                     /locus_tag="VE567_04965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011906744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5985 family protein"
                     /protein_id="HYZ48227.1"
                     /translation="MTGDLSVFLSGAITFGFFVAGLFFLRFWRRTGDGLFLAFAAAFA
                     LLGINQALLIFSGIPVEERSPLYLLRLLAFLLIIGAIVRKNARD"
BASE COUNT          809 a         1645 c         1751 g         1000 t
ORIGIN      
        1 ctcgacaatc ggcccggcgc gggcttgcgc acgatcatcc gggttccgtt gacgctgacg
       61 atcatcgcct ccctgaccgt atcggcgggc gggcaatcct tcgcgattcc gcgcgcggcg
      121 atcgaggaga ttgtgcatgt ctccaacaat tcgatccgca tcgataatct tggcgacgcc
      181 tgcttcgcga cgatccgcgg gcgtacgctg ccgctgctgc acctggaaca ggtactgggc
      241 ctcggccggg tggaggacac cgccggccgc acgatcgtcg tcgccaatgc gggagcgggc
      301 ttgtcttacg cgctctgcgt tcaggcggtg cacgatcatg aagagctggt gatcaagccc
      361 gcctcgccgg cagtcatggg aacgggcgtc tatgccggca tgtcgctccc cgataccggc
      421 gtgccgatgc ttttgctcga cgccgcgggg attgcggcgc gcgccgggat cgagcctgag
      481 gaagccaatc cgatcctcgc cctcaatcgc gagagcgtgg aggaagtcgg accggaactc
      541 acttccaccc tgctgttccg cgatctggat ggccggccgc gtggcatccg gctgggcata
      601 gtcgagcggc tggaggatgt acgcgcggac cgcatcgcgt ttaccggggg ccggctccgc
      661 gttgcgatcg aggatcggct gctgccgctg atcggatgcg atgaggcgcg gcttgccggt
      721 gtccagacgg tgaagctgct gcgcctcaat gacggctcct atgagattgc atacgcgatt
      781 ggcgacgtga tcgacatcgt tcagcttccc cctgtcatgg agcgggcgag cgccgagggt
      841 ccgatcgccg gtgttgccct ggtcgatggc gagcaagtcg aactgatcga cctgttctgg
      901 ctgtttgctc atgccgaaaa gccggtcgca accccggagg tgcggccgtt gtgcctgctc
      961 gccgagccgg acgaccgttg gtcacgcgaa attctgcggc cgctgctgga agcggcgggt
     1021 tatcgcgtcg gcttcgtggg cgacgaaggc atggagggcg aggccgacgt ggtcgtcgcc
     1081 ggtgcagcac cggtcgaagc agtgaaggcg ccagtgatcc ggctgcgccc ggacatggcg
     1141 ggcgccaatg acggcagtat ctatcgctac gaccgcatgg gcctgctcgc ggcgattgag
     1201 agccaggtcg cgaagcggag gggctgatgg aaaaactgta tctgatcgcg accatcgccg
     1261 gccagtccgt ggcgatccgc gcgtcgctgg tggattcggt ggtcgacctg gggtcgatcg
     1321 ccccggtccc gctggcgccg gggcatatcg ccggcctggc ggcactccgc agcaaggtgc
     1381 tgacggtcat ttgctgcgag cgctcgctcg gcattgcgca atgcgcgccg ggcctgcggc
     1441 gcgcagtggt cgtcaacatc gatggccatt tttacggttt gctggtcagt tcgatcgaag
     1501 acgctcgatt gatcgaggaa ccaccgcagc cgatccgcac gcggcttgag accggctggg
     1561 cacgcgttgc cgtcggcatg cttgaatatg aaggggaggc gctgctgctg atcgatcccg
     1621 agcggatcgt tgccggtcag gaagctctcg ccgcgtaacg cgccacgctg gagcccgagc
     1681 cgtggtcctg cttccagcgc tttaacctcg tccttactct cgcccgctag aagcatcccc
     1741 gcaaagcaga atcgagtatg cgcttatgaa aacttgtctc gtggttgacg actccaaagt
     1801 cattcgaaag gtcgcgcgtc atatccttga gacgcttgat ttccaggttt ccgaagccgg
     1861 ggacggcaag gacgccctgg agcattgcga agcatcgcca cctgatgtgg tgctgcttga
     1921 ctggaacatg ccggtgatga ccgggatgga atttctgaag gcgctgagcg cgaccaatct
     1981 gtcgaagcgc cctaaggtcg tcttctgcac gaccgaaaac ggcattggcc acatcaaggc
     2041 tgcgatcgaa gccggcgcgg acgaatatgt gatgaagccg ttcgaccgcg atacgatcgc
     2101 gagcaagctc cagatcgtcg gtctcgccta aaggcggctg ggccatgccg ccacgcgcca
     2161 tgacgagcgc caagcgcacg gcggcggccg ccaagccgat ccggttgctg atcgtcgacg
     2221 attccgcagt cgcgcgagcc gttttttccc gcatggtggg cgagcgcccc gaattccaga
     2281 tcgccgccac cgtcgccagc gccgaggcag cgcttgcttt tcttgccgtg gaccgggtcg
     2341 acatcatcat cctcgacatc gaaatgccgg gccaggatgg gctcagcgcg atgcccgcac
     2401 tgatagaggc cagccgcggc gcgagggtgc tgatcgtttc ctcctcggcg gaacagggcg
     2461 cggccgcgtc aatccgcgcg atgacgctcg gcgccgccga cacactggcc aagcccggca
     2521 tcgggtcctt caatggccgt tttgccgaaa tcctgtccga gaggctggtg cgcatcggcc
     2581 atgcgcgcga aacgaccgca caccgcgagc gaatgggcaa ggcgccgccg ccgatcctcc
     2641 tgcgcacaat gaatcagagc cgcgtcgcct gtgtggcgat tggcgcatcc actggcggcc
     2701 tgcatgccct gtcggacctg ctgcgcggct tgccggcgtc gttcgcgccg ccgattctga
     2761 tcacgcagca cctgcctccc tcgttcatga cgatctttgc agcacaaatc cgcgacatgt
     2821 cgggccggcc gaccagcgtc gctcgccctg gcatggcgct cgcgcggggc aagattctcg
     2881 ttgcgccggg agacgggcat ctgaccatcg aagtggcgaa cggcctgccg cgtgtgagga
     2941 tcacgaacga gcgcgcggag agcggttgct tgccttccgt ggatccgatg ctggccagcg
     3001 cggccgaggt gttcgggacc ggcgccgtcg gcgtggtgtt gagcggcatg ggccgggatg
     3061 gcgtccgcgg cgccgaacgg atggcggcac tgggcggcga catcttcgtc caggaccgcg
     3121 aaagctcggt ggtttggggc atgcccggta cggtcgcgca agcggcgctg gcgagcgcga
     3181 tgctcccgcc gttccagatc gccgatctgc tcgcgcggcg ggacaaggtg gccgcatgag
     3241 catcgacagc ggctcgctga agcttctggc caagcttctg gaacagcgca ccggacagca
     3301 gatcggcccc aaccggctat ggcgggtgga aacgatgctc aaagcgctga tgcgccgccg
     3361 aggcatcccc acgctcgagg ctttgatcgc agagcttggt tcgggccgcg acccggcgct
     3421 cgccgccgag gcggtcgagg ctctgctcaa taacgagacc ttcttcttcc gcgatgcgca
     3481 gtcattcgag ctgctgcggc tcggtgcgtt cgagacgttg cgccaggcgc gtgcctcgat
     3541 ccgtcagctc aacatctggt gcgccggctg ctccaccggc caggaagcct attcgctcgc
     3601 gatgatgttc gccgatgcgc cggcgaaatg gggggactgg cggatcgaca tcaccgccac
     3661 cgacgtgtcg gagactgcaa tcgagaaggc gcgcgccggc tattacagcc agttcgagat
     3721 ccagcggggg ctgccggtag gcacgatgct gcgctggttc gatcaggtcg gcggcgattg
     3781 gcgcgtgaaa agcgagcttg cccgttatct gcgctttcgc cgccacaaca tgctcaccgc
     3841 gcagaccggc cgcttcgatc tcatcctctg ccgcaacgtg atgctctatt tctcgccgga
     3901 gcggcggcgc gaggctttcg atcgcctcgc cggctcgctg gagcccgacg gctatctgat
     3961 gctgggcgcc ggcgagaccg tgattgggca aactgacgcc ttcatttccg cacccgagct
     4021 gcgcggcctt taccgccgct ccgctgcggc ggtggcgaaa gtcgcctgac ggagatcgtt
     4081 tcgacgcgag cgttcttgga tttatagcgg cagcgtgcca caggcttgag catgctgacg
     4141 attccgcccg ctgcgaatgg ctgacgacag cgcgatcaag cggctcatcc gttccgcgtt
     4201 cggatcgatc tggtcgattg agctcctgtt ggtgctcaag cagcggccgg atcacttctg
     4261 gacccgcgct gagctgatcg cgaccttgcg agcgagcgag gaggtcctgg cgcgcagcag
     4321 tgccgatttg cgtacggctg gcctgatctt ggtcgacgag gaacagcgcg ttcgcttcgg
     4381 accggcctcg ccagagctgg aagaagcggt tgaggcggtc gccagcctgt acgcccgacg
     4441 cccggccgca gtgcggcggc tgatcgtcgg cggcgatgac gcgatcgtca acttcgccga
     4501 cgcgtttcgg tttcggaggg gggattgatg tttggggttg tcgatacctg gtttccggcc
     4561 gcggtatact tgctgtgctt ccttacgagc gccgcttgcg cttggctgct gatgcgcagc
     4621 tatctgcgcg cgcgtgccca gatgctgttc tggagtgcgc tgtgctttgc gctgctcgcg
     4681 ctcaacagca tgctggtggt ccttgatctg ctgatcgccc gcgacatcga tctcggcctc
     4741 tatcggctta tggcctcgct cgcggcggtt tcggtcctga tcttcggctt tgtgtggcga
     4801 ggtgacgaag catgacaggc gacctgagcg ttttcctgag cggcgcgatc actttcggct
     4861 ttttcgttgc gggcctgttc ttcctccgct tctggcggcg cacgggggac gggctgtttc
     4921 tcgcctttgc agccgcgttc gcgctgctcg gaatcaacca ggcgctgctg atcttttcgg
     4981 ggattccagt cgaggagcgc agcccgcttt acctcctgcg gctgctcgcc ttcctgctga
     5041 tcatcggcgc gatcgtccgc aagaacgcgc gcgattagcc ccccgagcag cggccgatcg
     5101 cggcgcgaag ctgctcgatc gtgaacggct tcaccagcac ttccacgtct tccggccggt
     5161 taccgatctc gttcgggtcg gcatagccgg tgatcagcag cgcgg
//
LOCUS       DASQVK010000229         4211 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_428882,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000229 DASQVK010000000
VERSION     DASQVK010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4211)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4211)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4211
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_428882"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(249..1529)
                     /locus_tag="VE567_04970"
     CDS             complement(249..1529)
                     /locus_tag="VE567_04970"
                     /inference="COORDINATES: protein motif:HMM:NF024627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HYZ48228.1"
                     /translation="MLAAGNYGSIGINGRNYASGVTLQSAVSGQAHIDGLTIQNSSNL
                     SFSGLDLGRAAGTTPPDSVQLNWVKTSSNINFNEVTFHGSLDNDPSNDGVGLYAIGVS
                     GLKVANCTFTQLFRGLAITGSSNVSVQSNDFHDLRSDGTVVSSTDGISIDGNSYSNFH
                     PNATDHADAIQFWNTGQTKGSSNITIKDNVLMQPDPVPPGGVQGIFISDPLTYGYKNI
                     LIQNNVLYSNGAYNGITVFGADGVQIIGNTVTSVSNDSKNYWIRLDTDSNITVRDNVT
                     DNILIGTLTNSSIENNVNFLSTPALRAQISHLDNPASAADLVLPGTGYHVPVTTPLAP
                     VAGAVGSGISGFLETSLGSSISKLLVADSSSQTLNMSGLKDALVSAAPVAEASAPAPA
                     APPVIALEAPMEVHHWAGYHVADSRFVESFTALP"
     gene            1830..2828
                     /gene="trpD"
                     /locus_tag="VE567_04975"
     CDS             1830..2828
                     /gene="trpD"
                     /locus_tag="VE567_04975"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HYZ48229.1"
                     /translation="MSSFTLLPDASEPLDLATAEAAFGDILDWRCDPEDVVRFLTDMT
                     VRDETSIEIAACARAMRARMIEVHAPPHAIDVCGTGADGQHSLNISTAVAIVVAACGV
                     PVAKHGNRAASSKAGAADTLEALGLDLDVASATAERSLADIGIAFLFAQKHHPTLAPL
                     APIRRRIGRRTVFNLVGPICNPARVRRQLIGVARPDFMPVYAEALELLGAEAAMLVAG
                     DEPLDELSIAGPSTIVKVGQCGAGTLRITPADAGLPAHPLDALLGDDAAYNAAALRRL
                     LQGEEGAYRDAVLLNSAAALMVAGRVNTLAEGVEEAGEAIDNGLANALLDCWIAYR"
     gene            2825..3604
                     /gene="trpC"
                     /locus_tag="VE567_04980"
     CDS             2825..3604
                     /gene="trpC"
                     /locus_tag="VE567_04980"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004425 - indole-3-glycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006568 - tryptophan metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HYZ48230.1"
                     /translation="MNKLQEICAHKREEVTARKARTSLSDLQRRAAEQSPPRGFRRAL
                     DTAPGYGLIAEVKKASPSKGLIRADFDPPAHARAYEAGGAACLSVLTDERYFQGHDDY
                     LVAARAACSLPVLRKDFMVDPWQVAEARALGADAILIIVAALSDAQMAEIESAAIEHG
                     MDALIEVHDADELDRALGLHSRLIGVNNRDLKDFTVDFARTYELVGRAPAGCTFVAES
                     GLTTKADLDAMAAHGVRCFLVGEALMRQADVEAATRALLSR"
     gene            3601..4074
                     /gene="moaC"
                     /locus_tag="VE567_04985"
     CDS             3601..4074
                     /gene="moaC"
                     /locus_tag="VE567_04985"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HYZ48231.1"
                     /translation="MTKLTHLDEAGAAHMVDVSGKAVTLREAVAVGRIRMSAGALEAI
                     RAGALAKGDALAVARVAGIMAAKRTSELIPLCHPLPLTRVSVEFAFEAGAVAATATAA
                     TEGKTGVEMEALTAASVALLTLYDMAKAIDKAMTIENVRLLSKTGGKSGGWRADP"
     gene            complement(4082..>4211)
                     /locus_tag="VE567_04990"
     CDS             complement(4082..>4211)
                     /locus_tag="VE567_04990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018251134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HYZ48232.1"
                     /translation="MLEDLVAAAFNDARAKADAASSQEMSKMTSGLPLPPGFKLPF"
BASE COUNT          769 a         1368 c         1335 g          739 t
ORIGIN      
        1 acaaatgccg cacctgcgat cagaattggc ttgatcaatc ccatcactgt cgcctccaga
       61 catgggccgc ctctcctgca ccgcaatcgg gcacttttgg caggcgcacc agtctctaga
      121 gccgatgctc cgtatcggca aacccgatcc gaaactcgcc ggcggcaaaa tggatcgggt
      181 ggacgcgttt catcgagagg ccgatatctc ttacgccgaa atggccggaa gcgcgtccac
      241 cggggctatc agggcagcgc cgtgaaactt tcgacaaatc gggaatcggc gacatgatag
      301 ccggcccaat gatggacctc catcggcgcc tccagtgcga tgacgggagg cgctgccgga
      361 gccggtgccg aagcctcggc tacgggcgcc gccgagacca gcgcgtcttt aaggccggac
      421 atgttcagcg tctgcgacga ggagtcggcg accaacagct tggagatcga cgatcccagg
      481 ctcgtctcga gaaagccgct gatcccgctg cccactgccc cggcgaccgg cgcgagcggc
      541 gtcgtcaccg gcacgtgata accggtgcca ggaagcacca ggtccgcggc gctggcgggg
      601 ttgtccaaat gggaaatctg agcgcgcaac gctggtgtgc tcaggaaatt cacgttgttt
      661 tcaatcgaag agtttgtgag cgttccaatc aggatattgt ccgttacatt gtctcgcacc
      721 gtaatattac tgtcggtatc aagccggatc cagtaattct tggaatcgtt gctgaccgac
      781 gtgacggtat ttccgatgat ctgtacgcca tctgcgccga acacggtgat gccgttatag
      841 gcgccgttgg aatacagcac attgttctgg atcaggatgt ttttatagcc gtaggtgaga
      901 gggtcggaga taaagatccc ctgcacgccg cccgggggca ccgggtcggg ctgcatcagc
      961 acattgtcct tgatcgtgat gttgctggac cctttggtct ggccggtgtt ccagaactgg
     1021 atcgcatcgg catgatcggt cgcgttcgga tggaaattgg aataggaatt tccgtcgatc
     1081 gagatcccgt cggtcgagga gacaaccgtg ccgtcggacc ggagatcatg gaaatcgttg
     1141 gattggacgc tgacgttcga agaccccgtg atggcgagac cccgaaaaag ctgcgtgaac
     1201 gtacaattgg cgaccttcaa gccgctgacg ccgatcgcgt acaagccgac gccgtcgtta
     1261 ctcgggtcat tgtcgagcga cccgtgaaac gtgacttcgt tgaagttgat gttgctcgag
     1321 gtcttgaccc agttgagctg caccgaatcg ggcggagtcg tcccggccgc acggcctaga
     1381 tcgagaccgg aaaagctcag attgctcgaa ttctggatcg tgagcccatc gatatgggcc
     1441 tgacccgaga cggcgctctg cagcgtgacg cccgaagcgt aatttcgccc attgataccg
     1501 atcgaaccgt aattgcccgc ggcaagcacg atcttgtcgc cgcctgcggc cgacgcgagg
     1561 gccgcctgca attgggtcgc gtccgaaaca ttgaaggtcg tcatgataat ccccgctggt
     1621 gagggacgcc gcgagcagcg cgacacgtcc tctgatcggg agcgggaata gaaccgaggg
     1681 tttatgcgac cggttagaga gcttggttaa tgagaaataa atcgtgtttc caataacttg
     1741 agtccggaaa ccggctgccc tggccaagcc cggtcgttag ggtttgcgcc ttgggcgcaa
     1801 acatggtttg gggtctcccc aacaccgcca tgtcaagctt cactctcctt cccgacgcca
     1861 gcgagccgct cgatttggcg actgccgagg ccgccttcgg cgacattctc gattggcggt
     1921 gcgatcccga ggacgttgtc cgcttcctga cggacatgac cgttcgcgac gaaaccagca
     1981 ttgagatcgc cgcctgcgcg cgggcgatgc gggcgcggat gatcgaggtc catgctccac
     2041 cgcacgcaat cgacgtttgc ggcactggcg ccgacggcca gcacagcctc aatatttcga
     2101 ccgccgttgc gatcgtggtg gcggcctgcg gcgtgccggt cgccaagcac ggcaatcgtg
     2161 ccgcctccag caaggccggc gccgccgaca cgctggaagc gctcggcctc gatctcgacg
     2221 tcgcgtccgc cacagccgaa cgaagccttg ccgatatcgg catcgcgttc ctcttcgcgc
     2281 agaagcacca tccgacgctt gccccgctcg ccccgatccg ccgcaggatc gggcggcgga
     2341 cggtgttcaa cctggttggc ccgatctgca acccggcccg cgtgcggcgg caactgatcg
     2401 gggtcgcccg gcccgatttc atgcccgtct atgcggaagc gcttgagctg ctcggcgccg
     2461 aggcggcaat gctcgtcgcc ggcgacgagc cgctcgacga actgtcgatc gcgggaccga
     2521 gcacgatcgt gaaggtcggc cagtgcggtg ccggcacgct ccggatcact cctgccgatg
     2581 cgggactccc cgcccatccg ctcgatgccc ttctcggcga cgacgccgct tacaatgccg
     2641 ccgcgctccg caggctcctg caaggggaag aaggcgccta tcgcgacgcc gtcctcctca
     2701 acagcgccgc cgcgctgatg gtcgcaggcc gggtgaacac tctggcggaa ggcgtggagg
     2761 aagcgggcga ggcgatcgac aacggccttg ccaacgcgct gctcgattgc tggatcgcct
     2821 accggtgaac aagctccagg aaatctgcgc ccacaagcgc gaggaagtca cggcgcgcaa
     2881 ggcgcggacc agcctgtcgg accttcaacg cagggctgcg gaacagtcgc cgccgcgcgg
     2941 cttccggcga gcgctcgaca cggcgccggg ctatggcctc atcgcggagg tcaagaaggc
     3001 cagcccctcc aaaggtttga tccgagccga tttcgatcct ccggcgcacg cccgcgccta
     3061 tgaagccggc ggcgctgcct gcctctcggt gctgaccgac gagcgctact tccagggtca
     3121 tgacgattat ctggtcgccg cccgcgccgc ctgctcgctg ccggtgctcc gcaaggattt
     3181 catggtcgac ccttggcaag ttgccgaagc ccgcgcgctc ggcgcggacg cgatcctgat
     3241 catcgtcgca gcactgtcgg atgcgcagat ggcggaaatc gagtccgcag cgatcgaaca
     3301 tggcatggat gccctgatcg aggtccatga cgcggacgag cttgatcgcg cgctcggcct
     3361 ccactcgcgc ctgatcggcg tcaacaatcg cgacctcaag gacttcacgg tcgatttcgc
     3421 ccgcacttac gagctggtcg gccgcgcacc cgccggctgc acgttcgtcg ccgaaagcgg
     3481 gctcaccacc aaggccgatc tcgacgccat ggcggcgcat ggcgtgcgct gcttcctggt
     3541 cggcgaggcg ctgatgcggc aggcggacgt ggaggcagcg acgcgggcgc tgctcagccg
     3601 atgaccaagc tcacgcatct cgacgaagcc ggcgccgcgc atatggtcga tgtctccggc
     3661 aaggccgtga ccctgcgcga ggcggtcgca gtcggccgca tccgcatgag cgccggggcg
     3721 ctggaggcga tccgggccgg cgcgctcgcc aaaggcgacg ctctcgcggt cgcgcgcgtg
     3781 gcgggcatca tggccgccaa gcgcacgagc gaactgatcc cgctctgcca tccgctcccg
     3841 ctcacccgcg tctcggtcga gttcgcattc gaggccggtg cggtcgccgc caccgctacc
     3901 gccgcgaccg aaggcaagac cggcgtcgag atggaagcgc tcaccgccgc ctcggtcgcg
     3961 ctcctcaccc tttacgacat ggcaaaggcg atcgacaaag cgatgacgat cgaaaacgtg
     4021 cggctgctca gcaagaccgg cggcaaatcg ggcggctggc gcgccgaccc ctaacgaatc
     4081 gtcagaacgg cagcttgaac cccggcggga gcggcaggcc gctcgtcatc ttgctcatct
     4141 cctgcgacga tgccgcgtcc gccttggccc gcgcatcgtt gaacgcggcg gcgaccagat
     4201 cttccagcat c
//
LOCUS       DASQVK010000230         2142 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_268132,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000230 DASQVK010000000
VERSION     DASQVK010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2142
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268132"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2130
                     /locus_tag="VE567_04995"
     CDS             <1..2130
                     /locus_tag="VE567_04995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HYZ48233.1"
                     /translation="GRAERPVETHPQYHLKLLLDRIGVARGEVERWRWGGGHAARAGR
                     SRLISNALAPAPFTTQWTTLPRKDRDRSGVELLEVATPAEEAQVIGLALREALETPGR
                     TAALVTPDRGLAQRVSTHLKRWGIEADDSAGLPLSVTPPGTLLLAIIEAAAERFAPAS
                     LLALLKHPLVQAGEDRAAWLEDVRKLDLKLRGPRPAPGLAHLPDAPCTERVRAWLAPL
                     EQAFAAGRGLPALLAAVRDTAQALAGDEAWARPAGRAAADLFARFEDFAGQGPTKVDP
                     EALAPLLTELMNGVAVRPPQGGHPRIFIWGLIEARLQQADLTILGGLNEGVWPALPSP
                     DPWLAPRIRAELGLSGLETRIGLAAHNFAAALGAPQVLITRARRDARGPAVASRFWLR
                     LEALTGGLPRAERLARWARQLDAAEEVRAAPRPAPSPPVEQRPKRLSVTDLDRLKADP
                     FAFYAKAMLQLYPLEMVDADPTAAWRGTAVHLVLQKWAQEDKCDPDRLRPRAEAMLAA
                     ADAHPLMRALWEPRLIEAIDWIAAEMAERQAAGHKVLAAECKGELAIFGVTLKGIADR
                     IDRRPDGSLAIIDYKTGSAPSPKQVAGGYAQQLGLIGLMAEHGAFERVSGKASAFEYW
                     SLARNTQDGFGKIVTPVDPAGKGGRIFTDQFVARAASNLQGAVERWLTGAAPFTAKLH
                     PEHAPYGDYDHLMRWEEWRGRESEATG"
BASE COUNT          324 a          760 c          732 g          326 t
ORIGIN      
        1 gggcgcgccg agcgaccggt cgagacgcac ccgcaatatc atctgaagct cctgctcgac
       61 cggatcggcg ttgcgcgcgg ggaagttgag cgctggcgct ggggcggcgg ccatgcggcg
      121 cgggcagggc gcagccgcct catttccaac gcactcgcac cggcgccttt caccacccaa
      181 tggacgactt tgccgcgcaa ggaccgcgac cgctccggcg tcgagctgct cgaagtggcg
      241 acccccgccg aggaggccca ggtcatcggg ctcgcactac gggaagcgct ggagacgccc
      301 gggcgtaccg ccgctttggt cacgcccgat cgcggactcg cgcagcgcgt ctcgacccat
      361 ctgaagcgct gggggatcga ggccgacgat tccgctggcc ttccgctctc cgtcacgccg
      421 cccggtacgt tgcttcttgc gatcatcgag gcagccgccg aacgcttcgc gcctgcttcc
      481 ttgctggccc tgctcaagca tccactggtc caggcaggcg aggacagggc agcctggctc
      541 gaagacgtgc gcaagctgga cttgaagctg cgcggcccgc gcccggcgcc gggcctcgcc
      601 catctgcccg atgcgccctg caccgagcgc gtgcgagcct ggcttgcgcc gcttgaacag
      661 gctttcgcgg ctggacgggg cctaccagcc ttgctcgccg ctgtccgcga cacggcgcag
      721 gcgcttgccg gcgatgaagc gtgggcgagg cccgccgggc gggcggcggc cgaccttttc
      781 gcgcgcttcg aagattttgc cggccagggc ccaaccaagg tcgatccgga agcgctcgcg
      841 ccgcttctga cggagctgat gaacggcgtc gctgtccgtc cgccccaggg cggtcacccg
      901 cgaattttca tctggggctt gatcgaggca cggctgcaac aggccgacct caccatcctt
      961 ggcgggctta atgaaggcgt ctggccggcg ctgccgtcgc ccgatccctg gctcgcgccg
     1021 cgcatccggg cggagctcgg cctatctggg ctggagacgc gcatcgggct cgccgcccat
     1081 aatttcgccg ccgccctcgg cgcgccgcaa gtgctgatca cgcgcgcgcg gcgcgacgcc
     1141 cgcggacccg cagtcgcgtc gcgcttttgg ctgcgactgg aggcgctgac cggtggtttg
     1201 cctcgcgcgg agcggctcgc gcgctgggcc cgtcagctcg acgccgccga agaggttcgc
     1261 gccgcgccgc gcccggcgcc atccccgccg gtcgagcagc gccctaagcg cctgtcggtc
     1321 acggaccttg accggctgaa ggcggacccc tttgctttct acgccaaggc gatgctgcag
     1381 ctctatccgc tggagatggt cgacgctgac cccaccgcgg cctggcgcgg tacggcggtc
     1441 catctcgtgc tgcagaaatg ggcccaggaa gacaagtgcg atcccgaccg cctccgcccg
     1501 cgcgccgaag cgatgctggc cgcggccgac gcccacccgc tgatgcgggc gctttgggaa
     1561 ccgcgcctca tcgaagccat cgactggatc gcggccgaaa tggctgagcg ccaggcggcg
     1621 gggcacaagg tactggccgc cgagtgcaaa ggcgagttgg cgattttcgg cgtcacgttg
     1681 aaaggcattg ccgaccgcat cgaccgacgc cctgacggca gtctggcgat catcgactac
     1741 aagaccggca gcgccccaag cccaaagcag gttgccggcg gctatgccca gcaattggga
     1801 ctgatcggac tgatggccga acatggcgcc ttcgagcgcg tgtcgggcaa ggcgagcgca
     1861 ttcgaatatt ggtccctcgc ccgcaatacg caggacggct ttggcaagat cgtcacgccg
     1921 gtcgatccgg cagggaaggg cgggcgcatc ttcaccgacc aattcgtcgc acgcgcggcc
     1981 agcaatctgc agggcgcggt ggagcgttgg ctgaccggcg ccgcgccgtt caccgccaaa
     2041 cttcacccgg agcacgcgcc ctatggcgac tatgaccatc tgatgcgctg ggaagaatgg
     2101 cgcggccgcg agagcgaggc gaccggctga atgcgtcccc ta
//
LOCUS       DASQVK010000231         2468 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_458106,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000231 DASQVK010000000
VERSION     DASQVK010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2468
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_458106"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..796)
                     /gene="rnd"
                     /locus_tag="VE567_05000"
     CDS             complement(<1..796)
                     /gene="rnd"
                     /locus_tag="VE567_05000"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010337305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016891 - RNA endonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HYZ48234.1"
                     /translation="MHIHPLITDSDTLAELCARLAKSRFVAVDTEFMRENSYWPDLCL
                     IQIADENEAAAVDPKAEGLDMKPLLDLLVDNEEVLKVFHAGGQDVEIIYNLTGKTPHP
                     IFDTQIASMAIGQGEQIGYSNLVDNWLGIQLDKGARFTDWARRPLDKRQIDYAIGDVT
                     HLVRIFPMIINRLVKLGRGHWLDEEMERLADPSNYINDPELAWQRVKVPSRKPDALGR
                     LKALAAWREREARGKNLPRGRIVKDETLADIAAHPPRTQEDLAKVRG"
     gene            886..>2468
                     /gene="aspS"
                     /locus_tag="VE567_05005"
     CDS             886..>2468
                     /gene="aspS"
                     /locus_tag="VE567_05005"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HYZ48235.1"
                     /translation="MHAYRTHTCGALRASHVGETVRLSGWVHRKRDHGGVLFIDLRDH
                     YGLTQVVADADSPALPVLESLRVESVVTIDGVVKARSESTVNPQLATGQIEVYAKAAT
                     VQSAAQELPMPVAGEADYPEDIRLRYRFLDLRRERLHSNIVLRSHVIASIRRRMIDQG
                     FTEFQTPILTASSPEGARDYLVPSRVHPGKFYALPQAPQMFKQLIMVAGFDRYFQIAP
                     CFRDEDARADRSPGEFYQLDLEMSFVTQDDVFAAIEPVLHGVFEEFAGQRQVSAAPFP
                     RIPYREAMLKYGSDKPDLRNPIVITDVSEHFKGSGFGLFARLVEGGSVVRAIPAPNTA
                     GHSRKFFDDMNDWARSEGHAGLGYITQKAGELGGPIAKNHGEEATRKLIAELGLGPDD
                     GIFFAAGKEAQAAKLAGAARTRIGEQLGLIDQNRFEFCWIVDFPMYEYDEDAKKVDFS
                     HNPFSMPQGELEALETKDPLGILAYQYDIVCNGVDLSSGAIRNHRPEIMYKAFEIAGY
                     TQAEVDTNFSGMIEAFKLGA"
BASE COUNT          425 a          839 c          761 g          443 t
ORIGIN      
        1 ggccgcgcac ttttgccaga tcctcctgcg tgcgcggcgg atgggcggcg atatcggcca
       61 gcgtctcgtc cttgacgatg cggccgcgcg gcagattctt gccccgcgcc tcccgctcgc
      121 gccacgccgc cagcgctttc agccgcccca gcgcatcggg cttgcggctc ggcaccttga
      181 cgcgctgcca ggccagctcg gggtcgttga tgtagttgga cgggtccgcc agccgctcca
      241 tttcctcgtc cagccaatgg ccgcggccca gcttcaccag ccgattgatg atcatcggga
      301 agatgcgcac cagatgggtc acgtcgccga tcgcatagtc gatctggcgc ttgtcgagcg
      361 gccgccgcgc ccaatcggtg aagcgcgcgc ccttgtcgag ctggatgccc agccagttgt
      421 cgaccagatt gctatagccg atctgttcgc cctggccgat cgccatcgaa gcgatctggg
      481 tgtcgaagat cggatgcggc gtcttgccgg tcaggttgta gatgatctcc acatcctgcc
      541 cgccggcatg gaagaccttc agcacctctt cgttatcgac cagcagatcg agcaagggct
      601 tcatgtcgag cccttccgcc ttgggatcga ccgccgcggc ctcgttctcg tccgcgatct
      661 ggatcaggca caggtccggc caatagctgt tctcgcgcat gaactcggta tccaccgcta
      721 cgaaacggga tttcgccagg cgtgcgcaga gttcggcaag cgtgtcgctg tcggtgatca
      781 gcggatggat gtgcatcgga gcgccatagc cgccctgcgc gccttgacaa tcccgccgca
      841 gccggggaag cgcgcccgca acctttctca tccgttggaa cgaccatgca cgcctaccgc
      901 actcacacct gcggcgcgct tcgcgcctct catgtcggcg agactgttcg cctgtcggga
      961 tgggtgcatc gcaagcgcga tcatggcggc gtgctcttta tcgacctgcg cgaccattat
     1021 ggtctgaccc aggtcgtcgc cgacgcggat tcgcccgcac tgccggtgct ggaaagcctg
     1081 cgggtcgaat cggtcgtgac gatcgacggc gtggtgaagg cccgctccga aagcaccgtg
     1141 aacccgcagc tcgcgactgg ccagatcgaa gtctatgcca aggccgcgac cgtccagtcc
     1201 gccgcgcagg aactgccgat gccggtcgcg ggcgaggcgg attatccgga agacattcgc
     1261 ctgcgctacc gcttcctcga tctgcggcgc gaacggctcc attcgaacat cgtgctgcgc
     1321 agtcatgtca tcgcctcgat ccggcggcgg atgatcgacc agggcttcac cgagttccag
     1381 acaccgatcc tgacagcctc cagccccgaa ggcgcgcgcg actatctcgt ccccagccgc
     1441 gtccaccccg gcaaattcta cgcgctccct caggcgccgc agatgttcaa gcagctgatc
     1501 atggtcgccg gcttcgatcg atatttccag atcgcgccct gcttccgcga cgaggatgcg
     1561 cgcgccgatc gcagccccgg cgaattctac cagctcgatc tcgaaatgag ctttgtgacg
     1621 caggacgatg tgttcgccgc gatcgagccg gtgctgcacg gcgtcttcga ggaattcgcg
     1681 gggcagcgcc aggtcagcgc cgccccgttc ccgcgcatcc cgtaccggga ggcgatgctg
     1741 aaatacggct ccgacaagcc ggacctccgc aacccgatcg tcatcaccga cgtgtcggag
     1801 catttcaaag gctccggctt cggcctgttc gcgcggctgg tcgagggcgg ctcggtcgtc
     1861 cgcgcgatcc ctgcgccgaa caccgccggg cacagccgca aattcttcga cgacatgaac
     1921 gattgggcgc ggagcgaagg ccatgccggc cttggctata tcacccagaa agccggcgag
     1981 ctgggcggcc cgatcgccaa gaatcacggc gaggaagcga ctcgcaagct gatcgccgag
     2041 cttggcctcg gccccgacga cggcattttc ttcgccgccg gcaaggaagc ccaggccgcc
     2101 aagctcgccg gcgctgcccg cacgcgcatc ggcgaacagc tcgggctgat cgaccagaac
     2161 aggttcgagt tctgctggat cgtcgatttc ccgatgtacg aatatgacga ggacgcgaag
     2221 aaggtcgatt tctcgcacaa tcccttctcg atgccgcagg gcgagctgga agcgctggag
     2281 accaaggacc cgctcggcat cctcgcctac caatatgaca tcgtctgcaa cggcgtggat
     2341 ctgtcctcgg gcgcgatccg gaaccaccgg ccggagatta tgtacaaggc gttcgagatc
     2401 gccggctaca cgcaggccga ggtggacacg aacttctcgg gcatgatcga ggcgttcaag
     2461 ctcggcgc
//
LOCUS       DASQVK010000232         2572 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_78646, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000232 DASQVK010000000
VERSION     DASQVK010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2572
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78646"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..527
                     /locus_tag="VE567_05010"
     CDS             <1..527
                     /locus_tag="VE567_05010"
                     /EC_number="4.1.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007680462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008674 -
                     2-dehydro-3-deoxy-6-phosphogalactonate aldolase activity
                     [Evidence IEA];
                     GO_process: GO:0034194 - D-galactonate catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="2-dehydro-3-deoxy-6-phosphogalactonate aldolase"
                     /protein_id="HYZ48236.1"
                     /translation="IIEAGIRIVEVPLNSPDPLASIERLAKRFGDQALIGAGTVLDPE
                     DVKRVARAGGRIIVAPSTDPTVIKQAWDEGLVSAPGFFTPSEAFTALKAGADALKLFP
                     AEAASPAVVKALKAVLPKETPLIIVGGVKPETMRDWTQAGANGFGLGSGIYVPGQSAA
                     DTAAKARRFVEALA"
     gene            524..1465
                     /locus_tag="VE567_05015"
     CDS             524..1465
                     /locus_tag="VE567_05015"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HYZ48237.1"
                     /translation="MIRFAIIGYGKIARDQHYPSLAAHGGYALKAVMTTGGGEPPGTQ
                     LFASVDELLSAMSGELDAVAICTPPGPRYAIARQCLAAGLDLLLEKPPATTLGEIEAL
                     RDEAAARGRVIFTTWHAQHAAAVDQARALLAGKRIAAMRIHWHEDVNKWHPGQDWVWE
                     PSGFGVFDPGINALSIATRIVPGKLILDEAALSIPANRQQPIVARLKLSSPVADGPIE
                     AVFDWNPTSDDDWTIAVELADGPRVELRHGGAELFVDGAPHAASGPGEYPAIYAEFAQ
                     LVAERRSHVDIEPLRLVADAFMKARRQEAPAFHWSAA"
     gene            1515..>2572
                     /locus_tag="VE567_05020"
     CDS             1515..>2572
                     /locus_tag="VE567_05020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HYZ48238.1"
                     /translation="MGWSFAIDRGGTFTDIVARTPDGGLITRKLLSEDPERYDDAATA
                     GIALLMAEHGAAPIDSVKMGTTVATNALLERKGEPLVLAITRGFGDALGIGYQARPDI
                     FAREVQLPKPLYSQVIEVEERVTVAGSVLVPLDEAKARADIAAARARGFKAIAIVLMH
                     GWKHVAHEARLAEIAAELGFEQISVSHRVGPLIKLVGRGDTTVVDAYLSPVLRRYVDK
                     VGANLGAGAPLLFMQSSGGLVEASSFSGKDAILSGPAGGIVGMAKTAAEAGFDKVIGF
                     DMGGTSTDVSHYAGAYERSTERVVAGARVRAPMLEIHTVAAGGGSICRFDSMRLRVGP
                     ESAGAIPGPACYGRGGPLT"
BASE COUNT          411 a          846 c          922 g          393 t
ORIGIN      
        1 cgatcatcga ggccggcatc cgcatcgtcg aagtgccgct caactcgccc gatccgctcg
       61 ccagcatcga gcggctggcg aaaaggttcg gcgaccaagc gctgatcggc gcgggcaccg
      121 tgctcgatcc cgaggacgtg aagcgggtcg cgcgggccgg cgggcggatc atcgtcgcgc
      181 cctccaccga ccccacggta atcaaacagg cctgggacga ggggctggtc tccgcgcccg
      241 gcttctttac gccgagcgaa gcgttcaccg cactcaaggc cggggccgac gcgctgaagc
      301 tcttcccggc ggaggcggcc tcccccgccg tcgtaaaagc gctgaaagcg gtgctgccca
      361 aggaaacccc gctgatcatc gtcggcggcg tcaagcccga gacgatgcgc gattggaccc
      421 aagccggcgc gaacggcttc gggctcggct ccggcatcta cgtgcccggc cagagcgctg
      481 cggacaccgc cgccaaggcc cggcgctttg tcgaggcgct ggcatgatcc gctttgcgat
      541 catcggctat ggcaagatcg cgcgcgatca gcattatccc tcgctcgcgg cgcatggcgg
      601 ctatgcgctg aaagcggtca tgaccacggg aggcggcgag ccgcccggca cgcaactgtt
      661 tgccagcgtg gacgagctgc tgtcggccat gtcgggcgaa ctggacgccg ttgcgatctg
      721 cacgccgccg gggccgcgct atgcgatcgc acgccagtgc ctggcagcgg ggctcgacct
      781 gctgctcgaa aaaccccccg ccacgacgct gggtgaaatc gaagcgttgc gggacgaggc
      841 ggcggcgcgc ggacgcgtga tcttcaccac ctggcatgcg caacatgccg cggcggtgga
      901 ccaggcgcgc gccctgctgg cgggcaagcg gatcgctgcg atgcgcatcc actggcacga
      961 ggatgtcaac aaatggcatc ccggccagga ctgggtgtgg gagccgtccg gcttcggcgt
     1021 attcgatccc gggatcaatg cgctgtcgat tgcgacccgc atcgtgccgg gcaagctgat
     1081 cctcgacgag gcggcgctga gcatccccgc caatcgccag cagccaatcg tcgcgcggct
     1141 gaagctgtcg agccccgtgg ccgacgggcc gatcgaagcg gtgttcgact ggaacccgac
     1201 cagcgacgat gattggacca tcgccgtcga gctggccgac ggcccccggg ttgagcttcg
     1261 gcacggaggt gcggagctgt tcgtcgacgg cgccccccac gccgcctcgg gcccgggcga
     1321 atatccggcc atctatgccg agttcgcgca gttggtcgcc gaacggcgca gtcatgtcga
     1381 tatcgagccg ctgcggctgg tggccgacgc cttcatgaag gcgcggcggc aggaagcgcc
     1441 ggcgtttcac tggagcgccg cctaggctcc gttcgggggt ggacgaggca cgcggcatcg
     1501 cccaaagccc ggcaatgggc tggagtttcg cgatcgaccg gggcggcacg ttcactgaca
     1561 ttgtcgcccg aacgcccgat ggcgggctga tcacccggaa gctgctttcg gaagacccgg
     1621 agcgctacga cgacgcggcg acggccggca tcgcgctgct gatggcagag catggggcag
     1681 cgcccatcga cagcgtaaag atgggcacga ccgttgccac caatgcgctg ctggagcgca
     1741 agggcgagcc gctggtgctg gcgatcacgc ggggtttcgg cgatgcgctc gggatcggct
     1801 atcaggcgcg cccggacatc tttgcgcgcg aggtccagct gccgaagccg ctctattccc
     1861 aagtgatcga ggtcgaggag cgcgtcacgg tcgcaggcag cgtgctggtc ccgctcgacg
     1921 aggccaaggc ccgagccgac atcgcggccg cgcgcgcacg cggtttcaag gccattgcga
     1981 tcgtgctgat gcacgggtgg aagcacgttg cccacgaagc gcggctggcg gagatcgcgg
     2041 cggagctggg cttcgagcag atttcggtca gccacagagt aggcccgctg atcaaattgg
     2101 tcgggcgcgg cgacacgacc gtggtggacg cttatctctc gccggtgctg cgccgctatg
     2161 tcgacaaggt gggcgcgaac ctcggggcgg gcgcgccgtt gctgttcatg cagtcgagcg
     2221 gcgggctggt cgaggcgtcg agcttcagcg gcaaggatgc gatcctgtca ggacccgcgg
     2281 gcggcatcgt cggcatggcg aagactgcgg ccgaagcggg tttcgacaag gtgatcggct
     2341 tcgatatggg cggcacctcg accgacgttt cgcactatgc cggcgcctat gagcgttcga
     2401 ccgagcgtgt cgtggcgggc gcgcgagtgc gggcgccgat gctcgaaatc cacaccgtcg
     2461 cggcgggcgg cggctcgatc tgccgcttcg acagcatgcg gcttcgcgtc ggaccggaat
     2521 ccgccggcgc cattccaggt ccggcctgct atggccgcgg tgggccgctg ac
//
LOCUS       DASQVK010000233         2265 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_394896,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000233 DASQVK010000000
VERSION     DASQVK010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2265
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_394896"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..220)
                     /locus_tag="VE567_05025"
     CDS             complement(<1..220)
                     /locus_tag="VE567_05025"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HYZ48239.1"
                     /translation="MTRNARANGFTLIEMLVSLGVLGLLSMLLLGGVFQTGSFLQRQA
                     GRTGAREDVVTAQQLLRDRLEQLRPVIVG"
     gene            complement(217..579)
                     /locus_tag="VE567_05030"
     CDS             complement(217..579)
                     /locus_tag="VE567_05030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HYZ48240.1"
                     /translation="MKNPREQGFALAETLVALAIVGTMLAMTFRLIGSNALQVRQVED
                     RAVATLVARSALDYAVAIGRVGDGPLSGTSAGYRWEASVGPYAGDGRRQSRLRRVSVT
                     VRGTGGKVAARLSTVMAP"
     gene            complement(576..980)
                     /locus_tag="VE567_05035"
     CDS             complement(576..980)
                     /locus_tag="VE567_05035"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HYZ48241.1"
                     /translation="MKRHRQEGFTLLEMLVILGILGLIAGIGFPALDKALKGAAFHAA
                     AARVELALRQRQAGAVRLGRPQALTAAELRAIADGPDPRARSATLRIEAPQGGLLFFP
                     DGTSRGGEVVLMDGRRQLRFAVDADRPLLSRL"
     gene            complement(977..>2265)
                     /locus_tag="VE567_05040"
     CDS             complement(977..>2265)
                     /locus_tag="VE567_05040"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HYZ48242.1"
                     /translation="RWADQSRRRDHHGRGSAAGSERGRIVAAFRFRAYRADGALEEGT
                     ITSPDMPRAMAAVRAKGYTLVSLSQRKDADAAPARKLDRKASAAAILLLGELSILLKA
                     GLPLDRAMALAIGNIEDKKLAARFAPLLSDVREGLPLSEAMARRPDLLDPAAVAMTEA
                     GEANGRLPEALTRVVEMLERAAELRRLISGAMIYPVALLAIAVGVVLLMLLFVVPQFE
                     GLMTSTQVQLPAASRAVLEASRLVRSRGLSLLGIVVAAAFGLRFLMAQDKARVALDRV
                     MLSVPQIGPIVRRIQTARFARILGALVEGRVALTGAVALAARTISNRAMTAALSKVVE
                     GVRQGQGLSGPLAAARIMPELAIGFIRTGEESSELGLMLTRLADVLDRDVKNRIERVV
                     AFATPLITIMLAAMVTGIVAAIMSAILGFNEVAVSG"
BASE COUNT          373 a          840 c          731 g          321 t
ORIGIN      
        1 ttcccacgat gaccggcctc aactgctcca gccggtcgcg caacagctgc tgggccgtca
       61 cgacgtcttc gcgcgcgcct gttcgccccg cttggcgctg caggaacgag ccggtctgaa
      121 aaacgccgcc gagcagcagc atcgacagga ggccgagcac gccaaggctc accagcatct
      181 cgatcagcgt gaagccgttg gctcgagcgt ttctcgtcat ggcgccatca ctgtgctgag
      241 ccgcgccgcg actttgccgc ctgtgccgcg aaccgtcacg ctgacccggc gaaggcgcga
      301 ttgccggcgg ccgtccccgg catagggccc gacactcgct tcccagcgat agcccgcgct
      361 cgtgccgctg agcgggccgt cgccgacccg gccgatcgcc actgcataat cgagcgccga
      421 acgcgccacc aatgtcgcca cggcgcggtc ttccacctgc cgcacctgaa gcgcattcga
      481 accgatcagg cgaaaggtca tcgccagcat ggtgccgacg atcgcgagcg cgacgagcgt
      541 ctctgccagc gcaaagccct gttcccgcgg gttcttcata gccggctcag caacggccgg
      601 tcggcgtcca cggcgaagcg cagctggcgg cggccgtcca tcagcacgac ctccccgccg
      661 cggctggtgc cgtcgggaaa aaagagcagg cccccttggg gcgcctcgat ccgcagagtt
      721 gcactccggg cgcgtgggtc cggcccgtcg gcgattgccc gcagctccgc agccgtcagt
      781 gcctggggcc ggccgaggcg caccgccccc gcctggcgtt ggcgcagggc gagttccacc
      841 cgtgccgccg ccgcgtggaa cgcagccccc ttcagcgcct tgtccagcgc tggaaagccg
      901 atgccggcga tcagccccag gataccgagg atcaccagca tttcgaggag cgtgaagccc
      961 tcctgcctgt gtcgcttcat cccgacactg ccacttcgtt gaagccgagg atggccgaca
     1021 tgatcgcggc gacgatcccg gtcaccatcg ccgccagcat gatcgtgatg aggggcgtcg
     1081 cgaacgccac cacccgctcg atgcggttct tgacgtcgcg gtcgagcaca tcggcaaggc
     1141 gcgtcagcat caggccgagc tcggagctct cctcgccggt gcggataaag ccgatcgcca
     1201 gctccggcat gatccgcgcg gctgcgagcg gaccggaaag gccctggccc tgtcgcacgc
     1261 cttcgacgac cttggacaag gctgccgtca tcgcccggtt gctgatcgtg cgcgcggcaa
     1321 gcgccaccgc acccgtgagc gcgacccggc cttcgacaag cgcgcccagg atccgggcga
     1381 atcgcgcggt ctggatgcgg cggacgatgg gcccgatctg gggcaccgaa agcatcaccc
     1441 ggtcgagcgc cacgcgcgcc ttgtcctgcg ccatcaggaa ccggaggccg aacgcggccg
     1501 cgaccacgat gccgagcagg gaaaggcccc ggctccgcac gagcctgctc gcctccagta
     1561 ccgcgcgaga ggccgcaggc agctgcacct gtgtcgacgt catcagtccc tcgaactgag
     1621 gcacgacgaa caacagcatc aacaggacca cgcccaccgc gatcgccagc agcgccaccg
     1681 ggtagatcat ggcgccagag atgagccgcc gcagctcggc cgcgcgctcc agcatctcga
     1741 ccacgcgcgt gagtgcctcg ggcaagcggc cattggcttc gcctgcttcc gtcatcgcga
     1801 ccgcggcggg gtcgagcaga tcaggccggc gcgccatcgc ttccgagagc ggcaggccct
     1861 cgcgcacgtc ggacagcaga ggcgcaaacc gcgcagccag cttcttgtcc tcgatattgc
     1921 cgatcgcaag cgccatcgcg cggtcgagcg gcagcccggc tttcagcagg atcgagagtt
     1981 cgccgagcag caggatcgcc gccgccgagg ctttgcgatc cagcttgcgc gcgggcgcgg
     2041 cgtcggcgtc cttgcgctgc gaaagcgaga ccagagtata gcctttggcg cgcacggccg
     2101 ccatcgcgcg gggcatgtcg ggcgacgtta tcgtcccctc ctccaacgcg ccatcggcgc
     2161 gataggcgcg aaaccggaac gcggccacta ttcgcccccg ctcgctaccc gcagcacttc
     2221 ctcgaccgtg gtgatcccgg cggcggcttt gatcagccca tcgcg
//
LOCUS       DASQVK010000234         3267 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_268591,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000234 DASQVK010000000
VERSION     DASQVK010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3267
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268591"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..360)
                     /locus_tag="VE567_05045"
     CDS             complement(<1..360)
                     /locus_tag="VE567_05045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase"
                     /protein_id="HYZ48243.1"
                     /translation="MAYSVKEIFYTLQGEGRNAGRAAVFCRFAGCNLWSGREQDRAGA
                     MCTFCDTDFVGTDGTDGGKFADAAGLAATVDAAWQGATGPKMVVLTGGEPLLQADADL
                     IEALHARGFEIAVETNGT"
     gene            complement(370..1248)
                     /locus_tag="VE567_05050"
     CDS             complement(370..1248)
                     /locus_tag="VE567_05050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48244.1"
                     /translation="MSTDFTTLDTRGARNRAPIVIGILAFLAGLVLAGWALSRWDTAR
                     NWLFGARTPAQAAASAPQPVRPLEVTPMAPDETTVAVDPSTAAALGQRVGEIEARIDR
                     VAERANAAGDNAARAEGLLIAFAARRAVDRGLGLGYIEAQLRERFGATQPQAVATIIA
                     AAREPITLEELQLGLDDLAPSLASSTSEEGWWPSLRNELSNLIVVRKVGQPSPAPADR
                     LRHAQRLLEGGQVEKALVEVARLPARGKAQNWMAAARRYIQTQRALDVIETAAILTPR
                     AAPSPPPLLPEPPPAM"
     gene            complement(1256..1909)
                     /locus_tag="VE567_05055"
     CDS             complement(1256..1909)
                     /locus_tag="VE567_05055"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006782 - protoporphyrinogen IX
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HYZ48245.1"
                     /translation="MTRPLLVLRPQPGADATAARARALGLEAIVAPLFRIAPRAWTLP
                     DGSFDALLVTSANAARMLDDRLDRATPVYAVGEATRAALEAAGFMQVIAGKAGAAEIV
                     RRAAADGVSTLLHLAGEDRTEFGPAAVRIETRIVYAAEPCAPGPSLDNALRQGAVALL
                     HSARAARRFRELAGAGHLIAAISAAVLEAAGEGWEAVAIAERPNDDALLAAAARLCQ"
     gene            complement(1906..2817)
                     /gene="hemC"
                     /locus_tag="VE567_05060"
     CDS             complement(1906..2817)
                     /gene="hemC"
                     /locus_tag="VE567_05060"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HYZ48246.1"
                     /translation="MRSTYRLGTRGSPLALTQAHMVKRALEAAHGWPETMIEIVTVKT
                     SGDRIQDRPLADIGGKALWTKELDLALADGRIDFAVHSMKDVETIRPDEIVIAAMLPR
                     ADVRDRLIGAESIGAIPAGGRVGTSSPRRSAQLLHLRPDLRIVMFRGNVDTRLSRLNL
                     GEADVTLLAAAGLDRLGRPEVGTPIAVETMLPAPAQGAVGIETRCEDAQMRELLAAID
                     DAPTSACVRAERALLARLGATCHSPVGALATVEDGDLRLRAQILTPDGRGVEAGEAVI
                     GDPAEAADLAAELLGRASPALRTHFAG"
     gene            2986..>3267
                     /locus_tag="VE567_05065"
     CDS             2986..>3267
                     /locus_tag="VE567_05065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HYZ48247.1"
                     /translation="MALILGIESSCDETAAALVSSDRAILAHRLAGQEAEHTPYGGVV
                     PEIAARAHVEALEPLIAAALADAGKALDEVDAIAATAGPGLIGGVMVGLV"
BASE COUNT          456 a         1201 c         1132 g          478 t
ORIGIN      
        1 cgtgccgttg gtctcgaccg cgatttcgaa cccgcgcgca tgcagcgcct cgatgaggtc
       61 cgcatcggcc tgcagcagcg gctcgccgcc ggtcagcacg accattttgg ggccggtggc
      121 gccttgccac gccgcgtcga ccgtcgccgc caagccggcc gcatcggcga atttcccgcc
      181 atccgtcccg tccgtgccca cgaaatcggt atcgcagaag gtacacatcg cccccgcccg
      241 gtcctgctca cggcccgacc agaggttgca cccggcaaag cggcagaaga cggcggcgcg
      301 gccggcgttc cgcccctcgc cctggagcgt gtagaagatt tccttgactg aataggccat
      361 cggcgccgcc tacatggcgg gcggcggctc gggcagcaag ggcggcgggc tgggcgccgc
      421 gcgcggggtc aggatcgctg ccgtctcgat cacgtccagc gcgcgctgcg tctggatgta
      481 gcgccgcgcc gccgccatcc aattctgcgc cttgccgcgg gcggggagcc gggcgacttc
      541 gaccagcgcc ttttcgacct gcccgccttc cagcagccgc tgggcgtggc gcaaccggtc
      601 ggccggcgcc ggcgaaggct ggcccacttt gcgcaccacg atcagattgg agagttcgtt
      661 ccggagcgag ggccaccagc cctcctcgct tgtgctgctg gcgagactcg gcgccagatc
      721 gtcgaggccg agctgcagct cttccagcgt gatcggctcg cgcgcggcgg cgatgatcgt
      781 ggccaccgct tggggctgag tcgcgccgaa gcgctcccgc agctgcgcct cgatatagcc
      841 aaggccgagc ccgcgatcga cggcgcggcg ggcggcgaag gcgatcagca gcccttcggc
      901 tcgcgcggcg ttgtcgcccg cggcgttggc gcgttcggcg acgcggtcga tgcgcgcctc
      961 gatttcgccg acgcgctggc cgagcgcggc cgcagtgctg ggatcgactg ccactgtcgt
     1021 ctcgtccggc gccatcggcg tgacttcgag cggacgcacc ggctggggcg cgctggctgc
     1081 ggcctgcgcg ggcgtccgcg caccgaacag ccaattccgc gccgtatccc agcgcgacag
     1141 cgcccagccg gccagcacca gcccggccag gaaagcgaga atgccaatga cgatcggcgc
     1201 gcgattccgc gcgccgcggg tgtcgagcgt ggtgaaatcc gtgctcatcg cgccttcatt
     1261 ggcacagccg cgccgccgcc gccagcagcg cgtcgtcgtt cggacgttct gcaatcgcga
     1321 cagcttccca accttcaccc gccgcttcga ggacggcagc gctgatcgcg gcgataaggt
     1381 gccccgcccc ggcaagctcc cgaaaccgcc gcgccgcccg cgccgagtgg agcaaggcga
     1441 ccgcgccctg ccgcagcgcg ttgtcgaggc tggggccggg agcgcaaggc tcggccgcat
     1501 agacgattcg ggtctcgatc cgcacggcgg ctgggccgaa ctctgtccgg tcctcgccag
     1561 cgagatgcag cagcgtgctg accccatccg ctgcggcccg gcgcacaatc tccgccgcgc
     1621 ctgccttgcc cgctatcact tgcataaagc cggcggcttc gagcgccgcg cgggtcgcct
     1681 cgcccactgc atagaccggc gtcgcccgat ccagtcgatc gtcgagcatg cgcgcggcat
     1741 tggcgctggt gacgagcagc gcatcaaagg acccgtccgg gagcgtccag gcccgcggcg
     1801 cgatgcggaa cagcggggcg acgatcgcct ccagcccgag cgcgcgggct cgcgccgcgg
     1861 tcgcgtcggc gccgggttga gggcggagga cgagcagcgg ccgcgtcatc cggcgaaatg
     1921 ggtgcggagc gccggcgagg cgcgcccgag caactccgcc gcgagatcgg ccgcctcggc
     1981 cgggtcgccg atcactgcct cgcccgcttc caccccgcgt ccatcgggcg tcagtatctg
     2041 cgcgcgcagc ctcagatcgc catcctccac cgtagcgagc gcgccgaccg gcgagtggca
     2101 cgttgcgccg agccgggcga gcagcgcccg ctcggcgcgc acgcaagcgc tggtcggcgc
     2161 gtcgtcgatc gcggcgagca gctcgcgcat ctgcgcatcc tcgcaccgcg tctcgatccc
     2221 gaccgcccct tgcgccgggg caggtagcat ggtttcgacc gcaatcgggg tgccgacctc
     2281 gggccgcccc agccggtcga gtcccgccgc cgcgagcaag gtcacgtccg cctcgcccag
     2341 gttcagccgc gacagccgcg tgtcgacatt gccgcgaaac atgacgatcc gcaggtcggg
     2401 ccgcaaatgc agcagctgcg cgctccgcct gggcgagctg gtgccgacgc ggccgccggc
     2461 cgggatcgcg ccgatggact ccgcgccgat cagccggtcg cgcacatcgg cgcggggcag
     2521 catcgctgcg ataacgattt cgtcgggccg gatcgtctcg acatccttca tcgagtgcac
     2581 ggcaaaatcg atcctgccgt cggccagcgc caggtcaagc tccttggtcc acagcgcctt
     2641 gccgccgatg tcggcaagcg gccggtcctg gatgcggtcg ccgctagtct tgacggtgac
     2701 gatctcgatc atcgtctccg gccagccatg cgcggcctcc agcgcgcgct tgaccatatg
     2761 cgcctgcgtc agcgccaacg gcgacccgcg cgtgccgagg cggtaagtgc ttctcatgcg
     2821 tgcgtggtta gccatacgcg gccgctccgt catcccgaac ttgtttcggg acatgcggca
     2881 cgatgcaccg agtctgctgg caagcaccgg cgccgagctg cccgaccctc gccccgaaac
     2941 aagttcggga tgacgattgt ggctgggcgt gtatgaacgt ctcgcatggc cctgatcctc
     3001 ggcatcgaat cgagctgcga cgaaacggcg gcggcgctgg tgtccagcga ccgcgcaatt
     3061 ctggcgcacc ggctggccgg ccaggaggcc gagcataccc cctatggcgg cgtggtgccc
     3121 gaaatcgccg cgcgcgcgca tgtcgaggca ctggagccgc tgattgccgc cgcgctggcc
     3181 gatgccggga aggccctcga tgaggtcgat gccatcgccg cgacggctgg gcccggcctg
     3241 atcggcggcg tgatggtggg tctcgtc
//
LOCUS       DASQVK010000235         5116 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_236516,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000235 DASQVK010000000
VERSION     DASQVK010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5116
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236516"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(45..917)
                     /locus_tag="VE567_05070"
     CDS             complement(45..917)
                     /locus_tag="VE567_05070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014077898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline iminopeptidase-family hydrolase"
                     /protein_id="HYZ48248.1"
                     /translation="MATVPGGRVYVRVNGRLDGPHLPVVMIHGGPGSSHAAFLSLLAL
                     AEERAVILYDQLDSGLSDRPGNPANWTVARFTGEVEAVRRALGIPRWHVLGHSWGGTV
                     ALEYGARRPAQLAGLVLASPLVSTRSWIADAQALRAQLPPGVQETLNQCDPPAPITSA
                     CEQATETFYANYMAREPRPETYRTYIAAHPKLRLNEGIYEAMWGSSEFVATGTLRDYN
                     GEPLLSKLDGPQTLFIDGQYDEARPATLGAFAAQVPGAEFAVVPGAGHAFFSDRLDEA
                     LGILRPWLRRHDSA"
     gene            complement(1115..2494)
                     /locus_tag="VE567_05075"
     CDS             complement(1115..2494)
                     /locus_tag="VE567_05075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010403528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="short-chain fatty acyl-CoA regulator family
                     protein"
                     /protein_id="HYZ48249.1"
                     /translation="MAKLIAGHQVRKLRRQAGLSQAAMAEQLGISPSYLNLIERNQRP
                     LTAQLLVRLSELYDFDPRSLSAAAPGGGADAIRRRLADPMFADLEIDRAELEEWLAGA
                     PGGAEAFARAYDRIGGGGAAALPSDDPTVAVRREIERWHNHFPDLDAAAEALADELRL
                     SAGDLYSAIAERLRVRHSLIIRVLPVEVLPDMLRRLDLHARQLQLSEMLDPASRTFQA
                     AFQLGAIEARGGIEALVKGAQFAERAAERLYRRHLTSYFAAALMMPYARFLRACEATG
                     YDVELLQRRFGAGFEQVAHRLTTLQRVGARGLPFFMIRIDRSGQASKRYAGASGARLV
                     EAEGRCPLWRLHNAFDRPGRIERDLVELEDSSRWFTIARTVHPQGARAGAIGAEFAIG
                     LGLAAELASPLVHARGFDLQSAATPIGLGCRHCTRPACPQRSAPPAGRALLFNERERG
                     LSAFSFVGD"
     gene            2687..3967
                     /gene="aceA"
                     /locus_tag="VE567_05080"
     CDS             2687..3967
                     /gene="aceA"
                     /locus_tag="VE567_05080"
                     /EC_number="4.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007404622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004451 - isocitrate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase"
                     /protein_id="HYZ48250.1"
                     /translation="MTDFADLVAAPEGRFDGIRRTYSSADVERLRGSVPIEHTLARRG
                     ALKLWELLKSEPYINALGALSGNQAMQMVRAGLKAIYLSGWQVAADANTAGAMYPDQS
                     LYPANAGPELCRRINRTLQRADQIEHSEGGAKRDWFAPIVADAEAGFGGPLNCFEIMK
                     AYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTQAHIRNLSAARLAADVCGVPTVLVA
                     RTDAESAKLITSDVDERDHEFLTGERTPEGFFRLKDGTGVDHCIKRGIAFAEHADLLW
                     WETSHPNLEDAKRFAEAVQKAHPGKMMAYNCSPSFNWEAKLDKDTIAKFQRELGAMGY
                     KFQFVTLAGFHQLNHGMFELARGYKDRGMAAYSELQQAEFASEAAGYTATRHQREVGT
                     GYFDLVAQAVSGGEASTTALAESTEADQFKSKAA"
     gene            4047..>5116
                     /locus_tag="VE567_05085"
     CDS             4047..>5116
                     /locus_tag="VE567_05085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013846671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYZ48251.1"
                     /translation="MAASHPHRLRSILGGSAGNLVEWYDWYAYSAFTLYFAHAFFPKG
                     DRTAQLLSAAAVFAVGFLMRPIGGWLMGVYADAKGRKAGLSLSVSLMCAGSFAIAVTP
                     TYGQIGALAPLILVLARMVQGLSLGGEYGASATYLSEMAGRRHRGFWSSFQYVTLIAG
                     QLTALALLLVLQSVLTETQIDAWGWRIPFLIGGVLAIVVFWIRRRLAETESFKNARAA
                     DARRPTALTLFRDHPREALMVMALTAGGTLAFYAYSIYMQKFLANTSGFSRETASTIM
                     TAALLVFALVQPLAGALSDRIGRKPLMVGFGVLGLVCTWPIFTTLESVRDPWTAFAIV
                     LFSLLIVTGYTSINAVVKAELFP"
BASE COUNT          884 a         1728 c         1681 g          823 t
ORIGIN      
        1 gtcggtcgcc tggaaatatg cggcggcggg cgacatcagc catttcaagc ggagtcgtgt
       61 cgccgcagcc atgggcgaag gatcccgagc gcctcatcca gccggtcgga gaaaaaggca
      121 tgacctgctc ccgggaccac cgcaaattcg gcgccgggca cctgcgcggc gaacgcgccc
      181 aatgttgccg gacgggcttc gtcatattgc ccgtcgatga aaagcgtctg cggtccatcg
      241 agcttcgaca gcagcggctc cccattatag tcgcgcaaag ttccggtagc gacgaattcg
      301 ctcgagcccc acatcgcctc gtagattccc tcgttcagcc gaagcttggg atgcgccgca
      361 atataggtcc ggtatgtctc cgggcgcggc tctcgagcca tataattggc atagaatgtt
      421 tcggtcgctt gctcgcatgc gctcgtgatc ggcgccggcg ggtcgcactg gttgagcgtt
      481 tcctgcactc caggcggaag ctgcgcacgg agcgcctggg cgtccgcaat ccagctcctc
      541 gtcgatacaa gcgggctggc gagaaccagg cccgccagct gagccggccg gcgcgcccca
      601 tattcgagcg cgacggtgcc gccccagctg tgccccaaaa cgtgccagcg cggaatgcca
      661 agtgcgcggc gcacggcttc gacctcgccg gtaaagcggg cgacggtcca gttcgccgga
      721 ttgccggggc gatccgacaa gccactgtca agctggtcgt agaggataac agcgcgctcc
      781 tcggcgagcg cgagcaggct gagaaaggca gcgtgggagc tgcccgggcc gccatggatc
      841 atgaccacgg gcaaatgcgg gccatcgagg cggccgttca cccgaacata gacgcggcct
      901 cccggaacgg tcgccatgag ctcgcgatcg ggcggcggat atgccgccgg cccccgcgcg
      961 aagatcctgc cactgggaag caacaggcca gcggcgacag acgtgcggag caattcccga
     1021 cgggagaagg agaacatggg caccccgata gggccgcggc cgcggcctga gcgaggccga
     1081 agctaacaca cgtcagaatg tccgcaatgg accttcaatc ccccacgaag ctgaacgcgc
     1141 tcagcccccg ctcccgctcg ttgaacagca gcgctcggcc agccggcggg gccgagcgtt
     1201 gggggcaggc cggacgagtg cagtgacggc agccaaggcc gatcggggtc gcggcgcttt
     1261 ggaggtcgaa gccgcgcgca tggacgaggg ggctggcaag ttcggcggca aggcccaggc
     1321 cgatcgcgaa ctctgcgccg attgcccccg cgcgggcgcc ttgcgggtgg acggtacggg
     1381 cgatcgtgaa ccagcgggag gaatcttcca gctccaccag gtcgcgctcg atccggccgg
     1441 gccggtcgaa agcgttgtgg agccgccaca aggggcaacg cccctccgcc tcgaccagcc
     1501 gtgcgccgct tgcgccggca tagcgtttgg aggcctgccc cgaccggtcg atgcggatca
     1561 tgaagaatgg cagcccgcgc gcgccgaccc gctgcagcgt ggtgagccgg tgcgcgactt
     1621 gctcgaaccc cgcgccgaag cggcgctgca gcagttcgac gtcatagccg gtcgcctcgc
     1681 acgcgcgcag gaagcgggca tagggcatca tcagcgcggc cgcgaaatag gaggtcaaat
     1741 gccggcggta cagccgctcg gccgcgcgct cggcgaattg cgcgcctttc accagcgcct
     1801 cgattccccc ccgcgcctcg atcgcgccaa gctggaacgc cgcctggaag gtgcgcgagg
     1861 cagggtccag catctccgaa agctggagct ggcgcgcatg caggtccagc cggcgcagca
     1921 tgtcggggag cacctcgacc ggcagcacgc ggatgatgag gctgtgccgc acgcgcagcc
     1981 gctccgcgat tgccgaataa aggtcgcctg cgctcagccg caattcgtcg gccagcgcct
     2041 cggctgcggc atcgagatcg ggaaaatgat tgtgccagcg ctcgatctcc cggcgtacgg
     2101 caacggtcgg atcgtcgctg ggcaaggccg ccgcgccgcc gccgccgatc cggtcataag
     2161 cgcgggcgaa cgcctccgcc ccgcccggcg ccccggccag ccattcctcg agctcggcgc
     2221 ggtcgatctc caggtccgcg aacatggggt cggcaagccg gcggcggatc gcgtccgcac
     2281 cgccgcccgg cgcggccgcg ctcagcgacc gcgggtcgaa atcgtagagc tcgctcagcc
     2341 gcaccagcaa ttgcgcggtg agcggccgct ggttgcgctc gatcaggttc agatagcttg
     2401 gcgaaatgcc gagctgctcc gccatggccg cctggctaag ccccgcttgc cgcctgagct
     2461 tgcgcacctg atgcccggca atcagcttcg ccatgctgtc ctaccccaac gtcccgccag
     2521 gttcgcttcg aacaatccaa tgggattgta aatgatttac aacatcacag gatcgaattg
     2581 aaggagagcg acaagatcac gcgaattccg cagcactcct tattccccat gcccgaattt
     2641 cgtgatgtta tccgcacaac aggcttttag ttgtaaagga ttgcacatga ccgacttcgc
     2701 cgatctcgtc gccgctcccg aaggccggtt cgacggcatc cgccggacct acagctccgc
     2761 cgatgtcgag cggctgcgcg gctcggtgcc gatcgaacac acgctcgcca ggcggggcgc
     2821 gctgaagctc tgggagctgc tgaagtcgga gccgtacatc aacgcgctgg gcgcgctttc
     2881 cggcaaccag gccatgcaga tggtccgcgc cgggctgaag gccatctact tgagcggctg
     2941 gcaagtcgcg gcggacgcga acaccgccgg cgccatgtat ccggatcagt cgctctatcc
     3001 cgccaatgcc gggccggagc tttgccgccg catcaaccgc accctgcagc gcgccgacca
     3061 gatcgagcat tcggaaggcg gggccaagcg cgactggttc gcgccaatcg tcgccgatgc
     3121 cgaggccggc tttggcgggc cgctgaactg cttcgagatc atgaaggcct atatcgaggc
     3181 gggcgcggcc ggcgtgcatt tcgaggacca gctcgcgtct gaaaagaagt gcggccattt
     3241 gggcggcaag gtgctgatcc ccacccaggc gcatatccgc aacctcagtg cggctcggct
     3301 cgcggcggac gtctgcggcg tgccgaccgt gctcgtcgcc cgcaccgacg ccgagagcgc
     3361 gaagctgatc acctcagacg tcgacgagcg cgaccatgaa ttcctgaccg gagagcgcac
     3421 gcccgagggc tttttccgcc tgaaggacgg caccggcgtc gatcactgca tcaagcgcgg
     3481 cattgccttt gccgaacacg ccgatctctt gtggtgggaa acaagccacc cgaacctgga
     3541 ggatgccaag cggttcgccg aggctgtgca gaaagcgcac ccgggcaaga tgatggcgta
     3601 taattgctcg cccagcttca actgggaagc gaagcttgac aaggacacca tcgcgaagtt
     3661 ccagcgcgag ctgggcgcaa tgggctacaa gttccagttc gtgacactgg ccggcttcca
     3721 ccagctcaac cacggcatgt tcgagctggc gcgcggctat aaggatcgcg gcatggcagc
     3781 ctattccgag ctgcaacagg ccgaattcgc gtccgaggcc gcgggctata ccgcgacgcg
     3841 ccaccagcgc gaagtcggca ccggctattt cgacctggtc gcccaggccg tgtcgggggg
     3901 cgaagccagc accaccgcgc tcgccgagag caccgaggcc gatcagttca agagcaaggc
     3961 ggcttgagga gagggagagg gagggagggc cataggtcct ccctcagctc tgtcctacag
     4021 cgccggtttc ggtctagacg accggcatgg ccgcatccca cccgcaccgc ctccgctcga
     4081 tcctcggcgg ctcggcgggc aatctggtcg agtggtacga ctggtacgcc tattcggcct
     4141 tcaccctcta tttcgcccat gccttcttcc ccaaaggaga ccgcaccgcc cagttactga
     4201 gcgccgccgc cgtgttcgcc gtcggctttc tgatgcgacc gatcggcggc tggctgatgg
     4261 gggtgtatgc ggacgccaag gggcgcaagg cggggctgtc gctctcggtt tcgctgatgt
     4321 gcgcgggctc cttcgcgatc gcggtgacgc cgacctatgg ccagatcggc gcgctggccc
     4381 cgctgatcct ggtgctcgca cgcatggtgc agggcctgag cctcggcggc gaatatggcg
     4441 cgagcgccac ctacctttcc gaaatggcgg ggcgacggca ccggggtttc tggtcgagct
     4501 tccagtatgt gaccttgatc gccggccagc tcacggcgct ggcgctgctg ctggtgctcc
     4561 agtcggtcct caccgaaacc cagatcgacg cctggggctg gcgcattccc ttcttgatcg
     4621 gcggggtact ggcgatcgtc gtcttctgga tccgacgccg cctcgccgag acggagtcgt
     4681 tcaagaacgc gcgagccgcc gacgcccgac gtcccaccgc cctcaccctg ttccgcgatc
     4741 atccgcggga ggcgctgatg gtgatggcgc tgacggccgg gggcacgctc gccttctatg
     4801 cctattcgat ctacatgcag aaattcctcg ccaacacctc gggcttcagc cgcgagacgg
     4861 cgagcacgat catgacggcc gcgctgctgg tcttcgcact cgtccagccg ctcgccgggg
     4921 cgctgtcgga ccggatcggc cgcaagccgc tgatggtcgg cttcggcgtc ctgggcctgg
     4981 tttgcacctg gccgatcttc acgacgctgg aaagcgtgcg cgatccctgg accgcgtttg
     5041 cgatcgtcct cttctcgctg ctgatcgtga ccggctacac ctcgatcaac gcagtcgtga
     5101 aagctgagct cttccc
//
LOCUS       DASQVK010000236         5413 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_268683,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000236 DASQVK010000000
VERSION     DASQVK010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5413
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268683"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            78..1166
                     /locus_tag="VE567_05090"
     CDS             78..1166
                     /locus_tag="VE567_05090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010338209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HYZ48252.1"
                     /translation="MKWFGRKAGRDAARPALARGFGMAFGSGEWPRSYEAQVRDAYTL
                     NPVAQRAVRLVAESLGSAPLLCSQPDVARLVGMTSGGQGLVETVASHALLHGNAFVQL
                     LTDKGGNVAELFALRPDRVSIEADRRGWPGAFLYRVGEVVQRIEANSVVHIRAFHPTD
                     DHYGLGCLGAAAGAVAIHNAATRWNKALLDNAARPSGALVYDTAESASLSAEQFARLK
                     AELEASFQGAVNAGRPLLLEGGLKWQALSLTPADMDFVGLKAAAAREIALAFGVPPML
                     LGLPGDATYANYREANRALWRLTILPLAGKIFGALTQGLSPWWPELTIGVDIDRVPEL
                     SEDRERLWSMISAADFLTPEEKRAAVGM"
     gene            1207..1515
                     /locus_tag="VE567_05095"
     CDS             1207..1515
                     /locus_tag="VE567_05095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006832981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6127 family protein"
                     /protein_id="HYZ48253.1"
                     /translation="MSHDALLASLLAQVEAEDASRATLRGVVEEACELGARRALASLG
                     LEDAQAGQDMRELRSLLGAWRDAKKSAVQAVVSWFVRLMLALVVLGIAVKTGLWERIA
                     "
     gene            1512..1901
                     /locus_tag="VE567_05100"
     CDS             1512..1901
                     /locus_tag="VE567_05100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013846176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0019082 - viral protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 family phage prohead protease"
                     /protein_id="HYZ48254.1"
                     /translation="MTRFAGYAAVFDHADRSGDVIRPGAFASAQKHVPLLWEHGGRVG
                     SVERVEEDGRGLRVIGAVGKQVAPGMGLSIGYRVRAARDLPLGRELLDLELIEVSLVR
                     FPMQPLARVLAVEGGADAPTPHPAQLR"
     gene            1951..3012
                     /locus_tag="VE567_05105"
     CDS             1951..3012
                     /locus_tag="VE567_05105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007715186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HYZ48255.1"
                     /translation="MMEQVTGSLEASFDAETAVPAVERPALSGARVSGSREAFVDGYL
                     RRGSEIELKSFTGAVAGDGGYAVPKEIDAMVDRALTAISPIRGIANVVRVGSAGYRKL
                     VTTGGTPAGWASETAARAETATPSFKEIAPPMGELFANPAASQAMLDDAAFDVESWLA
                     GEIATEFARAEGAAFVSGDGINKPKGFLTGTPTNEADSVRAFGTLQYLATGVAGGFAA
                     TSPQDKLIDLIQTLRTPYRQGAAFVMNSATLTRIRKFKTTDGAFLWQPAMASGQPDTL
                     LGYPVIEAEDMPDVATDSFSIAFGNFRAGYLIAERSETSILRDPFTHKPFVHFYAVKR
                     IGGAVMNSEAIKLLKFGVN"
     gene            3127..3393
                     /locus_tag="VE567_05110"
     CDS             3127..3393
                     /locus_tag="VE567_05110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48256.1"
                     /translation="MSDPFAGLVDGVSAPATRGVAVTPHDVNALAEVPKALFVGGGGD
                     LVAMGVNDTADVTFKNLAAGTVLPFRARYVRATGTTASSIVALY"
     gene            3393..4898
                     /locus_tag="VE567_05115"
     CDS             3393..4898
                     /locus_tag="VE567_05115"
                     /inference="COORDINATES: protein motif:HMM:NF027286.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4760 domain-containing protein"
                     /protein_id="HYZ48257.1"
                     /translation="MLGLGFDLPSVAVRQRGGSGGAPAATITGLQVLDAGVLPDGADA
                     AVPNGWVAKATLPDDGVSAFDPTKIVLTVQDPGFDTAGNATVVTRTIRGTAVIRKQYP
                     NHAQSLNSAAGGTRTVYFALADDIFQGSTITAAQAEAGYYGAAAAGTIGGVVNSSTVA
                     YPKPLFGWLNLQHERATGAGFNIEAVAYHRFARNGQQVACIKFQAKDAQAVPNATAAQ
                     LVSAPALSDFQTAGQRVEAWKATIPLAALAQGDLCQVGAIVYPWIGTAWDLEVEGLAW
                     PTACPQTKLRFKNDKNATYGGAVAYVKTGGTATTSAAVFAAQQDSATLTAAQTFATLA
                     TALTAIASYIEKAESTEHYRALAKAFGEAERTGKLGLLNDPKTDTDKDLRRGVLDYLN
                     HYELVALGIKHNILDERIYREWIQSHVVREWNAAAEFIQNERWRLNEAKTDFEYKSRL
                     FCQLQAAVCRWSPEALNLDENYGPKPALPADRAAPGDAPLPTVTLPPDAAT"
     gene            4936..>5413
                     /locus_tag="VE567_05120"
     CDS             4936..>5413
                     /locus_tag="VE567_05120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2163 domain-containing protein"
                     /protein_id="HYZ48258.1"
                     /translation="MPGFLDLELASFALCWRVERQDGVALGFTAHDRDLVVDGFRYRS
                     APAIAPSAIEDGDPIEADALEVAGALTADAISEADLRAGRWDGAAVRLLAVDWSDPSQ
                     WVQIMRGELGAVALDRGRFSAELKGPGAVLERAIVEETSPLCRAELGDRRCRVDMAG"
BASE COUNT          865 a         1624 c         2000 g          924 t
ORIGIN      
        1 acgctgaaga aatgtgagtc ggccggggcg gcttcgcctc ggcctttctt ttgaccagag
       61 gcagcgagag gaaagccatg aaatggttcg gcagaaaggc cgggcgggac gccgcgcggc
      121 cggccttggc gcgcgggttc ggcatggcct tcggaagcgg ggagtggccc cgttcctatg
      181 aagctcaggt acgcgacgcc tatacactga acccggttgc gcagcgggcg gttaggctcg
      241 tggcggagag cctggggtca gcgccgctcc tttgctcgca gcctgacgtg gcacgattgg
      301 tgggcatgac ttcgggcggg caggggctgg tggagaccgt cgcgtcacac gcgctgctgc
      361 atggaaacgc gttcgtccaa ctgctgacgg acaagggcgg caacgtggcc gaactgttcg
      421 cactcaggcc cgatcgggtc tcgatcgaag cggatcggcg cggatggccg ggggcgtttt
      481 tgtaccgcgt tggcgaggtt gtgcagcgga tcgaggcgaa ctccgtcgtg cacatccgtg
      541 cgtttcatcc gaccgacgat cattatggac tcggctgtct cggcgccgcc gcgggcgcgg
      601 tggcgatcca caatgccgcg acgcgctgga acaaggcgct gctcgacaat gcggcgcggc
      661 cttcgggggc actcgtctat gatacagcgg aaagcgcgag cctttcggcc gagcaattcg
      721 cgcggctgaa ggccgagctg gaggcgagct tccagggcgc ggtgaatgcc ggacgaccct
      781 tgctgctgga aggcgggctc aaatggcagg cgctgagcct gacgccggcg gacatggact
      841 tcgtggggct gaaagcggcg gcggcgcggg aaatcgcgct ggcgttcggg gttccgccga
      901 tgctgctggg gctgccgggg gatgcgactt acgccaatta tcgcgaggcc aatcgcgctt
      961 tatggcggct gacgattctg ccgctcgcgg ggaaaatatt cggcgcgctc acgcaggggc
     1021 tgagcccgtg gtggccggag ctgacgatcg gtgtcgatat cgaccgggtg ccggagctga
     1081 gcgaggatcg cgaacggctg tggtcgatga tctccgctgc ggacttcctg acgcctgagg
     1141 agaagagggc ggcggtgggg atgtagtttc gcgcgggggc gaaccaaaac ggattggaga
     1201 cgagtaatgt ctcacgatgc tttgcttgcc tcgctgctgg cgcaggtgga ggcggaagat
     1261 gcgtcgcgcg cgactttgcg cggcgtggtt gaggaggcct gcgagctggg cgcgcggcgt
     1321 gcgcttgcgt cgctggggct cgaagacgcg caggccgggc aggatatgcg cgagctgcgc
     1381 agcctgctcg gcgcctggcg ggatgcgaag aaatcggcgg tgcaggctgt ggtgagctgg
     1441 ttcgtgcggc tgatgctggc gctcgtagtg ctcgggatcg ccgtgaaaac cgggctttgg
     1501 gagcggatcg cgtgacgcgc ttcgcgggct atgctgcggt gttcgatcat gccgaccgga
     1561 gcggggacgt gatccggccc ggtgccttcg cgtcggcgca gaagcacgtg cctttgctgt
     1621 gggagcatgg cgggcgggtc ggttcggtcg agcgcgtcga ggaggatgga cgcgggctgc
     1681 gcgtgatcgg cgcggtgggg aaacaggtcg cgccaggcat ggggttgtcg atcggctacc
     1741 gggttcgggc ggcgcgcgac ctgccgctgg ggcgggaatt gctcgacctg gaactgatcg
     1801 aggtgagcct ggtgcggttc ccgatgcagc cgctggctcg ggtgctggcg gtggaaggcg
     1861 gcgctgacgc gcccacccct caccccgctc agcttcgctg agtcgccctc tccctcaagg
     1921 ggagaggggc gattttctaa gcaggagaaa atgatggaac aggtgacggg ctcgctcgag
     1981 gcgagtttcg atgcggagac ggctgtgccg gcggtggagc ggccggcgct ctccggggcg
     2041 cgcgtgtcgg gatcgcggga ggcgtttgtg gacgggtatc tccgccgcgg ctccgagatc
     2101 gagctgaaaa gctttaccgg cgcggtcgcg ggcgacggcg gctatgcagt gccgaaggag
     2161 atcgacgcga tggtggatcg cgcgctgacg gcgatctcgc cgatccgcgg catcgccaat
     2221 gtggttcgcg ttggttcggc cggctatcgc aagctggtga cgaccggcgg cacgcccgct
     2281 ggctgggcct cggaaacggc tgcgcgggcg gagacggcga cgccctcatt caaggagatc
     2341 gcgccgccga tgggcgagct gttcgccaac ccggcggcga gccaggcgat gctggacgat
     2401 gccgcgttcg acgtcgaaag ctggctcgcg ggcgagatcg cgaccgaatt cgcgcgggcc
     2461 gagggggcgg cgtttgtatc gggcgacggc atcaacaagc cgaaagggtt cctgaccggc
     2521 acgccgacca acgaagcgga tagcgtgcgg gcattcggca cgctgcaata tctggcgacc
     2581 ggtgtggcgg gtggattcgc ggccaccagc ccgcaggaca agctcatcga cctgatccag
     2641 acgctgcgta cgccctaccg ccagggcgcg gcgttcgtga tgaactcggc cacgctgacg
     2701 cgcattcgca agttcaagac caccgacggc gcgttcctgt ggcagccggc aatggcgagc
     2761 ggccagccgg acacgctgct cggctatccc gtgatcgagg ccgaggacat gcctgacgtg
     2821 gcgaccgaca gcttctcgat cgccttcggc aatttccgcg ccggctatct gattgccgag
     2881 cggagcgaga cgtcgatcct gcgcgatccg ttcacgcaca agccgttcgt gcatttctat
     2941 gcagtgaagc ggatcggcgg cgcagtgatg aacagcgaag cgatcaagct gctgaaattt
     3001 ggggtgaatt gacggagcgg gggagcggcc ttcgatggag gctgtcttcc cctcaccccg
     3061 ctcgggccgg cggcccgagt cgctctctcc cgcaggggag aggggttttc atttggggag
     3121 aatcctatgt ccgatccttt tgcgggtctg gtcgatggcg tgtcggcgcc ggcgacgcgg
     3181 ggcgtggcag tgacgccgca tgacgtgaat gcgctggcgg aagtgcccaa ggcgctgttc
     3241 gtgggtggcg gcggcgatct tgtcgcgatg ggtgtgaacg acacggcgga cgtgacgttc
     3301 aagaatttgg cggcgggcac ggtgctgccg ttccgggcgc gctatgtgcg tgcgacgggc
     3361 acgactgcct ccagcattgt ggcgctgtac tgatgctggg tctgggattc gatctgccgt
     3421 cggtcgcggt gcggcagcgg ggtggaagcg ggggagcgcc ggccgcaacg atcactggcc
     3481 tgcaggtgct cgatgctggt gtcctccccg atggggcgga tgcggcggtg cccaatggct
     3541 gggtcgcgaa ggcaacgctg cccgacgatg gtgtctccgc gttcgacccg accaagatcg
     3601 tgctgacggt ccaggacccc ggtttcgata cggcgggcaa tgcaacggtc gtgacgcgca
     3661 cgatccgggg cacagcggtg atccgcaaac aatatccgaa ccatgcgcag tcgctcaact
     3721 cggcggcggg cggcacgcgc accgtctatt tcgcactggc cgacgacatc ttccagggct
     3781 cgacgatcac tgccgcgcag gccgaggccg gctattatgg cgcggctgcg gcgggcacga
     3841 tcggcggcgt cgtcaacagc tcgaccgttg cctatcccaa gccgctgttc ggctggctga
     3901 acctgcagca cgagcgcgcg accggcgcgg gcttcaatat cgaggcggtc gcctatcacc
     3961 gcttcgcccg gaacggccag caggtggcct gcatcaaatt tcaggcgaag gatgcgcagg
     4021 cggtgccgaa cgcgacggcg gcgcagctcg tctcggctcc ggccttgtcg gacttccaaa
     4081 ccgccgggca gcgggtcgag gcatggaaag cgaccatccc gctcgccgcc ttggcccagg
     4141 gcgatctctg tcaggtcggc gcgatcgtct atccgtggat cgggacagcc tgggatctgg
     4201 aggtcgaggg cctcgcctgg ccgacggcgt gcccgcagac caagcttcgg ttcaagaacg
     4261 acaagaacgc cacctatggc ggcgctgtcg cctatgtgaa gaccggcggc accgcgacca
     4321 cgtcggccgc cgttttcgcc gcgcagcagg acagcgccac cctgacggct gcgcagactt
     4381 tcgccacgct cgcgacagca ctgactgcca tcgccagcta catcgagaaa gctgaatcga
     4441 ccgagcatta tcgcgcgctt gcaaaggctt tcggcgaagc ggagcgcacg ggcaagctcg
     4501 gcctgcttaa cgaccccaaa accgacacgg acaaagacct tcgtcggggc gtgctcgact
     4561 atctgaatca ttatgaactg gtcgcgcttg gcatcaagca caacatcctg gacgagcgga
     4621 tctaccgcga atggatccaa tcccatgtcg tgcgcgagtg gaatgccgcg gccgagttca
     4681 tccagaacga acgctggcgg ttgaacgaag ccaagaccga cttcgaatac aagtcacgct
     4741 tgttctgtca gctccaggcc gcggtgtgcc gttggtcgcc cgaggcgctg aacctggatg
     4801 agaattatgg gccgaagccc gcgctgcccg ccgaccgcgc ggcgcccggc gacgcgccgc
     4861 tcccgaccgt gaccttgccg cccgacgccg caacctgaaa agccgccgcc actccggccg
     4921 cggctggaga cgatcatgcc cggcttcctc gatctcgaac ttgcatcctt tgccctgtgc
     4981 tggcgtgtcg agcggcagga tggcgtggcg ctcggcttca ccgcgcatga ccgcgatctg
     5041 gtggtcgacg ggtttcggta ccgttcggcg ccggccatag ccccatctgc gatcgaagat
     5101 ggcgatccga tcgaagcgga cgctctcgag gtggccggcg cgctgacggc tgatgcgatc
     5161 agcgaggcgg atttgcgcgc cggccggtgg gatggcgcgg ccgtgcgact gcttgcggtc
     5221 gattggtccg acccttcgca atgggtgcag atcatgcgcg gcgagctggg cgccgtcgcg
     5281 ctcgaccggg gtcggttttc ggcggagctc aagggacctg gggcggtgct ggagcgcgcg
     5341 atcgtcgagg aaacctcgcc gctgtgccgc gctgagctgg gcgacaggcg gtgccgcgtc
     5401 gatatggcgg gtc
//
LOCUS       DASQVK010000237         4028 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_429909,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000237 DASQVK010000000
VERSION     DASQVK010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4028
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_429909"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(203..499)
                     /locus_tag="VE567_05125"
     CDS             complement(203..499)
                     /locus_tag="VE567_05125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48259.1"
                     /translation="MGSSYKSAAFLIESRLADAARGDPDACFDLGIAYSSGAGGLDID
                     LVEAHKWFNLSALAGRMRGAECRAEVAEDMTAREIAEAQRQARAWLNATQRRAA"
     gene            complement(556..1410)
                     /gene="panC"
                     /locus_tag="VE567_05130"
     CDS             complement(556..1410)
                     /gene="panC"
                     /locus_tag="VE567_05130"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HYZ48260.1"
                     /translation="MQTIRQLKPLRKALAALRAEGGKVALVPTMGALHAGHMALVAEA
                     RRRAAHVVASIFVNPKQFGPNEDLLAYPRRAAKDSAMLSEAGVALLWMPDVETMYPAG
                     FATNVSVKGVSEGLDGAARPGHFDGVATVVAKLFNQIRPNIALFGEKDFQQLAVIRRM
                     AADLDFGIEIVGVPTEREEDGLALSSRNVYLTEAERVQARALPRALGAAAAAIESGGD
                     IAEALARAQTALTEGGFQSVDYVALCDAATLEPIAALDRPARLLAAARIGAARLIDNV
                     PVNPQAAR"
     gene            1496..2284
                     /locus_tag="VE567_05135"
     CDS             1496..2284
                     /locus_tag="VE567_05135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division plane positioning ATPase MipZ"
                     /protein_id="HYZ48261.1"
                     /translation="MALSGAHVIVFANEKGGTGKSTTAVHVAVALAAQGRSVAALDLD
                     YRQRTLARYLENRAATMKRRGVELPQPRFAVVEGTSEEHFDAELARARADAEFVVVDT
                     PGRDDPIARRAATRANTLVTPMNDSFVDFDLIGQVDPESYKVSRPSFYSELIWDARKA
                     RAKVDGATIDWVVLRNRIQHIEARNMRRVGEALVALSKRVGFRIIPGLGERVIYRELF
                     PSGLTMLDIGQIPDIGLGHVAARQELRELVSGLALPDQVGAAAA"
     gene            2284..2559
                     /locus_tag="VE567_05140"
     CDS             2284..2559
                     /locus_tag="VE567_05140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HYZ48262.1"
                     /translation="MGKLLTLIALAAIVLAWWRGSQQRRRTAMSINEARALLDVGPGD
                     DADAIRAAHRRIIVRVHPDSGGTAELARRTNLAREVLLAELNRTRNN"
     gene            2598..3986
                     /locus_tag="VE567_05145"
     CDS             2598..3986
                     /locus_tag="VE567_05145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010545852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HYZ48263.1"
                     /translation="MPHLFHPTTLREYDIRGVIGETLGPDDARAIGRSFATLLRRAGG
                     TRVAVGWDGRESSPTLAAALVEGLTASGCDVVRVGLGPTPMLYYAEAVLEVDGGIMIT
                     GSHNPPSYNGFKMVFQRRPFFGADIQQVGKLAAEGDWEEADSPGEVTDFDILDQYVER
                     LTAGYQGGDFRIGWDAGNGAAGPAVEKLVKLLPGEHHLLFTDVDPRFPNHHPDPTEEK
                     NLEDLRALVRERGLDFGIAFDGDGDRIGAIDGQGRVIWGDQLLGILAEPVLKAEPGAT
                     IIGDVKASQALYDRIAELGGKPLMWKTGHSLIKSKMKEVHAPLAGEMSGHIFFAHEYY
                     GFDDALYAAVRLMGAVRLSGKSLTELKSEMPTMVNTPEMRFQVDESRKFAVIEEVLDR
                     LEAAGAEVNRTDGARVNTPDGWWLLRASNTQDVLVARAEAKDQAGLDRLMAQIDEQLA
                     LSGLKRGPQAGH"
BASE COUNT          694 a         1331 c         1361 g          642 t
ORIGIN      
        1 gaacccgtcc agaccgcagc cgtagccccg gtgcaagttg cggccgccga ggtgccgaag
       61 ccggttcccg caaccgatcg cgcgaaggcc gttcgcgacg ccgccaaggc gctacgcgaa
      121 gccctcgccg cgctcgaggc cgacgagagc gcgggcaagt aaagcgaacg cccctccctt
      181 cccctgggga ggggccttgt tttcaagccg cgcggcgctg agtggcgttc agccaggctc
      241 gcgcctggcg ttgcgcctcg gcgatttcac gcgcggtcat gtcttctgcg acttcggcgc
      301 ggcattcggc gccacgcatg cggcccgcga gcgccgacag attgaaccat ttatgcgctt
      361 cgacaagatc gatatcgagg ccgcccgcgc ctgacgaata ggcgatgccg aggtcgaaac
      421 atgcgtccgg gtcgccccgc gcggcgtccg ccaagcgcga ttcaatcaga aaagctgcac
      481 ttttgtagct gctgcccata tccactgccc cttctggtgc agccgacaga ttgggcagat
      541 ggtttttaag aatggttaac gcgcagcctg cggattcacg ggaacattgt cgatcaatcg
      601 cgcagcaccg atccgcgcgg ccgccaacag ccgcgccggc cggtcgagcg ccgcgatggg
      661 ctcaagcgtc gccgcatcgc agagcgcgac ataatccacc gactggaaac cgccctcggt
      721 caacgcagtc tgcgcacggg caagcgcttc ggcgatgtcg ccgccgctct cgatagccgc
      781 cgccgccgcg ccgagcgcac gcggcagtgc gcgggcctgc acccgctcgg cctcagtcag
      841 ataaacattg cgagacgaca gggcgaggcc gtcttcctcc cgttccgtcg gcacccccac
      901 gatctcgata ccgaaatcga gatcggccgc catgcggcgg atgaccgcga gctgctggaa
      961 gtccttttcg ccgaacaggg caatgttggg ccgtatttgg ttgaacagct ttgccacgac
     1021 cgtcgcgacg ccgtcgaaat ggccgggccg ggcggcgccg tccagcccct cgctgacgcc
     1081 cttcacggaa acattcgtcg cgaagccggc cggatacata gtctccacgt ccggcatcca
     1141 tagcagcgca acccctgcct cgctcagcat tgccgagtcc ttggcggcgc gacggggata
     1201 ggccagcagg tcctcgttcg gcccgaattg cttcgggttg acgaaaatcg aggcgacgac
     1261 atgcgcggcg cgccggcgcg cttccgccac gagcgccatg tgcccggcgt ggagcgcgcc
     1321 catcgtgggc accagcgcca ctttgccgcc ctcggcgcgc agtgcggcga gagctttacg
     1381 aagcggtttg agctgacgga tggtttgcac gggcaacctg gcttgatatg gccgggctca
     1441 atagggggag gcccgcctcc cgatcaagta accattgagc ctggaaagct gtcgcatggc
     1501 cctgagcggc gcacatgtca ttgtcttcgc aaacgaaaag ggcggcacgg gtaaatcgac
     1561 caccgccgtg cacgtggcgg tcgccctcgc cgcgcaaggc cgctcggtcg cggcgctcga
     1621 cctcgactac cggcagcgga cgcttgcccg gtatctcgag aatcgcgcgg cgacgatgaa
     1681 gcgccgcggc gtggagctgc cgcagccgcg ctttgccgtg gtggaaggga cgagcgagga
     1741 gcatttcgat gccgagctcg cccgggcgcg cgcggacgcc gagttcgtcg tcgtcgacac
     1801 gcccggccgc gacgacccga tcgcgcgccg cgccgcgacg cgcgccaaca cgctcgtcac
     1861 cccgatgaac gacagctttg tcgatttcga cctgatcggg caggtggacc ctgaaagcta
     1921 taaggtcagc cgcccgagct tctattcgga gctgatctgg gacgcgcgca aggcccgcgc
     1981 caaggttgac ggcgcgacca tcgattgggt cgtgctcagg aaccgcatcc agcacatcga
     2041 agcccgcaat atgcggcgcg tcggcgaggc gctggtcgcg ctgtcgaagc gcgtgggctt
     2101 ccgcatcatc ccgggcctgg gcgagcgcgt tatctatcgc gagctgttcc cgagcggcct
     2161 caccatgctc gatatcggtc agattcccga tatcggcctc ggccatgtcg cggcgcggca
     2221 ggagctgcgg gagctggtct cgggccttgc gcttcccgat caggtgggcg cggccgccgc
     2281 ctgatgggca agctgctcac cctgatcgcg cttgccgcga tcgtgctggc atggtggcga
     2341 ggcagtcagc agcgccggcg cacggcgatg tcgatcaacg aggcgcgcgc cctgctggat
     2401 gtgggcccgg gtgacgatgc cgacgcgata cgtgccgcgc accgccgcat catcgtgcgc
     2461 gtccatcccg attcgggggg caccgccgag cttgcccgcc gcaccaacct ggcgcgggaa
     2521 gttctgctcg cggaactcaa tcgaacccga aacaattgag cgctaaccag ccgcttagaa
     2581 cgattcccgg aggaacgatg ccgcacctgt ttcaccctac caccctgcgc gagtatgaca
     2641 ttcgcggcgt tatcggcgag acgctgggcc cagacgacgc gcgagcgatc ggccggagtt
     2701 tcgcgacgtt gctccgccgc gcgggcggca cgcgcgttgc ggtggggtgg gacgggcgcg
     2761 aaagctcgcc gacgctcgcc gcggcgctgg tcgaggggct gacggccagc ggttgcgatg
     2821 tggtccgcgt cggtctcggc cccacgccga tgctctatta tgccgaagcc gtgctcgaag
     2881 tggatggcgg gatcatgatc accggcagcc acaatccgcc gagctataac ggcttcaaaa
     2941 tggtgtttca gcgccggccc tttttcggcg ccgacatcca gcaggtcggc aagctcgccg
     3001 ccgaagggga ttgggaagaa gcggattcgc ctggcgaagt caccgacttc gacattctgg
     3061 accaatatgt ggagcggctg acagcgggct atcagggcgg cgacttccgc atcggctggg
     3121 acgccggcaa cggcgcggcg ggcccggccg tcgagaagct cgtgaagctg ctgccgggcg
     3181 agcatcacct gctcttcacc gatgtcgatc cgcgctttcc caaccaccat ccggatccga
     3241 ccgaagaaaa aaatctcgag gatctgcgcg ccctggtgcg cgagcggggc ctcgatttcg
     3301 gcattgcctt cgacggggac ggcgaccgga tcggcgcgat cgacgggcaa gggcgcgtga
     3361 tctggggcga ccaattgctc ggaatcctcg ccgagccagt gctgaaggcc gagcccggcg
     3421 cgacgatcat cggcgacgtg aaggcgagcc aggcgctcta tgaccggatc gcggagctcg
     3481 gcggcaagcc gctgatgtgg aagaccggcc acagcctgat caagtcgaag atgaaggaag
     3541 tccacgcccc gctcgccggc gagatgagcg gccatatctt ctttgcgcac gaatattatg
     3601 gcttcgacga tgcgctctac gcggcggtgc ggctgatggg cgcggtgcgg ctgtcgggca
     3661 aatcgctgac cgaactcaag tcggagatgc cgacgatggt caatacgccg gaaatgcgct
     3721 tccaggtcga tgagagccgc aaatttgcgg tcatcgagga agtgctcgac cggctggagg
     3781 cggcgggcgc cgaggtgaac cgaaccgacg gtgcgcgcgt caacacgccc gatggctggt
     3841 ggctgctccg cgcctcgaac acgcaggacg tgctggtcgc ccgcgccgag gcgaaagacc
     3901 aggccgggct tgaccggctg atggcgcaga tcgacgagca gctcgcgctc tcggggctga
     3961 agcggggccc gcaggcaggg cactaagacc cttcgcgcgg gcgaggggtt agttgcgcac
     4021 ctctttgg
//
LOCUS       DASQVK010000238         2952 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_363097,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000238 DASQVK010000000
VERSION     DASQVK010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2952
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363097"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1246
                     /locus_tag="VE567_05150"
     CDS             <1..1246
                     /locus_tag="VE567_05150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014077665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HYZ48264.1"
                     /translation="GYVQPCDAMQGYEKTIIGVVADDPAKSRFYQPFLGNKPADMSAA
                     EWSAMQARARTLITEVLNPEYRKFYDFYVKDYAPHCRKTVGASAMPNGAAWYAYRARV
                     MTTTDKTPEQIHQLGLSEVARIRAEMDRVAKQAGFPSREAFVQELRTNPKYYARTPEE
                     LLQVAALQAKRNDGLLPRYFGKLPRLPYGIKPIPAETAETTTTAYAQPGSLASGLAST
                     YWVNTSKLNQRPFWELPALTSHEAMPGHLFQLGLQQELELPDFRKYEASFTAYVEGWA
                     LYTERLGIETGIYDTPEKQMGRLSYEMWRACRLVVDTGMHAKGWTKAQAVAFMKENTA
                     LTDANIEAEVNRYISWPGQALAYKMGELKIRELRARAETALGPKFDLRRFHDAVLAQG
                     AVPLDVLETQIDAWIGAEKTRS"
     gene            complement(1338..1733)
                     /locus_tag="VE567_05155"
     CDS             complement(1338..1733)
                     /locus_tag="VE567_05155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48265.1"
                     /translation="MSRKLNWALAAAILAAPLGLPTAPALAQRNSNEQVLVVFGKDPC
                     PRDTICVRRSEGERYRIPQELRRIEPSPNSQSWAARARSMEYVGASGTNSCTPSGAGG
                     WTGCYQQMLRTAREERRAQANGQLPPEGQ"
     gene            complement(1748..2275)
                     /locus_tag="VE567_05160"
     CDS             complement(1748..2275)
                     /locus_tag="VE567_05160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="demethoxyubiquinone hydroxylase family protein"
                     /protein_id="HYZ48266.1"
                     /translation="MRPGDPKPDTAAMLRVDQAGEYGATRIYAGQLAVLGDRVPAARA
                     IAGMAAQEEEHRKRFDAMIAERGVRPTLLQPVWDVAGFALGAVTAAIGPEAAMACTAA
                     IETEIDRHYAEQLKALGEDDPELAGTIREFRDDEVAHREQALAAGAERAPAYPILFHA
                     IRFGCRAAIALSKRI"
     gene            complement(2272..2760)
                     /locus_tag="VE567_05165"
     CDS             complement(2272..2760)
                     /locus_tag="VE567_05165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006958003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HYZ48267.1"
                     /translation="MSALAQARLIALLAPAALLGGALGSQYLGGLHPCEMCYWQRWPH
                     EAAIALAILAYGLAGQPRWSRALVALAGLAIAVSGAIGVFHAGVEYHWWEGVTTCSRG
                     PSAANGADLLKAILTAPVIRCDQPQWTLLGVSLAGFNALFSFAAAIAIWALTLRKRGP
                     AR"
BASE COUNT          532 a          954 c         1006 g          460 t
ORIGIN      
        1 gggctatgtc cagccctgcg acgcgatgca gggctatgag aagacgatca tcggcgtggt
       61 ggcggacgat ccggcgaagt cgcgcttcta ccagcccttt ctcggcaaca agccggcgga
      121 catgagcgcg gccgaatgga gcgcaatgca ggcgcgggcg cgcacgctta tcaccgaggt
      181 gctcaacccc gaatatcgga aattctacga tttctacgtg aaggattatg cgccgcattg
      241 ccgcaagacg gtcggcgcat cggccatgcc caatggtgct gcctggtacg cctatcgggc
      301 gcgggtgatg accaccaccg acaagacgcc ggagcagatc caccagctcg gcctgtcgga
      361 agtcgcgcgg atcagggcgg agatggatag ggtcgcgaaa caggcgggct ttcccagccg
      421 cgaagcgttc gtccaggagc tgcggaccaa ccccaaatat tacgcgagga cacccgagga
      481 actgctgcaa gtcgcggcgc tccaggccaa gcggaatgac gggctgctgc cgcgctattt
      541 cggcaagctg ccgcggctgc cttacggcat caagccgatc cccgcggaaa ccgccgagac
      601 cacgactacg gcctatgccc agccgggctc gctcgcgtcg ggactggcga gcacatattg
      661 ggtgaatacg tcgaagctca accagcggcc tttctgggag ctgccggcgc tcaccagcca
      721 tgaggccatg ccggggcatc ttttccagct cggcctgcag caggagctgg agctgccgga
      781 cttccgcaaa tatgaggcga gctttacggc ctatgtcgag ggctgggcgc tctataccga
      841 acggctgggg atcgagaccg gcatctatga cacgcccgaa aagcagatgg ggcggctttc
      901 ctacgaaatg tggcgggcgt gccggctggt cgtcgacacc ggtatgcacg ccaaaggctg
      961 gaccaaggcc caggccgttg ccttcatgaa ggagaacact gcgctcaccg acgccaatat
     1021 cgaggcggag gtgaaccgct atatcagctg gccgggtcag gcgctcgcgt acaagatggg
     1081 cgagctcaag atccgcgagc tgcgcgcccg ggccgaaacc gcgctggggc cgaaattcga
     1141 cctgcgccgc ttccacgatg cggtgctggc gcaaggcgcg gtgccgctcg acgtgctgga
     1201 gacgcagatc gatgcgtgga ttggagcgga gaagactcga tcctgatcgt atcccgaact
     1261 tgttcggggg aaaatccggg cagcgtgacg atccggattc ccgcgtgccc cgaaacgagt
     1321 tcgggatgat gattcgatca ctgcccctcg ggcgggagct ggccgttcgc ctgggcgcga
     1381 cgttcttcgc gggcggtgcg gagcatttgc tggtagcagc cggtccagcc ccccgcgccc
     1441 gagggggtgc agctgttggt gccggaagcg cccacatatt ccatgctgcg ggcgcgcgcc
     1501 gcccagctct ggctgttcgg gctcggttcg atgcggcgga gttcctgcgg gatgcggtaa
     1561 cgctcacctt cggagcggcg gacgcagatc gtgtcgcgcg ggcaaggatc cttgccgaag
     1621 acgaccagca cctgctcgtt gctgttgcgc tgggcaagcg cgggagcggt cggcaggccc
     1681 agcggcgcgg cgagaatcgc cgcggcaagg gcccagttca gtttcctcga catgatttga
     1741 cgctccctca gatgcgcttg gacaaagcga tcgcggcgcg gcagccgaac cggatcgcgt
     1801 ggaacaatat cggataggcc ggcgcccgct cggcgccggc agcgagcgcc tgttcgcggt
     1861 gcgcgacttc gtcgtcgcgg aactcgcgga tggtgccggc gagctcggga tcatcttcgc
     1921 ccagcgcctt gagctgctcg gcataatggc ggtcgatctc cgtctcgatc gcggcagtgc
     1981 acgccatcgc cgcctcggga ccgatcgccg cggtgacggc gcccagcgcg aaaccggcga
     2041 cgtcccagac cggctgcagc agcgtcgggc gcacgccacg ctccgcgatc atcgcatcga
     2101 agcgcttgcg gtgctcttct tcctgcgcgg ccatgccggc gatcgcgcgc gcggcaggca
     2161 cgcggtcgcc cagcaccgcg agctgccccg catagatgcg cgtcgcgcca tattcgcccg
     2221 cctggtcgac gcggagcatc gccgcggtgt cgggcttggg atcgcctggc ctcatcgtgc
     2281 cggtcctcgt ttgcgaagcg tcaacgccca gatggcgatc gcggcggcaa aggagaagag
     2341 ggcgttgaaa ccggccagcg agacgccgag cagcgtccat tgcggctggt cgcagcgaat
     2401 gaccggcgcg gttaggatcg ccttcagcag gtccgcgccg ttcgcggccg acggaccgcg
     2461 cgagcaggtc gtgacccctt cccaccagtg atattcaacg ccggcatgaa aaacgccgat
     2521 cgcccccgag acagcgatgg caaggccggc aagggcgacg agagcacgcg accagcgcgg
     2581 ctggcccgcc aggccgtacg ccagaatcgc aagcgcgatc gcggcttcat gcggccagcg
     2641 ctgccaatag cacatctcgc acgggtggag gccacccaga tattgcgagc cgagcgcgcc
     2701 accgaggaga gccgcgggcg ccaacagcgc gatcaggcgg gcttgggcga gagctgacac
     2761 ttgttattgc ctccgtcacc ccgaccgcgc gccggggtcc gccttcttca aagaacaagg
     2821 tcgatgccga aacaagtccg gcatgacgga tgaaccaagg cttacttgct gcgcgatgcc
     2881 gtctggaccg ccggcagctt gtccagccgc gcgagagtgc ggaccgcata atcgagctgg
     2941 aagtccttca cg
//
LOCUS       DASQVK010000239         4484 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_331871,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000239 DASQVK010000000
VERSION     DASQVK010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4484)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4484)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4484
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331871"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..245
                     /locus_tag="VE567_05170"
     CDS             <1..245
                     /locus_tag="VE567_05170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4142 domain-containing protein"
                     /protein_id="HYZ48268.1"
                     /translation="PKHAEMLRALRSASAADRERFYVDQQVVAHQEALALHQGYAAQG
                     PNPGLRSVAEGAVPIIQRHLDEIRRIQTAMGGPVAR"
     gene            complement(242..646)
                     /locus_tag="VE567_05175"
     CDS             complement(242..646)
                     /locus_tag="VE567_05175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018251207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family DNA-binding protein"
                     /protein_id="HYZ48269.1"
                     /translation="MSRMTIARLASAGGVGVETVRYYQRRRLMAAPERNGGVRRYGED
                     DVRRLRFIKAAQAAGFTLDEIGVLLGLDATGERAKARELARTRVAAIDARIAELQAAR
                     HALARLADQCAAGAAGPCPILAAFEAVPGGVR"
     gene            715..1458
                     /locus_tag="VE567_05180"
     CDS             715..1458
                     /locus_tag="VE567_05180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
                     /protein_id="HYZ48270.1"
                     /translation="MNSPAQDTAELYRMVMPEHVCPYGLKALDLLKRKGFRVEDQWLR
                     TRAETDAFKARHGVETTPQVFIGGRRIGGYDDLRRYFGQHVPEPGATSYRPVIAVFAM
                     TALMAMAASQAALGSPFTLRAVQWFLAFSMCVLAILKLQDVERFSTMFLNYDLLAKRW
                     VPYGYVYPVAEAIAGVLMIARALTWLSAPLALFIGSVGAVSVFKAVYIDKRQLKCACV
                     GGSSNVPLGFVSLTENLLMIAMAVWMFAM"
     gene            1507..2925
                     /locus_tag="VE567_05185"
     CDS             1507..2925
                     /locus_tag="VE567_05185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48271.1"
                     /translation="MRIACLLAASALGFPFAADAQDMPGMDMGEHQHEHGEPASPAPA
                     RTENPHAGHQAGTGADMAHDHMPGMNHGSMAGMDMKGMVGALGPYSMMRDASGTAWQP
                     DSSPMWAIMGRTGGWATMVHGFATLAYDDQGGRRGAEKTFVSSMLMGMAQRPLGDGTL
                     TLRGMVSLDPLMGKRGYPLLLATGETANGRTELVDRQHPHDAFMELAATYSHPITDRL
                     STFVYVGLPGEPALGPVTFMHRFAGLANPEAPIAHHWLDSTHVTFGVATAGLTYEGFK
                     VEGSVFTGREPDQHRWDIERPRFDSWSVRGTWNPTANLSMQLSYGFLNSPEQLHPEEN
                     VRRTTASATYNLPLGANRNWQTTFAWGRNDPSGGHHRPPTDAFLLESALQLGRWTVFG
                     RGENVDKDELFEDEPGNPLAGRLFNVSKLSLGGFHTIPFGKLGFDLGGLVSKYGLPEA
                     IQPAYGADPTSFMLFARVRITG"
     gene            complement(2944..3978)
                     /gene="mtnA"
                     /locus_tag="VE567_05190"
     CDS             complement(2944..3978)
                     /gene="mtnA"
                     /locus_tag="VE567_05190"
                     /EC_number="5.3.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046523 -
                     S-methyl-5-thioribose-1-phosphate isomerase activity
                     [Evidence IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5-thioribose-1-phosphate isomerase"
                     /protein_id="HYZ48272.1"
                     /translation="MKLNGEWVRSVGRTERGVRILDQRKLPWEIEWVELTSAEHAARA
                     IREMWTRGAPLIGAVAAYGLAMALRDDPLALDTAHAMLLETRPTAVNLRWALDQVREH
                     VRNLPLDGRAAAAFARADAIADEDVALNRAIGEHGLKLLEALHARNPERPLNILTHCN
                     PGWLATVDYGTATAPIYLAHDNGLPLHVWVDETRPRNQGALLTAFELSGHGVPHSVIA
                     DNAGGLLMRRGQVDLVIVGTDRVTANGDVCNKIGTYLKALAAHDTGVPFYVALPYTTI
                     DRSLASGDDVPIEDRSGDELGWLTGPTADGALATVKVTDSDAYNPAFDVTPARLVTGY
                     ITERGVTPTI"
     gene            complement(3975..>4484)
                     /gene="mtnC"
                     /locus_tag="VE567_05195"
     CDS             complement(3975..>4484)
                     /gene="mtnC"
                     /locus_tag="VE567_05195"
                     /EC_number="3.1.3.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010404316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_function: GO:0016862 - intramolecular oxidoreductase
                     activity, interconverting keto- and enol-groups [Evidence
                     IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acireductone synthase"
                     /protein_id="HYZ48273.1"
                     /translation="RARLRDYLGAHPEEAQGVPVETLERWIDEDRKEPVLKAIQGRIW
                     RDGFERGELKGHIYPDAVAALRRWREQGLRLFVYSSGSVEAQKLLFGHSEAGDLTPLF
                     EGFFDLSTGSKLEAASYRAIAERIGLEPGEILFFSDNGREVEAARAAGFQTQLIDRTR
                     GDTFESIRH"
BASE COUNT          734 a         1574 c         1425 g          751 t
ORIGIN      
        1 tgccgaagca cgccgagatg ctccgagcgc tccgcagcgc ctccgccgcc gatcgcgaac
       61 gattctatgt cgatcagcag gtggtcgcgc accaggaagc cttggcactc caccagggtt
      121 atgccgcgca aggccccaat ccgggcctgc gcagtgtggc cgaaggcgcc gtgcccatca
      181 tccagcgcca cctcgacgag attcgtcgta tccagacggc gatgggcggc ccggtggcgc
      241 gttagcgcac tccgcccggc actgcctcga acgcggccag gatcgggcaa ggaccggccg
      301 cgcccgccgc gcattggtcc gccagccgcg ccaaagcatg tcgcgccgcc tgcagctccg
      361 cgatccgggc gtcgatcgcc gccacgcgcg tccgcgcaag ctcgcgcgcc ttcgcccgtt
      421 ccccggtcgc atcgaggccc agcagcacgc cgatctcatc aagcgtgaac ccggccgcct
      481 gcgccgcctt tatgaagcga agccgccgga catcgtcctc gccatagcgc cgcacgccgc
      541 cgttccgctc gggcgccgcc atcagtctgc gacgctgata gtagcgcact gtctccacgc
      601 ctacgccgcc tgcactggcg agccttgcga tcgtcatgcg cgacatgggc ttgactccgt
      661 accgtggtac ggaagctata ggccgtgggc gcgacgcacg acaagaggtg ccgaatgaac
      721 agccccgctc aggacactgc cgaactctac cgcatggtca tgccggagca tgtctgtccc
      781 tatgggctga aagcgctcga cctgctcaag cggaagggct ttcgcgtcga ggatcaatgg
      841 ctccgcaccc gcgccgaaac cgatgctttc aaggcccggc acggagtaga gaccacgccg
      901 caggtcttta tcggcggccg gcggatcggg ggttatgacg atctgcgccg ttatttcgga
      961 caacatgtcc cggaacccgg cgcgaccagc taccggccgg tgatcgccgt cttcgccatg
     1021 acggcgttga tggccatggc ggcaagccag gctgcgctcg gctccccgtt cacgctccgc
     1081 gccgtccagt ggttcctcgc cttcagcatg tgcgtgctcg ccattttgaa gctgcaggat
     1141 gtcgagcgat tctcgacgat gttcctcaat tacgacctgc tggcgaagcg gtgggtgccc
     1201 tatgggtatg tctatcccgt ggccgaggcg attgccggcg tgctgatgat cgcgcgtgcg
     1261 ctgacctggc tatccgcccc gctcgcgctt ttcatcggca gcgtcggcgc agtgtccgtc
     1321 ttcaaggcgg tctatatcga caagcgccag ctcaaatgcg cctgcgtcgg cggctcttcg
     1381 aacgttccgc tcggcttcgt gtcgctgacc gaaaacctgc tgatgatcgc catggcggtc
     1441 tggatgttcg ccatgtgacc cgatggggtc gcctcactcg caatcgatcg ataatcggag
     1501 aaaataatgc gcatcgcctg cctgcttgcc gccagcgcgc tcggcttccc cttcgccgca
     1561 gatgcccagg acatgcccgg catggacatg ggtgagcacc agcatgaaca tggcgagccc
     1621 gcctcccctg ctcccgcgcg aacggagaac ccccacgccg gccatcaggc cggaaccggc
     1681 gccgacatgg cgcacgacca catgcccggc atgaaccatg gctccatggc cggcatggac
     1741 atgaagggca tggtgggcgc gcttgggccc tacagcatga tgcgcgatgc gtcgggcacg
     1801 gcgtggcagc cggacagctc gccgatgtgg gcgatcatgg gccggacggg cggctgggcg
     1861 acgatggtcc acggcttcgc cactctcgcc tatgacgatc agggtggccg gcgcggcgcg
     1921 gagaagacgt tcgtgagttc gatgctgatg gggatggcgc agcggcccct tggagacgga
     1981 acgctcactc tgcgcggcat ggtcagcctg gatccgctga tgggcaagcg cggctatccg
     2041 ctgttgctcg cgacgggcga gaccgccaat ggccgcaccg aactggtcga tcgccagcac
     2101 ccgcacgatg cctttatgga gctggccgcc acctacagcc atccgatcac ggacaggctc
     2161 tccacctttg tctatgtcgg cctgcccgga gagcctgctc tcggccccgt cacgttcatg
     2221 caccgctttg cgggcctggc gaacccggaa gcgccgatcg cgcaccattg gctggattcg
     2281 acccacgtca ccttcggcgt cgcgaccgcc ggcctcacct atgaaggttt caaggtcgag
     2341 ggttcggtct ttaccggccg cgagcccgac cagcaccgct gggatatcga gcggccacgt
     2401 ttcgacagct ggtcggtgcg cggcacctgg aatccgaccg ccaacctttc gatgcagcta
     2461 agctacgggt tcctgaacag cccggaacag ctccacccgg aagagaatgt ccgccgcacc
     2521 actgcgtccg ccacctacaa tctgccgctg ggggccaacc gcaactggca aaccaccttc
     2581 gcctgggggc ggaacgaccc gtcgggcggg catcatcgcc cccctaccga cgccttcctc
     2641 ctcgaaagcg cgctccagct cggccgctgg accgttttcg gccgcggcga gaatgtcgac
     2701 aaggacgaac tcttcgaaga cgagcccggc aatccgctcg cgggccggct attcaatgtc
     2761 agcaagctga gcctaggcgg gtttcacacg atccccttcg gcaagctcgg cttcgatctg
     2821 ggcggtctcg tcagcaaata tggtctgccc gaggccatcc agcccgccta tggcgcggac
     2881 ccgaccagct tcatgctttt cgcccgggtg cggatcacgg gatgaccaca gcggctccgg
     2941 gcctcagatc gtcggcgtga cgccgcgctc tgtgatgtag ccggtcacca gccgcgccgg
     3001 ggtgacgtcg aacgccgggt tataggcgtc cgaatccgtg accttcacgg tcgccagcgc
     3061 cccgtcggct gtcgggccgg tgagccagcc aagctcgtcg ccgctccggt cctcgatcgg
     3121 cacgtcgtcg cccgaggcga ggctgcggtc gatcgtcgtg taggggagcg ccacatagaa
     3181 gggcacgcca gtgtcgtgtg cagcaagcgc cttcagatag gtgccgatct tgttgcacac
     3241 atcgccattg gcggtgacgc ggtcggtgcc gacgatcacc agatcgacct ggccccgacg
     3301 catcagcagc ccgccggcat tgtcggcgat cacgctgtgc ggcacgccat ggcccgaaag
     3361 ctcgaaggca gtgagcagcg cgccctggtt gcgtggccgc gtctcgtcga cccagacgtg
     3421 gagcggcagg ccgttgtcgt gcgccagata gatgggcgcg gtggcggtgc cgtaatcgac
     3481 ggtcgcaagc cagccgggat tgcaatgcgt caggatgttg agcggccgct ccggattacg
     3541 cgcgtgcagc gcttccagga gcttcaagcc atgctccccg atcgcacggt tgagcgccac
     3601 gtcttcgtcc gcgatcgcgt ccgcccgcgc gaaggcggcc gccgcgcgcc cgtcgagcgg
     3661 caagttacgg acatgctccc gcacctggtc cagcgcccag cgcagattga ccgcggtcgg
     3721 ccgcgtctcg agcagcatcg catgggcagt gtcgagcgcg agcggatcgt cgcgcagcgc
     3781 catcgcgagt ccataggctg cgaccgcccc gatcagcggc gcgccccgcg tccacatctc
     3841 gcggatcgct cgcgccgcgt gctcggcgga agtgagctcg acccactcga tctcccaggg
     3901 gagcttgcgc tgatcgagga tgcgcacgcc gcgctccgtc cgcccgaccg agcgcaccca
     3961 ttcaccgttc agcttcaatg ccggatgctc tcgaacgtgt cgccgcgcgt gcggtcgatc
     4021 aattgggtct ggaagccggc cgcccgtgcc gcctcgactt cgcgcccatt gtcggaaaaa
     4081 aacaggatct cgcccggctc cagcccgatc cgctcggcga tcgcgcgata ggaggccgcc
     4141 tccagcttgg agccggtcga aaggtcgaaa aagccttcga agagcggcgt aagatcgccc
     4201 gcctcggaat ggccgaacag cagcttttgc gcttccaccg agccggagga atagacgaac
     4261 aggcggaggc cctgctcccg ccagcgccgc agcgccgcga cggcatccgg gtagatatgc
     4321 cccttcaatt cgccgcgctc gaacccgtct cgccagatcc tcccctggat ggccttaagt
     4381 accggctcct tgcggtcctc gtcgatccag cgctcgagcg tctcgacggg cacgccctgc
     4441 gcttcttcgg gatgcgcgcc gagataatcg cggagccgcg cccg
//
LOCUS       DASQVK010000240         3164 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_79276, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000240 DASQVK010000000
VERSION     DASQVK010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3164
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79276"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..786)
                     /locus_tag="VE567_05200"
     CDS             complement(<1..786)
                     /locus_tag="VE567_05200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010216167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HYZ48274.1"
                     /translation="MADADFRAERRTSTAMPLPNKVALVLQGGGALGSYQAGVYQALH
                     EQGIEIDRVAGISIGGINAAIIAGNPPELRSKRLSAFWERVSSWMPSFPMPTDHDKWR
                     EYLHEISAGFVAMVGVPGFFGPRFVPPMLAQPGTPDALSFYDATPLRKTLDDLIDWDL
                     LNDGPIELSVGAVNIRSGNLRFFSNRKERLDARHIIASGALPPGLPPVEIDGELWWDG
                     GIVSNTPLQHLLDQDERLNTLVFQVDLFSARGALPRDIQDVMGR"
     gene            864..1751
                     /locus_tag="VE567_05205"
     CDS             864..1751
                     /locus_tag="VE567_05205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HYZ48275.1"
                     /translation="MRLDDYRTSDNVGDQRGQSFGGGFGGGGGGLGLLLGLVGSRFGI
                     GGVIVVLLGAWLLGMFGGGGGQRAVAPGQQAGGKSAAQICSVDAASRFSCQVLASTED
                     SWARIFQQSGARYTPTTLVFYSGRGQSGCGAAQSAMGPFYCPTDKSVYLDTDFYSELS
                     QRFGAKGDFAQAYVIAHEVGHHVQDLMGTLDKAHNLQARASEAEGNAVQVRVELQADC
                     YAGVWAAANRNRLEPGDVEEGMTAASAIGDDTLQRETQGRVVPESFTHGTSEQRMRWL
                     RKGMDTGDPAQCDTFSGAI"
     gene            complement(1748..2155)
                     /locus_tag="VE567_05210"
     CDS             complement(1748..2155)
                     /locus_tag="VE567_05210"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYZ48276.1"
                     /translation="MNLPFGLIGIDHVVLLVSGMDRARSFYERVLGCTLSTELLESGM
                     IQMRAGESLIDLVDIATPEGAWARPAVAGGRNVDHVAIAITDCDPAALKMHLEQHGVA
                     VEEEGMRAGARGESWSIYFRDPDQNLIELSLPA"
     gene            complement(2152..3138)
                     /locus_tag="VE567_05215"
     CDS             complement(2152..3138)
                     /locus_tag="VE567_05215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HYZ48277.1"
                     /translation="MRAWVLKSRPEGVPERSDFELADLPDRPLEDGQIRVRNRWLSVD
                     PYMRGRMNDVKSYVPPFALDEPMQGGAVGEVLESRNPGFAPGDKVLHMAGWRDEAVIG
                     AEAMPQKLPDIGVSDDTWLHNLGLTGGTAYFGLLRVAEAKAGDIVFVSAAAGAVGSAV
                     VQIAKLKGMTVIGSAGGPDKVAFVKQLGADACIDYKAGAVLPQLAQAAPQGIDVYFDN
                     VGGEHLDAAFATARQWARFAICGMIDVYNDGKPQELKYLIRTIPTRLTMRGFLWTDFF
                     GELDTFQREMGAWVASDQIKARTTVKDGIESTLDAFLGLFEGANTSKMLVRL"
BASE COUNT          540 a         1051 c         1038 g          535 t
ORIGIN      
        1 ccggcccatc acatcctgga tgtcgcgcgg cagcgccccg cgcgcgctga acaggtcgac
       61 ctggaacacc agcgtgttga gccgctcatc ctggtcgagc aggtgctgca gcggcgtgtt
      121 ggagacgatg ccgccgtccc accagagttc gccgtcgatc tcgaccggcg gcaggccggg
      181 cggcaacgcg cccgacgcga tgatgtgccg ggcgtccagc cgttccttgc ggttgctgaa
      241 aaagcggaga ttgccgctcc tgatattgac ggcgcccacc gagagctcga tcgggccgtc
      301 gttcagcaaa tcccagtcga tcagatcgtc gagcgttttc ctgagcggcg tcgcgtcata
      361 gaagctgagc gcgtcgggcg tgcccggctg tgcgagcatc ggcggcacga agcgcggccc
      421 gaaaaagccg ggcacgccca ccatggcgac gaagccggcc gagatttcgt ggaggtattc
      481 gcgccacttg tcgtggtccg tcggcatcgg gaagctcggc atccagctcg acacccgttc
      541 ccaaaaagcg ctcaagcgct tgcttcgcag ttcgggcgga ttgccggcaa taattgcggc
      601 gttgatgccg ccgatcgaaa tgccggcgac ccgatcgatc tcgatgccct gctcatgcaa
      661 cgcctgatag acacccgcct ggtacgagcc gagcgcgccg ccaccttgca acacgagcgc
      721 aactttattc ggcagcggca tcgccgtgct ggtgcgtctt tcggcgcgga aatctgcatc
      781 ggccatatcg tcccctagcc gcctgcgata atgaagggca actgaacgct tgcccgaaca
      841 ttgtgacggc ggaaggacca accatgcgcc tcgacgacta ccgcaccagc gacaatgtgg
      901 gcgaccagcg cggccagagc ttcggcggcg gctttggcgg aggtggcgga gggctgggcc
      961 tgctgctggg cctggtcggc agccgcttcg gcatcggtgg cgtcatcgtc gtgctgctgg
     1021 gcgcctggct gctcggcatg ttcggtggcg gcggcggaca gcgggcggtg gcgccggggc
     1081 agcaggcagg cggcaagagc gcagcgcaaa tctgctcggt cgatgcggcc agccgcttct
     1141 cctgccaggt gctggccagc acggaggaca gttgggcgcg catcttccag caatcgggcg
     1201 cgcgctacac gccgactacg ctcgtctttt attcgggccg cggccagtcc ggctgcggag
     1261 cggcgcagtc ggcgatgggg ccattttatt gcccaaccga caagagcgtc tatctcgaca
     1321 ccgatttcta cagcgaatta tcgcagcgct tcggcgccaa gggcgatttc gcgcaggcct
     1381 atgtcatcgc gcacgaagtc gggcatcacg tccaggacct gatgggcacg ctcgacaagg
     1441 cgcacaatct ccaggcgcgc gccagcgaag ccgaaggcaa tgcggtccag gtccgggtcg
     1501 agcttcaggc cgattgctat gccggcgtct gggcggcggc gaaccgcaat cggctggagc
     1561 ccggcgacgt cgaggaaggc atgaccgccg cttcggcgat cggcgacgac acgctgcagc
     1621 gcgagaccca gggacgtgtc gtgcccgaaa gcttcacgca cggcacctcc gagcagcgga
     1681 tgcgctggct gcgcaagggc atggacaccg gcgaccccgc ccagtgcgac acgttcagcg
     1741 gggcaatcta ggctggcagg ctgagttcga tcagattctg gtccgggtcg cggaaataga
     1801 tcgaccaact ctcgccgcgc gcgccggcgc gcatgccttc ctcttcgacc gcgacgccgt
     1861 gctgttccag atgcattttc agcgccgccg gatcgcagtc cgtgatcgcg atcgcgacgt
     1921 gatcgacatt acggccgccg gccacggccg gccgagccca tgctccctcg ggcgtggcga
     1981 tgtcgaccag atcgatcagc gactcgcccg ccctcatctg gatcatgccc gattcgagca
     2041 gctcggtgct gagcgtgcag ccgagcacgc gttcgtagaa cgagcgcgct cggtccatgc
     2101 cgctgaccag aaggacaaca tggtcgatcc cgatcaggcc gaacggcagg ttcatagccg
     2161 cacgagcatc ttgctggtgt tcgccccctc gaagagcccg aggaaagcgt cgagtgtcga
     2221 ctcgatcccg tccttcacag tcgtgcgcgc cttgatctgg tcgctggcga cccaggcgcc
     2281 catctcgcgc tggaacgtgt cgagctcgcc gaaaaaatcg gtccagagga agccgcgcat
     2341 cgtcaaccgc gtggggatcg tgcggatcag atatttgagc tcctgcggct tgccgtcgtt
     2401 atagacgtcg atcatgccgc agatcgcgaa ccgcgcccat tggcgagcgg tggcaaaggc
     2461 ggcgtcgaga tgctcgccgc cgacattgtc gaaatagacg tcgatgccct gcggcgcggc
     2521 ctgggcgagc tggggcagca ccgcaccggc cttatagtcg atgcaggcgt cggcgccgag
     2581 ctgcttcacg aacgcgacct tgtccggccc gccggccgag ccgatcaccg tcatgccttt
     2641 cagcttcgca atctgcacca ccgccgagcc gaccgcgccg gctgccgccg acacgaaaac
     2701 gatgtcgccc gccttggcct cggccacccg gagcagcccg aaataggcgg tgccgccggt
     2761 gaggccgaga ttatggagcc aggtatcgtc ggacacgcct atgtcgggaa gcttttgcgg
     2821 catcgcttcg gcgccgatca ccgcctcgtc gcgccagccg gccatgtgca gaaccttgtc
     2881 gccgggggca aagccgggat tgcggctttc gagcacttcg ccgaccgcgc cgccctgcat
     2941 cggctcgtca agcgcgaagg gcgggacata gcttttcacg tcgttcatgc ggcctcgcat
     3001 gtacggatcg accgacagcc agcgattgcg gacgcggatc tgtccgtcct cgagcggccg
     3061 gtcggggagg tcagcgagtt cgaaatcgct ccgctccggc actccctctg gacgtgattt
     3121 cagcacccag gcccgcattt tacctctcca gcatctgtcg tgtc
//
LOCUS       DASQVK010000241         3952 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_430333,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000241 DASQVK010000000
VERSION     DASQVK010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3952
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_430333"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..935
                     /locus_tag="VE567_05220"
     CDS             <1..935
                     /locus_tag="VE567_05220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="heparinase II/III-family protein"
                     /protein_id="HYZ48278.1"
                     /translation="LLRAAYEARREAPLPAIEATLAAAVPALLGVCHGDGGLASWQGG
                     LPLGLDRVTPVIEASRVRARPLRQARAWGYQRLSGGATVVSMDAAPPPASRAASFGCA
                     STLAFEMSDGPHRLVISCGGARNPGVALSAELAQALRATAAHSTLIVADANSTAVHAE
                     GSLGRGVIEVEIDRQELESGSRVEASHDGYARRYGLLHRRQLMLSVDGRQLSGEDMLL
                     PAGRRKRAAPFAIRFHLAPNVEVTLTADSLGALLRIEDGPLWQFRCKGGVLGVEESLW
                     VDAAGRPRPTQQLIIAAESPPGGANVSWLFKRAG"
     gene            966..2537
                     /gene="purH"
                     /locus_tag="VE567_05225"
     CDS             966..2537
                     /gene="purH"
                     /locus_tag="VE567_05225"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007686983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HYZ48279.1"
                     /translation="MTDIQIKRALLSVSDKTGLAELGRALADRGVELVSTGGTAKALR
                     DAGLTVRDIADLTGFPEMMDGRVKTLHPKVHGGLLGVRDNPEHAAAMEAHGIGAIDLV
                     VANLYPFAQTVARGAERDEIIENIDIGGPSMVRSAAKNHAFVAIVTDPADYAVVAKGS
                     TSIEERKRLAAKAFALTAQYDATISSWFAFADQGQQLPETLTVPLKLGQELRYGENPH
                     QQAALYLPTGPAARGIAQAEQLQGKELSYNNFNDADAALELAAEFKDGPPTVVIVKHA
                     NPCGVATGDTLIEAYRAAFACDTVSAFGGIVACNRPLDGPTAEAITEIFTEVVVAPDA
                     DEAARAVFRAKKNLRLLLCGELPDPKRPGLMLKSIAGGMLVESRDNGVIVDGHLKVVT
                     KREPTLQELADCRFAWTVAKHVKSNAIVYAKDGATAGIGAGQMNRLESARIAAWKAKD
                     AAEKAGWPQPKTIGSAVASDAFFPFADGLLAAVEAGATAVIQPGGSIRDEEVIGAADE
                     AGLAMIFTGMRHFRH"
     gene            complement(2547..>3952)
                     /locus_tag="VE567_05230"
     CDS             complement(2547..>3952)
                     /locus_tag="VE567_05230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HYZ48280.1"
                     /translation="GRLYGPDALGRFAYAILVIEFAAQLATLGLKRGLAQQLSSAERP
                     HVFVVWDALLVAGAASAIAAALLVALPELMFPNSQVNGLDELLPLVVFALAWSDVSLA
                     ALAYRHNVAATVRARAVIEPWTISIAAGALYFYSARDGLILAYALSLVAALIASIVPL
                     IRSYGLPHGWSPQPIALFTIARRNAPLAAADAIEWGTRNVDRAILGLFFPPSVVGIYW
                     VAQQIATLPQKLKTSFDPILGPVITQSLAGGDRAAVAAQVRQVGFWIIAAQAGIALAL
                     TIPGKAVMGLAGPQFVSGTGALAFLMFAEVVAATAVVSEAALVYIARVRNMLISLATI
                     LIQIALSFALIFGLREAGFPQQIQAVGPAIALPIALGFAAVVKARLLSRLLEAPVWPW
                     RRALVWAAAAATLVGWIATRVPEWLELVVGMPAILISYGAFIWIKGFTKEDRVLFRLK
                     KGDEPTLPAPGTTRQAR"
BASE COUNT          683 a         1352 c         1349 g          568 t
ORIGIN      
        1 gcctgctccg cgccgcctat gaagcgcggc gcgaggcgcc attgcctgca atcgaggcga
       61 cgcttgccgc cgccgtgccg gcgctgctcg gcgtctgtca cggcgatggc gggctggcga
      121 gctggcaggg cgggctgccg ctcggcctcg accgcgtgac ccctgtgatc gaggcgtcgc
      181 gcgttcgcgc gcggccgctc cgccaggcgc gtgcctgggg ctatcaacgc ctgtccggcg
      241 gcgcgaccgt ggtctcgatg gacgccgcgc cgccgcccgc ctcccgcgcg gcgagcttcg
      301 gctgcgcctc gaccttggcc ttcgagatgt cggacgggcc gcaccggctg gtcatcagtt
      361 gcgggggcgc ccgcaatcca ggcgtagcgc tgtccgccga gctggctcag gcgctgcgcg
      421 ccacggccgc gcactcgacc ctgatcgtcg ccgacgcgaa ctcgaccgcg gtgcatgccg
      481 agggcagcct gggccgcggc gtgatcgagg tggagatcga ccggcaggag ctcgaatcgg
      541 gcagccgcgt ggaagcaagc catgacggct atgcgcggcg ctacggcctg ctccaccggc
      601 gtcagctgat gctgagcgtc gatgggcgcc agctttcggg cgaagacatg ctgctccccg
      661 ccggccgccg caagcgcgcc gcgccgttcg ccatccgctt ccatctcgcg cccaatgtgg
      721 aagtgacgct caccgccgat agcctgggcg cgctgctacg gatcgaggac gggccgctct
      781 ggcagttccg ctgcaagggc ggcgtgctgg gcgtggagga aagcctttgg gtcgatgcag
      841 cgggccgacc gcgcccgacg cagcaattga taatcgcggc tgagtctccc ccgggcggcg
      901 cgaacgtgag ctggctgttc aagcgggctg gctaggcgcg cctgctttgc cctaaggggc
      961 gcgccatgac cgatatccag atcaagcgcg ccctcctctc cgtttccgac aagaccggcc
     1021 tggccgaact cggccgcgcc ctcgcagatc gaggcgtcga gcttgtctcc accggcggga
     1081 cagcgaaggc gctgcgcgac gcggggctca ccgtccgcga cattgccgac ctgaccggct
     1141 ttcccgagat gatggatggg cgagtgaaga cgcttcaccc gaaggttcat ggcgggctgc
     1201 tcggcgttcg cgacaatccc gaacacgcgg cggcaatgga ggcgcacggg atcggcgcga
     1261 tcgacctggt ggtcgccaat ctctacccgt tcgcgcagac cgtcgcccgc ggggcggagc
     1321 gcgacgaaat catcgagaat atcgacattg gcggaccctc gatggtgcgc tcggcggcga
     1381 agaatcacgc ctttgtcgcg atcgtgaccg atccggccga ctatgccgtc gtcgccaagg
     1441 gttccacctc gatcgaggag cgcaagcggc tcgctgccaa ggcgttcgcg ctcaccgccc
     1501 aatatgacgc gaccatttcc tcctggttcg ccttcgccga ccagggccag cagctccccg
     1561 agaccctgac agtgccgctg aagctcggcc aggagctacg ctatggcgag aacccgcacc
     1621 agcaggcagc cctttacctc cccaccggcc ctgccgcgcg cggcatcgcc caggccgagc
     1681 aattgcaggg caaggagctc agctataaca atttcaatga cgccgacgcg gcgctggagt
     1741 tggccgccga gtttaaggat gggccgccga cggtggtcat cgtcaagcac gccaatccct
     1801 gcggcgtcgc gaccggagac actctgatcg aggcgtaccg ggccgccttt gcctgcgaca
     1861 cggtctccgc gttcggcggc atcgtcgcct gcaaccggcc gcttgacgga ccgacggcgg
     1921 aggcgatcac tgagattttc accgaggtcg tggtagcccc ggacgccgac gaggccgcgc
     1981 gcgctgtctt ccgcgccaag aagaatttgc ggctgctgct gtgcggcgaa ttgcccgatc
     2041 cgaagcggcc ggggctaatg ctgaaatcga tcgccggcgg catgctggtc gagtcgcgcg
     2101 acaatggggt gatcgtcgac ggccatctga aggtcgtcac caagcgcgag ccgactctgc
     2161 aggaactcgc cgattgccgc ttcgcatgga cggtggccaa gcacgtcaag tcgaacgcga
     2221 tcgtctatgc gaaggacggc gcgaccgcgg gcatcggcgc cgggcagatg aaccggctcg
     2281 aatcggcgcg gatcgcggcc tggaaagcca aggacgcggc tgaaaaggcg ggctggcccc
     2341 agccgaaaac gatcggctcg gcagtcgcct ccgacgcctt cttccccttc gccgacgggc
     2401 tcctcgcggc cgtcgaggcc ggcgcgacgg cggtgatcca gccgggcggc tcgatccgcg
     2461 acgaggaagt gatcggcgcg gcggacgaag ccgggctggc gatgatcttc accggcatgc
     2521 ggcatttccg gcactaggga cgcggcttac cgcgcctggc gcgttgtgcc gggcgcagga
     2581 agcgtaggct cgtcgccttt cttgagccgg aacagcacac ggtcttcctt cgtgaatccc
     2641 ttgatccaga tgaacgcgcc atagctgatc aagatcgctg gcatgccgac gaccagctca
     2701 agccattccg ggacccgtgt cgcgatccag ccgaccaaag tggccgctgc ggcagcccat
     2761 accaaggccc ggcgccaggg ccagaccggc gcctccagca gccgcgagag cagccgcgcc
     2821 ttcaccaccg ccgcaaaacc cagagcgatc ggcagagcga tcgcgggccc gaccgcctgg
     2881 atctgctgcg ggaaccccgc ttcccgcagg ccgaaaatca gagcgaagct caaggcgatc
     2941 tggatgagga tcgtcgccag cgagatcagc atgttgcgga cgcgcgcaat ataaacgagc
     3001 gcggcttccg agacgaccgc agttgccgcc accacttcgg cgaacatgag gaaagcgagc
     3061 gcgccggtac cgctgacgaa ttgcgggccg gccaggccca tgactgcctt gccgggtatg
     3121 gtgagcgcga gcgcgatgcc ggcctgagca gcgatgatcc aaaagccgac ttgccgcact
     3181 tgcgcggcga ccgccgcccg gtcgccgccg gcgaggctct gcgtgatgac cggacccagg
     3241 atcgggtcga agctggtctt cagcttctgc ggtaacgtcg caatctgctg ggcgacccag
     3301 taaatgccaa ccaccgatgg cggaaagaac aggccgagaa tcgcgcggtc gacgttgcgc
     3361 gtgccccact cgatcgcgtc ggcggctgcg agcggcgcgt tgcggcgcgc gatggtgaac
     3421 agggcgatcg gctgcgggga ccagccatgc ggcagcccgt agctgcggat gagcggcacg
     3481 atcgatgcaa tcagcgccgc gaccaacgag agtgcatagg cgagaatcag cccgtcgcgc
     3541 gccgagtaga aatagagcgc gccggccgcg atgctgatcg tccatggctc gatcaccgcc
     3601 cgcgcgcgca ccgtcgctgc gacattgtgg cgataggcga gcgctgccag cgacacgtcc
     3661 gaccaggcga gcgcgaaaac gaccagaggc agcaactcgt ccagcccgtt cacctgactg
     3721 ttcggaaaca tgagctcggg cagggccacc aatagcgccg ccgcgatcgc cgacgcagcg
     3781 ccagcaacca gcagcgcatc ccagaccacg aaaacatgag ggcgctcggc ggaggaaagc
     3841 tgctgcgcga gcccccgctt caaccccaag gtcgcgagct gggcggcgaa ctcgatcacc
     3901 aggatcgcat aggcgaaacg gcccagcgca tcggggccgt agaggcgccc gg
//
LOCUS       DASQVK010000242         2662 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_236900,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000242 DASQVK010000000
VERSION     DASQVK010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2662
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236900"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1802)
                     /locus_tag="VE567_05235"
     CDS             complement(<1..1802)
                     /locus_tag="VE567_05235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HYZ48281.1"
                     /translation="MKLLSTAALAALAAASAAPASAEMQRYSVIFGDKNVGHLNADVQ
                     AGGQVAIDYDYKNNGRGPTMKEAIRLDANGLPTAWDITGATTFGSKVEEHFTASRGKA
                     SWTDSTGKGSAVVKERAVYVAQSGSPWSTGLYARAIMKAGGTTLPALPGGTLKLVKGE
                     TLAVNGQGGPLQVTRYDLAGIDTSPDTVLLDPEGNLFAYVTPNSVTVRAGYEAEQERL
                     KTLAAQWSTDRFVDIQKKVAHRFDAPVRIRNVRVFDPRTQSLTGPVSVLVSGNKIAAI
                     EPLDEPATKGEVTIDGAGGTLVAGLYEMHAHTDQDGALLNLIAGVTTMRDMGNDNAVL
                     AKLIERINSGVIAGPRIVRAGFVEGKSPYSANNGILVNSEQETIDAVRWYAAHDYWSI
                     KSYNSMNPAWIPALVKEAHRLGLKVQGHVPAFATADQMLEAGFDEMTHINQFMLGWVI
                     QPTEDTRTLFRLTALKRLPGLDLNSPKVQHTIDLMVQHHVPIDVTLGIHENLLLNRDG
                     QMPRGAVDYFSHMPIGTQRGLKKAWIDTSAPGDDAAYRGAYDKIVQTIRMLNDKGVMI
                     VPGTDTGGSFTYHRELELYQTVGMTAPQILKRAT"
     gene            complement(1899..>2662)
                     /locus_tag="VE567_05240"
     CDS             complement(1899..>2662)
                     /locus_tag="VE567_05240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010187797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYZ48282.1"
                     /translation="LKPEKSRNLLFGGVYSPAWARESGFASSFSIEANYYDIRVKKAI
                     GAVDPNLTLNNCALRGDAASCALVIRTSNGFINEIDGTLQNLDSIRTQGVDLTVNYRS
                     PETGFGMFGLAANAVWLTKYILSASNGFVVIDRRGTERGSPDQAYPKFKGNATVDWTI
                     GEITAAFTGRYIDSVTEIDGSGNPNKLDSRFYGDIQLTYTPSFFDRRFTFTAGVNNVF
                     NQDPPACFSCSLNNYDPTTYDVPGQFGYLRISYKM"
BASE COUNT          418 a          801 c          919 g          524 t
ORIGIN      
        1 caggtcgcgc gcttcaggat ctgcggcgcg gtcatgccca ccgtctgata cagttccagc
       61 tcgcggtgat aggtgaagct gccgccggta tcggtgccgg ggacgatcat cacgcccttg
      121 tcgttcagca tccggatcgt ctggacgatc ttgtcatagg cgccgcgata ggcggcgtcg
      181 tcgccggggg ccgaggtgtc gatccaggcc tttttcagcc cgcgctgggt gccgatcggc
      241 atgtggctga aataatcgac cgcgccacgc ggcatctggc cgtcgcggtt cagcagcaga
      301 ttctcgtgga tgccgagcgt cacgtcgatc gggacatgat gctgcaccat caggtcgatc
      361 gtgtgttgca ccttggggct gttgaggtcg aggcccggca ggcgcttgag cgcggtcagg
      421 cggaacagcg tgcgggtgtc ctcggtcggc tggatgaccc atcccagcat gaactggttg
      481 atgtgcgtca tctcgtcgaa gcccgcctcg agcatctggt cggcggtggc gaaagcgggg
      541 acgtggccct gaaccttgag gcccaggcga tgcgcctcct tgaccaaggc gggaatccag
      601 gccgggttca tgctgttgta cgatttgatc gaccaataat cgtgcgccgc gtaccagcgc
      661 acggcgtcga tcgtttcctg ctcgctgttg accaggatgc cgttgttcgc gctgtagggg
      721 ctcttgcctt cgacgaaacc ggcgcggacg atgcgcggac cggcgatcac gcccgagttg
      781 atgcgctcga tcagtttggc gagcacggcg ttgtcattgc ccatgtcgcg catcgtcgtg
      841 acgccggcga tcaggttcag cagcgcgccg tcctggtcgg tatgggcgtg catttcgtac
      901 aggccggcga cgagcgtgcc gccggctcca tcgatcgtga cttcgccctt ggtggccggc
      961 tcgtcgaggg gctcgatcgc ggcgatcttg ttgccgctga cgagcactga gaccgggccg
     1021 gtgaggctct gggtcctggg atcgaaaacc cggacattgc ggatccgcac cggcgcgtcg
     1081 aagcggtggg cgactttctt ctggatgtcg acgaagcggt cggtcgacca ttgcgccgcg
     1141 agtgtcttca gccgctcctg ctcggcctcg tagccggcgc ggacggttac cgaattgggc
     1201 gtcacatagg cgaacagatt gccctcggga tcgagcagga ccgtatcggg cgaggtgtcg
     1261 atgcccgcca gatcgtagcg cgtcacctgg agcgggccgc cctggccgtt gacggccagc
     1321 gtctcgccct tgacgagctt cagcgtgccg ccgggcaggg caggcagggt ggtgccgccg
     1381 gccttcatga tcgcacgggc gtaaaggccg gtcgaccagg ggctgccgct ctgcgcgaca
     1441 tagacggccc gctccttgac gacggcgctg cccttgccgg tcgaatcggt ccagctcgcc
     1501 ttgccgcgcg acgctgtgaa atgctcctcg actttcgagc cgaaggtggt ggcgccggtg
     1561 atgtcccagg cagtgggcag gccgttcgcg tcgaggcgga tcgcctcctt catcgtcggg
     1621 ccgcggccgt tgttcttata gtcgtagtcg atcgcgacct ggccgccggc ttgtacgtcg
     1681 gcgttgaggt gcccgacatt cttgtcgccg aagatgacgc tgtagcgctg catttcggcc
     1741 gaggcgggag cggcggacgc cgcggcgaga gcggcgagcg ccgcggtgct gagaagcttc
     1801 atggaccatg gctggtaaga cgctgatccg aaacgcgcaa tgccctcctt cagggcgccg
     1861 gcggatcggc gggaccagag gccccgccgc cgcccagcct acatcttgta gctgatgcgc
     1921 aggtaaccga actggcccgg cacgtcgtat gtggtcgggt cgtaattgtt gaggctgcac
     1981 gaaaaacagg ccggcggatc ctggttgaac acgttgttca cgccggccgt gaaagtgaag
     2041 cgccggtcga agaacgacgg ggtgtaggtg agttggatat cgccatagaa gcggctgtcc
     2101 agcttgttcg gattgccgct gccgtcgatc tcggtgacgc tgtcgatata gcggcccgta
     2161 aaggcagccg tgatctcgcc gatcgtccag tcgacggtcg cattgccctt gaacttggga
     2221 taggcctggt cggggctgcc gcgctcggtg ccgcgccgat cgatcaccac gaagccgttc
     2281 gacgccgaca gtatatattt ggtcagccag accgcattcg cggcaaggcc gaacatgccg
     2341 aagccggttt cgggcgagcg atagttgacg gtcaggtcga cgccttgggt gcggatgctg
     2401 tcaaggttct gcagcgttcc gtcgatctcg ttgatgaagc cgttgctggt gcggatcacc
     2461 agcgcacagc tcgctgcgtc gccccgcaag gcgcagttgt tgagcgtcag gttgggatca
     2521 accgcgccga tcgccttctt gacgcggatg tcatagtaat tagcttcgat gctgaacgag
     2581 ctcgcaaaac cgctctcgcg cgcccaggcc ggcgaataga cgccgccgaa cagcaggttg
     2641 cgcgactttt cgggcttgag gt
//
LOCUS       DASQVK010000243         3219 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_269127,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000243 DASQVK010000000
VERSION     DASQVK010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3219
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269127"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..466)
                     /locus_tag="VE567_05245"
     CDS             complement(<1..466)
                     /locus_tag="VE567_05245"
                     /inference="COORDINATES: protein motif:HMM:NF014661.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcaO-like family protein"
                     /protein_id="HYZ48283.1"
                     /translation="MWQAIRPWGRSVSVHQGKGLDAHSARIGAAMEAIECARAEAWEP
                     REAITASFRDLPEPERASRADDFAWTRGELGGDELLEWAVAEGLGDGKPFWVPELAVS
                     LNLCRAVPGPVERTSNGQGAGFDLAQASLKALCELIERDAFQAWSERSVLDRS"
     gene            complement(586..876)
                     /locus_tag="VE567_05250"
     CDS             complement(586..876)
                     /locus_tag="VE567_05250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48284.1"
                     /translation="MPKFDRIASLSYDSAPGAKQGGKMATPSGSAHYVIRDDKKRMIH
                     IVQPVVSLGLDDPTSEAEVRILQGYLDNRAYDVQAAPIIAVAFQTLATIGGR"
     gene            complement(928..1203)
                     /locus_tag="VE567_05255"
     CDS             complement(928..1203)
                     /locus_tag="VE567_05255"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007705531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HYZ48285.1"
                     /translation="MRAVRLLISGRVQGVGYRDWAQREAVSLGLAGWVRNLRDGRVEA
                     VAAGTAAAVAAFVERAKQGPWSARVDSVEVSVAEAPAGADFDVFPTA"
     gene            complement(1205..3025)
                     /gene="mutL"
                     /locus_tag="VE567_05260"
     CDS             complement(1205..3025)
                     /gene="mutL"
                     /locus_tag="VE567_05260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004212360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0032300 - mismatch repair complex
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HYZ48286.1"
                     /translation="MSIRRLPSHLINRIAAGEVVERPASALKELVENAIDAGASRIAV
                     RLRGGGIDLVEVTDDGCGMAPDEMRLALERHATSKLPDDAIEAVITLGFRGEALPSIA
                     SVARLVLESRVRGADGWALSVDNGELAGEGPAALPPGTRVRVEGLFERVPARRKFLRS
                     VRAEYAACLDAVKRLAMARPEIGFSLEHEGRTVLTVAPGDSAPARVAALTDRDLPENS
                     VGVDLVREGLRLGGVAGLPTFSRGVADHQYLFVNNRPVRDRLLAGAVRGAYADLLARD
                     RHPVVALFLELPSEQVDVNVHPAKTEVRFRDPALVRGLIVSGLRRALDEAGHASARPA
                     AVDVLAGWQSPQLSPSPAGDGSRVGSGFDFGSAGTIQSHPDASPGGEGLRYSLADRRS
                     FFTAPPQARAEPAYAPAPQQARYPLGVARGQVANTYIVAEAEDGLILVDQHAAHERLV
                     LERMKRAAANGGIARQALLLPEVVELDEPACERLEARAEELAGFGLELERFGPVAMLV
                     RATPAPLGQGDVHGLVRDLADELAAFDQALSLKEKLDQVAATMACHGSIRAGRALSVA
                     EMNALLREMEATPHSGQCNHGRPTWVKLARGDLEKLFGRK"
BASE COUNT          549 a         1172 c          975 g          523 t
ORIGIN      
        1 agctgcgatc gaggacggag cgctcgctcc acgcctgaaa cgcatcgcgc tcgatcagct
       61 cgcaaagagc tttcagcgag gcctgcgcca gatcgaatcc ggcgccttgt ccattgctcg
      121 tccgctcgac cgggccgggg acagcgcggc agagattcag cgacacggca agttccggaa
      181 cccaaaacgg tttgccgtcc ccaaggccct cggccaccgc ccactccagc aactcgtcgc
      241 cgcccagctc gccgcgcgtc cacgcaaaat cgtcggcgcg gctggcacgt tccggctcag
      301 gcaggtcgcg aaaactggcc gtgatcgcct cgcgaggctc ccacgcttcg gcgcgcgcgc
      361 actcgatcgc ctccattgcg gcaccgatcc gcgccgaatg cgcatcaagc cccttgccct
      421 ggtgcaccga gacggaccgg ccccagggcc tgatcgcctg ccacaccgga actccgagcg
      481 tatcgagccc ggtaatgtcg gcgaagcggg tgacgcccag tcgctgcgcc tcacctgcgg
      541 cggtcgcgag ctgccaatcc aggagcagga acgagacttg cgcgtctacc gcccgccgat
      601 cgtcgccagc gtctgaaacg ccacagcaat aatcggcgcg gcctgaacgt cgtacgcgcg
      661 gttatccaga tagccctgca atattcttac ttcagcttcg ctggtcggat cgtccaggcc
      721 gagagataca actggctgaa cgatgtgaat cattctcttc ttgtcatcgc gaatgacgta
      781 gtgtgcgctc cctgaaggcg tagccatctt acccccctgt ttagcaccgg gagcagaatc
      841 atagctcaaa ctggcgattc tgtcgaattt tggcacgcaa tttctttggg cgtgcacgct
      901 acccgcgcta ttcgccattt caaataccta ggccgtcggg aatacatcaa agtccgcacc
      961 cgccggcgcc tcggcgacag aaacttcgac gctgtcgacg cgcgccgacc aggggccttg
     1021 cttcgcccgc tcgacaaaag cggccactgc cgccgcggtc ccggcggcga cggcttcgac
     1081 ccgcccgtcg cgcagattcc gcacccagcc agcaagcccc agcgacaccg cctcgcgctg
     1141 cgcccagtcg cgatagccga cgccttgcac gcgccccgag atcagcagcc gcaccgcccg
     1201 catgtcactt ccgcccgaac aatttctcga ggtccccccg cgcgagcttc acccaggtcg
     1261 ggcggccgtg gttgcattgg ccgctgtgcg gggtcgcttc catttcgcgg agcagcgcat
     1321 tcatttcggc gaccgagagc gcgcggccgg cacggatgct gccgtggcag gccatggtcg
     1381 cggcgacctg gtcgagcttt tccttgaggc tgagcgcctg atcgaatgcg gcgagctcgt
     1441 cggcgagatc gcggaccagc ccatgaacgt cgccctgccc cagcggcgct ggcgttgccc
     1501 ggacgagcat cgcgaccggc ccgaagcgct cgagttccag cccgaagccg gcaagttcct
     1561 cggcgcgtgc ttccagccgc tcgcaagcgg gctcgtcgag ttcgaccact tcgggaagga
     1621 gcagcgcctg gcgcgcgatg cccccgtttg ccgccgcccg tttcatccgt tcgagcacca
     1681 gccgctcatg cgcggcatgc tggtccacca ggatcagccc atcctcggct tcggccacga
     1741 tataggtgtt cgccacttgc ccccgggcga cgccgagcgg gtagcgtgcc tgttgcggcg
     1801 ccggggcgta agccggctca gcccgagcct ggggcggagc cgtaaagaag gagcggcgat
     1861 cagcgaggct gtatctcagc ccctcccctc caggggaggc gtcggggtgg gactgaatcg
     1921 tcccggcgct accaaagtca aagccgctcc ccacccgtga cccgtcccct gcaggagacg
     1981 ggctaagctg cggagactgc caacctgcca gcacatccac cgccgccggc cgggcactcg
     2041 catgtcctgc ttcgtcgagc gcgcgcctga gtccgctgac gatcaggcca cgcaccagcg
     2101 ccgggtcgcg gaagcgcact tcggtcttgg cggggtgaac attgacgtcc acctgctcgg
     2161 agggaagctc gagaaacagc gccaccaccg gatgccggtc ccgggcgagc aaatcggcat
     2221 aggcgcctcg cacggcgcct gccaacaggc gatccctcac cgggcggttg ttgacgaaca
     2281 gatattggtg atcggcaacg ccgcggctga acgtcggcag ccctgcgacc ccgcccagcc
     2341 gcagcccctc gcgcaccaga tcgaccccga cgctattctc cggcaagtcg cggtcggtga
     2401 gcgcggccac ccgcgccggc gcgctgtcgc ccggtgccac cgtcagcacc gtgcggccct
     2461 catgctcaag gctgaagccg atttccggcc gcgccattgc gaggcgcttc acggcatcca
     2521 ggcacgcggc atattccgca cgcaccgagc gtaggaattt gcgccgcgcc ggcacgcgct
     2581 cgaacaaccc ctcgacgcgc acccgggtgc cgggcggaag cgcggccggt ccctcccccg
     2641 ccagctcgcc attgtcgacc gacagcgccc agccatccgc gccgcgcacg cggctttcga
     2701 gcaccagccg cgcgacgctg gcgatcgagg gcagcgcctc gccgcgaaaa cccaatgtta
     2761 tgactgcctc gatcgcatcg tccggcagtt tcgacgtggc gtggcgttcg agcgcgaggc
     2821 gcatttcgtc cggcgccatc ccgcagccat cgtcggtcac ttcgacgaga tcgatgccgc
     2881 cgccgcgcag gcgcaccgcg attcgcgacg cgccggcgtc gatcgcgttt tcgaccaatt
     2941 ccttcagcgc gctcgctggc ctttccacca cttcgcccgc tgcaatccgg ttgatgaggt
     3001 gcgaaggcag acggcgtatt gacattatgt gctgctctag cccaagcgac ctcgtcccgc
     3061 gacccggcgc tcacgaaaaa tcaagcgaaa tgtggttccg taggaaccgc gggcaggtat
     3121 atagccctac tctgtttcat agcgggacac acatgttctt atcgcgtttc ttcaaattca
     3181 tgtcccatga catggcgatc gacctcggca cggccaaca
//
LOCUS       DASQVK010000244         6753 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_332203,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000244 DASQVK010000000
VERSION     DASQVK010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6753
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332203"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..628
                     /locus_tag="VE567_05265"
     CDS             <1..628
                     /locus_tag="VE567_05265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYZ48287.1"
                     /translation="VLMNAATAEAQDLPEIVRREAATMRRQVDHHLARARAVGRRGLA
                     HSRAEVWSSLEAVERAVARLYPDVRIDIAGARDLSVHVERQDLDELLGNLIENAAKYG
                     GGSVFVTVRADVGFVEFLIEDDGKGIPEEERQRIFDRGARLDTSKPGTGLGLAIVRDV
                     AEIYGGSVALEESEDLGGLMVRLCLPAAAEEPPNGRSSAIRSTSARSR"
     gene            703..2751
                     /locus_tag="VE567_05270"
     CDS             703..2751
                     /locus_tag="VE567_05270"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13-type metalloendopeptidase"
                     /protein_id="HYZ48288.1"
                     /translation="MKARILIGAAMLALSVAAAPAVFAEVATVAKPQFGSFGFDAAGM
                     DRTTAPGDDFYKFANGKWDETTPIPADRSSWGGFGVLRDLSDQRTRGVIEQAAASKGA
                     PGSNAQKVGDFYASFMDEAAIEAKGLAPVKPELDAIAALKTPADLARWMGDANRSGVT
                     VPIDLEIEQDLKDNSKYAVYLNQGGLGLPDRDYYLDDSNPKFVEARTKYKAHVAAMLK
                     LAGIADADAKAERIFGLETKIARTHWTRAQSRQVEKLYNPVAATELATKMPGLDWSRY
                     LAAAGVSMPVLVVAQPSAVSGTAALIASEPMEVWKDYLTYHTLSSAAPLLPKAFVTED
                     FAFKGTTLAGTPQLKERWKRGVDLVNGGMGEAVGQLYVAKYFPPEAKAKAEQLVRNLI
                     AAMDVRLQKLEWMAPETKAKAREKLAAFTYKIGYPDKWRDYSKLEIRPGDAYGNALRA
                     TRFEYQRNLDKIGKPVDRTEWGMTPMTVNAYANPLMNEVVFPAAILQPPFFDPNADDA
                     INYGGIGAVIGHEISHHFDDQGRKFDKNGNLADWWTPQDVERFKAYTDRVVAQYGGYE
                     PLPGKHVNGELTLGENMADLAGVNVAYDAYKISLGGKPAPVIDGWTGDQRFFLGYAQV
                     WRSKYREPFALQLLTTDPHTLGNWRPYVVRNLDAWYTAFDVKPGSKYYLAPDQRIKVW
                     "
     gene            complement(2794..3435)
                     /locus_tag="VE567_05275"
     CDS             complement(2794..3435)
                     /locus_tag="VE567_05275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010337370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HYZ48289.1"
                     /translation="MTDRLTFYTNPMSRGAIVRWMLEEVGQPYETVLLDYATTMKAPE
                     YLAINPMGKVPAIKHGDTVVTECAAICAYLAETFPDAGLAPRTNAERGPYYRWLFFTA
                     GPVEAAVSDRVLGLEIPAERERMVGYGNYDRVVDLLDQFLSGTDYVTGDRFTAADVYL
                     GSHIMWGTQFGTLPKRPSFDAYLARLTSRPAAQRAQEIDHKATAEMQAQTEPA"
     gene            complement(3486..4349)
                     /locus_tag="VE567_05280"
     CDS             complement(3486..4349)
                     /locus_tag="VE567_05280"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HYZ48290.1"
                     /translation="MDRDIRQRAIELYDAYTHEGRDRRAFLREMTLLAGSAAAAEALI
                     AGIAASPAAAAIVPAADNRLKTRTERWESAPGRAMSAYVAEPAKAAARALVVVIHENR
                     GLNEHIRDVARRVALEGYEAVAVDLLAPVGGTPADEDKARQMIGALDLAAATRDAQSA
                     FARFGQGRKAGLVGFCWGGAMVDRVAVAGAPGLAAAVSYYGPAPDPSDAAKVSVPLVI
                     HLPGLDTRVAGTVQPFVAALKAAGKDVTLYEYPGANHAFNNDTSAERYNAEAAKLAWQ
                     RTMDFFKARLA"
     gene            complement(4360..6420)
                     /locus_tag="VE567_05285"
     CDS             complement(4360..6420)
                     /locus_tag="VE567_05285"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HYZ48291.1"
                     /translation="MVRCLAFLPLLALSLPALAQPVTEGASRAFQGRDLFGLEWASDP
                     QISPDGSQIAYVRRANDIMTDRARSTIWLVDTRTGAQSPLVAGPGAHMSPRWSPDGKR
                     LAYVSTAEGGAPQLFVRWMATGQTARITGLPDSPSALAWSPDGSRIAYLMRVAAEAPK
                     LGAAPAPKPEGADWAKPLEVITAVQYRTDEGGYSKPGFDHIFLVSADGGAPRQLTFGQ
                     IDDGGPLSWSPDGKTLYFSANHRKDWEREPLDSEIYALNVDSGALTALTDRRGPDAQP
                     VVSPDGRHVAWIGFEDKRLGYQNATLSVMDADGRNARVLTGSLDRTINQADWAGNGAL
                     IVQYDDRGLTKLARVTLDGRVTPLADDLAGGQVDRPYTGGDFSVARDGAIAFTSGSAQ
                     RPPDVALWRGGARRLTRLNEDLLGQKALGQVQKITAKAADGRMIDAWLVTPSTPAPGG
                     KYPLILEIHGGPFAAYGPHFSTDDQLYASAGYAVLSVNPRGSTSYGEEFANLIHHKYP
                     GDDYGDLMAAVDAAIATGTVDPNNLFVTGGSGGGVLTAWIVGKTDRFKAAATQKPVID
                     WASFALTADNPAFFSRYWFGSYPWEDYQSFWARSPLSLVGNVKTPTLVVVGSEDYRTP
                     VSEAEQYYAALQLRGVPTALVKVPGAAHGTIAARPSQAAGKASAIIAWFDRYRSKGSA
                     AAQQ"
BASE COUNT         1171 a         2226 c         2227 g         1129 t
ORIGIN      
        1 ggtgctgatg aacgccgcga ccgccgaagc ccaggacctc cccgagatcg tccgccgcga
       61 ggcggcgacg atgcgccggc aagtcgacca ccacctcgcc cgcgcccgcg ccgtcggacg
      121 tcgcggcctg gcgcacagcc gcgccgaagt ctggtcaagc ctggaagcgg tcgagcgcgc
      181 cgtggcgcgg ctctatcccg atgtcaggat cgacatcgcc ggcgcccgtg acctgtcggt
      241 ccatgtcgag cggcaggatc tggacgaact tctcggcaac cttatcgaga acgctgccaa
      301 atatggcggc ggcagcgtgt tcgtgacggt ccgcgccgat gtcggcttcg tcgaattcct
      361 gatcgaggac gatggaaaag gcattccgga agaagagcgc cagcgcatct tcgaccgcgg
      421 cgcgcggctc gacacgtcca agcctggaac cgggcttggg ctcgcgatcg tgcgcgacgt
      481 cgcagagatt tatggcggct cggtcgccct tgaggagagc gaggatcttg gcggcctgat
      541 ggtgcgcctg tgcctgcccg cggcggcaga ggagccgccc aacggccggt ccagcgctat
      601 tcgatcaaca tcggccagga gtcgatgaac gcccacagcg tccgattgcg ccgcttccct
      661 aagccgctaa tgttacgcat ctttttgttc cgggggattc ccatgaaagc tcgtatcctg
      721 attggcgcgg ccatgctcgc gctttccgtt gccgccgcac cggcggtctt tgccgaggtt
      781 gccaccgtcg ccaagccaca gttcggcagc ttcgggttcg acgcggccgg catggaccgc
      841 acgaccgcgc ccggcgacga tttctacaaa ttcgccaatg gaaaatggga cgagacgacg
      901 ccgatcccgg ccgaccgatc gagctggggc gggttcggcg ttctgcgcga cctatcggac
      961 cagcgcacgc gcggcgtgat cgagcaggcc gccgccagca agggcgcgcc cggcagcaac
     1021 gcccagaaag tcggtgattt ctacgcgagc ttcatggacg aagcggcgat cgaggcgaag
     1081 ggcctggccc cggtcaagcc cgagctcgac gcgatcgcgg cgctgaagac ccctgccgat
     1141 ctcgcacgct ggatgggcga cgcgaaccgc agcggcgtca ctgttccgat cgacctggaa
     1201 atcgaacagg atctcaagga caacagcaaa tacgcggtct atctcaacca aggcgggctg
     1261 gggctgcccg accgcgatta ttatctggac gacagcaacc cgaaattcgt cgaggcgcgc
     1321 accaagtaca aggcgcatgt cgcggctatg ctgaagctcg ccggcattgc cgatgccgat
     1381 gcgaaggccg agcgcatctt cggcctcgag accaagatcg cgcggacgca ctggacgcgc
     1441 gctcaatccc gccaggtgga gaagctctac aatccggtcg cggcgacgga gctcgcgacg
     1501 aagatgccgg gtctcgactg gtcgcgctat ctcgccgcgg ccggcgtctc gatgccggtg
     1561 ctggtcgtcg cgcagccgag cgcggtgagc ggcacggcgg cgctgatcgc ctccgagccg
     1621 atggaggtgt ggaaggacta tctcacctat cacactctct ccagcgccgc gccgttgctg
     1681 cccaaggcgt tcgtcacgga ggatttcgcg ttcaagggca cgacgctggc cggcacgccg
     1741 cagctcaagg agcgctggaa gcgcggcgtc gatctggtca atggcggcat gggcgaggcc
     1801 gtcggccagc tttacgtcgc caaatatttt ccgcccgaag ccaaggccaa ggcggagcag
     1861 ctggtccgca acctgatcgc ggcgatggac gtgcggctgc aaaagcttga atggatggcg
     1921 cccgagacca aggcgaaggc ccgcgagaag ctcgccgcct tcacttacaa gatcggctat
     1981 cccgacaagt ggcgcgatta ttcgaagctc gagatccggc ccggcgatgc ctatggcaat
     2041 gcgctcaggg caacgcggtt cgaatatcag cgcaatctcg acaagatcgg caagcccgtc
     2101 gaccggaccg agtggggcat gacgccgatg accgtcaatg cctatgccaa cccgctgatg
     2161 aacgaggtcg tgttcccggc ggcgatcctg cagcccccct tcttcgatcc caatgccgac
     2221 gacgcgatca actatggcgg catcggcgcg gtgatcgggc acgagatcag ccaccatttc
     2281 gatgatcagg gccgcaagtt cgacaagaac ggcaatctgg ccgactggtg gacgccgcag
     2341 gacgtcgagc ggttcaaggc ctatacggac cgcgtggttg ctcaatatgg cggctacgaa
     2401 ccattgcccg gcaagcatgt gaacggcgag ctgaccctcg gagagaacat ggccgatttg
     2461 gccggcgtga acgtcgctta tgacgcctat aaaatctcgc tgggcggcaa gccggcgccg
     2521 gtgatcgacg gctggaccgg cgaccagcgt ttcttcctcg gctatgcgca ggtgtggcgc
     2581 agcaagtatc gagagccgtt cgcgctgcag ttgctcacca ccgacccgca tacgctgggc
     2641 aattggcggc cctatgtcgt gcgcaacctc gacgcctggt acaccgcctt cgacgtgaag
     2701 ccgggctcca aatattatct ggcgcccgac cagcgcatca aggtctggta agccgatcga
     2761 cgcccctccc gtgcaaggga ggggctcagc tcctcaggcc ggttcggttt gcgcctgcat
     2821 ttcggccgtc gccttgtggt cgatctcctg ggcccgttgc gcggccggac ggctcgtcag
     2881 ccgggcgaga taggcatcga agctcgggcg cttcggcagc gtcccgaact gcgtacccca
     2941 catgatgtgc gagccgagat agacatcggc cgcagtgaac cggtcgccgg tcacatagtc
     3001 cgtgccggac aggaattgat cgagcagatc gacgacccgg tcataattgc catagccgac
     3061 catcctttcg cgctcggccg ggatctcgag gcccagcacc cgatcgctca cagccgcctc
     3121 gaccggaccg gcggtgaaga agagccagcg ataatagggc ccacgctccg cattggtccg
     3181 cggcgccagg cccgcgtctg gaaaggtctc cgccagatag gcgcagatcg cggcgcattc
     3241 ggtgacgaca gtgtcgccat gcttgatggc gggcaccttg cccatcggat tgatcgccag
     3301 atattccggc gctttcatcg tggtcgcgta atcgagcagc accgtctcat agggttgccc
     3361 gacctcttca agcatccagc gcacgatcgc gccgcgagac atggggttcg tatagaaggt
     3421 cagccgatcg gtcatctcac tctcccaaat cgaatcgcga ttcggaacgt atcaggaaca
     3481 ttggctcagg ccaatctggc cttgaagaaa tccatcgtcc gctgccaagc cagcttcgcg
     3541 gcttcggcat tgtagcgttc ggcggaggtg tcgttgttga aggcatggtt ggcgcccgga
     3601 tattcgtaga gcgtcacgtc cttccccgcc gccttcagcg ccgcgacgaa cggctgcacc
     3661 gtccccgcca cgcgcgtgtc gaggccgggc aggtggatca ccagcggcac acttaccttc
     3721 gccgcgtccg acgggtccgg cgcgggtccg taatagctga ccgccgcggc gagacccggc
     3781 gcgccggcga cggcgacccg gtcgaccatc gccccgcccc agcaaaagcc gaccagcccc
     3841 gctttgcgcc cttgcccaaa gcgggcgaac gccgattgtg catcgcgagt ggccgcagcg
     3901 aggtcgagcg cgccaatcat ctgccgcgcc ttgtcctcat cggcgggcgt gccgccaacg
     3961 ggggcgagca gatcgaccgc taccgcctca tagccttcga gcgcgacacg ccgggcgacg
     4021 tcgcggatat gctcgttcag cccgcgattc tcatggatca cgaccaccag cgcgcgtgcg
     4081 gcggccttgg cgggctccgc aacataggcg ctcatcgccc ggcccggcgc gctttcccag
     4141 cgctcggtac gagtcttgag cctgttgtcg gccgccggga cgatcgccgc ggcggccggc
     4201 gaagcggcta tgccggcaat cagcgcctcc gctgccgccg cgcttccggc aagcagcgtc
     4261 atctcgcgca ggaaggcccg gcggtcacgg ccttcatgcg tgtaggcgtc gtagagctcg
     4321 atcgcgcgct ggcgaatgtc ccggtccatg cctctcctcc tattgctgag cggctgcgct
     4381 tcccttgctg cgataacgat cgaaccaggc gatgatcgcc gaggccttgc ccgccgcctg
     4441 ggacggccga gccgcgatcg tgccgtgcgc cgcgcccggc actttcacca atgcggtcgg
     4501 cacgccgcgc agctggagcg ccgcataata ttgctcggcc tcgctgactg gcgtgcgata
     4561 gtcctccgag ccgaccacga cgagcgtcgg cgtcttcaca ttgcccacca gcgacagcgg
     4621 cgagcgcgcc cagaaggact ggtaatcctc ccaaggatag gagccgaacc agtagcgtga
     4681 aaagaaggcc ggattgtcgg cggtaagcgc gaagctcgcc cagtcgatca ccggcttctg
     4741 cgtcgccgcc gccttgaatc ggtcggtctt gccgacgatc caggccgtga gcacgccgcc
     4801 gcccgacccg ccggtgacga acaggttgtt cggatcgacc gtgccggtcg cgatcgccgc
     4861 gtcgactgcc gccatcaggt cgccatagtc gtcgcccgga tatttgtggt gaatgagatt
     4921 cgcgaattcc tcgccatagg acgtggagcc gcgcgggttg accgacagca cggcatagcc
     4981 ggccgaggca taaagctgat cgtcggtcga gaaatgcggg ccataagcgg caaaggggcc
     5041 gccatggatt tcgaggatca gcggatattt gccgccggga gccggcgtgg acggagtgac
     5101 cagccacgcg tcgatcatgc gcccatccgc ggctttcgcc gtgatcttct gcacctggcc
     5161 gagcgctttc tgcccgagca gatcctcgtt cagccgggtc agcctgcgcg cgccgccgcg
     5221 ccagagcgcg acgtccggcg gccgctgcgc gctgccgctg gtgaaggcga ttgcgccgtc
     5281 acgggcgacg ctgaagtcgc cgcccgtata aggccgatcc acctggcccc cggcgagatc
     5341 atcggccagc ggggtcacac gcccatcgag cgtcacccgc gcgagcttcg tcaggccgcg
     5401 atcgtcatac tggacaatca gcgccccgtt gcccgcccaa tcggcctgat tgatggtgcg
     5461 atcgaggctg ccggtcagca cgcgcgcgtt gcggccgtcc gcgtccatca ccgagagagt
     5521 cgcgttctga tagccgagcc ttttgtcctc gaagccgatc caggcgacat ggcggccgtc
     5581 aggcgagacg accggctggg cgtccgggcc gcggcggtcg gtcagtgcgg tcagcgctcc
     5641 gctgtcgacg ttcagcgcat agatttcgct gtcgaggggc tcgcgctccc aatccttgcg
     5701 gtgattggcg ctgaaataga gcgtcttgcc gtcgggcgac cagctcaagg gtccgccatc
     5761 gtcgatctgg ccgaaagtga gctggcgcgg cgcgccgcca tcggccgaga cgaggaagat
     5821 atggtcgaag cccggcttgc tatagccgcc ctcgtcggtc cggtactgga ccgcagtgat
     5881 gacttcgagc ggcttggccc aatctgcgcc ttcgggcttg ggcgcgggtg cggcaccgag
     5941 cttcggcgct tcggccgcca cgcgcatcag ataggcgatg cggctgccgt ccggcgacca
     6001 ggcgagcgcg ctcgggctgt cgggcaggcc ggtgatccgc gccgtctggc cggtcgccat
     6061 ccagcggacg aaaagctgcg gcgcgccgcc ttcggcggtc gagacataag cgaggcgctt
     6121 gccgtcgggc gaccagcgcg ggctcatatg cgccccgggg ccggcgacca acggcgattg
     6181 tgcgccggtg cgcgtatcga cgagccagat ggttgagcgc gcgcgatccg tcatgatgtc
     6241 gttcgcgcgc cgcacatagg cgatctggct gccgtccggg ctgatctggg gatcgcttgc
     6301 ccattcgagc ccgaacaggt cgcggccttg aaatgcccgg ctggcgccct cggtgacggg
     6361 ttgggcgaga gcgggaagcg aaagcgcgag cagcggcaga aatgccagac aacggaccat
     6421 ggacggcctc tccttgtgtt gggaaccggc actctgcccg ttttgccttt gcgcgcaagc
     6481 accagcgccg atgccggcgg ggcttaagtt cacaaacttc ttagggtgag ccgccttttt
     6541 cgtgaactta ggcgggattc tcacttctgc tcaaaggctt agtccacaat ggtgaccggt
     6601 aagccgtagt gaaagtgcga cgaatggtga ccgcatgcag gtgtccgctc ggcagggaat
     6661 gggcaagcga gactggcacg gccggaggaa tgtaggacag cggtttcgtc gaacggcggc
     6721 cttggctcag gcgtcgccgt ccaggtcccg cgc
//
LOCUS       DASQVK010000245         3602 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_111205,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000245 DASQVK010000000
VERSION     DASQVK010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3602
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111205"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            129..671
                     /locus_tag="VE567_05290"
     CDS             129..671
                     /locus_tag="VE567_05290"
                     /inference="COORDINATES: protein motif:HMM:NF019428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE family protein"
                     /protein_id="HYZ48292.1"
                     /translation="MAEFAVLAPTMLLLIMGSMDLAYRGFVTSVLEGEMQKAARDSGL
                     EDQNPDKLATIEAKVKTQVGRVVKNASFGQLRKSYTSYLNAKPERFTDSNNNGQRDAG
                     ECFDDVNANGQWDPDPGRDGQGGANDVTVYSMTLTYPRLFPMYRMLGWPQNEVITART
                     YLKNQPYKTQTAPVVNTICT"
     gene            662..1381
                     /locus_tag="VE567_05295"
     CDS             662..1381
                     /locus_tag="VE567_05295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48293.1"
                     /translation="MHLTRTKAAPAIRLLALLRENRSGVALIEFAYSLPAVMGMGMYG
                     IETANLAQVHLRVSQTALMLADNASRAGVDAAGGTIQQLREIDVNDVLQGSRLQSQSI
                     NLPDNGRITLSSLETNSSGGQWIHWQRCLGKKSGAGWDSSYGKEGDGKTGTSFVGMGR
                     AGAEVKAPPGEAVMFVEVNYQYKPLFGLATALIGSPAVKYTASYLVRDKRDLSGNNGT
                     GIYDPSPSVGAAKMTCDKYTS"
     gene            complement(1390..2793)
                     /locus_tag="VE567_05300"
     CDS             complement(1390..2793)
                     /locus_tag="VE567_05300"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019052563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004739 - pyruvate dehydrogenase
                     (acetyl-transferring) activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex E1 component
                     subunit beta"
                     /protein_id="HYZ48294.1"
                     /translation="MAIDLKMPALSPTMEEGTLAKWLVKAGDTVKSGDILAEIETDKA
                     TMEFEAVDEGTIAEILVPEGTDGVKVGTVIARIAGDGEDAAAPAPAPAAAPAPVEPAD
                     QKAEPTPEPKQVETGARKLFEAATHDATVGEAEVPAGTEMLRQTVREALRDAMAEEMR
                     KDERVFVMGEEVAEYQGAYKVTQGLLDEFGPKRVIDTPITEYGFAGVGTGAAMGGLKP
                     IVEFMTFNFAMQAIDHIINSAAKTNYMSGGQMRCPVVFRGPNGAASRVAAQHSQNYGP
                     WYASVPGLVVIAPYDAADAKGLLKAAIRSEDPVVFLENELLYGRSFEVPRLDDFVLPI
                     GKARIMKPGKDVTLVSYSIGVGVALEAAEQLAGEGIDAEVIDLRTLRPLDKATVLKSL
                     AKTNRLVVVEEGWPVCSIASELAAIAMEDGFDDLDAPVLRVTNEDVPLPYAANLEKAA
                     LIDAARVVAAAKKVCYR"
     gene            complement(2793..>3602)
                     /gene="pdhA"
                     /locus_tag="VE567_05305"
     CDS             complement(2793..>3602)
                     /gene="pdhA"
                     /locus_tag="VE567_05305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007683265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045250 - cytosolic pyruvate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0004739 - pyruvate dehydrogenase
                     (acetyl-transferring) activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring) E1
                     component subunit alpha"
                     /protein_id="HYZ48295.1"
                     /translation="LKGGHDSVITGYRDHGHMLAYGIDPKLIMAELTGREAGISRGKG
                     GSMHMFSVEHRFYGGHGIVGAQVSLGTGLAFKHKYAEDGGLCMAYFGDGAANQGQVYE
                     SFNMAELWKLPIIYVIENNQYAMGTSVNRSSAEDQLYRRGESFRIPGVQVDGMDVLAC
                     RGAGEMAAEWVRSGKGPIILEMKTYRYRGHSMSDPAKYRSREEVQSVREKSDPIDHAG
                     RELESLGVNEAQLKDIDKDIRRIVGEAADFAESSPEPNPQELYTDVLVETY"
BASE COUNT          645 a         1191 c         1104 g          662 t
ORIGIN      
        1 gcctcggatg caaccgcgct gcaaaacgcg ttcaaggaga tcgcaggcaa gatcgctgag
       61 ctgaggatct cgaaatgagc cggccctctc tattcaagcg gatcggcgga gatgcgcggg
      121 gctcgacgat ggccgagttc gcggtgctgg cgcccaccat gctgcttctg atcatgggat
      181 cgatggacct cgcctatcgc ggcttcgtca cctcagttct ggaaggcgag atgcagaagg
      241 ccgcgcgcga ctccggcctg gaagatcaga acccggacaa gctcgccacg attgaggcca
      301 aagtaaaaac ccaggtcggg cgggtcgtga aaaacgccag cttcggccaa ttacgcaaga
      361 gctataccag ctatctgaac gcgaagcccg agcggttcac ggacagcaac aacaacggcc
      421 agcgcgatgc cggcgaatgc tttgatgacg taaacgcgaa cggccagtgg gacccggatc
      481 ccggccgcga cggtcaaggc ggcgcgaacg acgtgaccgt ctattcgatg acgctcacct
      541 acccgcgcct gttcccgatg taccgaatgc tgggctggcc tcaaaacgag gtgattactg
      601 cgcgcaccta tttgaagaac caaccctaca agacccagac tgcccctgtg gtgaacacga
      661 tatgcacctg acccgcacca aggccgcacc cgctattcgc ctgctggcgc tgctgcgcga
      721 aaaccgcagc ggcgtagcgc tgatcgagtt cgcctattcc ctcccggccg tgatgggcat
      781 gggaatgtac gggatcgaga ccgccaattt ggcgcaagtg catttgcgcg tcagccagac
      841 cgcgttgatg ctcgccgaca acgcgtctcg tgccggcgtc gacgcagcgg gcggtacgat
      901 ccagcaactc cgggagatcg acgtcaacga tgtgctgcag ggctcgcggc tgcagtcgca
      961 aagcattaat ttgccggaca atggccgcat caccctgtcc agcctggaaa ccaattcatc
     1021 aggcggccag tggatccatt ggcagcgctg cctcggcaag aaaagcggcg ccggctggga
     1081 ctcgagctat ggcaaagagg gtgacggcaa gaccggcact tcgttcgtcg gcatgggacg
     1141 ggcgggagcg gaagtaaaag ccccacccgg ggaggcggtc atgtttgtag aggtcaacta
     1201 tcaatacaag ccgttgttcg gcctcgcgac ggcgctcatc ggatcgcccg ccgtcaaata
     1261 tacggcgtct tacctcgtgc gcgataaacg cgatctgtcc ggcaacaacg ggactgggat
     1321 ctacgatccc tcgccctccg tcggcgccgc gaagatgacc tgcgacaaat acacgagctg
     1381 agcccgggct cagcgatagc agaccttctt cgccgccgcg acgacgcggg ccgcgtcgat
     1441 caatgccgcc ttttcgaggt tcgccgcata gggaagcggc acgtcctcgt tggttacgcg
     1501 cagcaccggc gcgtcgaggt cgtcgaagcc atcctccatc gcgatcgccg cgagctcgct
     1561 cgcgatcgag cagaccggcc agccttcctc gaccacgacc aggcggttgg tcttggcgag
     1621 gctcttcaac accgtcgcct tgtcgagagg gcggagcgtg cgcaggtcga tcacttcggc
     1681 gtcgatcccc tcgcccgcca gctgctcggc ggcttcgagc gcgacgccca ccccgatcga
     1741 atagctgacc agggtcacgt ccttgcccgg cttcatgatc cgcgccttgc cgatcggcag
     1801 cacgaaatcg tcgagcctcg gcacctcgaa gctgcggccg taaagcagtt cgttctcgag
     1861 gaacacgacc gggtcttcgc tgcggatcgc tgcctttagc agccccttcg cgtccgccgc
     1921 gtcgtagggc gcgattacca ccagcccggg gacactggcg taccaggggc cataattctg
     1981 gctgtgctgc gcggcgacgc ggctggcggc gccgttaggg ccgcggaaca cgaccgggca
     2041 gcgcatctgc ccgcccgaca tatagttggt cttagccgcc gagttgatga tgtgatcgat
     2101 cgcctgcatc gcgaagttga acgtcatgaa ctcgacgatc ggcttcagcc cgcccatcgc
     2161 cgcgcccgtg ccgacgccag caaagccata ttccgtgatc ggcgtgtcga tcacgcgctt
     2221 cgggccgaac tcgtcgagca ggccctgcgt gactttgtag gcgccttgat attcggcgac
     2281 ttcctcgccc atcacgaaaa cgcgctcatc cttgcgcatc tcctcagcca tcgcgtcgcg
     2341 cagcgcctcg cggacggtct ggcggagcat ctcggtgccg gccgggacct cggcctcgcc
     2401 gaccgtcgcg tcatgggtcg ccgcctcgaa cagcttgcgg gcgccggtct ccacctgttt
     2461 cggctccggc gttggctcgg ccttctgatc cgccggctcc accggagcgg gcgcggcagc
     2521 cggagcgggc gccggggccg ccgcgtcctc gccatcgccg gcgatccgcg cgatcacagt
     2581 cccgaccttc actccatcag tgccttcggg gacgagaatt tcggcgatcg tgccttcatc
     2641 gaccgcctcg aactccatcg tcgccttgtc ggtctcgatt tcggcaagaa tgtcgccgga
     2701 ttttaccgtg tcgccggcct tgaccagcca tttggcgagc gtgccctctt ccatcgtcgg
     2761 ggagagggcc ggcattttca gatcgatcgc catcaatagg tttccaccag tacgtcggta
     2821 tagagttcct gcgggttcgg ctcgggcgag ctttcggcaa agtcggccgc ttcgccgacg
     2881 atccgtcgaa tgtctttgtc gatgtccttc agctgcgcct cgttgacgcc cagggattcg
     2941 agctcgcgcc cggcatggtc gatcgggtcg gacttttcgc gcaccgactg gacttcctcg
     3001 cggctgcgat acttggccgg gtcggacatc gaatggccgc gatagcgata ggtcttcatc
     3061 tcgaggatga ttggtccctt gccgctgcgc acccattcgg cagccatctc gccggcgccg
     3121 cggcaggcga gcacgtccat gccgtccacc tggacgcccg ggatgcggaa gctctcgccg
     3181 cggcggtaga gctggtcctc ggcggacgag cgattgacgc tggtgcccat cgcgtactgg
     3241 ttgttctcga tcacatagat gatcgggagc ttccagagct cggccatgtt gaagctttca
     3301 tagacttggc cctggttggc cgcgccatcg ccgaaatagg ccatgcacag cccgccatcc
     3361 tcggcatatt tatgcttgaa agcgagaccc gtaccgaggc tgacctgcgc gcccacaatg
     3421 ccgtggccgc cataaaagcg atgctcgacc gagaacatgt gcatcgagcc gcccttgccg
     3481 cgcgaaatac ccgcctcgcg cccggtgagc tccgccatga tcagtttcgg gtcgatgccg
     3541 taagccagca tatggccgtg atcgcgatag ccggtgatca cgctgtcgtg cccccccttc
     3601 ag
//
LOCUS       DASQVK010000246         2448 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_205815,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000246 DASQVK010000000
VERSION     DASQVK010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2448)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2448)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2448
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205815"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..974
                     /locus_tag="VE567_05310"
     CDS             <1..974
                     /locus_tag="VE567_05310"
                     /inference="COORDINATES: protein motif:HMM:NF023828.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3667 domain-containing protein"
                     /protein_id="HYZ48296.1"
                     /translation="ERHDEAHGLCLNCGTALTGDYCHRCGQPAHIHRSLSAIWHDIAH
                     GALHFEGKIWSTLPLLLFRPGELTRRFIHGERARFVSPMALFLFSVFLMFATFSAIGA
                     HLEVPDETPPSATAQAAARQKIPQVLAQVAQLKAARASVAPNEREALDDRIERASDKL
                     ETLRDIASWKPGRFANVHTGWKQLDKAIAKASKNPNLMLYKVQSSAYKFSWALIPLSV
                     PFLWLLYAWRPQFKAYDHAVFVTYSLSFMSMLVIALTLLGKAGVPNDAVSLAAILIPP
                     VHIYRQLRGAYCTRRRWAIARTIALVIFASFTLFVFGLLLLALGAFG"
     gene            1071..1472
                     /locus_tag="VE567_05315"
     CDS             1071..1472
                     /locus_tag="VE567_05315"
                     /inference="COORDINATES: protein motif:HMM:NF015935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="JAB domain-containing protein"
                     /protein_id="HYZ48297.1"
                     /translation="MHDGQSRRRRIIDSLQAARELFAPAFARARDERLYIAHLDSSRR
                     LMGLRIRYAQSDSMLDFPVREIVADAIALQSAGLVLAHNHPSGDPTPTAADIEATRGL
                     VQVGRPLGLAVRDHLVFGRGGFVSFRERGLL"
     gene            complement(1469..2179)
                     /locus_tag="VE567_05320"
     CDS             complement(1469..2179)
                     /locus_tag="VE567_05320"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010183308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYZ48298.1"
                     /translation="MLFLLLALAACQAPAQRDEKARPDRRSEFPKADRPVAQIVSSRW
                     SDEESRDRAREARDVMDRAGITPGMTVADIGAGEGYYTIRLATRVGKNGRVLAQDIVP
                     RVRDALAERVNRERLDNVSVKLGEPADPKLPAGSFDRVFMVHMYHEIAEPYAFLWNLR
                     PAVKPGGQVIVVDADRSPEEHGTPPALLRCEFGAVGYNLVRIEPMPQAGGYFAAFEPK
                     GPRPEPRAIKPCSLGSHS"
     gene            complement(2206..>2448)
                     /gene="prfB"
                     /locus_tag="VE567_05325"
     CDS             complement(2206..>2448)
                     /gene="prfB"
                     /locus_tag="VE567_05325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515906.1"
                     /note="recognizes the termination signals UGA and UAA
                     during protein translation a specificity which is
                     dependent on amino acid residues residing in loops of the
                     L-shaped tRNA-like molecule of RF2; in some organisms
                     control of PrfB protein levels is maintained through a +1
                     ribosomal frameshifting mechanism; this protein is similar
                     to release factor 1; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HYZ48299.1"
                     /translation="LELQKREAEANVANASKTDIGWGHQIRSYVLQPYQLVKDLRTGV
                     TSTAPGDVLDGDLDRFMAAALSQRVTGEKVEVEDVE"
BASE COUNT          383 a          811 c          795 g          459 t
ORIGIN      
        1 gcgagcggca cgacgaagcc catggcctct gcctcaattg cgggacggcg ctgaccggcg
       61 attattgcca ccgttgcggc caaccggcgc atatccaccg gtcgctctcc gcgatctggc
      121 acgacatcgc ccatggcgcg ctccatttcg aaggcaagat ctggagcacg ctgccgctgc
      181 ttttgttccg gcccggcgag ctgacgcggc gcttcattca tggcgagcgc gcgcggttcg
      241 tctcgccgat ggcgctgttc ctgttctccg tcttccttat gttcgcgacc ttcagcgcga
      301 tcggcgcgca tctggaagtg ccggacgaaa cgccgccatc agcgacggcg caagcggccg
      361 cgcgtcagaa aatccctcag gtgctggcac aagtcgccca gttgaaagcg gcgcgagcga
      421 gcgtagctcc gaacgagcgc gaagcgcttg acgatcggat cgagcgggcg agcgacaagc
      481 tggaaacgct gcgggacatc gccagctgga agccgggccg cttcgcgaac gtccataccg
      541 ggtggaagca gctggacaaa gcgatcgcca aggcgagcaa aaaccccaat ttgatgctct
      601 acaaggttca gtccagcgcc tataaattct cgtgggcgct gatcccgctg tcggtgccat
      661 tcctatggct gctctatgcg tggcggccgc agttcaaggc ttatgaccac gcggttttcg
      721 tcacctattc gctgtcgttc atgtcgatgc tggtgattgc gctaaccttg ctgggcaagg
      781 cgggcgtgcc gaatgatgcg gtcagcctgg cggcgatcct gatcccgccg gtacatatct
      841 atcggcaatt gcgcggcgcc tattgcacgc gccggcgctg ggcgattgcg cggaccatcg
      901 cgctcgtcat cttcgccagc ttcacactct tcgtgttcgg ccttctgctg ctggcgctcg
      961 gcgccttcgg ctgagattgc gccgaaacgg agtcggttta cgcggcgccg gtccgtttcg
     1021 gagctttgcc cggcttacga gtccagcctc gccatgcgta gtcagcgccc atgcacgacg
     1081 ggcagagccg tcgccggcgc atcatcgaca gtctgcaggc ggcgcgggag ttgtttgccc
     1141 ccgcctttgc gcgggcgcgg gacgaacggc tgtatatcgc tcatctcgac tcaagccggc
     1201 ggctgatggg cctgcgcatt cgctatgccc agagcgattc catgctcgat tttcctgtgc
     1261 gtgagatcgt cgccgacgcg attgcgctgc agagcgcggg cctggttctg gcgcacaatc
     1321 atccgagcgg cgacccgacg cccaccgccg cggatatcga ggcgacgcgc ggcctggtgc
     1381 aggtcggccg gccgctaggg ctcgccgtgc gcgaccatct cgtgttcggc cgtggcgggt
     1441 ttgtgtcgtt tcgggagcgc gggctgcttt aggagtgaga ccctagcgag cagggcttga
     1501 tcgcgcgcgg ctccggccgg gggcccttgg gctcgaaagc ggcaaaatac ccgccggcct
     1561 gcggcatcgg ctctatgcga acgaggttat agccgacggc gccgaattcg cagcggagca
     1621 gcgccggtgg cgtcccatgc tcctcgggcg accggtcggc gtcgaccacg atcacttgcc
     1681 caccgggctt cacggccggc cgcaagttcc acagaaacgc atatggctcg gcgatctcat
     1741 gatacatatg gaccatgaac acccggtcga agctgcccgc cggcagcttg gggtcggccg
     1801 gttcgccaag cttcacggac acattgtcga ggcgttcgcg gttgacgcgc tcggccagcg
     1861 cgtcgcggac gcgaggaacg atgtcttggg cgagcacgcg accgttcttg ccgacccgcg
     1921 tggcaagtct gatcgtgtaa tagccctcgc cggcgccgat atccgccacc gtcattcccg
     1981 gcgtgatgcc ggcccgatcc atcacatcac gcgcctcgcg cgcgcggtcg cgcgattcct
     2041 cgtccgacca gcggctggat acgatctgcg caacggggcg atccgccttg gggaactcgc
     2101 tcctgcgatc aggcctcgcc ttctcgtcgc gctgcgccgg cgcctggcag gcggcgagcg
     2161 ccagcagcag aaagagcaag cttcgcttcc cccggcgcgt gatgatcatt ccacgtcctc
     2221 gacctcgacc ttttcgcccg tcacgcgctg gcttagcgcg gcagccatga agcggtcgag
     2281 atcgccgtcg agcacgtcgc cgggggccgt cgaggtgacg ccggtgcgca gatccttcac
     2341 cagctgatag ggctggagca cataagagcg gatctggtgg ccccagccga tatcggtctt
     2401 gctggcgttg gcgacattcg cctccgcttc gcgcttctgc agctccag
//
LOCUS       DASQVK010000247         3034 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_47484, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000247 DASQVK010000000
VERSION     DASQVK010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3034
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47484"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1569)
                     /locus_tag="VE567_05330"
     CDS             complement(<1..1569)
                     /locus_tag="VE567_05330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYZ48300.1"
                     /translation="MIGRSTIFAGLLVGTAAPALAQEAAAPAPTPAPQPSAAAAPASD
                     EMGDEEEIVVVGQRERGAVIGDIKPEVQLSPADIRSYGVSSVAELLTELAPQISTTRG
                     RDRGASVVLLNGLKISGFNEIRDLPTEAIQRVDILPEEVALKYGYTADQKVVNIVLRR
                     RFRATTAELGDRVATDGGANRPEAEASLLRIMPDGRFNLAGQYTRTEPLLESDRDILP
                     GSRFDQRPFRTLIPSSDQASVNAIYARGIAEGVSATINGRLQYNDSRALLGLSADGTG
                     PLITQNNESWTSRLGTTINGALSGWQWTFTGGYDRVETDTRTSVTADKAHSLSNNLGG
                     DFTINGQPLKLPAGPVSTTLRLNASTADFDSRTMRAGVLRAGSVHRDIGGGQVNLDLP
                     IASRERDVLAFLGTLSLNGNAEVQRLSDFGTLTSYGFGTTWTPVRPLNIVASYSNEDE
                     APTAQQLGNPVIVTPGVRVFDLVRNQSAIVTQITGGNPNLQSDERRVFKLGATLRPFG
                     DQDLSIIATYTSART"
     gene            complement(1668..2120)
                     /locus_tag="VE567_05335"
     CDS             complement(1668..2120)
                     /locus_tag="VE567_05335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019051589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1178 family protein"
                     /protein_id="HYZ48301.1"
                     /translation="MIVFDLKCGGGHVFEAWFGSSHDYEDQRARGMIACPICGDSKIG
                     KAVMAPRLGSGVVEDAPQAPVPVASTPGPEMKALLTAMAQLQAKMLERSEWVGRRFAD
                     EARAIHLGDTGQRAIHGQATPAEAAALADEGIDVMPLPFPVTPPDQRN"
     gene            complement(2117..2941)
                     /locus_tag="VE567_05340"
     CDS             complement(2117..2941)
                     /locus_tag="VE567_05340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007683720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HYZ48302.1"
                     /translation="MKAAILQMQSGIDPAANARSLVKAVADARAAGADMLFTPEMSNL
                     LDSDRARSEAVVRTEDEDPTLAAVRDAAREMSLWVHLGSLALRGEGGQRLNRGFLIDA
                     QGAIRARYDKIHLFDVDLPTGESWRESAVYARGARAVAADTPWGRLGLSICYDVRFPD
                     LYRALTGAGASILAVPAAFTVPTGRAHWQVLLRARAIEAGVFVVAAAQAGRHEDGRET
                     YGHSLAIGPWGDVLLDMGAEPGLGFVDLDLAQVEAVRARVPALHHRREIPPVEVAQ"
BASE COUNT          504 a          990 c         1032 g          508 t
ORIGIN      
        1 cgtccgggcg ctggtgtagg tggcgataat actcagatcc tggtcgccga acggacgcaa
       61 tgtcgcgcca agcttgaaca cgcggcgctc gtccgactgg agattgggat tcccgccggt
      121 gatttgcgtg acaatggcgg actggttgcg gaccagatcg aagacgcgca cgccgggcgt
      181 aacaatcacc ggattgccga gctgctgcgc ggtcggcgct tcgtcctcgt tcgaatatga
      241 ggcgacgata ttgagcgggc gcaccggggt ccaggtcgtg ccgaagccgt aggacgtcag
      301 cgtaccgaaa tcgctcaaac gctgcacctc ggcattgccg ttcagcgata gcgtccccag
      361 gaaggcgagc acatcgcgct cgcggctggc gatcggcagg tcgaggttaa cttgtccccc
      421 gccgatgtcg cgatgaacgg aacctgcccg cagaacgccg gcacgcatcg tgcggctgtc
      481 gaaatcggcg gtcgaggcgt tgagccgcaa agtagtcgag acgggaccgg cgggaagctt
      541 gagcggctgg ccgttgatcg tgaaatcgcc gccgagattg ttcgacagcg aatgcgcctt
      601 gtcggccgtg acgctggtgc gggtatcggt ctccactcgg tcgtagccgc cggtgaaagt
      661 ccattgccag ccggatagtg cgccgttgat cgtggtcccg agacggctgg tccagctttc
      721 gttgttctgc gtgatcagcg gccccgtccc gtccgcggag agccctagca gcgcgcggct
      781 atcgttatat tgcaagcggc cgttgatcgt cgccgatacg ccctcggcga tgccgcgcgc
      841 atagatggcg ttgaccgatg cctgatccga tgagggaatg agggtgcgga acggccgctg
      901 gtcgaagcgg ctgccgggca ggatgtcgcg atcgctctcg agcagcggtt cagtgcgcgt
      961 atattggccg gcgaggttga aacggccgtc aggcatgatc cggagcagac tcgcttcggc
     1021 ctccggccgg ttggcgccgc catcggtggc gacgcggtcg cccagctcag ccgtcgtcgc
     1081 ccggaagcgc cgccggagca cgatattcac caccttctgg tccgcggtat agccatattt
     1141 gagcgccact tcctcgggca gaatatcgac gcgctggatc gcctcggtgg ggaggtcccg
     1201 aatctcgttg aaacccgaga ttttgaggcc gttcagcagc acgaccgagg ctccgcggtc
     1261 gcgcccgcgg gtcgtgctga tctggggcgc gagttcggtc agcagctcgg ccaccgagct
     1321 cacaccatag gagcgaatgt cagcggggct gagctgcact tcgggcttga tgtcgccgat
     1381 caccgcgccc cgctcgcgct gaccgacgac gacgatctct tcctcgtccc ccatttcatc
     1441 agacgctggt gcggctgcgg cggacggttg gggtgcgggc gttggagctg gagcagcagc
     1501 ttcctgtgca agcgccggag ccgcggtgcc gaccagcagt ccggcgaaaa tagtggagcg
     1561 cccgatcatc tgtcctccct ttgtcgcgac aacgccggcg gcgtggacga gacaagctga
     1621 atggaggctt gcaacccgta acgatacaag cggttgcgcc gccgcgctta attgcgctga
     1681 tcgggcggcg ttacggggaa aggcagcggc atcacgtcga tgccttcgtc ggccagcgcg
     1741 gcggcctcgg caggggtcgc ctgcccatga atcgcgcgct ggccggtatc gccgagatgg
     1801 attgcgcgtg cttcatcggc aaagcgccgg ccgacccatt cagatctctc cagcatcttc
     1861 gcctggagct gcgccattgc ggtcagcaga gccttcattt cgggccccgg cgtggaggcg
     1921 accggcaccg gggcctgcgg cgcgtcttcg acaacgccgc tgcccagcct cggcgccata
     1981 acggccttac cgatcttgct gtcgccgcag atcgggcagg cgatcatgcc ccgtgcgcgc
     2041 tggtcctcat agtcgtggct ggagccgaac cacgcttcga acacatggcc gccgccgcat
     2101 ttgaggtcga acacgatcat tgcgcgacct cgaccggcgg gatttcgcgg cgatggtgaa
     2161 gagctggaac gcgcgcgcgc accgcttcca cctgcgcaag gtcgagatcg acgaagccga
     2221 gccccggctc cgcgcccatg tcgagtagca catcccccca agggccgatc gcgagcgaat
     2281 ggccatatgt ttcacgacca tcctcatgcc gcccggcctg ggcagccgcg acgacgaaca
     2341 cgccggcttc gatcgcgcgg gcgcgcagca gcacctgcca atgcgcgcgg ccggtcggca
     2401 ccgtgaaagc ggcgggcacc gccaggatcg acgcgccggc cccggtcaac gcccgataca
     2461 ggtcggggaa gcggacatca tagcaaatgc tgaggccgag ccgcccccaa ggggtgtcgg
     2521 ccgcaaccgc ccgcgccccg cgggcataga ccgccgactc gcgccagctc tccccggtcg
     2581 gcaagtcgac atcgaacaag tggatcttgt catagcgcgc gcgaatcgcg ccttgggcat
     2641 cgatcaggaa cccgcgattg aggcgctggc cgccctcgcc ccgcaaagcc agcgaaccga
     2701 gatggaccca gaggctcatc tcgcgcgccg catcgcggac agcggcgagc gtcgggtctt
     2761 cgtcctccgt gcgcaccacc gcctcggatc gcgcgcggtc gctatcgagc aggttggaca
     2821 tttcgggcgt gaacagcatg tccgcgccgg ccgcgcgggc atcggccaca gccttgacga
     2881 gcgagcgggc gttggcggcc gggtcgatgc ccgactgcat ctgtaggata gcggctttca
     2941 tcttggccgt caggcggcgt tcagcagggg atcgaggcca tcccgggcgt cgagtgcggc
     3001 gagatcgtct gagccgccga tgtgccggcc gtcg
//
LOCUS       DASQVK010000248         2391 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_205944,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000248 DASQVK010000000
VERSION     DASQVK010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2391)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2391
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205944"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..201
                     /locus_tag="VE567_05345"
     CDS             <1..201
                     /locus_tag="VE567_05345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48303.1"
                     /translation="IVDEAAKPPARDTLLWYRLACGLPRALPDEAVADLDGAAAEAAR
                     ADYGYVLEQLGPCTRNRAIRTS"
     gene            complement(188..589)
                     /locus_tag="VE567_05350"
     CDS             complement(188..589)
                     /locus_tag="VE567_05350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HYZ48304.1"
                     /translation="MITPPRIDGLVPDSLAPRSFRIFLQDFDLPVDIGFHDFEVGTPQ
                     RLLVSVEVWVEPDAFASEDSAAAAWNYDFLRSEIRRTTEGRRFNLQETLAREIYTLIA
                     ARQGVTGLRVSTRKPDIYPDCAGVGVEISSF"
     gene            complement(638..>2391)
                     /locus_tag="VE567_05355"
     CDS             complement(638..>2391)
                     /locus_tag="VE567_05355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013040015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HYZ48305.1"
                     /translation="DGTVSPKGGFVSFVRDQNLVVLDLGSGKERALTRDGGGTLSWGV
                     AEFVAQEEMHRSRGHWWSPDDRRITVARVDESPVGVVTRAAIGADGTRVYSQRYPKAG
                     TPNARVDLYVFDIATGQSVKVDLGRDPDIYLARVDWTSDGKALLVQRESRDQKKLDLL
                     RVDPATGKAARLFTETAKTWINLHDNLKPLADGSLLWTSERDGFSHLYRWREGQWTQL
                     TRGPWQVERVAGVDEAKGLAYVLANKDTPLEWQLYAVPIARAGEPRRLTDAGFSHSVE
                     MNEAASHAIVTRSSTTQPAQTYLANADGANRRWIEENAIARGAYAPFLPNHVAPRFGV
                     IKAADDTTDLHYKLYVPKGFAGPRPVLVWVYGGPGAGRQVANEWVRDLPLQQYLVSKG
                     WVIFSLDNRGTPDRGKVFEDAIYHAMGKAEVADQLAGVAWLKQQPFVDPKRIAVFGWS
                     YGGYMTLKLLEAAPGMFAAGVAGAPVTKWELYDTHYTERYLGNPAIDPKPYAASDALD
                     NATAIKDSLLLIHGMSDDNVVFDNSTALMAKLQAAAIPFEAMVYPGFGHRVAGPGVSV
                     HLWRTIESFLDRKVAAH"
BASE COUNT          404 a          794 c          775 g          418 t
ORIGIN      
        1 atcgtcgacg aagccgccaa accgccggcg cgcgacacgc tcctgtggta ccggctcgcc
       61 tgcggcctgc cccgtgcgct gccggacgag gcggtagccg atctcgatgg cgcggcggcc
      121 gaagcagcgc gtgccgatta tggctacgtg ctggaacagc tcgggccgtg cacgcgcaac
      181 cgggcgatca gaacgagctg atttcgacgc caacccccgc gcaatcgggg tagatgtcgg
      241 gcttgcgggt cgagacccgg agtcccgtga caccctggcg cgccgcgata agcgtgtaga
      301 tttcgcgcgc cagcgtttcc tgcaggttga agcggcggcc ctccgtcgtg cgccggattt
      361 cgctgcgcag gaaatcatag ttccaggccg cggcagcgct gtcttcgctc gcgaacgcgt
      421 ccggctcgac ccagacttcg acgctgacca gcagccgctg gggcgtgccg acttcgaaat
      481 cgtggaagcc aatatcgacc gggagatcga aatcctgaag gaagatgcgg aaactgcggg
      541 gcgcgaggct gtcgggcacg agcccatcga tccgcggggg agtgatcatg cggcgcgctg
      601 tggaaccagc aaggcaggga tgcaaggccc ccgcgcctca gtgcgccgcg actttcctgt
      661 cgaggaagct ctcgattgtc cgccagagat ggacgctcac ccccggcccg gccactcggt
      721 ggccgaatcc cggatagacc atcgcctcga acggaatcgc cgctgcctgc agcttcgcca
      781 taagcgcagt cgaattgtca aagacgacat tgtcgtccga catcccgtgg atcaggagca
      841 gcgagtcctt gatcgcggtt gcattatcca gcgcgtccga cgcggcatag ggcttcggat
      901 cgatggccgg gttgccgaga tagcgctctg tatagtgggt gtcgtaaagt tcccacttcg
      961 tcaccggcgc accggcgaca ccggctgcga acatgcccgg cgcggcctcc agcagcttca
     1021 gtgtcatata gccgccatag gaccatccaa agacggcgat ccgcttcgga tcgacgaacg
     1081 gctgctgctt cagccaagcg acgccggcaa gctggtcggc gacttccgct ttgcccatcg
     1141 cgtgatagat cgcgtcctcg aacaccttgc cgcgatcagg cgtgccgcga ttgtcgagtg
     1201 aaaaaatgac ccagcccttc gagaccagat actgctggag gggcaagtcg cgcacccact
     1261 cgtttgcaac ctgccgcccc gcgcccggcc cgccatagac ccagaccagc accggccgcg
     1321 ggccggcaaa gcccttgggc acgtagagct tgtaatgaag gtccgtcgtg tcgtcggcgg
     1381 ctttgatcac gccgaagcgg ggcgcgacat ggttcggcag aaacggtgca taggcgccgc
     1441 gcgcgatcgc attctcctcg atccagcggc ggttcgctcc gtctgcattg gcgagatagg
     1501 tctgggccgg ctgcgtggtg ctcgagcgcg tgacgatcgc gtggctggcc gcctcgttca
     1561 tctcgaccga atggctgaag cctgcatcgg tcagccgccg cggctcgccc gctctggcga
     1621 tcggcactgc gtatagctgc cattcgagcg gcgtgtcctt gttggcgagc acataggcga
     1681 ggcccttcgc ctcatcgacg ccggcgaccc tctccacttg ccatggccca cgggtgagct
     1741 gcgtccattg cccctcgcgc cagcgataga gatggctgaa cccgtctcgc tccgaggtcc
     1801 agagcaggct gccgtcagcg agcggcttca gattgtcgtg caggttgatc caggtctttg
     1861 ccgtctcggt gaacagccga gccgccttgc ccgtcgcagg atcgacgcga agcaggtcga
     1921 gcttcttctg gtcacggctt tcgcgctgga ccagcagcgc cttgccgtcg ctcgtccagt
     1981 ccacgcgggc caggtagatg tcgggatcgc gccccagatc gacctttacg ctctgaccag
     2041 tcgcgatatc gaagacgtaa agatcgaccc gcgcgttggg cgtgcctgct ttgggatagc
     2101 gttgggaata gacgcgggtg ccgtccgcgc cgattgccgc gcgcgtgacc acgccgaccg
     2161 ggctttcgtc gacccgcgcg actgtgatgc ggcgatcgtc gggggaccac caatggccgc
     2221 gcgagcggtg catttcttcc tgtgccacaa actcggcgac gccccagctg agcgtgccgc
     2281 cgccgtccct cgtcagcgcg cgctccttgc ccgagccgag atcgagcacg acgagattct
     2341 ggtcgcggac gaaggagacg aacccgcctt tcggactgac ggtgccgtcc a
//
LOCUS       DASQVK010000249         2004 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_363814,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000249 DASQVK010000000
VERSION     DASQVK010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363814"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..315)
                     /locus_tag="VE567_05360"
     CDS             complement(<1..315)
                     /locus_tag="VE567_05360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010214961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HYZ48306.1"
                     /translation="MQTILDELEKRRGLARLGGGQKRIDAQHAKGKLTARERIEVLLD
                     QDSFEELDMYVEHNCVDFGMETQHIPGDGVVTGSGTINGRLVFVFSQDFTVFGGSLSE
                     RHA"
     gene            453..>2004
                     /gene="acs"
                     /locus_tag="VE567_05365"
     CDS             453..>2004
                     /gene="acs"
                     /locus_tag="VE567_05365"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HYZ48307.1"
                     /translation="MADLYPVPAEWAKNARVNAERYAQLYGRSLADPGSFWLDQARRL
                     EWIKRPEIAGDWSFREEDFRIDWFRDGKLNASVSCIDRHLKNRADQVAILWEPDEPGE
                     EARRFTYRELYAEVCRFANVLKAQGVRKGDRVTIYMPMIPEAAFAMLACARIGAIHSV
                     VFGGFSPEALAGRIQDCDSKFVVTADEGRRGGKRVPLKANVDAAAAHAPAMERVIVVR
                     ATGAEVTMQPGRDIWYHEVAIDADAECPCEPMSAEDPLFILYTSGSTGKPKGVLHTTG
                     GYLVWVSLTHELVFDYRPGQVYWCAADIGWVTGHSYILYGPLANGATTVMFEGVPNWP
                     TPSRIWEVVDRHGIEIVYTAPTALRALMREGDEWVKRTSRGSLKLLGTVGEPINPEAW
                     RWYHDVVGDGRCPIVDTWWQTETGGAMIAPLPGATDLKPGSATKPLPGIDPQIVDAEG
                     NVLQGAAEGNLVITKSWPGQMRTVWGDHGRFFQTYFTTYPGKYFTGDGARRDEDGFYW
                     ITGRVDDVL"
BASE COUNT          354 a          630 c          680 g          340 t
ORIGIN      
        1 ggcgtggcgt tcggagagag agccaccgaa gacggtgaaa tcctggctga acacgaagac
       61 gaggcgaccg ttgatcgtgc ctgagccggt aacgacgccg tcgccgggaa tgtgctgcgt
      121 ctccatgccg aaatcgacgc aattgtgctc gacatacatg tcgagctctt cgaacgaatc
      181 ctgatcgagc agcacctcga tccgctcgcg cgcggtgagc ttgcccttgg cgtgctgcgc
      241 gtcgatccgc ttttgcccgc cccccagccg cgcgagaccg cggcgctttt ccagttcgtc
      301 gagaatggtc tgcatgagaa atgccttttc caagctttgc gtccgaacgc aaatgtggaa
      361 ttgcacaggt tgcgattgat ctggcgaccg gccggccccc cttgtcattg cttcctccgg
      421 cagcgaaagg agttggtgaa cggagggggt taatggccga tctttatcca gtgccggcgg
      481 aatgggcgaa gaacgctcgc gtgaacgccg aacgatatgc acagctctat ggccggtcgc
      541 tggccgatcc gggcagcttc tggctggatc aggcgcggcg actggaatgg atcaagcggc
      601 cggagatcgc cggcgactgg tcgttccgcg aagaggattt ccgcatcgac tggttccgcg
      661 acggcaagct caacgcttcc gtcagctgca tcgaccggca tctgaagaac cgggcagacc
      721 aagtcgcgat cctgtgggag ccggacgagc cgggcgagga agcgcggcgc ttcacctatc
      781 gcgagcttta tgccgaggtc tgccgcttcg ccaacgtgct caaggcccag ggcgtccgta
      841 aaggcgaccg cgtcaccatc tacatgccga tgatccccga agcggcgttc gcgatgctcg
      901 cctgcgcgcg gatcggggcg atccattctg tggtgttcgg cggcttttcc cccgaggcgc
      961 tggccgggcg catccaggac tgcgattcca agttcgtcgt cactgccgac gaagggcggc
     1021 ggggcggcaa gcgggtgccg ctcaaggcca atgtcgacgc ggcggcggcg catgcgcccg
     1081 ccatggagcg agtgatcgtc gtccgcgcga ccggggccga ggtgacgatg cagccgggcc
     1141 gcgacatctg gtatcacgaa gtggccatag acgcggacgc cgagtgccca tgcgagccga
     1201 tgagcgcgga ggatccgctg ttcatcctct acacctcggg ctcgacgggc aagcccaagg
     1261 gcgtgctgca caccaccggc ggctatctgg tctgggtgag cctcacgcac gagctggtgt
     1321 tcgattaccg ccccggccaa gtctattggt gcgcggcgga catcggctgg gtgaccggcc
     1381 acagctatat cctctacggc ccgctcgcga atggcgcgac gaccgtgatg ttcgaaggcg
     1441 tgccgaactg gccgacgccc agccgcatct gggaagtggt ggaccggcac gggatcgaga
     1501 tcgtctatac cgcgccaacc gcgctacgcg cgctgatgcg ggaaggcgac gagtgggtga
     1561 agcggacgag ccgcggctcg ctgaagctgc tcggcacggt cggcgagccg atcaacccgg
     1621 aagcctggcg ctggtatcat gacgtggtcg gcgacgggcg gtgcccgatc gtcgatacct
     1681 ggtggcagac ggagacgggc ggcgcgatga tcgctcccct gcccggcgcg accgatctga
     1741 agcccgggtc cgcgaccaag ccgctgcccg gcatcgaccc acagatcgtc gatgccgaag
     1801 gcaacgtgct gcagggcgcg gccgagggca atctcgtcat caccaagagc tggccggggc
     1861 agatgcgcac cgtctggggc gaccatggcc gcttcttcca gacctatttc accacttatc
     1921 cgggcaaata tttcaccggc gacggcgcgc ggcgcgacga ggacggcttt tactggatca
     1981 ccggccgcgt cgacgatgtg ctca
//
LOCUS       DASQVK010000250         5657 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_363836,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000250 DASQVK010000000
VERSION     DASQVK010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5657
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363836"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1593
                     /locus_tag="VE567_05370"
     CDS             <1..1593
                     /locus_tag="VE567_05370"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYZ48308.1"
                     /translation="PLSDTVAIRLSASHRERDGFTLNVPTGTDLDNINRDTLRARLRA
                     EIGPDVTLDLAGDYSHDRTNKAIGEPISDTFGTGPTPLPGAFDTPFNVDPLQDIRTAG
                     ASATLAWRLSDAFTLTSISAWRSTNWRRTNDLDYVPLDFARMNYRDRFRQFSQEVRLN
                     FTSERLTGTAGLYYFDERAQTDRKVFAGNDIVFLPFGLPAGLTAQVQANVKTRSYAAF
                     ANADWKLTDALTLNLGGRFTHDRLRLGDYSTRGPLVFGLGTVGNFDDRQSADSFDPSI
                     ALTYAVAPRTNLYARYARGYKSGGWNVDFISAAEFADRLRFRPERVDSGEIGLKHQGR
                     DLRVSLAAFYMTIGDYQIDQFVDLGAGQTSIQLRNAARARSWGAEAQLDATPIERLNI
                     STGLGYTNAEFTRFKDGGGPGVDLDGNRLPYAPRLTASAELRYAIPLSFGPTLNLSTD
                     WTYRSKSFSGPENLARQAIDARHLVGVRAELDGGHWRLAGWVRNLFDTGYIDNRIFDF
                     FQTAVVERGEPRTYGITGTLSF"
     gene            complement(1693..3486)
                     /locus_tag="VE567_05375"
     CDS             complement(1693..3486)
                     /locus_tag="VE567_05375"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HYZ48309.1"
                     /translation="MAASEYFDQTTDCVYVADERWTIIYCNKPADRELGLRSLIGKTV
                     WDAFPAARGTQFEERFVRARETRSVEVFEAYYEPLEQWYDVHAVPVADGLIISFRNIS
                     ARKKAQLKAEETAALLDAIINSAEDLIFVKGLDGRFVLTNKQLENAGPSLIGRKVDDE
                     YLPDLAAGYAAADRQVFETGVPAVVEEMIPIRGEQRMFQTIKVPWIVNGAIRGLIGVS
                     RDITERLRAETRVRQSEERYRFAAKATNDAVWDWDLASGEIAWTQAIETLAREAPLPS
                     IGWWEDRIHPDDREQVLGHLAAFLETGGEHWEQEYRFRRADGSYAFVLDRGYVIHDEQ
                     RRPVRMIGAMADLSQRVEAQRRLDQLQNELAHVSRVSAMGTMASTLAHEINQPLAAIA
                     NYCAAARRLVDKRQAGNAETIAGILKDASQEVNRVGEMIRRIRRMVAHGQAQIQPVPV
                     KALVEDALRLALPNPHLGGVAISLDVGPDMRVEADPIQIQQVLINLIRNALEAMEGRA
                     TRILSIEARAKGGLVELRVGDTGCGIPDDLREGLFTAFRSTKAEGLGVGLTICRTIVE
                     AHGGRMSLVSSGAEGTVIGFELRSAMLEASR"
     gene            3616..4308
                     /locus_tag="VE567_05380"
     CDS             3616..4308
                     /locus_tag="VE567_05380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006959964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYZ48310.1"
                     /translation="MVSSRPLRNRVSDPKTPEAKPLVVADGARRHVYVVDDDAAVRRS
                     TSILLTAAGYMPRPFVSGTDFLEEAAELRPGVVLLDIRMPELDGLSLLDRLPEPVRAR
                     LPVVMITGHGDLPTAVKAMKIGAKDFLEKPFDDTALFNILDSAFAGLQACIAEQSRRS
                     ERRALMDKLTPRELDVLCALAQGHANKMVAHELGLSVRTVEMHRAKLLDRLGVRTVAE
                     AVRIAYEAKLEL"
     gene            complement(4322..4939)
                     /locus_tag="VE567_05385"
     CDS             complement(4322..4939)
                     /locus_tag="VE567_05385"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HYZ48311.1"
                     /translation="MRNTALRVEEAPKTWSREIGERRANHRLRTVYCVSRVSANGDLG
                     LARLLNISNEGMMLSHSLDVRPGDHLRVDLSEDRSYETRVIWRDGLHCGVRLRAPIDC
                     VETVKGLCEDRRACAGRPLRLPLSKEAMASSELGLHRIRLQDVSQNGLNVFHDGRFKE
                     GLAVKVRLAAGIERRGVVRWLQDGRAGIALRDLLTVEQLGSANKL"
     gene            5139..5549
                     /locus_tag="VE567_05390"
     CDS             5139..5549
                     /locus_tag="VE567_05390"
                     /inference="COORDINATES: protein motif:HMM:NF016807.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BLUF domain-containing protein"
                     /protein_id="HYZ48312.1"
                     /translation="MNQLVTWLYVSRSTLSPDQAAAAIAEIVHVSRARNAELKVTGAL
                     AFTGAAFGQFLEGPVESVEAVRASISRDARHEDILTVAEGAAPQRVFADWSLAYSGAS
                     SFFGRVLERVRQDHPRRPSQSARELTQLLFELAH"
BASE COUNT          969 a         1943 c         1689 g         1056 t
ORIGIN      
        1 cccctttccg acacggtcgc gatccgcctc tccgcctcgc atcgcgagcg cgacggcttc
       61 acgctgaacg tgccgaccgg caccgacctc gacaatatca accgcgacac gctgcgggcc
      121 cgcctgcgcg ccgagatcgg ccccgacgtc acgctcgacc tggccggcga ctacagccat
      181 gaccgcacca acaaggcaat cggcgagccg atcagcgata cgttcggcac cggccctacc
      241 ccgctgcccg gcgcgttcga cacgcccttc aacgtcgatc cgctgcagga catccgcacg
      301 gccggcgcct ccgccacatt ggcctggcgt ctgagcgatg ccttcactct cacctccatc
      361 tccgcctggc gttcgacgaa ttggcggcgg acgaacgacc tcgattatgt cccgctcgac
      421 tttgcgagga tgaactatcg cgatcgcttc cggcagttca gccaggaagt gcgcctcaat
      481 ttcacctccg agcggctgac cggcaccgcc ggcctctatt atttcgacga gcgcgcgcag
      541 accgaccgca aggtctttgc cggcaacgac attgtcttcc tgcccttcgg cctcccggcc
      601 ggcctcaccg cgcaggtgca ggcaaatgtg aagacgcgct cctatgccgc tttcgccaat
      661 gccgactgga aactcaccga cgcgctcacg ctcaacctcg gcggccgctt cacgcacgac
      721 cggcttcggc tcggcgatta ttccaccagg ggtccgcttg tcttcggcct gggcaccgtc
      781 ggcaatttcg acgaccgcca atccgccgac agcttcgatc ccagcatcgc cctcacctat
      841 gcggtcgcgc cgcgcaccaa cctctatgcc cgttacgccc gcggctacaa aagcggcggc
      901 tggaacgtcg atttcatcag cgccgccgag ttcgccgacc ggctccgctt ccgcccggaa
      961 cgtgtcgatt caggcgagat cggcctcaag caccaaggcc gcgacctgcg cgtctcgctc
     1021 gccgctttct atatgacgat cggcgattat cagatcgacc agttcgtcga cctcggcgcc
     1081 ggccagacct cgatccagct ccgcaacgcc gcccgcgccc gaagctgggg cgcggaagcg
     1141 cagctcgacg cgacgcccat cgagcggctg aacatcagca cgggcctcgg ctacaccaat
     1201 gccgaattca cgcgcttcaa ggacggcggc ggcccgggcg tcgatttgga cggcaaccgc
     1261 ctcccctatg cgccgcggct cactgcttcg gccgagttgc gctacgcgat cccgctcagc
     1321 ttcggcccga cgctaaacct ctcgaccgac tggacctatc gctcgaaaag cttttccggc
     1381 cccgagaacc tcgcccgcca ggcgatcgac gcccgccatc tggtcggtgt ccgcgccgaa
     1441 ctcgatggcg gccactggcg ccttgcgggc tgggtccgca acctgttcga cacaggctat
     1501 atcgacaacc gcatcttcga cttcttccag accgcagtgg tggaacgcgg cgagccgcgc
     1561 acttatggga tcacgggcac gctgagcttt tgatggtaga gcgggcgagc gagccgctcg
     1621 ccctttcctt cgctcccgaa catccgcgct tttgcctgga cgagcgccgg gccggggccg
     1681 cgcgaccgag ttctagcggg acgcctccag catcgcgctg cgaagttcga acccgatgac
     1741 ggtgccctcg gcgccgctgc tcaccaagga catgcgaccg ccatgggctt ccacgatggt
     1801 gcggcagatg gtcagcccga cgcctaaccc ctccgccttg gtcgagcgaa aggcggtgaa
     1861 caggccctct ctcagatcgt cgggaatgcc gcagccggtg tcgccgaccc gcagctccac
     1921 cagaccgccc ttggctcgtg cctcgatcga caggatcctc gtcgccctgc cctccatagc
     1981 ctcgagggca ttgcggataa gattgatcag cacctgctgg atttggatcg ggtccgcttc
     2041 gacacgcata tccggcccca cgtcaaggct gatcgcgacg ccaccgagat gcgggttcgg
     2101 cagcgcgagg cgcaacgcat cctccacgag cgctttcacg ggaaccggct ggatctgggc
     2161 ctgcccgtgc gccaccatcc ggcggatgcg gcggatcatc tcgccgaccc gattgacctc
     2221 ctggctcgcg tctttgagaa ttccggcgat cgtctcggca ttcccagctt gcctcttgtc
     2281 gaccagccgg cgcgcggcgg cgcagtaatt ggcaattgcc gccagcggct ggttgatctc
     2341 atgggcgagg gtggaagcca tcgtgcccat cgcactgacg cgggagacgt gggcgagctc
     2401 gttctgcaac tggtcgaggc ggcgctgcgc ctcgacgcgc tgggaaaggt cggccatcgc
     2461 cccgatcatg cggacgggcc gccgctgctc gtcatggatg acatagccgc ggtccaggac
     2521 gaacgcatag ctcccgtccg cgcggcggaa gcgatactcc tgttcccaat gctcgccccc
     2581 ggtttcgagg aatgcggcaa gatgaccgag aacctgctcg cggtcgtcgg ggtggatccg
     2641 atcctcccac cagccgatgc tggggagagg agcctcacgg gccagcgttt cgattgcctg
     2701 ggtccaggcg atttcgccgg aggcaaggtc ccaatcccat acggcgtcgt tggtagcctt
     2761 ggccgcgaaa cggtatcgct cctcgctctg cctcacccgg gtctcggcgc ggagacgttc
     2821 ggtgatgtcg cgcgatacgc cgatcagacc gcggatggcg ccgttgacga tccagggaac
     2881 cttgatcgtc tggaacatgc gctgttcacc ccggatcggg atcatttcct ccacgaccgc
     2941 aggcacaccg gtttcgaaca cctgtctgtc ggccgcggca tagcccgccg ccaggtccgg
     3001 aagatattca tcgtcgacct tgcggccgat cagcgaaggg cccgcattct ccaattgctt
     3061 gttggtcagc acgaaccggc cgtcgaggcc cttgacgaaa atgagatcct cggcgctgtt
     3121 gatgattgca tccagcagtg ctgccgtttc ctccgctttc agctgcgcct tcttccttgc
     3181 ggagatgttg cggaaggaga tgatgagccc gtctgcgacc ggcaccgcat ggacatcgta
     3241 ccattgttca agcggttcat aataagcttc gaagacttct accgaccgcg tctcacgggc
     3301 gcgaacaaag cgctcttcga attgggttcc gcgtgctgca ggaaacgcat cccagactgt
     3361 cttgccaatc aaggagcgta ggccgagctc ccggtctgca ggcttgttgc agtagataat
     3421 cgtccatcgc tcatcggcca catagacgca gtcggtggtc tggtcgaaat attcggatgc
     3481 ggccacggat tgcatgcggt cgaaagtcca ggtcgtcggg gctgagggcg ggaattagac
     3541 cggagcgatt gaaaattgcc agcgctgcaa gcaatttaag atgactttcc ttttcctgac
     3601 tgccacgagc ggcgcatggt atcctcgcgc ccgttgcgca atcgcgtatc tgatccaaag
     3661 actcctgaag cgaagcctct cgtcgtggcg gacggggcca ggcggcacgt ctatgtcgtc
     3721 gatgacgacg ccgcggtccg ccggtcgaca tccatcctgc tgacggccgc cggctatatg
     3781 ccgcggccat tcgtcagtgg cacggatttc cttgaggagg ccgcagaatt gcggcccggc
     3841 gtcgtactgc tcgacatccg tatgccggag ctcgatggcc tttcacttct cgaccggttg
     3901 ccagagccgg tccgcgcccg gctcccggtg gtgatgatca ccgggcatgg cgatttgccg
     3961 accgccgtca aggcgatgaa gatcggcgcc aaagactttc tcgaaaagcc gtttgatgac
     4021 acggctttgt tcaatattct cgacagcgcc tttgccgggc tacaggcgtg tatcgcggag
     4081 cagtcccggc gcagcgaacg gcgggcgctg atggacaagc tgacgccgcg agagctcgac
     4141 gtcctgtgtg ctcttgcaca aggccatgcg aacaaaatgg tcgcacatga gctgggcctc
     4201 agcgtgcgca ctgtcgagat gcatcgcgcc aagctgcttg atcgtcttgg cgtgcgtacc
     4261 gtggccgagg ccgtgagaat tgcctatgaa gccaagctag aactctaggt cggctcgccc
     4321 ctcaaagctt gttcgctgat cccaactgct ccaccgtcag caggtcccgc aaggcgatgc
     4381 ctgcgcggcc gtcctgcagc cagcggacca ccccgcggcg ctcgatcccg gctgcaaggc
     4441 gcaccttcac cgccagacct tccttgaacc gcccatcatg aaagacgttc aggccattct
     4501 gcgaaacgtc ctgcagcctg atgcggtgca ggcccaattc gctgctcgcc attgcctcct
     4561 tgctgagcgg gaggcgcagc ggacgcccgg cgcaggcccg gcgatcctcg cacaagccct
     4621 tcacggtttc gacgcagtcg atcggggcgc gcagccggac cccgcaatgc aggccgtcgc
     4681 gccatatgac tcgcgtttcg taagagcggt cctccgagag gtcgacgcgc agatggtcgc
     4741 cgggccgcac gtccagcgaa tgcgacaaca tcattccttc gttcgaaata ttgaggaggc
     4801 gggccaagcc taggtcccca ttggcggata cgcgcgagac gcaatagacc gtccgcagcc
     4861 ggtgattggc gcgacgctcg ccaatctccc tcgaccacgt ctttggcgct tcctccacgc
     4921 gcaaggctgt atttcgcatg acgattctcc ctcccggagc cgcgaaaatg gctgggcgaa
     4981 ggagcgcgcg acagctgccg gaatttcggt gggtgccttt actttttgtt aggagatgcg
     5041 gtgctccagc gcacctgaac gtaaacgttt ctttcccgtt gcgagaccgt ttgcgccacg
     5101 ctaacgggcg cccgcaattg tcacattctc gtgccgcgat gaaccagctt gtcacatggc
     5161 tgtacgtcag ccgctcaacc ctttcgcccg atcaggcggc tgcagcgatt gccgagatcg
     5221 tgcacgtttc ccgcgcccgc aatgccgagc tgaaggtcac gggcgccctc gccttcacgg
     5281 gcgccgcgtt cggccagttt ctggaaggtc ctgtcgagtc ggtggaagcg gtgcgcgcca
     5341 gcatctctcg cgacgcccgc catgaagaca ttctgacagt ggccgaggga gccgccccgc
     5401 agcgggtgtt tgcggattgg tcgctcgcat attcgggggc ctcgtcattt ttcggacgcg
     5461 tgctggagcg agtgcgccag gaccatccgc gccgcccttc ccaatcggct cgggagctca
     5521 cgcaactgct cttcgaactc gcacactagc cgccgggccc gcgtccctgt cgaggccatc
     5581 gatcaggtcg gttcgccgtg accgctctgc caaatatctc tgtcctacac actcgcctgc
     5641 ccgctagcat ggccggc
//
LOCUS       DASQVK010000251         3944 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_269464,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000251 DASQVK010000000
VERSION     DASQVK010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3944)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3944)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3944
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269464"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(154..1176)
                     /locus_tag="VE567_05395"
     CDS             complement(154..1176)
                     /locus_tag="VE567_05395"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HYZ48313.1"
                     /translation="MWDAIVVGAGPAGAIAALILARGGHRTLLTDRIEDDRSRIGEAL
                     PEAAGRLLRSIGLPAPEADGPHAAVGGVFLSWNSDDLIALDSFRNPAGQGWRLDRERF
                     DADLRAAAITAGASYRNDRVRHLCRQGGCWEVGLESGEVACARWVIDATGRSALLGRR
                     LGVRRLRDTGLVALYAQGRPGPTLDINRTVIEAVKTGWWYAARLPSGAAIAGFHTDAR
                     EAARLRAEPGAWEQEFSRTRHVAHLFSGAQLEGAHAVDARGARLTDFFGEGWIACGDA
                     AMCFDPISGQGILSALHGGLKAGTAVAAALDGRTELLTEYSARINDVWAIYRTRLRGI
                     YQSERR"
     gene            complement(1182..1664)
                     /locus_tag="VE567_05400"
     CDS             complement(1182..1664)
                     /locus_tag="VE567_05400"
                     /inference="COORDINATES: protein motif:HMM:NF036870.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48314.1"
                     /translation="MALPWQGDTAFCRSGYYPEYDPYVPTFWAARVPNQVLTEEDYAK
                     VIDTSLSRQERLAAYNHRPPWLRAIDGHVVADVMLRMIAEFGALGIVEPRPGVKGDPD
                     FPETIFVESLAASHLKTVAMQVSRFLAAPPRPLTRIERAGWSSEEQFREFHRVRVRLE
                     "
     gene            complement(1609..>3944)
                     /locus_tag="VE567_05405"
     CDS             complement(1609..>3944)
                     /locus_tag="VE567_05405"
                     /inference="COORDINATES: protein motif:HMM:NF036537.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LodA/GoxA family CTQ-dependent oxidase"
                     /protein_id="HYZ48315.1"
                     /translation="GLFSGGEYPAWIRFSSDTLPTLNDFKTTVGIGIKLFNTPTPKIF
                     GDPHDRTFDFIFQNFDVFFVDTAADMCAFTKAGVVDGDYGPYLAAHPATAKLLDEMAK
                     PVASTLGTEYWSCVPFHFGPDRFVKYKLEPTLEPAPITDPPADPTYLAADLHTRLKAG
                     AASFRFYLQFNTDPSAMPLDKATVRWDESVSQPVHVADLILPQQDIRARGQAEYGENL
                     SWNIWRVTEEHKPVGSIADARRAVYAASAEQRRNVNGIPTGEPSEPKPAIDPAHCVDT
                     RIVRAAIHPAIGIARIGDSATDFFVGPEVVFPAAEQPGHYRDGAGALKRQAARFRIYG
                     FNARGEVVRELLPDNADIKWTVHLANRKAQWYQFQAALDIPEAAAMSVPRRNADFADR
                     AALAIDPGPRSIGGKSTSGGAEHRFDTDKFKGTPVTLGEIRTDEAGRLVVLGGTGKSA
                     SPSGAPVFKPSDPNSFNNADDWYDDTSDGPVMAMVSIGGEPIPVEAAWVVVAPPNYAP
                     DIVSWRTMYDLLVDTYTQCGWMQVPEKLSFVDDILPILQRLSNLQRVNQGFATLYGKG
                     RPMDFASDDFVAKLASKPDPVTKSDPYAELRRVIYNSFRPPQPTIGEPVVWPHVWPWI
                     YGDAFGSFPASGPGNMLTMTRFQAVVLRRWVEGDFELDWPRAAPPPGSLKEVPLAEQP
                     DMLDRSALHFCLADTFHPGCEMTWPMRHASMYDKPFRIRHRAAGTPEPDYGRQLDPQT
                     ALQMDRPAIRPGTGRHHAVDGAALARRHRLLPLRLLS"
BASE COUNT          702 a         1259 c         1308 g          675 t
ORIGIN      
        1 gggggaattt cgctcaatgc cggcgatcga gtcgaactat cgcccgcaac aggcgcatca
       61 catggcgcgc tcaccatcag attgaagcgc cgcccgatgt tggctcgcgg caatgtcgcc
      121 gttccgcgaa cgtgaccaga agcaggccgc gggctagcgc cgttcgcttt ggtaaatgcc
      181 gcgcagccgc gtgcgataaa ttgcccaaac atcattgatg cgggctgaat attcagtgag
      241 cagctcagtc cgtccatcga gagcggccgc gaccgcggtg ccggccttta gtccgccatg
      301 gagggcggaa aggatgcctt gtccggaaat cggatcgaag cacatggcgg catcgccgca
      361 cgcgatccat ccctcgccga aaaaatctgt gagccgcgcg ccccgcgcgt ccacggcatg
      421 tgcgccctca agctgcgcgc cggagaagag atgcgcgacg tgtcttgtcc gcgagaattc
      481 ctgctcccat gcgcctggct cggcgcggag acgggcggcc tcgcgggcat cggtgtggaa
      541 gccagcgatc gcggccccgg atggcagccg ggcggcgtac caccagcccg ttttgacggc
      601 ctcgatcacg gtccggttga tgtcaagcgt cggaccgggt cgcccttgcg cgtagagcgc
      661 cacaaggccg gtgtcgcgca gccgtcttac cccgaggcga cgcccgagca gggcgcttcg
      721 accggtggcg tcgataaccc agcgcgcgca cgccacctcg ccgctctcga gcccaacctc
      781 ccagcaaccg ccttgccgac aaagatgccg cacacggtcg ttgcggtatg acgcaccggc
      841 cgtgatcgcg gcggcgcgga gatcggcatc gaagcgttcg cggtccagac gccagccttg
      901 gccggcagga ttgcgaaatg aatcgagcgc gatcaggtcg tccgaattcc aggacaggaa
      961 tacgccgccg accgccgcgt gtggcccatc ggcttcgggt gcgggcagcc cgatcgagcg
     1021 aagcaggcgt ccggccgcct ccggcaacgc ctctccgatc ctggatcgat cgtcttcgat
     1081 ccggtccgtc aacagcgttc gatgcccgcc gcgcgccaga atgagggcag cgatggcgcc
     1141 cgccggtccg gcgccgacga caatcgcgtc ccacatgagt gctactcgag ccggacgcgg
     1201 acccggtgaa actcgcgaaa ttgctcctcg ctggaccacc cggccctttc gatgcgcgtg
     1261 agtggccggg gcggcgctgc gagaaaccgg ctgacctgca tggcaaccgt cttcagatgg
     1321 ctcgcggcca gcgattcgac gaagatcgtc tccggaaaat ccggatcgcc tttcacgccc
     1381 gggcgcggct cgacaattcc gagcgcgccg aactcggcaa tcatccgcag catcacgtcc
     1441 gcgacgacgt gaccgtcgat ggcgcgcagc catggcggac gatgattgta ggccgcgagg
     1501 cgctcctggc gtgacaagct cgtgtcgatg acctttgcat agtcctcctc ggtcagcacc
     1561 tggttgggca cccgcgcggc ccagaatgtg ggtacatagg gatcgtattc aggatagtaa
     1621 ccggagcggc agaaggcggt gtcgccttgc cagggcagcg ccatccaccg cgtgatgtcg
     1681 cccggtccct gggcgtatag cgggccggtc catctgcagc gcagtttgcg gatcaagctg
     1741 cctgccgtaa tctggctccg gcgtgccagc ggcccggtgg cggatgcgga acggcttgtc
     1801 gtacatggat gcgtggcgca tcggccaagt catctcgcag ccgggatgga aggtgtcggc
     1861 aagacagaag tgcagcgcgc tcctgtccag catgtccggc tgttctgcaa gcggcacctc
     1921 cttgagcgaa ccgggcggcg gcgccgcgcg cggccaatcg agctcgaaat cgccctcgac
     1981 ccagcgtcgc agcaccaccg cctgaaaacg cgtcatggtg agcatgttgc ccggcccact
     2041 ggccggaaac gagccgaagg cgtcgccata gatccatggc cagacatgag gccaaaccac
     2101 gggttcgccg atcgtcggct gcggcggacg aaaactgttg tagatcaccc gtctcagctc
     2161 ggcataggga tcgctcttcg tgaccgggtc tggtttgctc gcgagttttg cgacgaaatc
     2221 atcactcgcg aaatccatcg ggcggccctt gccgtacagc gtcgcgaagc cctgattgac
     2281 cctttgcaga ttcgacagcc gctgcaggat cggcaggatg tcgtcaacga aggaaagctt
     2341 ttcagggacc tgcatccagc cgcattgggt ataggtgtcg acaagcaggt cgtacatcgt
     2401 gcgccaactg acaatgtcgg gcgcatagtt cggcggcgcc accacgaccc aggccgcttc
     2461 gaccgggata ggttcgccgc cgatcgacac catcgccatc accggcccat cggacgtgtc
     2521 gtcgtaccag tcgtcggcat tgttgaagct attgggatcg gacggcttga acacgggcgc
     2581 gccggagggc gaggcggatt ttccggtgcc gccgagcacg acaaggcggc cggcctcgtc
     2641 ggtgcggatt tctccaagcg tcaccggcgt ccctttgaat ttgtcggtgt cgaaccgatg
     2701 ttcggcgccg ccggaggttg acttgccgcc gatggagcgc ggccccggat cgatcgccaa
     2761 tgcggcgcgg tcggcaaagt ccgcgttgcg gcggggcacc gacatcgcgg ccgcctcggg
     2821 aatatcgagc gcggcctgaa actggtacca ttgcgccttg cgattggcga gatgcaccgt
     2881 ccatttgatg tcggcgttgt cgggcaggag ctcgcgcacc acctcgccgc gtgcgttgaa
     2941 cccgtaaatg cggaagcggg cggcctgccg tttcagggcg ccggcgccgt cgcgatagtg
     3001 cccgggttgc tcggcagccg gaaacacgac ctcgggaccg acgaaaaagt cggtcgcgct
     3061 gtccccgatg cgggcgatac cgatcgccgg atggatcgcg gcacggacga tcctggtatc
     3121 gacgcagtgc gccggatcga tcgccggctt cggctccgac ggctcgccgg tcggaatgcc
     3181 gttgacattg cggcgctgct ctgcggatgc cgcgtaaacc gcccggcgtg cgtccgcgat
     3241 cgagccgacc ggcttgtgct cctccgtaac gcgccagatg ttccaggaga gattctcgcc
     3301 gtactccgcc tgcccccgcg cccggatatc ctgctgcggc agaatcagat cggcgacgtg
     3361 aaccggctgg ctgacggact cgtcccagcg gacggtcgcc ttgtcgagcg gcatcgccga
     3421 aggatcggtg ttgaactgga ggtaaaagcg aaagctcgcc gcgcccgcct tcaaccgcgt
     3481 gtgcaggtcc gccgcgagat aggtcggatc cgccggcggg tcggtgatgg gggcaggttc
     3541 gagggtcggt tcgagcttgt atttgacgaa gcggtctggg ccgaagtgaa agggaacgca
     3601 gctccagtac tcggtgccca gggtgcttgc gaccggcttt gccatctcgt cgagcagctt
     3661 cgcggtggcc ggatgcgcgg cgagataggg accgtaatcc ccgtcgacta cgcccgcctt
     3721 cgtgaaggcg cacatgtcgg cggcagtatc gacgaaaaac acgtcgaaat tttgaaagat
     3781 gaagtcgaac gtccggtcgt gtggatcgcc gaagattttc ggcgtcgggg tattgaacag
     3841 cttgatgccg atcccgaccg tcgtcttgaa atcattcaac gtgggcaagg tatcggagga
     3901 gaaccggatc caggcgggat attcgccacc ggagaaaagc cctg
//
LOCUS       DASQVK010000252         3602 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_395909,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000252 DASQVK010000000
VERSION     DASQVK010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3602
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_395909"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..478
                     /locus_tag="VE567_05410"
     CDS             <1..478
                     /locus_tag="VE567_05410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018250601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HYZ48316.1"
                     /translation="NTIGTITDPNTAWMLLRSLETLELRMTRAGENAAKVCAFLRDHA
                     KVEHVGYLGFLEGDRQADIYQRHCTGAGSTFSLFLKGGEAEAFRFLDALKIAKLAVSL
                     GGTETLASHPAAMTHLSVPEARKKALGITDNLVRISVGVEDADDLIADFGQALAGV"
     gene            540..1649
                     /locus_tag="VE567_05415"
     CDS             540..1649
                     /locus_tag="VE567_05415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYZ48317.1"
                     /translation="MSGAADFVEEGDAGGRVVRFTGALTLARVGDLPERLSLVSGPVA
                     AVDLGSAERIDTIGAWIVRRFADEHQARIEHASPEAQRLIDEVERAHQPVQMRPEPVS
                     SFVRVVEEIGAAVAQAGRTLLGLLGFFGAMVISAVVVLTHPRRFRWNAVIQRFEVVGV
                     SALGIIGLMSFLIGIVIAQQGSVQLEQFGAEFLTINLIGRLTLRELGVLMTAIMVAGR
                     SGSAFAAQIGTMKLTEEIDAMRTIGVSPMEALVLPRVIAAVVMMPLLGVYSSLIGIIG
                     GGIFCWISLDIPPVTFVQRLREVVPLTDLYVGLVKAPVFGMIVALTGCFQGMQVEGDA
                     EQVGLRTTAAVVQAIFLVIVLDAFFAVFFERIGWI"
     gene            1646..2446
                     /locus_tag="VE567_05420"
     CDS             1646..2446
                     /locus_tag="VE567_05420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007703972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYZ48318.1"
                     /translation="MSDEPVVRVHGLRNSFGDQIVHENLDLEVRRGEILGVVGGSGTG
                     KSVLMRSIIGLQTPDAGEIEVFGEPIVGRADAETVEIRKRWGVLFQGGALFSTLTVAE
                     NIQVPIKEFYPNLDQALLDEIAGFKVVMSGLPADAGPKYPAELSGGMRKRAGLARALA
                     IDPELLFLDEPTAGLDPIGAARFDELTASLQKTLGLTVFLITHDLDTLYAICDRVAVL
                     ADKRVIAVGTIPELLALDHPWIQDYFKGPRGRMAALTEERRQQAEEAH"
     gene            2446..3387
                     /locus_tag="VE567_05425"
     CDS             2446..3387
                     /locus_tag="VE567_05425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HYZ48319.1"
                     /translation="METRSNHILVGSVVLILLAATAIFTVWLARVSDTNQKVYDVFFK
                     QSVEGLAKGSSVSYRGVPVGQVQDIKIWKDDPNFVRVRISVGEDVPVLVGTTASLQGS
                     FTGVSTMLLQGAQKGAPPITDIGPAGAPVIPTQSSGLGALLNSAPQLMERLSTLTERL
                     TLLLSDQNQRSFTHILSNVDRLSASLADRGTDIRATLAETRVAVKQAGDAAEQIGKLA
                     GTTNQLLDEQGRPLLADLRQTVARARTSMDNLDAIMTDARPGVQAFSKQTLPEVGLLV
                     RDLRDMAAALSGVADKINQGGASSLVGSRKLPDYQPK"
     gene            3396..>3602
                     /locus_tag="VE567_05430"
     CDS             3396..>3602
                     /locus_tag="VE567_05430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter"
                     /protein_id="HYZ48320.1"
                     /translation="MRITTPLAIALAISLSGCISFGAKPPKQLLTLTAAQTLPPGAAR
                     TVSPGDAITVLWPGVPAELATNRVP"
BASE COUNT          605 a         1180 c         1190 g          627 t
ORIGIN      
        1 gaacacgatc ggcacgatca ccgacccgaa caccgcctgg atgctgctgc gcagcctcga
       61 gacgctggag ctgaggatga cgcgcgccgg cgagaatgcg gcgaaggtct gcgcgtttct
      121 gcgcgatcac gcgaaggtcg agcatgtggg ctatctcggc ttcctcgaag gagatcgcca
      181 ggcggatatc tatcagcgcc actgcaccgg agccggctcg accttctcgc tgttcctgaa
      241 aggcggcgag gccgaggcct tccgcttcct cgatgcgctc aagatcgcca agctcgcggt
      301 gagccttggc ggcaccgaga ccctcgcctc gcatcccgca gcgatgacgc acttgtccgt
      361 gcccgaggcc cgcaagaaag cgctcggaat caccgacaat cttgttcgca tttcagtcgg
      421 cgtcgaagat gcggacgatc tgatcgccga cttcggccaa gcgctggcgg gcgtttgacg
      481 ctccgaccca aaatcggaac gtcttgcccg cggcgggatt atctcgcact ggtaacgaga
      541 tgagtggggc cgccgatttc gtcgaggaag gagatgccgg ggggcgggtc gtccgattta
      601 ccggcgcgct cacgcttgcc cgggtgggcg acctgccaga gcgattaagc ctggtgtccg
      661 ggccggtcgc ggccgtcgac ctgggcagcg ccgagcgcat cgacaccatc ggcgcctgga
      721 tcgtccgccg cttcgccgac gaacatcagg cccggatcga gcatgcgagc cccgaggccc
      781 agcgactgat cgacgaggtc gagcgggcgc atcagccggt gcagatgcgg cccgagcccg
      841 tctcttcttt cgtccgcgtg gtggaggaaa tcggtgccgc cgttgcccag gccgggcgaa
      901 ccctgttggg cctgctcggc tttttcggcg cgatggtgat ttcggcggtt gtcgtcctca
      961 cccatccgcg ccgtttccgc tggaacgcgg tcatccagcg cttcgaggtg gtcggcgtct
     1021 cagcgctcgg cattatcggg ctgatgagct tcctgatcgg aatcgtcatc gcgcagcaag
     1081 gctcggtgca gctggagcaa ttcggcgcgg agttcctgac gatcaacctg atcggccgct
     1141 tgaccctgcg cgaattgggc gtgctgatga ccgcgatcat ggtcgccggc cgctcgggct
     1201 ccgccttcgc agcacagatc ggcacgatga agctgaccga agagatcgac gcgatgcgga
     1261 cgatcggcgt gtcgccgatg gaggcgctgg tgctgccgcg cgtgattgcc gcggtggtca
     1321 tgatgccgct gcttggagtc tattcgtcgc tgatcgggat catcggcggc ggcatcttct
     1381 gctggatctc gctcgacatc ccgccagtca cattcgtcca gcgcctgcgc gaagtggtgc
     1441 cgctgacgga cctttacgtc ggcctcgtca aggcgccggt gttcggcatg atcgtggcgc
     1501 tcaccggctg ctttcagggc atgcaggtcg aaggcgatgc ggagcaagtc ggcctgcgca
     1561 ccaccgccgc cgtggtgcag gccatcttcc tcgtgatcgt gctcgacgcc ttcttcgccg
     1621 ttttcttcga gcggatcggc tggatatgag cgacgagccg gtcgtccgcg tgcacggact
     1681 gcgcaacagt ttcggcgatc agatcgtaca cgaaaatctc gacctggagg tacgtcgcgg
     1741 cgagattttg ggcgtggtcg gcggctcggg cacgggaaag tcggtgctga tgcgctcgat
     1801 catcgggctg cagaccccgg acgccggcga aatcgaagtg ttcggtgagc cgatcgtcgg
     1861 tcgcgccgac gccgagacgg tagaaatccg caagcgctgg ggcgtgctgt tccagggcgg
     1921 cgcgctgttt tcgacgctga ccgtcgccga gaacatccag gtgccgatca aggaattcta
     1981 ccccaatctg gatcaggcgt tgctggacga gattgccggg ttcaaggtcg tgatgtccgg
     2041 cctgccggcc gacgccgggc ccaaatatcc ggccgagctg tcggggggca tgcgcaagcg
     2101 cgccggcctg gctcgcgcgc tcgcgatcga tcccgagctc ctgttcctcg acgagcccac
     2161 ggccgggctc gacccgatcg gcgccgcgcg cttcgacgag ctgacggcaa gcctgcaaaa
     2221 gacgcttggc ctcacggttt ttctgatcac gcacgacctc gacacgctct atgcgatctg
     2281 cgaccgggtg gcggtgttgg cggacaagcg cgtgatcgcg gtcggaacga tcccggaact
     2341 attggcattg gatcacccgt ggattcagga ctatttcaag ggcccgcgcg ggcggatggc
     2401 ggcgctgacc gaagagcggc ggcaacaggc tgaggaagcg cattgatgga aacccgctcg
     2461 aaccatattc tggtcggatc ggtggtgctg atcctgctcg ccgcgaccgc gattttcacc
     2521 gtctggctgg cgcgcgtctc ggacaccaac cagaaggttt acgacgtctt cttcaaacag
     2581 tccgtcgagg ggctcgcgaa gggatcgagc gtcagctacc gcggcgtgcc cgtgggccag
     2641 gtccaggaca tcaagatctg gaaggacgat ccgaatttcg tccgcgtccg catttcggtg
     2701 ggcgaggacg tgccggtcct tgtcggcacc accgcttcgc tccagggcag cttcaccggc
     2761 gtgtcgacca tgttgctgca aggcgcgcaa aagggcgcgc cgccgatcac agatatcggc
     2821 ccggccggcg cgccggtcat cccgacccag tcgagcggcc tcggcgccct gctcaacagc
     2881 gcgccgcagc tgatggaacg gctatcgacg ctgaccgaac ggctcaccct gctgctgtcc
     2941 gaccagaacc agcgctcgtt cacgcacatt ctcagcaatg tggaccggct gagcgccagc
     3001 ctggccgatc gcggaacgga catccgcgcg acgctcgcgg agacgcgcgt cgcggtgaag
     3061 caagccggcg atgcggccga acaaatcggc aagctcgccg gcacgaccaa ccagctgctc
     3121 gacgaacagg gccggccgtt gctcgccgat ctgcgccaga ctgttgcgcg cgcgcgcacc
     3181 agcatggaca atctcgacgc cataatgacc gacgcacggc ccggcgtgca ggccttctcc
     3241 aagcaaacgc ttcccgaagt cggcctgctc gtgcgcgacc tgcgcgacat ggccgcggcg
     3301 ctgagcggtg tcgccgataa gatcaatcag ggcggcgcca gctcgctggt cggcagccgc
     3361 aagcttcccg actatcagcc gaaatgaggc cgaacatgcg cataacaacg cccttggcga
     3421 tcgccctcgc gataagcctg tcaggctgca tcagcttcgg tgcaaagccg ccaaagcaac
     3481 tgctgacgct cactgccgcg cagacgctcc cgcccggcgc cgcgcgcacg gtgagcccgg
     3541 gcgacgcgat cacggtgctg tggcccggcg ttcccgccga gctcgctacc aaccgcgtcc
     3601 cc
//
LOCUS       DASQVK010000253         3781 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_269531,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000253 DASQVK010000000
VERSION     DASQVK010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3781
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269531"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..953
                     /locus_tag="VE567_05435"
     CDS             <1..953
                     /locus_tag="VE567_05435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020818400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HYZ48321.1"
                     /translation="LVRADVRNGDAVMKALQGVDSVIHLAAEVGVGQSMYAVERYTSV
                     NDLGTAVLFEKLIENPVRRVVAASSMSIYGEGLYRDADGQLVENAERGQTASGNGGWD
                     PLDARGRPLTPVATPEWKRPNLASIYALNKYVQERTTLILSPPYGIEGVCLRLFNVYG
                     PGQALSNPYTGVLAIFASRLLNDQPPLIFEDGEQRRDFVYVGDVARAFADALELPGLS
                     GEVFNIGSGQDRSVTEVATELARAMGKEIAPEIVGKARIGDIRHCFCDTSKAAERLGF
                     RAAQDFGEGLAELAEWVAEQTAVDRVEQARAELEARGLVA"
     gene            950..2008
                     /locus_tag="VE567_05440"
     CDS             950..2008
                     /locus_tag="VE567_05440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYZ48322.1"
                     /translation="MSGPVLVTGGAGFIGCNLADRLARQGHDVIILDALARAGVEANL
                     DWLKQRHGSRIHAIIADIRDEEALAKGVRDVSAVFHMAAQVAVTTSLADPLDDFDINI
                     RGTLAVLEAVRRRADKVPVIFASTNKVYGDLADIALWEETDCWTPADPEVRAHGISEA
                     RPLDFHTPYGCSKGAADQYVLDYARSYGVPTAVIRMSCIYGPRQMGTEDQGWVAHFLI
                     RALEGRPITIYGDGKQVRDVLHIDDAVDTYLSALRLIDSVQGRVFNLGGGPDNAISLR
                     QLLRHIEALIGRPVETLHEDWRAGDQRYFVADARSAQEVLGLAAPKPWRQGIAELAEW
                     LAEARGLELRAAHMEAAE"
     gene            2005..3099
                     /locus_tag="VE567_05445"
     CDS             2005..3099
                     /locus_tag="VE567_05445"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYZ48323.1"
                     /translation="MTRLLITTDTVGGVWQYATDLAAALAPQGFEPILVTLGPRPSAA
                     QKADLAPGVELVETDLPLDWLAETRHDVMAAGQALTRLAEMLRADIVQLNAPAFAAGP
                     RFGCPVVAVAHSCVGTWWQAVKGGEIDADLAWRAALTGAGLRAADRVVAPSAAFSAML
                     RHCYDLPDAPLVVRNGRRVRAAVARAQEDFAFTAGRLWDAGKNVAVLDRAAAMIPVPL
                     KAAGPAAGPHGAYVSFDRVAPLGLLDDAALAQILAARPVFLSASIYEPFGLAVLEAAQ
                     AGCALILSDIPTFRELWDGAARFVYPHDAAGFARAIEDIVGDAALRARLGEAAQARAA
                     DYAVERMAAEMATLYRALVADAAAGERAAA"
     gene            3096..>3781
                     /locus_tag="VE567_05450"
     CDS             3096..>3781
                     /locus_tag="VE567_05450"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007684638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYZ48324.1"
                     /translation="MRIAYFTHSLASCWNHGNAHFLRGVLRELQALGHEVQAFEPDGA
                     WSLKNLLADHGPAGLEAWRASYPELRSTVFTREDDPAELVDGADLVIVHEWNEPELVA
                     ALGTARARGGRFTLLFHDTHHRAVSEPEAMRAYDLSAYDGVLAFGEALAEVYRRWGWG
                     DRVFVWHEAADTRLFHPPAEEGARDGLVWIGNWGDGERTSELEAFLLEPAEAAALPLD
                     IHGVRYPPEAL"
BASE COUNT          567 a         1240 c         1364 g          610 t
ORIGIN      
        1 agctggtgcg cgcggacgtg cgcaatggcg atgcggtcat gaaggcgctg cagggcgtcg
       61 acagcgtcat ccacctcgcg gccgaagtgg gcgtcggcca gtcgatgtac gcggtcgagc
      121 gctacacctc ggtcaacgat ctcggcaccg ccgtgctgtt cgaaaagctg atcgaaaatc
      181 ccgtccgccg cgtcgtcgcc gcttcgtcca tgagcatcta tggcgagggc ctttaccgcg
      241 acgccgacgg ccagctcgtc gagaatgccg agcgtgggca gaccgccagc ggcaatggcg
      301 gctgggatcc gctggatgcc cggggccggc cgctgacccc ggtcgccacg cccgaatgga
      361 agcggcccaa cctcgcctcc atctatgcgc tcaacaaata tgtgcaggag cggaccacgc
      421 tgatcctgtc gccgccctat ggcatcgaag gcgtgtgcct gaggctgttc aacgtctatg
      481 gcccgggcca ggcgctgtcg aacccctata cgggggtcct tgcgatcttc gcctcgcgcc
      541 tgctgaacga ccagccgccg ctgatcttcg aggatggcga gcagcgccgg gactttgttt
      601 atgtgggcga tgtggcgcgc gcctttgcgg acgcgctgga attgcctggc ctatccggcg
      661 aagtgttcaa catcggctcg gggcaggacc ggtcggtgac cgaagtcgcg accgaacttg
      721 cccgcgcgat gggcaaggag atcgcgcctg aaattgtcgg caaggcgcgg atcggcgaca
      781 ttcgccattg tttctgcgac acctccaagg ccgccgagcg cctcggcttc cgggctgcgc
      841 aggatttcgg cgaaggcctg gccgagcttg ccgaatgggt ggcggagcag accgcggtcg
      901 accgggtcga gcaagccagg gccgaactcg aggcgcgagg gctcgtcgca tgagcggacc
      961 ggtccttgtc accgggggcg ctggattcat cggctgcaac ctcgccgacc ggctcgcccg
     1021 ccaaggccat gacgtcatca tcctcgacgc gctcgcccgc gccggggtcg aggccaatct
     1081 ggactggctg aagcagcgcc acggctcccg gatccacgcg atcatcgccg atatccgcga
     1141 cgaggaggcc ctcgccaaag gcgtgcgcga cgtgtccgcc gtgttccaca tggcggcgca
     1201 agtggcggtc accaccagcc tcgccgatcc gctcgacgat ttcgacatca acatccgcgg
     1261 cacgctggcg gtgctggaag cggtgcgcag gcgcgccgac aaagtgccgg tgatcttcgc
     1321 ttcgaccaac aaggtctatg gcgacctggc cgatatcgcg ctgtgggaag agacggactg
     1381 ctggacaccg gcggacccgg aggtgcgcgc gcacggcatt tcggaagcgc ggccgctcga
     1441 tttccacacg ccctatggct gctccaaggg cgctgcggac caatatgtgc tggattatgc
     1501 gcgcagctac ggcgtgccga ctgccgtcat ccggatgagc tgcatctatg gcccgcgcca
     1561 gatggggacg gaggaccagg gctgggtcgc gcatttcctg atccgcgcgc tcgaaggccg
     1621 gccgatcacc atctatggcg acggcaagca ggtccgcgac gtgctccata tcgacgacgc
     1681 ggtggacacc tacctgtccg cgctgcgcct gatcgactcc gtgcagggcc gcgtgttcaa
     1741 cctgggcggc ggcccggaca atgcgatcag cttgcgccag ctgctccggc acatcgaagc
     1801 gctgatcggc cggccggtcg agaccttgca cgaggattgg cgcgcgggcg accagcgcta
     1861 tttcgtcgcc gatgcgcgat cggcgcagga ggtgctgggg ctcgcagcgc ccaagccgtg
     1921 gcggcaaggc attgccgaac tcgccgaatg gctggccgag gcgcgcgggc tggagctgcg
     1981 cgccgcgcat atggaggcgg ccgagtgacg cggctgctga tcacaaccga tacggtcggc
     2041 ggcgtctggc aatatgcgac ggacctggca gcggctttgg cccctcaggg gttcgaaccg
     2101 atcctggtga cgctgggccc ccgccccagc gcggcgcaga aggcggatct ggcgcccggg
     2161 gtcgagctgg tggagaccga cctgccgctc gattggctgg ccgagacacg gcacgacgtc
     2221 atggcggcgg gacaggcact gacccggctc gccgagatgc tccgcgccga catcgtgcag
     2281 ctcaacgcgc cggcatttgc ggccgggccg cgctttggct gccccgtggt cgctgtcgcg
     2341 catagctgtg tcggcacctg gtggcaggcc gtcaaaggcg gcgagatcga cgccgacctg
     2401 gcctggcgcg ccgcgctaac gggtgcaggg ctgcgcgccg ccgaccgagt ggtggcgccg
     2461 agcgcggcgt tctcagcgat gctccgccac tgctatgatt tgccggacgc gccgctggtc
     2521 gtgcgcaacg gacggcgggt gcgtgcggcg gtggcgcgcg ctcaagagga tttcgctttc
     2581 actgccggac gcttgtggga cgcgggcaag aatgtcgcgg tgctcgaccg ggcggcagcg
     2641 atgatcccgg tgccgctgaa ggctgctgga cccgcggccg ggccacacgg cgcttacgtg
     2701 tcattcgatc gcgtcgcgcc gctcgggctg ctggacgatg ccgcgctggc gcaaatactg
     2761 gcggcgcggc cggtgtttct ctcggcctcc atctatgagc cgttcggcct ggcggtgctg
     2821 gaagcggcgc aggcaggatg cgcgctcatc ctctccgata ttccgacttt ccgcgagctt
     2881 tgggacgggg cggcccgctt cgtctatccg cacgacgcgg ccggctttgc acgtgcgatc
     2941 gaggatatcg tcggcgacgc cgcacttcgc gcgcggttgg gcgaagccgc gcaggcgcgg
     3001 gcggcggact atgccgtcga gcgcatggcg gcggagatgg cgacgctcta ccgcgcgctg
     3061 gttgccgacg cggcggccgg ggagcgggcc gcggcatgag gattgcctat ttcacccact
     3121 cgctcgcgag ttgctggaac cacggcaatg cccatttcct gcgcggcgta ttgcgcgagc
     3181 ttcaggcctt gggccacgag gtgcaggcgt tcgagcccga tggcgcgtgg agcctcaaga
     3241 acctgctcgc cgatcatggg ccggcgggac tggaggcatg gcgcgcctcc tatcccgagc
     3301 tgcgctcgac cgtgttcacg cgcgaggacg atcccgccga actggtcgac ggggcggacc
     3361 tggtgatcgt gcatgagtgg aacgagcccg agctggtcgc ggcgctgggc accgcacggg
     3421 cgcgaggcgg acgcttcact ctgctgttcc acgacacgca tcaccgcgcg gtcagcgagc
     3481 cggaagcgat gcgcgcctat gacctgtccg cctatgacgg cgtgctcgcc ttcggcgagg
     3541 cgctggcgga ggtgtatcgc cgctggggct ggggcgaccg ggtgttcgtg tggcacgagg
     3601 cggccgacac ccggctgttc catccgcctg ccgaagaagg cgcgcgcgac gggctggtct
     3661 ggatcggcaa ttggggcgac ggggagcgga cgtcagagct ggaagcgttc ctgctcgagc
     3721 cggcggaggc ggcggcgctc ccgctcgata tccacggagt gcggtatccg cccgaggcgc
     3781 t
//
LOCUS       DASQVK010000254         4502 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_459273,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000254 DASQVK010000000
VERSION     DASQVK010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4502
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_459273"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1305
                     /locus_tag="VE567_05455"
     CDS             <1..1305
                     /locus_tag="VE567_05455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000028 - ribosomal small subunit assembly
                     [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HYZ48325.1"
                     /translation="DVDVEKERISLGMKQLERGGVAKGAGGASGGVGKGETVTVTVLE
                     ETRAEQRTGLIQSLHEGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDLSYKRVNHPSE
                     VLNIGDTVRVQIIRINRDTQRISLGMKQLESDPWEGAAAKYPIGARFHGRVTNITEYG
                     AFVELEAGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVIVLEVDEEKRRISLGLKQA
                     QQNPWEAFAEQHPVGSTVEGEVKNATEFGLFIGLEGDVDGMVHMSDIAWGISGEDALN
                     LHRKGEMVQAIVLDVDVEKERISLGMKQLERGAPAAGGTAAASSGLKKNEVVTVTVLE
                     VRDGGLEVQAGDSGATGFIKRSDLGRDRDEQRPERYQVGQKFDAMVTGFDRSKKPTFS
                     VKAMQIAEEKQAVAQYGSSDSGASLGDILGAALNKARDQKPK"
     gene            1526..1804
                     /locus_tag="VE567_05460"
     CDS             1526..1804
                     /locus_tag="VE567_05460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HYZ48326.1"
                     /translation="MIRSELVQMLAADNPGLSIKEVDRIVTIFFDEIAQRLADGGRVE
                     LRGFGAFSTRGRDARSGRNPRTGETVAVDAKRVPYFKPGKEMRQRLNV"
     gene            2102..2752
                     /locus_tag="VE567_05465"
     CDS             2102..2752
                     /locus_tag="VE567_05465"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEDS domain-containing protein"
                     /protein_id="HYZ48327.1"
                     /translation="MPPNLPNGRSESGHGVTDSGINPVGIISWGTHFCSFYENINDHL
                     DTVAAYFRSGVLRHEACLWIAAPPLKKDRAIEDLSRWDPLLSDAIKDRAIEVADWDEW
                     YIALGQFDPERVIRGWDQRLSAALDHGHAGLRVAANEAWLTYNLKRRFCCYERSLNRS
                     LGDKNIVIMCCYPTSGSTAADVFDVAATHQFALAHRHGAWEVMEVTDHVGAVASER"
     gene            complement(2989..3750)
                     /locus_tag="VE567_05470"
     CDS             complement(2989..3750)
                     /locus_tag="VE567_05470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYZ48328.1"
                     /translation="MNVPGVLAIYKFEMHRFARTSSTGLAVPVITTSLYFIVFGSAIG
                     SRMSEIGGVPYGSFIVPGLMMLSLFTESIFNASFGIHMPRFTGTIYEILSAPLSPFET
                     VLGYVGAAMTKAVTVALVILITANLFVPVRIEYPLAMIAFLLLVAATFCLFGFIIGIW
                     AKGFEQLQVIPLLIVTPMTFLGGAFYSIDMLPDPWRTVTLFNPVVYLISAFRWTFSGT
                     SDVAVGLSFAITLAIFLLCLGVVAWIFRTGYRLKS"
     gene            complement(3747..>4502)
                     /locus_tag="VE567_05475"
     CDS             complement(3747..>4502)
                     /locus_tag="VE567_05475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009821289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYZ48329.1"
                     /translation="GRIVVDGHDIVADYRAARSLIGLVPQELTTDAFETVWDTVSFSR
                     GLFGKARDPALIERVLKQLSLWDKRATRIKELSGGMKRRVMIAKALSHEPTVLFLDEP
                     SAGVDVELRRGMWDMVRELKAQGVTIILTTHYIEEAEEMADRVGVINHGELILVEETR
                     ALMAKLGKRELTLKLTEPLAAIPPGLGEWELALRDDGNELLYSFDAKAERTGIASLIR
                     QLTDLGIGFKDLATRESSLEDIFVTLVHDRRAA"
BASE COUNT          928 a         1377 c         1450 g          747 t
ORIGIN      
        1 gacgtcgacg tcgagaagga gcgcatcagc ctcggcatga agcagctcga gcgcggcggc
       61 gtcgccaagg gcgccggcgg ggcttcgggc ggcgtcggca agggcgagac ggtcaccgtg
      121 accgtgctcg aagagacccg cgccgagcag cgcaccggcc tcatccagtc gctgcacgaa
      181 ggccaggtga tcgacggcgt cgtcaagaac atcaccgatt acggcgcgtt cgtggacctg
      241 ggcggcatcg acggcctgct ccacgtcacc gacctcagct acaagcgggt caaccacccg
      301 tccgaggtgc tgaacatcgg cgacacggtg cgcgtgcaga tcatccgcat caaccgcgac
      361 acccagcgca tttcgctcgg catgaagcag ctcgagagcg atccgtggga aggcgccgcc
      421 gccaagtacc cgatcggcgc ccgtttccat ggccgcgtga ccaacatcac cgaatatggc
      481 gcgttcgtgg agcttgaagc cggcatcgaa ggcctggtcc atgtttccga aatgagctgg
      541 accaagaaga acgtccaccc gggcaagatc gtctcgacca gccaggaagt cgatgtgatc
      601 gtgctcgagg tcgacgagga gaagcggcgc atttcgcttg gtctcaagca ggcccagcag
      661 aatccctggg aagcctttgc cgagcagcac ccggtcggct cgaccgtgga aggcgaagtc
      721 aagaacgcaa ccgagttcgg cctcttcatc ggcctcgaag gcgatgtgga cggcatggtc
      781 catatgtcgg acatcgcctg gggcatttcc ggcgaagatg cgctcaacct gcaccgcaag
      841 ggcgagatgg tgcaggccat cgtgctcgac gtcgatgtcg agaaggagcg catctccctc
      901 ggcatgaagc agctcgagcg cggtgcgcct gccgccggcg gcacggctgc ggcgagcagc
      961 gggctcaaga agaacgaggt cgtcaccgtg acggtgctgg aagtccgcga cggggggctg
     1021 gaagtccagg ccggcgacag cggcgcgacc ggcttcatca agcgctccga ccttggccgc
     1081 gaccgcgacg agcagcggcc ggagcgttac caggtcggcc agaagttcga cgcgatggtg
     1141 accggcttcg accgttccaa gaagccgacc ttctcggtca aggcgatgca gatcgccgaa
     1201 gagaagcagg cggtcgcgca gtacgggtcg tccgactcgg gcgccagcct gggcgacatt
     1261 ctgggcgccg cgctcaacaa ggcgcgcgac cagaagccga agtaaagaca gttgctggat
     1321 aaaacccgtc accgcgcgca ggcgaggtgg cgggtttttc caatccgact cgcgcaacgc
     1381 acagcgttgc gctatgttgg aatacgtagt tgcgtatcga gcgacggaag cggtctgggg
     1441 aggccgctac attatgtggg ggccagcgcc cgggcagtct cccgggcggc ggtcgatcaa
     1501 gaccagcctg ctggaaagga ataacatgat ccggtccgaa ctcgtccaga tgctcgccgc
     1561 ggacaatccc ggcctgtcca tcaaggaggt cgacaggatc gtgaccatct tcttcgacga
     1621 gatcgcgcag cggctggccg atggcgggcg tgtcgagctg cgcggcttcg gcgctttctc
     1681 cacccgcggc cgcgacgccc gcagcggccg caatccgcgc accggcgaaa ccgtcgccgt
     1741 ggacgccaag cgcgtcccct atttcaagcc cggcaaggaa atgcgccagc gcctgaacgt
     1801 gtgatcgcgg cgccgggctc aaaaacggct aagtccgttt gagctcgggc cgggtgattg
     1861 cctgagagaa gcgtcgaaga tagccgtgct gtatagctgg tgtcggcgga atgtggacgc
     1921 ctagttattg cctgcacctc aatatcggca gctcccagaa acactttcca gaaaagaccc
     1981 cgggaacctt cctctcgggc agagagtttt tgattagggt cggaagagct tagaacatcg
     2041 ctcgatatca cattcagcat ggcaaataat gccatcctga caatgattgg ttgctgaccc
     2101 gatgccacca aatctcccaa atggacgctc tgaaagtggg cacggagtaa ctgactccgg
     2161 catcaatcct gtcggcatta tctcctgggg aacccatttc tgtagtttct acgagaatat
     2221 aaacgaccat ttggatactg ttgcagctta tttccgctct ggagtgctac gacatgaggc
     2281 ctgcttatgg atcgccgcgc ctccgctaaa gaaagaccgc gcgatcgagg atctgagccg
     2341 ctgggaccca cttctaagcg atgcgatcaa ggatcgggcg atcgaagtcg ctgactggga
     2401 cgagtggtac atcgccctcg gccaattcga tccggagcgt gttattcggg gctgggatca
     2461 gcggctgagc gccgcgctcg accacggtca tgcggggctg cgggtcgcgg caaacgaagc
     2521 ctggctcaca tataatctga agcgtcgctt ctgctgctac gaacggagcc tcaatcgctc
     2581 cctcggagac aagaatatcg tcataatgtg ctgctatcca acaagtggct caacggctgc
     2641 agacgtgttc gacgtcgccg caacgcacca attcgccctc gcccaccgcc atggcgcttg
     2701 ggaagtgatg gaagtcaccg accatgtggg ggcggtcgcg agcgagcgct gaatgcgaat
     2761 ctgaggagcg cgatcgagga acggaccaaa tgactggcgg ccaccgagga ggctttcgcc
     2821 gccgcattct tcggtttggc ggggacgcga cggcacgcat gatgcgcaag acgttgttcc
     2881 gagatcactg cccgcaatgc tgctatgggc caagcgcgtc ccgttcgaag ccgatccggc
     2941 aatgatcgct tcggcgcagc gagcagaact ccgcgcgaac catcgccctc agctcttcag
     3001 gcgatagccg gtccggaaaa tccacgccac cacgcccagg cacagcagga aaatcgcgag
     3061 cgtgatcgcg aagctgaggc ccaccgcgac gtccgaggtg ccggagaagg tccagcggaa
     3121 ggcgctgatc aggtacacga cgggattgaa gagcgtcacc gtccgccagg ggtcggggag
     3181 catgtcgatc gagtaaaagg cgccgcccag gaacgtcatc ggcgtgacga tcaggagcgg
     3241 gatgacctgc agttgctcga accccttggc ccagatgccg atgatgaagc cgaacaggca
     3301 gaaggtcgcg gcgaccagca gcaggaacgc gatcatcgcc agcggatatt cgatccgcac
     3361 gggcacgaac agattggcgg taatgaggat gacgagggcc accgtcaccg ccttggtcat
     3421 cgccgcgccg acatagccga gcaccgtctc gaacgggctc aagggtgccg acaggatctc
     3481 gtagatggtg ccggtgaagc gcggcatatg gatgccgaac gaggcgttga aaatgctttc
     3541 ggtgaacagc gacagcatca tcagccccgg cacgatgaac gaaccatagg gaacgccgcc
     3601 gatctcgctc atgcgcgagc cgatagccga cccgaacacg atgaaataaa gcgaggtggt
     3661 gatgaccggc accgcaaggc cggtcgacga ggtccgcgcg aagcggtgca tctcgaattt
     3721 gtagatggcg agcacgccgg gcacgttcat gccgccctcc gatcgtggac aagagtgaca
     3781 aaaatatcct cgagcgagct ttcgcgagtc gccagatcct tgaagccgat gccgagatcc
     3841 gtcagctgcc ggatcagcga ggcgatgccc gtccgctccg ccttcgcgtc gaagctgtag
     3901 agcagctcgt tgccgtcgtc gcgcagtgca agctcccatt cgcccagccc aggagggatc
     3961 gcggcaagcg gttccgtcag cttcagcgtc agctcgcgct tgccgagctt ggccatcagc
     4021 gcgcgtgttt cctcgaccag gatcagctcg ccatgattga tgacgcccac ccggtcggcc
     4081 atttcctcgg cctcttcgat atagtgggtg gtgaggatga tggtgacgcc ctgcgccttc
     4141 agctcccgca ccatgtccca catgccgcgc ctgagctcga catcgacgcc ggcgctgggc
     4201 tcgtccagga acagaacggt gggttcgtgc gagagcgcct tggcgatcat aacgcggcgc
     4261 ttcatgccgc ccgacagctc cttgatgcgg gtggcgcgct tgtcccacaa ggagagttgc
     4321 ttcaggacgc gctcgataag ggccggatcg cgggctttgc cgaacaagcc gcggctgaag
     4381 ctcaccgtgt cccaaacggt ctcgaacgcg tcggtcgtga gctcctgggg cacgagcccg
     4441 atgagcgagc gcgcggcgcg atagtccgca acgatgtcgt ggccgtcgac gacgatgcgc
     4501 cc
//
LOCUS       DASQVK010000255         2729 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_237595,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000255 DASQVK010000000
VERSION     DASQVK010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2729
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237595"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1301)
                     /locus_tag="VE567_05480"
     CDS             complement(<1..1301)
                     /locus_tag="VE567_05480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HYZ48330.1"
                     /translation="MIKALLLASLALSPIAALAQTPPMAPDTVPVYERVRPQADYIRR
                     EAMIPMRDGVKLFTVIVMKKGTRNGPILLTRTPYNADATTWRNPSQKIVEILPVSDKE
                     FVEDGYIRVYQDVRGLHKSEGDYVMNRPLRGPLNHTPVDHATDAYDTIDWLVKNVPET
                     NGRVAVTGSSYPGFTSTMALIDPHPALKAAVPMSPMVDGWMGDDWFHNGAFRMPSFDY
                     FTGQMAKENDGQVPYGLGDDYEIFLNAGSAGDYARAFGLDAFAVTRKFLEHPAYDSYW
                     QNQAVDKLLGARKLTVPTMLVVGQWDQEDSYGAPAVYRALEPQDKNNDMVSLVIGPWR
                     HSGVNYEARELGSVKVEGDTGLQFRRDYMKPFLDRYLKDGAPQTPTPPVLTYATGANK
                     WQVSPAWPMGKMTPVYLQKSFGLAWTKPAAGADTYVSDPANP"
     gene            1526..2005
                     /gene="rplM"
                     /locus_tag="VE567_05485"
     CDS             1526..2005
                     /gene="rplM"
                     /locus_tag="VE567_05485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014078166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HYZ48331.1"
                     /translation="MKALMKTTKSATPATVEKKWHLIDADGLVVGRLASIIANILRGK
                     HKPSFTPHIDCGDNVIVINAEKVKFTGRKLTQKVYYKHTGYPGGLKEYRADKVLEGRF
                     PERVLEKAVERMIPRGPLGRQQMRNLRIFAGPEHDHVAQNPEVLDVASMNRKNKVGA"
     gene            2005..2523
                     /gene="rpsI"
                     /locus_tag="VE567_05490"
     CDS             2005..2523
                     /gene="rpsI"
                     /locus_tag="VE567_05490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009821314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HYZ48332.1"
                     /translation="MSDTRQSLSDLGALAEGLQPAVPAGETPAVARPSAPLREQQLDK
                     YGRAYATGRRKDAVARVWLKPGSGKIVVNGRDQEVYFARPTLRLVINQPFDVAERRDQ
                     YDVIATVKGGGLSGQAGAVKHGIAQALSRYEPALRSAVKAAGFLTRDPRVVERKKYGR
                     AKARRSFQFSKR"
BASE COUNT          486 a          880 c          883 g          480 t
ORIGIN      
        1 ggattggccg ggtccgatac ataagtgtcg gcgccggcgg ccggcttcgt ccaggcgagg
       61 ccgaagctct tctgcagata gaccggcgtc atcttgccca tcggccaggc cgggctgacc
      121 tgccatttgt tcgcgccggt cgcgtaagtg agcacgggcg gagtcggcgt ctgcggggcg
      181 ccgtccttca aatagcggtc gagaaacggc ttcatgtaat cgcggcggaa ctgcaggccg
      241 gtatcgccct cgaccttgac gctccccaac tcgcgcgcct cgtaattgac gccgctgtgc
      301 cgccaggggc cgatcaccag cgacaccatg tcgttattct tgtcctgagg ctcgagcgcg
      361 cgatagacgg ccggcgcgcc atagctgtct tcctggtccc attggccgac gaccagcatc
      421 gtcgggacgg tcagcttgcg ggcacccagc aatttgtcga ccgcctgatt ctgccaatag
      481 ctgtcatagg ccgggtgctc gaggaacttg cgagtgacgg cgaaggcgtc gaggccgaaa
      541 gcgcgcgcat aatcgcccgc cgaaccggcg ttcaggaaaa tctcgtagtc gtcgcccagg
      601 ccataaggga cctggccgtc attctctttc gccatctggc cggtgaaata gtcgaagctc
      661 ggcatgcgga aggcgccgtt gtggaaccag tcgtcgccca tccagccatc gaccatgggg
      721 ctcatcggca ctgccgcttt cagcgccgga tgcggatcga tcagcgccat ggtcgaagtg
      781 aagccgggat aggaggagcc ggtcaccgcc acgcggccgt tcgtctccgg cacattcttc
      841 accagccagt cgatcgtgtc ataggcgtcc gtggcgtggt cgacgggcgt gtggttgagc
      901 ggcccgcgca gcggccggtt catcacataa tcgccttcgg acttatgcag cccgcgcacg
      961 tcctgataga cgcggatata gccatcctcg acgaattcct tgtcggaaac cgggaggatt
     1021 tcgacgatct tctggctcgg attccgccac gtggtcgcat cggcgttgta gggcgtgcgg
     1081 gtgagcagga tcgggccgtt ccgcgtcccc ttcttcatga cgatcacggt gaacagcttc
     1141 accccgtcgc gcatcgggat catcgcctcg cggcggatat agtcggcctg gggccgcaca
     1201 cgctcataaa cgggcacggt gtcgggcgcc atcgggggcg tctgggcgag agcggcgatg
     1261 ggggaaaggg cgagcgaggc gagcagcagg gctttgatca tgcggcttta tgacggctcg
     1321 cgcgcgcgag cgccacaccc atgtgatatt aaatcatcgc gcgggcggat aagaacggct
     1381 tttgccgcga aaagcttcag gtattatttt acctgtcacg aatcgccccg ttttgcttga
     1441 ctttcgcgcc ctgccgacgc aaacgcccag ccagcagcgc cgccccgtgt cgggcggcgt
     1501 cgttcgtttc tagccagagg tagccatgaa ggcgctcatg aagacgacca agtcggcgac
     1561 gccggcgacg gtcgagaaga aatggcatct gatcgatgcc gacggcctgg tggtcgggcg
     1621 gctcgcctcg atcatcgcca acatcctgcg cggcaagcac aagccgagct tcacccccca
     1681 tatcgattgc ggcgacaatg tcatcgtgat caatgccgaa aaggtgaagt tcaccggccg
     1741 caagctcacg cagaaagtct attacaagca caccggctat cccggcggcc tgaaggaata
     1801 tcgtgccgac aaggtgctcg agggccgttt ccccgagcgc gtgctcgaga aggccgtgga
     1861 gcggatgatc ccgcgcgggc cgctcggccg gcagcagatg cgcaacctgc gcatcttcgc
     1921 ggggcccgag catgaccacg tggcccagaa ccccgaggtg ctcgacgtcg cctcgatgaa
     1981 ccgcaagaac aaggtgggcg cataatgtcc gacacgcgtc agtccctttc cgacctcggc
     2041 gccctggccg agggcctcca gcccgccgtt ccggccggcg agactcctgc agtggctcgg
     2101 ccgtccgcgc cgctccgcga gcagcagctc gacaaatatg gccgcgccta tgcgaccggc
     2161 cgccgcaagg acgccgtcgc ccgcgtctgg ctgaagccgg gcagcggcaa gatcgtggtc
     2221 aatggccgcg atcaggaagt ctatttcgcc cggccgacgc tgaggctcgt catcaaccag
     2281 ccgttcgacg ttgccgaacg tcgcgatcaa tatgacgtga tcgcaaccgt gaagggcggc
     2341 gggctttcgg gccaggcggg tgcggtcaag cacggcattg cccaggcgct cagccgctac
     2401 gagccggcgc tgcgctcggc cgtgaaggct gccggcttcc tgacccgcga cccgcgcgtc
     2461 gtggagcgca agaagtacgg ccgcgccaag gctcgccgca gcttccagtt ctcgaagcgc
     2521 taagccttac ggcctttgca aacacgaagg gcggtcccga tcggggccgc ccttttcgtt
     2581 tacgcgggag acaggctgga gggattgggg cttgacccag ccaatccgca gtccgacgat
     2641 cttcccttcg actcacagac gcgcgcaggc ccgcgtctcc ttcgtgggtc tgcctcgcag
     2701 gcagacggag gagacgttca tgcccggaa
//
LOCUS       DASQVK010000256         3100 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_301008,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000256 DASQVK010000000
VERSION     DASQVK010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3100
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301008"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            290..3034
                     /gene="polA"
                     /locus_tag="VE567_05495"
     CDS             290..3034
                     /gene="polA"
                     /locus_tag="VE567_05495"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010214457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HYZ48333.1"
                     /translation="MPHLYLVDGSGYIFRAYHRLPPLTNIRGEPVGAVYGYTTMLWKL
                     AEELNKADGPTHLAVIFDHSAKSFRNDMYDQYKAHRPPPPEDLVPQFPMIRDATRAFS
                     LPCLEEEGVEADDLIASYTKAALAQGWQVTIVSSDKDLMQLIEPGLDLYDTMNNRRLG
                     PEHVVEKFGVPPSQLGEVLALMGDAVDNVPGVPGVGPKTASKLILEHGSLEAVLAAAP
                     SMKPGKLRDNLIEHAEKARLSRELVKLKCDVPLVHPLEEMELQGIPEPPLRAFLEHHG
                     FKSLLMRLGQVADEVPEPQDRIELPPDPPCNHDGYETVLTLEDLDRWIAAATAQGFVA
                     VDTETDSKDQMHAGLVGVSLALEPNKACYIPLAHGGGDLLGGDFPAQIPFGEAITRLK
                     PLLEDPAVLKIGHNIKFDMCVLARHGIRIAPYDDTIVISFDLEAGLHGHGMDELAATH
                     LNHSCIAFKDVVGTGKTQLGFHQVDLKSATHYAAEDADVTLRLWRRLKPRLSAENATT
                     VYELVDRPLIPVIGAMERAGIKVDRERLSRLSGEFAQQIGAIEADVYELAGQPFTIGS
                     PKQLGDILFEKMGLKGGRKGKTGVYSTDVNELERLAADGVEIARRVLDWRQLSKLKST
                     YTDALQQEISPDTGRVHTCYSLTGAQTGRLASTEPNLQNIPIRTEVGRQIRDAFVAEP
                     GNVILSADYSQIELRIAAHMADVPQLRDAFAAGADIHALTATELFGEVNRDTRGRAKT
                     INFAILYGISRWGLAGRLGVTADEAQAMIDRYFERFPGINRYIAETLTSVRERSYTTT
                     LFGRKTHFPRIKSKVQHERQGAERAAINAPIQGTSADIIKRAMVKMGPALAKAGLANV
                     RMLLQVHDELVFELPASDVDAAAAVIRDVMAQAAEPAVKLSVPLGVEIGHGLSWGAAH
                     "
BASE COUNT          577 a         1017 c         1009 g          497 t
ORIGIN      
        1 acctgctctg gtcccggctt cggcaccggc acttgctcga cttccacgcg ccccggcccg
       61 gtcagcaccg ccgcgcgcat catgtgattc gccaagaacg tctcccgcag atggccgccc
      121 gcgaagacgc gcggggcggg cgatctgttc cgtggacgga atggctgaac gcgtggaatt
      181 aatggccgaa gaagaatccg ttcgctcgaa acgaacggag acaggaggac gagagaggca
      241 gtcaagcgag tcactggcgt cgccagcgcc gccccgctat ctcgccctca tgcctcatct
      301 ctacctcgtc gacgggtccg gctatatctt ccgcgcctat caccggctgc cgccgctgac
      361 caatatccgc ggcgagccgg tcggcgccgt ctatggctat acgacgatgc tgtggaagct
      421 cgccgaggag ctgaacaagg ccgatggccc cacgcatctg gcggtgatct tcgaccatag
      481 cgccaagtcg ttccgcaacg acatgtacga tcagtacaag gcgcaccgcc cgccgccgcc
      541 ggaggatctg gtgccgcaat tcccgatgat ccgggacgcg acccgcgctt tctcgctgcc
      601 gtgcctggaa gaggaagggg tcgaggcgga cgacctgatc gcgtcctaca ccaaggcggc
      661 gctcgcccag ggctggcagg tcacgatcgt ctcctccgac aaggatttga tgcagttaat
      721 tgagccgggc ctcgacctct acgacacgat gaacaaccgg cggcttggcc ccgagcatgt
      781 ggtcgagaaa ttcggcgtgc ccccgtcaca gctcggcgaa gtgttggcgc tgatgggcga
      841 cgccgtcgac aatgtgccgg gcgtgccggg cgttggcccc aagacggcgt cgaagctgat
      901 cctggaacat ggctcgctcg aagccgtgct ggctgccgcc ccctcgatga agccgggcaa
      961 gctgcgcgac aatctgatcg agcatgccga aaaagcgcgc ctctcgcgcg agctggtgaa
     1021 gctcaaatgc gacgtgccgc tcgtgcatcc gctcgaggag atggagctgc agggcattcc
     1081 cgagccgccc ttgcgcgctt tcctggagca tcacggcttc aagtcgctgc tgatgcggct
     1141 gggtcaggtg gcggacgaag taccggagcc gcaggaccgc atcgagctgc cgcccgatcc
     1201 gccgtgcaat cacgacggct acgaaaccgt gctcacgctc gaagatctcg accgctggat
     1261 cgcggccgcc acggcccagg gtttcgtcgc ggtcgatacc gagaccgaca gcaaggacca
     1321 gatgcatgcc ggcctggtcg gcgtcagcct cgcgctcgaa cccaacaagg cctgctacat
     1381 cccgctcgcg catggcgggg gcgatctgct cggcggggat ttcccggcgc aaatcccgtt
     1441 tggcgaagcg atcacacggc tgaagccgct gctcgaagac ccggcggtcc tgaagatcgg
     1501 gcacaatatc aagttcgaca tgtgcgtgct ggcccggcac gggatccgta tcgcgcccta
     1561 tgacgatacg atcgtcatca gcttcgatct cgaggcgggc ctgcatgggc acggcatgga
     1621 cgagctggcc gccacccacc tcaaccatag ctgcatcgcg ttcaaggatg tggtgggcac
     1681 aggcaagacg cagctcggct tccaccaagt ggatctcaaa tccgcaacgc actatgcggc
     1741 cgaagacgcc gatgtgacgt tgaggctctg gcggcgcctg aagccgaggc tgtccgcgga
     1801 gaacgcgacc actgtctatg aactggtcga ccgcccgctg attccggtga tcggcgcgat
     1861 ggagcgggcg ggcatcaagg tcgatcgcga gcggttgtcg cgcctctcgg gcgaattcgc
     1921 ccagcagatc ggggcgatcg aggccgatgt ttacgaactg gccggccagc ccttcaccat
     1981 cggcagcccc aagcagctcg gcgacatcct cttcgagaaa atgggcctca agggcgggcg
     2041 caagggcaag accggcgtct attcgaccga cgtgaacgag ctcgagcggc tcgccgcaga
     2101 cggcgtcgag atcgcgcggc gggtgctcga ttggcggcag ctctccaagc tcaaatcgac
     2161 ctataccgac gcgctgcagc aggagatcag ccccgatacg ggccgggtcc acacctgcta
     2221 ttcgctgacc ggcgcgcaga cgggccggct ggcctcgacc gagcccaatc tgcagaacat
     2281 cccgatccgc accgaagtcg ggcggcagat ccgcgacgct ttcgtcgccg agccgggcaa
     2341 tgtgatcctg tccgcggact atagccagat cgagctgcgc attgccgccc atatggcgga
     2401 tgtgccgcag cttcgcgatg ccttcgccgc cggcgcggac attcacgcgc tgaccgcgac
     2461 cgagctgttc ggcgaagtga accgcgatac gcgcgggcgc gccaagacga tcaatttcgc
     2521 gatcctttac ggcatttccc gctggggtct ggcggggcgg ctcggcgtca cggccgacga
     2581 ggcgcaggcg atgatcgacc gctatttcga acgcttcccc ggcatcaacc gctatatcgc
     2641 cgagacgctc acctcggtgc gcgagcgcag ctatacgacc actttgttcg gtcggaagac
     2701 gcatttcccc cgcatcaagt ccaaggtgca gcatgagcgc cagggcgccg agcgcgcggc
     2761 gattaacgcg ccgatccagg gcaccagcgc ggacattatc aagcgcgcaa tggtgaagat
     2821 gggcccggcg ctggcgaaag ccgggctggc caatgtccgc atgctgctgc aggtgcatga
     2881 cgagctcgtc ttcgagctgc ccgcaagcga cgttgacgcc gcagccgcgg tgatccgcga
     2941 cgtcatggcc caggcggcgg agccggcggt gaagctcagc gtgcccttgg gagtcgaaat
     3001 cggtcacggc ctaagctggg gcgcggcaca ctaaggttat aggcgctggc cgcgaacacc
     3061 gttaagcaaa gcgcgatggg gcacagcgag gctgcgggca
//
LOCUS       DASQVK010000257         4993 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_174270,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000257 DASQVK010000000
VERSION     DASQVK010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4993)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4993)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4993
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174270"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..682)
                     /locus_tag="VE567_05500"
     CDS             complement(<1..682)
                     /locus_tag="VE567_05500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010408484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48334.1"
                     /translation="MKEGRRDHGPLFVGTIFLGSFLLFLVQPMIARMVLPRLGGAPAV
                     WNSAMLVYQALLLAGYAYAHALARFSVRTQSAVQLVLLAAAALLLPIGLIDGNLSAAA
                     SPVLWVPWLLLLSIGPLFFAVSAQAPLIQRWYAAATGGRDPYPLYAASNLGSFAGLLS
                     YPLLVEPRMTVAAQSTLWTLGYAMLVVMTLACAAVLPRAGLDTSDAGLVTERPPTLRQ
                     RLWWVLLAF"
     gene            complement(802..1797)
                     /gene="hemB"
                     /locus_tag="VE567_05505"
     CDS             complement(802..1797)
                     /gene="hemB"
                     /locus_tag="VE567_05505"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013040376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HYZ48335.1"
                     /translation="MHNAAFPALRLRRTRASAWSRALHAENVLTPADLIWPLFIVEGE
                     GVEQPVATMPGVSRWSVDRIVDRAREARDLGIPCLALFPNTPEALRTDDGREALNPDN
                     LMCRASRAIKDAVPEVGILTDVALDPYTAHGHDGLIDASGYVLNDPTKDVLVEQALNQ
                     ARAGADIIAPSDMMDGRVAPIRAALETEGFVNVQIMAYAAKYASAFYGPFRDAVGSLG
                     RLKGDKKTYQMSPANSDEALREVALDLAEGADTVMVKPGLPYLDIIRRMKDRFEVPVF
                     AYAVSGEYAMIEAAAAAGAGDREALVLETLLSLKRAGCSGVLTYHAPLAARLLGR"
     gene            1828..2715
                     /locus_tag="VE567_05510"
     CDS             1828..2715
                     /locus_tag="VE567_05510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010335894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HYZ48336.1"
                     /translation="MPVKELPKRAALVVNAQSRKGRALFAAAQEKLIARGIELVDARA
                     VHDPVQLRPIVRQVLAGKPPMVVVGGGDGTLSSTVDDFVPHDAVFALLPMGTANSFAR
                     TLGIPLDLDGAIEVIATGQRRRIDLGMIECDYFANCAAIGMAPLIAETVPHGLKRYLG
                     RVGYLGWAAWQFLRFRPFRLTVNGETIDAVEVRIANGAYHGGTELVEGAQVDSGEIVV
                     QAVTGCSRGRLAWSWAASLLKLRARRAMVREFHAPELRIATEPVLPISIDGEVLAHTP
                     CTARVARGVIEVAAPSRPV"
     gene            complement(2699..4147)
                     /locus_tag="VE567_05515"
     CDS             complement(2699..4147)
                     /locus_tag="VE567_05515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008601716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HYZ48337.1"
                     /translation="MARDNPRRDLTQGPIGQTLLMFALPTLGSSVLQSLNGSINAVWV
                     GRFLGENALAATANANLIMFLMNAFVFGFGMAATVLIGQSYGRRDIASARRAMGTALG
                     AFVPMTVVIAVLGWIFAPQILMLLRTPTEAYQPALDYLRVIFLAIPLSLVVILLMMGL
                     RGTGDSLTPLYFMMVAVLLDSTLNPVFILGLGPAPRLGIAGSATATVIANLVGLAAMI
                     GYIYARDLPLRLRGAELSYLRPHGPTLRIVLAKGFPMGLQMVVISLAALVMIGLVNAE
                     GLDTVAAFGVTQQLWTYVQMPAMAIGAAVSAMAAQNIGAGRWDRVAQITRAGLLLNLA
                     LTGGLVVLLLFVDRPALALFLGGHSPALPIARHIQLIATWNFILFGMTMVFFGVVRAN
                     GAVIAPLIILAVAMFPIRLGFIVLARPWLGADALWLSFPAGSIVTVALAALYYHYGGW
                     RQTRMAVPPPQEEVVEEALGTSEPGGRLKPAG"
     gene            complement(4275..>4993)
                     /locus_tag="VE567_05520"
     CDS             complement(4275..>4993)
                     /locus_tag="VE567_05520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HYZ48338.1"
                     /translation="LRYDEAANTIYHFVWSQFCDWYLELIKGQIDEETKAVAAWALDQ
                     ILVMLQPFMPFITEELWHAMGARPYDLIVAKWPLADASTIDPEAAREIEWLIRLVSEV
                     RTARTELNVPPGARVPFAVSDANPETERRLAAHAAALSRLARIERSNAPGGQAQIVVE
                     EATYALQLGEVIDLEAERARLSKGIAAAEKERDSLAGRLSNPAFVERAKPEAVEKARA
                     DHAEKAAEAERLTAALKRLG"
BASE COUNT          878 a         1640 c         1713 g          762 t
ORIGIN      
        1 cgaatgcgag cagcacccac cagagccgct gcctgagcgt cggcggccgc tccgtcacca
       61 gcccggcatc ggacgtgtcg aggccggcgc gcggcagcac cgcagcgcag gcgagcgtca
      121 tcaccacgag catcgcatag ccgagcgtcc ataacgtgct ttgcgcggcg actgtcatcc
      181 gcggctcgac gagcagcgga tagctcagca gccctgcaaa gctgcccaga ttggaggccg
      241 cgtaaagcgg atagggatcc ctgccgccgg tcgcggcggc ataccagcgc tggatcagcg
      301 gcgcctgggc agagacggcg aagaaaagcg ggccgatcga cagcagcagc agccagggca
      361 cccacagcac gggcgaggcc gcagcggaca aattgccgtc gatcaggccg atcggcagca
      421 gcagcgcagc cgcggcgagc aagaccagct gcaccgccga ttgcgtccgc acgctgaacc
      481 tcgccagcgc gtgcgcatag gcatagccgg cgagcagcaa cgcctgatag accagcatcg
      541 cgctgttcca caccgcgggc gcaccgccca accgcggcaa gaccatgcgc gcgatcatcg
      601 gctgaaccag gaaaaggagg aacgagccca gaaagatcgt gccgacgaac agcgggccgt
      661 gatcgcgacg cccctctttc accccgtcgg cctccagcgc tccaattgtc gccgccacca
      721 cctactccgc ctccagagcg tggaagccgc gcgtcggcgc ttcgatcatg gcgtgcaggc
      781 cagcgagaca ggacaggccg gtcaacgtcc gagcagccgc gccgctaacg gtgcgtgata
      841 agtgagcacg ccggagcagc cggcgcgctt cagcgacagc agagtttcga gcaccagcgc
      901 ctcgcggtcg cctgcgccgg ccgcggcggc cgcctcgatc atcgcatatt cacccgagac
      961 tgcataagcg aaaacaggga cttcgaaccg gtccttcatg cgccgaatga tatcgagata
     1021 gggcagcccg ggcttcacca tcaccgtgtc ggcgccttcg gccaggtcca gtgcgacctc
     1081 gcgcaacgct tcatcgctat tggcggggct catctggtag gtcttcttgt cgcccttgag
     1141 ccgccccagc gatccgaccg cgtcccggaa ggggccgtaa aaggccgagg cgtatttggc
     1201 ggcataggcc atgatctgga cgttgacgaa gccctcggtt tccaacgccg cgcggatcgg
     1261 ggcgacgcga ccgtccatca tgtccgaagg cgcgatgatg tcggcgccgg cgcgggcctg
     1321 attgagcgcc tgctccacca gcacgtcctt ggtcggatcg tttaagacgt agccgctggc
     1381 atcgatcagc ccgtcatggc catgggcggt gtagggatcg agcgcgacat cggtcagtat
     1441 cccgacctcg ggcactgcgt ccttgatcgc gcgactcgcg cggcacatca gattgtccgg
     1501 attgagcgct tcccggccgt catcggtgcg cagcgcctcc ggcgtgttgg ggaagagcgc
     1561 gaggcacggg atgccgagat cgcgggcttc gcgggcgcga tcgacgatcc ggtccaccga
     1621 ccagcgcgac acgcccggca tcgtcgcgac cggctgctcg accccctcgc cttcgacgat
     1681 gaacaagggc caaatcagat cggcgggcgt aagcacgttt tcggcgtgca gcgcacggct
     1741 ccaggcggaa gcgcgggtgc ggcggaggcg gagggcggga aaagcggcgt tgtgcatggg
     1801 acccgactag cctgaagcgg cgttgcgttg ccagtgaaag agcttcccaa acgcgcggcc
     1861 cttgtcgtca atgcccagtc gcgcaagggc cgcgccctgt tcgcggcggc gcaggagaag
     1921 ctgattgcgc gcgggattga gctcgtggac gcacgggccg tccacgatcc ggtgcaattg
     1981 cgaccgatcg tccggcaggt gctggccggc aagccgccga tggtggtggt gggcgggggc
     2041 gatggcaccc tgtcttcgac ggtggatgat ttcgtgccac atgacgcagt gttcgcgctg
     2101 ctgccgatgg gcaccgccaa cagcttcgcc cgtacgctcg gcatcccgct ggacctcgac
     2161 ggtgcgatcg aggtgatcgc caccggccag aggcggcgca tcgatctcgg catgatcgag
     2221 tgcgattatt tcgccaattg cgcggccatc ggcatggcgc cactgatcgc cgagaccgtg
     2281 ccgcacggcc tcaagcgcta tttgggccga gtcggctatc tcggctgggc cgcctggcag
     2341 ttcctgcgct tccgcccttt tcgcctgacc gtgaacggcg agacgatcga cgcggtcgag
     2401 gtgcggatcg cgaacggcgc ctatcatggc ggcactgagc tggtggaagg cgcccaggtc
     2461 gacagcggcg agatcgtggt ccaggccgtc accgggtgca gccggggccg gctggcttgg
     2521 agctgggccg ccagcctgct gaagctccgg gcgcgccggg cgatggtgcg cgagttccac
     2581 gcgcccgaac tcaggatcgc gaccgagccg gtgctgccga tctcgataga cggcgaagtg
     2641 cttgcccaca cgccttgcac agcgcgcgtc gccaggggcg tgatcgaagt agcggcgcct
     2701 agccggccgg tttgagccgc ccgccgggct cgctcgtccc cagcgcctcc tccaccactt
     2761 cttcttgggg cggcgggacg gccattcgcg tctggcgcca tccgccgtag tgatagtaga
     2821 gcgccgccag cgccactgtg acgatcgagc cggcggggaa gctcagccaa agggcatcgg
     2881 cccccagcca gggcctggcg agcacgataa agcctaggcg gatcgggaac atcgccactg
     2941 cgaggatgat cagcggcgcg atcaccgccc cgttcgcgcg gaccacgccg aagaacacca
     3001 tcgtcatgcc gaacaggatg aagttccagg tcgcgatcag ctggatgtgg cgggcgatcg
     3061 gcagcgcggg gctgtgtccg ccgaggaaca gcgccagcgc gggacggtcg acgaacagca
     3121 gcagcacgac aaggccgccg gtcagggcca ggttgagcag gagaccggcg cgcgtgatct
     3181 gcgcgacccg gtcccaccgg ccggcgccga tattctgcgc cgccatggcg ctcaccgccg
     3241 cgccgatcgc catcgcgggc atctgcacat aggtccagag ctgctgggtc acgccgaacg
     3301 cggcgacggt gtccagcccc tcggcattga ccagaccgat catgaccagc gcggcgagcg
     3361 aaatcacgac catctgcaag cccatcggaa agcccttggc caggacgatc cggagcgtcg
     3421 gcccgtgggg ccgaagatag gagagttcgg cgccgcgcaa tctgagtggc aagtcgcgag
     3481 cgtagatata gccgatcatc gcggcgaggc cgactagatt ggcgatcacc gtcgccgtcg
     3541 ccgacccggc gattcccagg cgcggcgcgg ggcccaggcc aagaatgaag accgggttca
     3601 gcgtgctgtc gagcaggacg gcgaccatca tgaaatagag tggagtcagc gagtcacccg
     3661 tcccccgcaa tcccatcatc agcaatatga cgaccaacga gagcggtatc gcgaggaaga
     3721 tcacgcgcag atagtcgagc gcgggctgat aggcttcggt gggggttcgc agcagcatca
     3781 ggatctgcgg cgcgaagatc cagccgagca cggcgatcac gaccgtcatc ggcacgaagg
     3841 cgccgagcgc agtacccatg gcccgccggg cagacgcgat gtcccggcga ccgtagctct
     3901 ggccgatcag caccgtcgcc gccatgccga agccgaagac gaaggcgttc atcaggaaca
     3961 tgatgaggtt cgcattggcg gtcgccgcca gcgcattctc gccgaggaag cggccgaccc
     4021 acactgcgtt gatcgagccg ttcagcgatt gcagcaccga cgagcccaag gtcggcagcg
     4081 cgaacatcag cagcgtctgc ccgatcgggc cctgcgtcag gtcgcggcgg ggattgtcac
     4141 gtgccattgg gcctcacgac gctataaaat tcacgaaggt cgcgcttatg gacaagcgcg
     4201 cttcgtgtga ggtttggcgg gcgggcatgc gccgacctat gcacatcggc gggcgtgtag
     4261 gacagccctg atcgtcaccc cagacgcttg agcgcggccg tcagccgctc ggcctcggct
     4321 gctttttcgg cgtgatcggc gcgggctttc tccaccgctt cgggtttggc gcgctcgacg
     4381 aaggccgggt tggagaggcg acccgcgagc gagtcgcgct ccttttccgc cgccgcgatc
     4441 cctttcgata gacgcgcgcg ttcggcttcg aggtcgatca cttcgccgag ctggagcgca
     4501 taggttgctt cttcaacgac gatttgggcc tggccgcccg gcgcgttgct gcgctcgatg
     4561 cgggcgaggc gggacagggc ggcggcgtgg gcggcgaggc ggcgctccgt ctcgggattc
     4621 gcgtcgctta ccgcgaacgg cacgcgcgca cccggcggca cgttgagctc ggtgcgggcg
     4681 gtgcggactt cgctcacgag gcggatcagc cactcgatct ccctggccgc ttctgggtcg
     4741 atcgtactgg cgtcggcgag gggccatttg gcgacgatca ggtcgtaggg gcgcgcgccc
     4801 atggcatgcc acagttcttc agtgatgaag ggcatgaagg gttggagcat gaccaggatc
     4861 tggtccagcg cccaggcagc gaccgccttc gtttcctcgt cgatctggcc tttgatcagc
     4921 tccaggtacc agtcgcagaa ctggctccag acgaagtgat agatggtgtt cgccgcctcg
     4981 tcgtagcgaa ggt
//
LOCUS       DASQVK010000258         2187 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_332853,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000258 DASQVK010000000
VERSION     DASQVK010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2187
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332853"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            143..1042
                     /locus_tag="VE567_05525"
     CDS             143..1042
                     /locus_tag="VE567_05525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYZ48339.1"
                     /translation="MAKDFALTAAALEKRFGRKQAVGGVDLAVPKGCIYGVLGPNGAG
                     KTTTLRILLGIIEPDAGERVVLGAAHPRDMSERIGYLPEERGLYPSMKAKDAIGFMGA
                     LRGLGWQEGRRRGVEMLEASGLGQAANEKIRNLSKGMAQLVQLLGSMVHRPDLLVLDE
                     PFSGLDPVNQEKLEALILAERARGATILFSTHVMAHAQRLCDRLAVIAGGRRRFEGTV
                     DEARALLPMRAHLTPRTGDPRALLPPDSEPVGDSFEFEVPPDGIEPILARLIETGHGV
                     AGLSIERPGLHEVFMKLVREAAA"
     gene            1039..>2187
                     /locus_tag="VE567_05530"
     CDS             1039..>2187
                     /locus_tag="VE567_05530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYZ48340.1"
                     /translation="MRRFLAQALVVARRDFIAIVFTPTFLIFLLAPLFMLSVATIGGL
                     GAARVVADDHERVVVLTGASKADRFRAAEERLRLVSGTDPGPPGISYEAATNDPHGQA
                     LRLLARGEAAAVLFDAGRAPTVLYKPDRARDAAYLALAARAAASGIEPQLQSATPPRP
                     QTGARERTAAGFGAVFAMFFLSLLLASQAISMLAEERSNKVVEILAAAIPIEAMFFGK
                     LIGMLGVALVFIAFWGGILGLAASAGLGGLSLGTIAPAGGLAGFAVLFILYFMLAFLL
                     LGAVFLGVGAQAASMREIQMMSLPITIFQVSMFALASAGAGDPDGPVGVTAALFPFSS
                     PFAMAARAANNAPAWQHVAALAWQSVWVAVTVAIAARLFRRGVLKSGVG"
BASE COUNT          303 a          701 c          786 g          397 t
ORIGIN      
        1 gtcgccgcga taggcgcgat ggacgagatc gtgcagcagt tccagatcgt cggccgttgc
       61 ggtgcggatt aagggtttca tgacgcactt ctttacggtg cgcggccttg acgccaagcc
      121 ccgttccggg ccttgagcgg atgtggccaa ggatttcgct ctcaccgccg ccgcgctgga
      181 gaaacggttc gggcgcaaac aggcggtcgg cggcgtcgat ctcgcggtgc ccaagggctg
      241 catttacggc gtgcttggcc caaatggggc cggcaagacg acgacgctgc gcattctgct
      301 cggcatcatc gagccggatg cgggggagcg ggtcgtgctc ggcgcggcgc atccacgcga
      361 tatgagcgaa cggatcggct atttgccgga agagcgcggg ctttatccct cgatgaaggc
      421 gaaggacgcg atcggcttca tgggcgcgct gcgagggctg ggctggcagg aagggcgacg
      481 gcgcggggtc gagatgctcg aagcttccgg gctcggccag gcggccaacg agaagatccg
      541 caatctttcc aaaggcatgg cgcagcttgt gcagctgctg ggatcaatgg tgcatcgccc
      601 tgacctgcta gtgcttgacg aacccttttc cggcctcgat cccgtcaatc aggaaaaatt
      661 ggaggcgctg atcctggccg agagggcgcg aggcgcgacg atcctgtttt ccacgcatgt
      721 gatggcgcac gcgcagcggc tctgcgatcg gctcgcggtg atcgccggcg gccgtcgccg
      781 cttcgaaggc acggtcgacg aggcgcgcgc tctgctgccg atgcgcgcgc atctgacgcc
      841 gcgcaccggc gacccgcgcg cgctgctgcc gcccgattcg gagccggtag gcgacagctt
      901 cgaattcgag gtgccgccgg acgggatcga gccgatcctg gcgcggctga tcgagaccgg
      961 ccacggcgtg gccgggctgt cgatcgagcg gcccggcctg cacgaggtat tcatgaaact
     1021 cgtgcgtgag gcggccgcgt gaggcgtttc ctcgctcagg cgctggtggt ggcgcggcgc
     1081 gatttcatcg cgatcgtgtt caccccgacg tttctcattt tcctgctcgc gccgctcttc
     1141 atgctgagcg tggcgacgat cggtggcctg ggcgccgcgc gtgtggtggc cgacgatcac
     1201 gagcgcgtcg tggtgctgac cggcgccagt aaggcggacc gcttccgcgc cgccgaagag
     1261 cggctgcgat tggtttccgg caccgacccc ggaccgcccg gtatttccta tgaggcagcg
     1321 acgaacgacc cgcacggcca ggcgctccgg ctgctggcca ggggcgaggc ggcggccgtg
     1381 ctattcgatg ccggtcgcgc gccgacggtc ctgtacaagc ccgaccgcgc gcgcgatgcg
     1441 gcctatctcg cgcttgccgc cagggcagcg gcctcaggca tcgagccgca gctccaatcg
     1501 gcgaccccgc cgcggccgca gacgggggcg cgcgagcgga ccgcggccgg cttcggcgct
     1561 gtgttcgcga tgtttttcct atcgctgctg ctcgccagcc aggcgatcag catgcttgcc
     1621 gaggagcgca gcaacaaggt cgtcgaaatc ctggccgccg ccattccgat cgaggcgatg
     1681 tttttcggca aattgatcgg catgctcggc gtcgcgctgg tcttcatcgc attttggggc
     1741 ggtattctgg gccttgccgc gtcggccggg ctgggcggcc tgagcctcgg cacgatcgcg
     1801 ccggccggcg ggcttgccgg ctttgccgtg ctgttcattc tctatttcat gctggccttc
     1861 ctgctgctcg gcgctgtgtt cctgggcgtg ggagcgcagg ccgcatcgat gcgcgaaatc
     1921 cagatgatgt cgctgccgat caccatcttc caggtctcga tgttcgcgct ggcgagcgca
     1981 ggcgcaggcg accccgacgg acccgtcggc gtgacggcgg cgctgtttcc gttcagctcg
     2041 cccttcgcga tggcggcgcg cgcggcgaat aacgcaccag cgtggcagca tgtcgcggcc
     2101 ttggcctggc agagcgtctg ggtggcggtg acagtcgcga tcgccgcccg gctgttccgg
     2161 cgcggcgtgc tgaaatctgg cgtcggg
//
LOCUS       DASQVK010000259         2997 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_47964, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000259 DASQVK010000000
VERSION     DASQVK010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2997
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47964"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..557
                     /locus_tag="VE567_05535"
     CDS             <1..557
                     /locus_tag="VE567_05535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48341.1"
                     /translation="TAAVNEMFRTGAAPDELVGALTKTPAQMWEDRRKEAIAAELESD
                     KNNKRLWSLILPYASVERYEELSSTVWNGEKAKLIAKQPEEKLNAFRVLARGGVLTQV
                     DEMLLHAAVVAKARGYPGFQFMMLPTHPSIGWVRFGKPGDPGIEPLLFIDASAVIAEL
                     KVVIPPPDEMKARRAARASTAKGS"
     gene            complement(596..1879)
                     /gene="murA"
                     /locus_tag="VE567_05540"
     CDS             complement(596..1879)
                     /gene="murA"
                     /locus_tag="VE567_05540"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006955350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HYZ48342.1"
                     /translation="MDRIIIRGGRPLEGRLPISGAKNSALTLLPCALLTDEPLTLRNL
                     PRLADVDSFGHLLNQLGVSTTIEGARPEDFGRVMTLRATNLTATMAPYDIVRKMRASI
                     LVLGPILARAGEATVSLPGGCAIGNRPIDLHLKALEAIGAQLEMSAGYVRAVAPGGRL
                     PGGHIVFPIVSVGATENAVMAAVTASGRSTIENAAREPEIVDLCRCLVAMGARIDGIG
                     TETLTIDGVKELHGATYAVMPDRIEAGSYACAVGAAGGSVELLGARASEMRATIAGLH
                     EAGVAVEETPEGLKVSADGPLKPLTLSTAPYPGFATDMQAQFMAMLTRANGSSVLTET
                     IFENRYMHVPELNRMGADITVTGRSAVVRGVEELNGAPVMATDVRASMSLIIAGLAAK
                     GETQVRRVYHLDRGYERLEEKLSAVGAEIERDGDG"
     gene            complement(1918..2265)
                     /gene="clpS"
                     /locus_tag="VE567_05545"
     CDS             complement(1918..2265)
                     /gene="clpS"
                     /locus_tag="VE567_05545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006959150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HYZ48343.1"
                     /translation="MIDRPMLMAGERQDDDSGTGVGVATRTRAKSKKPSLYKVLMLND
                     DYTPMEFVVLVLQNFFRMSLEDATRVMLHVHQKGVGVCGIFSYEVAESKVSQVIDFAR
                     QNQHPLQCTLEKA"
     gene            complement(2432..>2997)
                     /locus_tag="VE567_05550"
     CDS             complement(2432..>2997)
                     /locus_tag="VE567_05550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phasin family protein"
                     /protein_id="HYZ48344.1"
                     /translation="APVAAVAIEEAILAPKAPAAAPVETMMKGPKMTDTVNTAADNAK
                     TFAQDAQNRAADMFNEFNSRTKVAVERSTKLIEELNEFSKGNVEAFVESGRLAAKAAE
                     ALSQQAADTARKNFEQTTAALKTFAAAKTPTEFFQLQSDYARNAFDSIIAETSKNSET
                     LLKLAGDVFQPISNRFAVAAEKIKTAA"
BASE COUNT          521 a          914 c         1016 g          546 t
ORIGIN      
        1 agacggccgc cgtgaacgag atgtttcgga ctggcgcggc acctgacgaa ctggtgggtg
       61 cgcttaccaa gacgcccgcg caaatgtggg aagatcggcg aaaggaagcg attgccgcgg
      121 aactggaatc ggacaagaac aacaagcggc tctggtcgct tatcctgcct tacgcgtccg
      181 tcgagagata cgaagagctg tcgagcaccg tttggaatgg cgaaaaggcc aagctgatcg
      241 ccaagcagcc ggaggaaaag ctgaatgcct ttcgggtgct agcccggggc ggcgtactga
      301 ctcaggtcga cgagatgctg ctgcatgcgg ccgtggtggc gaaggcacgg ggctatccag
      361 gattccagtt catgatgtta ccgacgcatc caagcatcgg ttgggtgcgg ttcgggaaac
      421 cgggtgatcc cgggatcgaa cctcttctgt ttatcgacgc ctcggctgtc attgctgagc
      481 tgaaggtcgt cataccgccg cccgacgaaa tgaaggcgcg gcgcgcggct cgggccagca
      541 cagctaaggg gagttgaggg ctggggcgac agcctccatc gcgtgcaggc gcggttcagc
      601 cgtccccgtc ccgctcgatc tcggcgccga cggcggagag tttctcctcc agccgctcat
      661 agccgcggtc gaggtgatag acgcggcgga cctgggtctc gcccttggcg gcaaggcccg
      721 cgataatcag gctcatcgag gcgcgcacat cggtcgccat caccggcgcg ccgttcagct
      781 cttcaacgcc gcgtaccacc gcggagcggc cggtgaccgt gatgtcggcg cccatgcggt
      841 tgagttcagg cacgtgcatg tagcgattct cgaagatggt ctcggtcagc acgctggagc
      901 cattggcgcg cgtcagcatt gccatgaact gcgcctgcat gtccgtcgca aagccgggat
      961 agggcgcggt cgaaagggtg agcggcttga gcggaccgtc ggcgctgacc ttgaggccct
     1021 ctggcgtttc ctcgaccgcg actccggcct cgtgcagccc ggcaatggtc gcgcgcattt
     1081 cgctcgcgcg cgcgccgagc agctcgaccg agccgccggc ggcgcccacc gcacaggcat
     1141 agctgcctgc ctcgatccgg tccggcatca cggcataggt ggcgccgtgc agttccttga
     1201 cgccgtcgat ggtgagcgtc tcggtgccga tcccgtcaat ccgcgcaccc attgcgacca
     1261 ggcagcggca gagatcgacg atctccggct cgcgcgcggc gttctcgatc gtcgagcggc
     1321 cggaagcggt gacggcggcc attacggcgt tttcggtggc gccgaccgag acgatcggga
     1381 agacgatatg gccgcccggc agccggccgc cgggagcgac ggcgcggaca tagccggcgc
     1441 tcatttccag ctgcgcgccg attgcttcca gagctttcag gtgcaggtcg atcgggcgat
     1501 tgccgatcgc gcagccgccg ggcagcgata cagtggcctc gccggcgcga gcaaggatcg
     1561 gccccagcac caggatcgag gcgcgcatct ttcgcacaat gtcatagggc gccatcgtcg
     1621 cggtgagatt ggtggcacgc agcgtcatca cgcgcccgaa atcctcgggc ctggcgcctt
     1681 cgatcgtggt cgagacgccg agctgattga gcagatggcc gaagctgtct acgtcggcga
     1741 ggcggggcag gttccgaagt gtcagcggct cgtcggtgag cagcgcgcaa gggagcaaag
     1801 tgagagcgga attcttggcg ccggaaatcg gcaggcgccc ttccagcggc cgcccgccgc
     1861 ggatgatgat gcggtccatc ggcagtgtcc tagcgtctag ctaggcaggc gcaagcgtca
     1921 ggccttttcc agcgtgcact gaagcggatg ctggttctgg cgggcgaaat cgatgacttg
     1981 ggaaactttc gattcggcga cttcgtatga gaagatgccg cacacgccga cgcccttttg
     2041 atgcacgtgc agcatcacgc gggtcgcgtc ctccaggctc atccggaaaa aattctgcag
     2101 cacgagaacg acgaactcca tcggcgtgta gtcgtcgttc agcatcagga ccttgtaaag
     2161 cgacggcttc ttggactttg cgcgcgtccg ggtggcgacg ccgacgccag tgccgctatc
     2221 gtcgtcctgg cgctcgcctg ccatgagcat cgggcgatcg atcatgttga aatccgtgtc
     2281 acgcatggca gaacatagaa tatggcatgc cggctcccgc gggcaagagt gcgccgccac
     2341 cattaaccgc agaaacgcaa acggccgccc cgggtgatgg ggcggccgtc gaaagatcgg
     2401 caaaggggag ccgatcagct acgctacaaa cttaagcggc ggtcttgatc ttctcagccg
     2461 cgaccgcaaa gcggttcgag atcggctgga acacgtcgcc ggcgagcttg agcagcgtct
     2521 cgctgttctt ggaggtctcg gcgatgatcg agtcgaacgc gttgcgcgca tagtcgctct
     2581 ggagctggaa gaactcggtc ggcgtcttgg cggcggcgaa agtcttcagc gcagcggtgg
     2641 tctgctcgaa gttcttccgg gcggtgtcgg cggcctgctg gctcagcgct tccgcggcct
     2701 tggcggcgag gcggcccgat tcgacgaacg cttcgacatt gcccttgctg aactcgttca
     2761 gttcctcgat cagcttggtc gagcgctcga cggccacctt ggtgcgggag ttgaactcgt
     2821 tgaacatgtc ggccgcgcgg ttctgcgcgt cctgagcaaa ggtcttcgcg ttgtcggcgg
     2881 cggtattcac ggtgtcggtc attttcggtc ccttcatcat cgtctcaacc ggcgctgcgg
     2941 ccggcgcttt cggagctagg atagcttcct cgattgcgac agccgcgacg ggcgctg
//
LOCUS       DASQVK010000260         4460 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_237690,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000260 DASQVK010000000
VERSION     DASQVK010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4460
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237690"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(43..1503)
                     /locus_tag="VE567_05555"
     CDS             complement(43..1503)
                     /locus_tag="VE567_05555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010408342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HYZ48345.1"
                     /translation="MKRILAATLIASLSACSMVPHYQPPAPPIPASWPVGDAYLRQSE
                     ANLPSVTYRDIFRDARLQRIIETALANNRDLRVAFANIAAAREQYRIQRAQILPEVGT
                     SASVTEADRGSGAQTGTGSAGGGRRTTYNVQGGITAFEIDLFGRIRALSEAAQNRYFA
                     TEAGARATRLTLVGDIANAWLAYAADQDLLAIAQRTAASAQRSVELTRAQLNGGIAPR
                     TDLRQAEQTLEQARADIAQSRTNVAQDLNLLQLLVGAPVDPALLPASLNQVDNTIAEL
                     PAGLESTILLRRPDVVQAEYQLRAANAEIGAARAALFPRISLTAVLGFASTALSNLFA
                     PGSFNWSVGPQASYSIFQAGAARANVRFTQAQREAALAQYEGAIQTAFREVADALARR
                     GTIDEQLRAQRAFLTASEDNYRLSEARFRGGIDPFLQTLIAQRSLYSAERALVATRLI
                     KAQNLVQLYRTLGGDSQLDPTPTGPVPLSPQQPPAR"
     gene            complement(1500..>4460)
                     /locus_tag="VE567_05560"
     CDS             complement(1500..>4460)
                     /locus_tag="VE567_05560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017670367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYZ48346.1"
                     /translation="LYFSSTSTARGQVNISLTFGKGTDPDIAQVQVQNKVQQALSRLP
                     QQVQQQGLTVTKSNPDFLLIVAVYDETDRAGNSEVSDWMASNLQDPLSRLPGVGDTNV
                     FGAQHAMRIWLDPNRLASYQLMPGDVIAAVQSQNTEITAGEIGAQPMPQTQMLNATVT
                     SQSRLQTAEQFRQIVLKTRPDGSTVRLGDVARVELGSENYNVIIHLNGHPGAGLAISL
                     APGADALTTADLVKAEVARQAKNFPPGFAYAYPNDATAFIKLSVKEVVKTLAEAIVLV
                     VIVMFVFLQSWRATLIPAIAVPVVLLGTFAVFAVAGFSINTLTLFGLVLAIGLLVDDA
                     IVVVENVERLLEEHPEMSPREASIQSMREISTALIAIAMVLSAVFLPMAFFGGSTGVI
                     YRQFSITIVSAMVLSVIVALVLSPALAATLLKARAHGETIRSSRFPRLAAAVERARER
                     FNTGFANLIERYTGAVRRVIDRKALFLAIYALTVLLLVLLFVRLPTSFLPTEDQGFAL
                     AQIRLPPGATLARTQVVQRQVEDYLLHGREAKNINALFTVAGGGGGGPSGQNAGNAFL
                     ALKDWSQRPGPENSADAVTQRMSRAFGGLRDAQVFAMVPGAIRGLGQSNGFTLELQNT
                     GGLSREAFKAARDRLLDLAAADSQLSGVRPSELPDTPTLRVDLDPQKLSVLGLSQADV
                     NNTLSTAWGGRYVNDFVDQGRVKRVYVQGDAPYRGVPEDLYQWYVRGSTGQMAPFSAF
                     ARMSWQTGPVSLARFGGVPAYEIQGQAAPGTSSGAAMNRIEALASQLPGVSVAWSGLS
                     YQQRLSTGQAPLLYGLSLLVVFLCLAALYESWSIPVAVLLIIPLGLVGAVFAVTLRGL
                     ENDVYLQIGLLTTMGLAAKNAILMIEFAEAAEKSGKRVIDSALEAARIRLRPILMTSF
                     AFIFGVLPLAISTGAGAKSRVAIGTSVIGGMLTATMLAIFFIPLFFVLVRRGTRDTLG
                     RFRRHRHTPEESAA"
BASE COUNT          744 a         1362 c         1664 g          690 t
ORIGIN      
        1 ttaccggcaa cttgcgaggg agcaacctgg tggctgatgg actcagcgcg ccgggggttg
       61 ctgcggtgac agcggcaccg ggccggtcgg ggtggggtcc agttgggagt cgccgccaag
      121 ggtgcggtag agttggacga ggttctgggc cttgatgagg cgcgtggcca cgagtgcgcg
      181 ttcggcgctg tagaggctgc gctgggcgat gagggtctgc aggaaagggt cgatgccgcc
      241 acggaagcgg gcttcgctca ggcggtaatt gtcctccgac gccgtcagga acgcgcgctg
      301 ggcgcggagt tgctcgtcga tcgtgccgcg cctggcgagc gcgtcggcga cttcgcggaa
      361 cgcggtctgg atcgcgcctt catattgagc gagggcggct tcgcgctggg cttgcgtgaa
      421 gcggacgttc gcgcgcgcgg cgccggcctg gaagatcgag tagctcgcct gcgggccgac
      481 cgaccaattg aagctgccgg gagcgaacag gttcgacagc gccgtgctcg caaagccgag
      541 cacggcggtg aggctgatgc gcgggaagag cgcggcgcgg gcggcgccga tctcggcatt
      601 ggcggcgcgc agctgatact cggcctgcac cacgtccggg cggcggagca ggatcgtgga
      661 ctcgagcccg gcggggagtt cggcgatcgt gttgtcgact tggttcagcg aggcggggag
      721 gagggcgggg tccaccggcg cgccgacgag aagctggagc aggttcagat cctgcgccac
      781 gttcgtacgc gactgggcaa tgtcggcgcg cgcctgttcg agcgtctgct ccgcctggcg
      841 cagatcggtg cgcggggcga tgccgccatt gagctgcgcc cgggtgagct cgaccgagcg
      901 ctgggcggac gcggcagtgc gctgggcgat cgcgagcagg tcctggtccg cggcataggc
      961 gagccaggca ttggcgatgt cgccgacgag cgtgaggcga gtggcgcggg cgccggcctc
     1021 ggtcgcgaaa tagcgattct gcgcggcctc gctgagcgcg cggatgcggc cgaacaggtc
     1081 gatctcgaac gcggtgatgc cgccttgcac attgtaagtg gtgcggcggc cgccgccggc
     1141 gctgcccgtg cccgtctggg cgccgctgcc gcgatcggct tcggtaaccg aagcgctggt
     1201 gccgacttcg ggaaggatct gggcgcgctg gatgcggtat tgctcgcgcg cggcggcgat
     1261 gttggcgaaa gcgacgcgca ggtcccgatt gttggcgagt gcggtctcga tgatgcgctg
     1321 gagccgggcg tcgcggaaga tgtcgcgata ggtgacgctc ggcagattgg cttccgattg
     1381 gcggagatag gcgtcgccga ccggccagga cgccgggatc ggcggcgcgg gcggctggta
     1441 atgaggcacc atcgaacagg cagagaggct cgcgatcagc gtggcggcga ggatgcgctt
     1501 catgcagcgc tctcctcggg cgtgtggcga tggcggcgga accggccgag cgtgtcgcgc
     1561 gtgccgcggc ggaccaggac gaagaagagc gggatgaaga agatggcgag catggtcgcg
     1621 gtcagcatgc cgccgatcac cgaagtgccg atcgccacgc ggctcttcgc gcccgcgccg
     1681 gtcgagatgg cgagcgggag cacgccgaag atgaacgcga agctcgtcat caggatcggg
     1741 cgcaagcgga tgcgcgcggc ttcgagggcg gaatcgatga cgcgcttgcc ggacttttcg
     1801 gcggcctcgg cgaactcgat catcaggatc gcattcttgg cggcaaggcc catcgtggtg
     1861 agcaggccga tctggagata gacgtcgttc tccaggccgc gaagcgtcac cgcgaagacg
     1921 gccccgacca gccccagcgg gatgatcagc agcacggcga ccggaatcga ccagctttcg
     1981 taaagcgcgg cgaggcacag gaagacgacc aggagcgaca ggccgtaaag gagcggcgcc
     2041 tggccggtcg agagccgctg ctggtaggac aggccgctcc aggccaccga cacgccgggg
     2101 agttgcgagg cgagcgcctc gatccggttc atcgccgcgc ccgagctggt gccgggcgcc
     2161 gcctgaccct ggatttcata ggccggcacg ccgccgaagc gggcgagcga aaccgggcct
     2221 gtctgccacg acatgcgggc aaaggcgctg aacggcgcca tttgcccggt cgagccgcgg
     2281 acataccatt ggtacaggtc ctcgggcacg ccgcgatagg gcgcgtcgcc ctgcacatag
     2341 acgcgcttca cccgaccctg atcgacgaag tcgttgacat agcgcccgcc ccaggcggtg
     2401 gagagcgtgt tgttgacgtc ggcctggctg agacccagca ccgaaagctt ctgcggatcg
     2461 agatcgacgc gcagcgtcgg cgtgtcgggc agctcgctgg ggcggacgcc gctgagctgg
     2521 gagtcggcag cggcaaggtc gagcagccgg tcgcgcgccg ccttgaaagc ttcgcggctg
     2581 agcccgccgg tgttctgcag ctcgagcgtg aacccgttcg actggccgag gccgcgaatg
     2641 gcgccgggca ccatcgcgaa cacctgcgcg tcgcgcaggc cgccgaacgc gcggctcatc
     2701 cgctgggtga cggcgtccgc gctgttctcc gggccggggc gctggctcca atccttgagc
     2761 gcgaggaagg cgttgccggc attctggccc gagggtccgc cgccgccgcc gcctgcgacc
     2821 gtgaacagcg cgttgatgtt cttggcttcg cgcccgtgca gcagataatc ctccacctgc
     2881 cgctggacga cctgcgtgcg agcgagggtg gcgcccggcg gcagccggat ctgcgcgagg
     2941 gcaaagccct gatcttcggt cggcaggaag ctggtgggca accggacgaa cagcaggacg
     3001 agcagcagga ccgtcagggc atagatggcg aggaacagcg ccttgcggtc gatcacgcgc
     3061 cgcacggcgc cggtatagcg ctcgatcagg ttggcaaagc cggtgttgaa ccgctcgcgc
     3121 gcgcgctcca cggcggcggc aaggcggggg aagcggctgg aacggatcgt ctcgccatga
     3181 gcgcgcgcct tgagcaacgt ggcagcgagg gcagggctca gcaccagcgc gacgatcacc
     3241 gagagcacca tcgcagagac gatcgtgatc gagaattggc ggtagatcac gccggtcgag
     3301 ccgccgaaaa aagccatcgg caggaacacg gccgagagca ccatcgcaat cgcgatcagt
     3361 gcggtcgaga tttcgcgcat cgactggatg gatgcctcgc gcgggctcat ctccggatgc
     3421 tcttcgagca ggcgctcgac attctcgacc accacgatcg catcgtcgac gagcaggccg
     3481 atcgcgagca ccaggccgaa cagcgtcagc gtgttgatcg agaagcccgc caccgcaaac
     3541 accgcgaacg ttcccagcag cacgaccggc accgcgatgg cgggaatgag cgtggcgcgc
     3601 cagctttgca ggaagacgaa catgacgatg acgaccagca cgatcgcctc ggcgagagtc
     3661 ttcaccactt ctttgacgga gagcttgatg aacgcggtcg catcgttggg ataggcatag
     3721 gcgaagccgg gcgggaagtt cttcgcctgg cgggcgacct ccgccttgac caggtcggcg
     3781 gttgtgagcg cgtcggcgcc gggggccagc gagattgcga ggccggcgcc cggatggccg
     3841 ttcaggtgga tgatgacgtt gtaattctca gagcccaatt ccacccgggc gacgtcgccg
     3901 aggcgcaccg tcgagccgtc gggccgggtc ttgagcacga tctgacggaa ttgttccgcg
     3961 gtctgcagcc tggactggga ggtcaccgtc gcgttcagca tttgcgtctg cggcatcggc
     4021 tgagcgccaa tttcgccggc ggtgatttcg gtattctgcg attgaaccgc ggcgatcacg
     4081 tctccgggca tcagctgata ggaagcgagc cggttcggat cgagccagat gcgcatcgca
     4141 tgctgagcgc cgaacacatt ggtgtcgccg acgcccggca gacggctgag cgggtcctgc
     4201 aggttggaag ccatccagtc ggagacttcg ctgttcccgg cgcggtccgt ctcgtcatag
     4261 acagcgacga tcagcagaaa gtcagggttc gacttggtga ccgtcagccc ctgctgttgc
     4321 acctgctgag gcagtcgcga gagcgcctgc tgcaccttgt tctggacctg gacctgcgcg
     4381 atgtccggat cggttccctt cccgaacgtc aggctgatgt tgacctgtcc gcgcgcggtc
     4441 gaggtcgagc tgaaatagag
//
LOCUS       DASQVK010000261         2781 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_16786, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000261 DASQVK010000000
VERSION     DASQVK010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2781
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16786"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..272)
                     /locus_tag="VE567_05565"
     CDS             complement(<1..272)
                     /locus_tag="VE567_05565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019367832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase"
                     /protein_id="HYZ48347.1"
                     /translation="MAATAADIVQRIQDEEIEWVDLRFTDPKGKWQHLSMVSGVIDED
                     SLTDGLMFDGSSIAGWKAINESDMILMPDPATAVLDPFTAQTTLIV"
     gene            complement(300..638)
                     /locus_tag="VE567_05570"
     CDS             complement(300..638)
                     /locus_tag="VE567_05570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HYZ48348.1"
                     /translation="MKKIEAIIKPFKLDEVKEALHDVGVSGITVTEAKGFGRQKGHTE
                     LYRGAEYVVDFLPKVKLEVVVEDTLAERVVEAIAAAAQTGRIGDGKIFVLPVETALRI
                     RTGERDADAL"
     gene            complement(759..2282)
                     /locus_tag="VE567_05575"
     CDS             complement(759..2282)
                     /locus_tag="VE567_05575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007686096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6504 family protein"
                     /protein_id="HYZ48349.1"
                     /translation="MRRVASLYLPFLSIDRIRRTDTTRGARPDRPIVVVHREGQRMVL
                     AAACRHAMTLGLGPGLPLSQARAMVPDLEAHDADPERDVGLLRWLGAFAARRVTPLVA
                     LAGADGLWLDLTGVAHLHGGERRLCAKLLRLCAKLGLEARIAVAGNGAAAHALARYGP
                     EPLFLCEAGGEEAALGPLPVMALRLDEETLKVARRLGFERIGDLVAKPRGPLARRFGQ
                     ALLTRLDQALGRTAEPIDPIVPQDALRAQLRFAEPIGDAETIARAVGDLLDRLIETLR
                     EAGQGARVLLLICERVDKREERVAVGAARATRDKAHLLRLLARKIETIDPGFGIDAMR
                     LLAARTEPLGACPVPGDLAAPEPIPDLAQLIDLIAGRIGAQRLYRLSAFESEVPERSM
                     RRLAPLDEPVPWPDAWPRPPRLLPRPEPIAHVMAELPDAPPRRFTWRGKTHRLVKGDG
                     PERIYGEWWKRSGERDAVRDYFRVEDESGARFWLYRRGDGHDPRTGDLSWWMQGGCG"
     gene            complement(2197..>2781)
                     /locus_tag="VE567_05580"
     CDS             complement(2197..>2781)
                     /locus_tag="VE567_05580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010545777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein ImuA"
                     /protein_id="HYZ48350.1"
                     /translation="GGYSDDAAATLFLAGIAGRRAGARGTVLWAMARRDLFAPGLAQA
                     GLPPDRLLVAEAGRDADVLAVMEEGLRHGALAAVVGEVVRAGLTETRRLQLAAEEGGT
                     MALLLRRWRQGDPLDQPSTALTRWRIGSAPSAPLPVAGIGRARWHVELARQRGGPGFS
                     LLLEALDAQGRLALPALSVHRPDQADGHDTRRAA"
BASE COUNT          442 a          990 c          940 g          409 t
ORIGIN      
        1 ttgacgatca acgtggtctg cgcggtgaag ggatcgagca cggcggtcgc gggatccggc
       61 atcaggatca tgtcggactc gttgatcgcc ttccagccgg cgatcgagga accgtcgaac
      121 atcaggccgt ccgtcagcga gtcctcgtcg atcacaccgc tgaccatcga gaggtgctgc
      181 cacttgccct tggggtcggt gaaacggaga tcgacccact cgatctcttc gtcctgaata
      241 cgctgaacaa tatctgcggc agtagcggcc attctcgtct ccttgggtga attggtcggt
      301 taaagggcgt cggcgtcgcg ttcgccggta cggatgcgaa gcgcggtttc gaccggcagc
      361 acgaaaatct tgccgtcgcc aatgcgcccg gtctgggccg cggcggcgat ggcttcgacc
      421 acgcgctcgg ccagcgtatc ctcgaccacc acctccagct tcaccttggg gaggaagtcg
      481 acgacatatt cggcgccgcg atacagttcg gtatggcctt tctggcggcc gaagcccttg
      541 gcctcggtca cggtaatgcc ggacaccccg acgtcgtgca gggcttcctt cacttcgtcg
      601 agtttgaacg gcttgatgat cgcctcgatc ttcttcaccc ggtcccccgc tcattgtgcg
      661 ctgcacaatc ataggcgcgc cttgtcacga gtcgcaagcg gcgtttagtc gctttgtaac
      721 attgttgcag ccgttcgatg tgaaaagggc gaattggcct agccgcaccc gccctgcatc
      781 caccagctga gatcgccggt gcgcgggtca tggccgtcgc cgcggcggta gagccagaag
      841 cgcgcgccac tctcgtcctc gacgcggaaa taatcgcgca ccgcatcgcg ctcgccgctg
      901 cgcttccacc attcgccata gatgcgctcg gggccatcgc ctttgaccag ccggtgagtc
      961 ttgccgcgcc aggtgaagcg ccggggcggc gcatcgggca gctcggccat cacatgggcg
     1021 atcggctcgg ggcgcggcaa cagccggggc gggcgcggcc aggcatcggg ccagggcaca
     1081 ggttcgtcca gaggcgcgag cctgcgcatg ctgcgctcgg gcacttcgct ttcgaacgcg
     1141 ctcagccgat agaggcgctg cgcaccgatc cggccggcga tcaggtcgat cagctgggcg
     1201 agatcgggta tgggctcggg cgcggcgaga tcgccaggca ccgggcaagc gccgagcggc
     1261 tcggtgcgcg cggcgagcag gcgcatagca tcgatgccga agcctgggtc gatcgtctcg
     1321 atcttgcgcg caagcaggcg cagcagatgc gccttgtccc gcgtcgcccg cgcggcgccg
     1381 accgcgacgc gctcctcgcg cttgtcgacg cgttcgcaga taagcagcag cacccgcgcg
     1441 ccttgccccg cttcgcgcaa ggtttcgatc agccggtcga gcagatcgcc gacggcgcgc
     1501 gcgatcgtct ccgcatcccc gatcggctcg gcaaagcgca attgcgcgcg cagggcatcc
     1561 tgcggcacga tcgggtcgat cggctcggcc gtccggccca gcgcctgatc caaccgcgtg
     1621 agcagcgcct ggccgaagcg gcgagcgagg gggccgcgcg gtttcgcgac cagatcgccg
     1681 atccgctcga accccagccg gcgcgctacc ttgagcgttt cctcgtcgag ccggagcgcc
     1741 atgaccggga ggggcccaag cgccgcttct tcgccgccgg cctcgcagag aaatagcggc
     1801 tcgggaccgt agcgtgccag tgcgtgtgcg gcggcgccat tgccggcgac cgcaatccgc
     1861 gcctccaaac ccagcttcgc gcagagccgc agcagcttgg cgcacaatcg ccgttcaccg
     1921 ccgtgcagat gcgcgacgcc ggtcaggtcg agccacagcc cgtccgcacc ggccagcgcg
     1981 accaaaggcg tgacgcgccg cgcggcgaac gcgccgagcc accggagcag cccgacgtcg
     2041 cgctccggat ccgcgtcgtg cgcctccaaa tccggcacca tcgcgcgcgc ctgggacagc
     2101 ggcaggccgg ggccgaggcc gagcgtcatg gcatggcgac aggccgcggc aagcaccatg
     2161 cgctggcctt cgcggtgcac gacgacgatg ggccgatcag gccgcgcgcc gcgtgtcgtg
     2221 tccgtccgcc tgatccggtc gatggacaga aagggcaggt agagcgaggc gaccctgcgc
     2281 atccaaagcc tccagcaaaa gcgaaaaacc gggcccgccg cgttggcggg caagctcgac
     2341 atgccagcgg gcgcggccga tccccgccac cggcaacggt gcggacgggg cggagccgat
     2401 ccgccagcgc gtgagcgcgg tcgagggctg gtcgagcgga tcgccctgcc gccagcggcg
     2461 gagcagcagc gccatcgtac cgccttcttc cgccgcgagc tgcagccgcc gcgtctcggt
     2521 gaggcccgcg cggacgacct cgccaaccac ggccgcgagc gccccatggc gcaaaccctc
     2581 ttccatcacg gccagcacat cggcgtcgcg cccggcttcg gcgaccagca gccgatccgg
     2641 cggtagcccc gcctgagcga ggccgggcgc gaacaggtcg cgccgcgcca tcgcccacag
     2701 caccgtaccg cgcgcgcctg cccgccggcc ggcgatgccg gcgaggaaca aggtcgccgc
     2761 ggcatcgtcg ctatagccgc c
//
LOCUS       DASQVK010000262         3870 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_269852,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000262 DASQVK010000000
VERSION     DASQVK010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3870)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3870
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269852"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..536
                     /locus_tag="VE567_05585"
     CDS             <1..536
                     /locus_tag="VE567_05585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="DOMON-like domain-containing protein"
                     /protein_id="HYZ48351.1"
                     /translation="LERRSLHPHPAELPSAPFSLDVAVRAGAERLQLSFRLTGPIEQL
                     RVPSPSAPARRDNLWQHTCFEAFLSLDGGYLEFNLSPSTQWAAYCFSGYRAGMSELEV
                     AAPGIAVSRTDCLLELDADLALPAGLVSRRLGLSAVIEDVSGRKSYWALVHPPGGRPD
                     FHHADCFALELPPASHS"
     gene            533..1732
                     /locus_tag="VE567_05590"
     CDS             533..1732
                     /locus_tag="VE567_05590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1343 domain-containing protein"
                     /protein_id="HYZ48352.1"
                     /translation="MKFGIDRLLADPDLCAPLQGKRVALLAHPASVTADLTHSLDALA
                     AAGVNVSAAFGPQHGLRGDKQDNMVESPDYDDPALGIPVFSLYGQVRRPTGQMMSACD
                     VVLVDLQDLGCRIYTFVTTLRYMLEAAAQHGKAVWVLDRPNPAGRPIEGLTLREGWES
                     FVGAGPMPMRHGLTLGELGLWFVDRLKLDVDYRVIEMRGWRPGAEPGFGWPLEERIWV
                     NPSPNAPNLNMARAYAGTVMLEGTTLSEGRGTTRPLEIFGAPDIDAKSVMAEMRQLAP
                     HWLRGCALRDIWFEPTFHKHVGKLCNGVHIHAEGRFYDHHAFRPWRLQALAFKAVRRL
                     YPDYPLWRDFPYEYEFDKLAIDVINGGPQLRDWVDDASATPGDLDALTAPDEQAWAEE
                     RRRFLLY"
     gene            complement(1674..2177)
                     /locus_tag="VE567_05595"
     CDS             complement(1674..2177)
                     /locus_tag="VE567_05595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48353.1"
                     /translation="MMGRTPRAILACTAVSGTLDILSAFVFGGMAGASPGRILRYVAS
                     GPFGDAMRDGGAGATALGLGVHYGLMTIMATVFALAAQRLSILLRRPILSGAAYGLAI
                     YTVMYWLVVPARFGRYPKLDAWSLGNALFSHIVCVGIPMALVAAWLLNRAGSAAALPP
                     MPARQVP"
     gene            2396..2527
                     /locus_tag="VE567_05600"
     CDS             2396..2527
                     /locus_tag="VE567_05600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48354.1"
                     /translation="MRYYSRRAASEAAAAAKAVTPEAAVRRRALAEMFARKAQELCA"
     gene            2577..3311
                     /locus_tag="VE567_05605"
     CDS             2577..3311
                     /locus_tag="VE567_05605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010408431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HYZ48355.1"
                     /translation="MAKQRADQLLVDRALAESRTRAQALIFAGLVFSGERRIEKPGQS
                     LSEDAPLEVRGRDHPWVSRGGVKLAHGLDHFGWDVTDVVAIDVGSSTGGFTDVLLTRG
                     AARVYAVDSGTNQLAWKLRQDPRVVVLEQLSARLLTPEHIPEPVDLIVCDASFISLAK
                     VLETPLTFVRPAARLMALIKPQFEAGREEVGKGGVVRDPAVHDRVCREVAGWLETWGW
                     SVDGVVRSPITGPEGNVEFLIAARRG"
     gene            3387..>3870
                     /locus_tag="VE567_05610"
     CDS             3387..>3870
                     /locus_tag="VE567_05610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYZ48356.1"
                     /translation="MDILARSAALAALLCSTAAVAQRTTDNATTQSKDAFGKRVGDEQ
                     IGIYNPFDVRGFSAVDAGNTRIEGLYFQQQADPTDRLIEGSTMRVGISAQGYPFPAPT
                     GIADYTLRKPGEKTLLSAVARYGPFGAQTGQLDLSLPIAGRELGVQAGIGYNNDNQPF
                     G"
BASE COUNT          656 a         1235 c         1306 g          673 t
ORIGIN      
        1 ggttggagcg tcgctccctg catcctcacc cagcggagct tccttcagcg ccgttcagcc
       61 tggacgtcgc ggtccgcgcg ggcgccgagc ggctgcaact gagcttccgg ctgaccgggc
      121 cgatcgagca gcttcgggtg ccgtcgccct cagcgccagc gcgccgcgac aatctgtggc
      181 agcatacctg cttcgaggca tttctgagcc tggatggcgg atatctggag ttcaaccttt
      241 cgccgtcgac ccaatgggcg gcctattgct tctcgggtta tcgcgcgggc atgtcggaac
      301 tggaggtggc cgcgcccggg atcgcggtgt cccgcaccga ctgcttgctg gaactcgacg
      361 ccgaccttgc cctgccggcc ggtctcgtgt cacgccgcct tggcctttcc gcagtgatcg
      421 aggacgtttc gggccgcaaa tcctactggg cgttggttca cccgcccggc ggcaggcccg
      481 attttcatca tgcggattgc tttgcgctcg aactgccgcc agcaagccac tcatgaaatt
      541 cggcatcgat cggctgcttg ccgaccctga tctttgcgca ccgctgcaag gcaagcgcgt
      601 cgccctgctc gcgcacccgg cctccgtcac cgcggacctg acgcactcgc tcgacgctct
      661 ggcggccgcg ggcgtgaacg tcagcgcggc cttcggcccg caacatggcc tgcgcggcga
      721 caagcaggac aatatggtcg aatcgccgga ttacgacgat ccggcgctcg gcattccggt
      781 gttcagcctg tacggtcagg tgcgccgccc gacggggcag atgatgagcg cctgcgacgt
      841 ggtgctggtg gacctgcagg acctgggctg ccgcatctac acgttcgtga cgacgcttcg
      901 ctacatgctc gaagcagccg cccagcacgg caaggcggtg tgggtgctcg atcggcccaa
      961 ccctgccggg cggccgatcg aaggactgac gctgcgcgaa gggtgggaaa gctttgtcgg
     1021 cgccggccca atgccgatgc ggcatggact gacgctcggc gaactcgggc tctggttcgt
     1081 cgaccggctc aagctggacg tggattatcg cgtgatcgaa atgcgcggct ggcggccggg
     1141 cgccgagccc ggctttggtt ggccgctgga ggagcgcatc tgggtgaacc ccagccccaa
     1201 tgcgcctaat ctcaacatgg cgcgcgccta tgccgggacg gtgatgctgg agggcaccac
     1261 gctgtcggaa gggcggggaa cgacgcggcc gctcgagatt ttcggcgcgc ccgacatcga
     1321 cgccaaatcg gtgatggcgg agatgcggca gctcgcgcct cattggctcc gtgggtgcgc
     1381 gctacgcgac atctggttcg agccgacctt ccataagcat gtcggcaagc tgtgcaacgg
     1441 cgtccatatc catgccgagg gacggttcta cgatcatcac gcgttccggc cttggcggct
     1501 gcaagcgctc gcgttcaagg cggtccggcg gctttacccg gattatccgc tgtggcgcga
     1561 tttcccgtac gaatatgaat tcgacaagct cgccatcgat gtgatcaacg gcggcccgca
     1621 acttcgcgac tgggtcgacg atgcgagcgc gacccccggc gacctcgatg cgcttacggc
     1681 acctgacgag caggcatggg cggaagagcg gcggcgcttc ctgctctatt gagcagccaa
     1741 gccgcgacca gcgccatcgg aatgccaacg cagacgatat gcgagaatag cgcgttgccg
     1801 aggctccagg cgtcgagctt gggatagcgc ccgaagcgcg ccggcacgac cagccaatac
     1861 atgacggtat aaatcgccag cccgtaagcg gcgccggaca agatgggacg ccgcagcagg
     1921 atcgagagac gctgggccgc gagcgcgaac actgtcgcca tgatcgtcat cagaccataa
     1981 tggacgccga gcccgagagc ggtcgctccg gcgccgccgt cgcgcatcgc atcgccgaat
     2041 ggaccgctcg ccacatagcg gaggatgcgt ccgggactgg ctcccgccat gccgccgaaa
     2101 acaaaggcgc tgaggatatc gagcgtgcct gaaacggccg tgcaggcgag aatcgcgcgt
     2161 ggcgtgcggc ccatcatcag tccctcccgt tatggaacag cctctcccag gcacgctttg
     2221 gcgtcaaggc acgcgaatcg tgccggaatc gagatgaaat gcgtgatgcg gctcttcgaa
     2281 aatttctctg tggggattaa ccaccatttt acgtttgcgg ggcagcattt aaccagcggg
     2341 cgatagggga tcgtccgccg catgacctgg ggagagggtc gcagtggaat cgaatgtgcg
     2401 ttactattcg cgacgtgccg catctgaagc cgctgccgcg gccaaggccg tgacgccgga
     2461 agcggccgtg cgccgccggg cgctggccga gatgttcgcc cgcaaggcgc aggaactctg
     2521 cgcctgaact gaactgcgcg gttggcggcg cttcgtgcgg ccgctaatcc gcgcgcatgg
     2581 ccaagcaacg cgccgaccag ctcctcgtgg atcgagcgct cgccgaaagc cgcacgcgtg
     2641 cccaggcgtt gattttcgcc ggcctcgtct tttcgggcga gcggcggatc gaaaagccgg
     2701 gccaaagcct ctccgaagat gcaccgttgg aagtgcgcgg tcgcgaccat ccctgggtct
     2761 cgcgcggcgg cgtaaagctc gcgcatggcc tcgatcattt cggctgggac gtgaccgatg
     2821 tggtcgcgat cgacgtcggg tcgtctaccg gcggcttcac cgatgtgctg ctgacccgtg
     2881 gggcagcgcg ggtctatgcg gtggacagcg gcaccaacca gctcgcctgg aagctgcggc
     2941 aggacccaag ggtggtcgtg ctggaacagc ttagcgcacg gctactgacg cccgaacata
     3001 ttcccgaacc ggtcgatctg atcgtctgcg acgcgagctt catctcgctc gccaaggtgc
     3061 tggagacgcc gctgactttt gtgcgaccgg cggcgcggct gatggcgttg atcaagccgc
     3121 aattcgaggc cgggcgcgag gaagtgggga agggcggcgt ggtgcgcgat cccgccgtgc
     3181 acgatcgggt ttgccgcgaa gtcgcgggtt ggctggagac ttgggggtgg agcgtggacg
     3241 gcgtcgtgcg cagcccgatc accgggccgg aaggaaatgt cgaattcctg atcgcggcaa
     3301 ggcgcggctg atgttcctcg tcgaaccgag ctgcggctgg tcgaatggca cgcgcgcata
     3361 tcccgcccct gattacgtct gtaaccatgg acattctggc tcgctccgca gcacttgcgg
     3421 ccctgctttg ctcgaccgct gcggtggcgc agcgcacgac cgacaatgcg acgacgcaat
     3481 ccaaggacgc gttcggcaag cgcgtcggcg acgagcagat cggcatctat aatccgttcg
     3541 acgtgcgcgg cttctcagcg gtggacgctg gcaatacgcg aatcgaaggc ctgtatttcc
     3601 agcagcaggc ggacccgacc gatcggttga tcgaaggctc gacgatgcgc gtcggcattt
     3661 cggcccaggg ctatcctttc ccggcgccga cgggcattgc cgattatacg ctgcgcaagc
     3721 cgggcgagaa gacgctgctg agcgccgtcg cgcgctacgg cccgttcggt gcgcagacgg
     3781 ggcagctcga tctctcgctg ccgatcgcgg ggcgggagct cggggtacag gccggcatcg
     3841 gctataacaa cgacaaccag cctttcggcg
//
LOCUS       DASQVK010000263         4811 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_206573,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000263 DASQVK010000000
VERSION     DASQVK010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4811
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206573"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..786)
                     /locus_tag="VE567_05615"
     CDS             complement(<1..786)
                     /locus_tag="VE567_05615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010214664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYZ48357.1"
                     /translation="MDTDFYRIKRLPPYVIAEVNAMRAAARAAGEDIIDLGMGNPDLP
                     PPPHVVDKLCEVARKPDAHGYSASKGIPGLRRAQAGYYARRFGVELDPDREIVVTLGS
                     KEGLANLAQAITAPGDVVLAPNPSYPIHTFGFIIAGATIRSVPTTPDERYFESLERAV
                     HFTVPKPSVLVMGYPSNPTAEVVDLAFYERVIAFAKEHGLWILSDLAYSEIYFDDCPT
                     PSILQVPGAKDVAVEFTSMSKTYSMAGWRMGFAVGNANLIAALG"
     gene            complement(839..1789)
                     /locus_tag="VE567_05620"
     CDS             complement(839..1789)
                     /locus_tag="VE567_05620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease"
                     /protein_id="HYZ48358.1"
                     /translation="MAEWLYEAGIGEARAALVENGAIVEARIDREDARPRAGDILRAR
                     LRRIAAVAGRSDVELESGGRALLAPAPKGLTEGAPLFVEIVREAIPERANPKLPLARP
                     AEGPARPAPSLRERLLTTGVAMREVRAHGADDLEQAGWSELLEQAATGVVPFPGGLLR
                     IALTPAMTVIDVDGELPPGELSLRGAAAAGEAIRRFDIGGSIGVDLPTLASKQLRQAA
                     ADALDAALPQPFERTAVNGFGFLQIVRRRVRPSLLELVQADPVQTEALALLRRLEREP
                     LPGPEIVGAPPLVARLLSMRPDWLEELSRRRGRAIRIISS"
     gene            complement(1782..2357)
                     /locus_tag="VE567_05625"
     CDS             complement(1782..2357)
                     /locus_tag="VE567_05625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007014966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030428 - cell septum [Evidence IEA];
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family nucleotide pyrophosphatase"
                     /protein_id="HYZ48359.1"
                     /translation="MTRPKLILASASPRRLDLLARIGVVPDAVTPADIDETELNGELP
                     AGHAARLAAEKAAAVAEPGVLTLGADTVVAAGRRILPKAEDEATARRCLELLSGRRHR
                     VHSAVTLIDAEGRARHRLCTTIVTFKPLDAGEIESYVAGGEWHGKAGGYAIQGRAEAF
                     VRFLAGSHSGVIGLPLFETRALLLAAGYRLG"
     gene            complement(2374..2592)
                     /gene="infA"
                     /locus_tag="VE567_05630"
     CDS             complement(2374..2592)
                     /gene="infA"
                     /locus_tag="VE567_05630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008603741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HYZ48360.1"
                     /translation="MAKEELLEMRGQVVELLPNAMFRVRLENDHEILGHTAGKMRKNR
                     IRVLVGDEVLVELTPYDLTKGRITYRFK"
     gene            complement(2712..3014)
                     /locus_tag="VE567_05635"
     CDS             complement(2712..3014)
                     /locus_tag="VE567_05635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004207333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HYZ48361.1"
                     /translation="MRKLIIALSAAALTAPVAVVPTDTAAAAQYRTWRGKDGRIYCRR
                     PNGTTGLIIGGAAGALVGNAIAGGTTGTILGAAGGALLGREVQRSKARQRCAPLRR"
     gene            3161..3313
                     /locus_tag="VE567_05640"
     CDS             3161..3313
                     /locus_tag="VE567_05640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48362.1"
                     /translation="MNQLPLPDALSLLQAGAGLCLIALLARRRAARRDEWEGAVGKLS
                     GRVRED"
     gene            complement(3329..3997)
                     /locus_tag="VE567_05645"
     CDS             complement(3329..3997)
                     /locus_tag="VE567_05645"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HYZ48363.1"
                     /translation="MVTKFGKMFLSLGLIALAPAAQATVVSGALTGGSAFAHGGTFVK
                     LDPAAHPFTVGSDNFNTNNLYAFDEVQNFTLKHDLVANLGQTLIKAGTVISSQVVFFD
                     PLLKKTTAKGTVKFSSDVLAVISTQSALIASNYLGTPNVTYLDPLSVGLEPGIDFLKI
                     GAPHPTDLKIVTLNSDSPGDMVRVITLGTAVPEPATWASLALGFGLLGGVVRWRGRPT
                     LRLA"
     gene            complement(4125..4201)
                     /locus_tag="VE567_05650"
     tRNA            complement(4125..4201)
                     /locus_tag="VE567_05650"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4165..4167),aa:Met,seq:cat)
     gene            complement(4293..4407)
                     /gene="rrf"
                     /locus_tag="VE567_05655"
     rRNA            complement(4293..4407)
                     /gene="rrf"
                     /locus_tag="VE567_05655"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(4539..>4811)
                     /locus_tag="VE567_05660"
     rRNA            complement(4539..>4811)
                     /locus_tag="VE567_05660"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          852 a         1544 c         1584 g          831 t
ORIGIN      
        1 gccaagcgcc gcgatcaggt tcgcattgcc caccgcaaac cccatccgcc agccggccat
       61 cgaataggtc ttggacatgg acgtgaactc gacggcgacg tccttggctc ccggcacctg
      121 caggatggaa ggcgtcgggc aatcgtcgaa atagatttcg gaataggcca gatcggagag
      181 gatccacagc ccatgctcct tcgcaaacgc gatgacgcgc tcgtaaaagg cgaggtccac
      241 gacttcggcg gtggggttgg aggggtagcc catcacgagc accgacggct tgggcacggt
      301 gaaatggaca gcccgttcca gactctcgaa atagcgttcg tcaggcgttg tcggcacgga
      361 gcggatggtc gcgccggcga tgatgaagcc gaatgtgtgg atcggatagc tggggttggg
      421 cgccagcacc acgtcgcccg gcgcggtgat cgcctgggcc aggttggcaa gcccttcctt
      481 ggagcccaaa gtgaccacga tttcgcggtc cgggtcgagc tcgacgccga atcggcgggc
      541 gtagtagccg gcctgggcgc ggcgcagccc cggaatgcct ttcgaggccg aatagccatg
      601 cgcatcgggc ttgcgcgcga cttcgcataa tttgtcgacc acgtgtggcg gcgggggcag
      661 atcgggattg cccatgccga ggtcgataat gtcttccccc gccgcgcgtg ccgccgcacg
      721 catcgcgttc acttcggcga tgacataagg cggcagccgc ttgatgcggt agaagtcggt
      781 gtccatgaac cgcgccttac agcttcgcgc ggcaaggctc caccccgggg agctagggtc
      841 aggaggatat gatccggatt gcgcggcccc ggcggcggct aagctcctca agccaatccg
      901 gccgcatgct caggagacgc gcgacaaggg gcggcgcgcc aacgatctcg gggccgggca
      961 acggctcgcg ctccaggcgg cgcagtagcg ccagcgcctc ggtctgcacc ggatcggctt
     1021 ggaccagctc cagcagcgac ggccgcacgc ggcggcggac gatttgcagg aatccgaagc
     1081 cgttcacggc ggtgcgttcg aagggttggg ggagcgccgc gtctaacgcg tccgcggcgg
     1141 cctggcggag ctgctttgag gcaagcgtag gcaggtccac gccgatcgag cccccgatgt
     1201 cgaagcgacg gattgcctct cccgccgctg ccgcgccgcg caaactcagc tcgcccggcg
     1261 ggagctcgcc gtcgacgtcg atcacggtca tcgcaggcgt caacgcaatc cgcagcaggc
     1321 cgcctggaaa tggaacgacg ccggtcgcag cctgctccag cagctcggac cagccggctt
     1381 gctcgaggtc gtcggcgcca tgcgcccgaa cttcccgcat cgccacgccg gttgttagca
     1441 gccgctcgcg caatgatggc gccggcctgg ccggcccttc cgccgggcgc gcaaggggaa
     1501 gcttcgggtt ggcgcgttcg ggaatcgcct cgcgtacgat ctcgacgaaa agcggcgcgc
     1561 cttcggtgag tcccttgggc gccggggcga gcagcgccct gccgccgctt tccaattcta
     1621 cgtcgctccg tccggcgacc gcggcgatac ggcgcaagcg cgcccgaagg atgtcgccgg
     1681 cgcgcggccg tgcgtcctcc cggtcgatac gggcttcaac gatcgcaccg ttttcgacca
     1741 gcgccgcgcg cgcttcgccg atgccggcct cgtagagcca ctcagccaag ccgatagccg
     1801 gccgcgagca gcaatgctcg cgtttcgaac agcggcaggc cgataacgcc cgaatggcta
     1861 ccggcgagga agcggacgaa cgcctcggcc cggccctgga tcgcatagcc gccagccttc
     1921 ccgtgccatt cgccgccggc gacgtacgat tcaatttccc cggcatccag cggcttgaac
     1981 gtcacgatcg tggtgcacag gcggtgccgg gcgcggcctt cggcgtcgat cagcgtcacc
     2041 gcgctatgga cgcggtgacg gcggcccgaa aggagctcga gacagcgtcg cgccgtcgcc
     2101 tcgtcctcgg ccttgggcaa tatccgccgc cccgcggcca cgaccgtgtc cgcgcccagc
     2161 gtcagtacgc cgggttcggc caccgccgcg gccttctcgg ccgccagccg agcggcatgg
     2221 ccggccggaa gctcgccgtt cagctctgtc tcgtcgatgt ccgccggcgt caccgcatcg
     2281 ggcacgacgc cgatccgcgc gagcaggtcg agccgacgcg gactggcgga tgcgagaatg
     2341 agcttggggc gggtcaccga ccgcgaccgc gcgtcacttg aaccggtagg taatccggcc
     2401 cttggtcagg tcgtagggcg tgagttcgac gagtacttcg tcgccgacaa gcacgcgaat
     2461 gcggttcttg cgcatcttgc ccgcggtgtg gccgagaatc tcatggtcat tctccaggcg
     2521 cacccggaac atggcattgg ggagcagttc gacgacttgc ccccgcatct caagcagttc
     2581 ttccttagcc aagcatcagc ctttgtctgg ggtgaaaaat cgcgccgcca taacggacga
     2641 cgcgttaaaa gggaagcgag ccgccgatcc tggcaggaaa ggcggctcac aaacaggtcg
     2701 gggcgcaagg cctagcggcg aagcggcgca caacgctggc gcgctttgct gcgctgcacc
     2761 tcgcggccga gcaatgcgcc accggcggcg cccagaatcg tgccggtcgt cccgccggcg
     2821 atggcattgc cgaccagcgc gccagcggcg ccaccgatga tcaggccggt cgtgccattg
     2881 gggcgacggc aatagattcg cccgtccttg ccgcgccagg tgcggtattg cgctgccgcc
     2941 gccgtgtcgg tcggaacgac cgccactggc gccgtcagag ccgcggcgct gagggcgatg
     3001 atgagcttgc gcacggaaaa tatcctctcg ttcgttgcga tcccgatata tgcaacgccg
     3061 ttcaatgcac ccggttgcat gaacgctgga caacgttaac cctgcttgga gcatgatcgg
     3121 ttaactctgc cgcgccagaa gcagagcttg gagggacgcc atgaatcagt tgccgctgcc
     3181 cgatgcgctc agcctgcttc aggccggcgc aggcctttgc ctgatcgcct tgcttgcccg
     3241 gcgccgcgcc gcgcgccgcg atgaatggga aggcgccgtt ggcaagctga gcgggcgcgt
     3301 ccgcgaggac tgacccgctc cgattctctc aggcgagacg cagcgtgggt ctgccgcgcc
     3361 agcgaaccac gccgccgagc agcccaaagc caagcgccag agacgcccaa gtggccggct
     3421 ccggaaccgc agtgcccaac gtgatcaccc ggaccatgtc gccgggcgaa tcggagttca
     3481 gcgtgacgat cttgaggtcg gttgggtgtg gcgcgccgat cttcaggaaa tcaattcccg
     3541 gctcgagccc gacggagagc ggatcgagat aagtgacgtt gggagtgccg agatagttcg
     3601 aggcgatgag cgcggattgc gtgctgatca cggccagaac atcggagctg aacttcaccg
     3661 ttccttttgc agtggtcttt ttgagaagcg ggtcgaaaaa gacgacttgg ctgctgatca
     3721 ccgtgccggc cttgatcagg gtctggccca ggttggcgac caggtcgtgc ttcaaggtga
     3781 agttctggac ctcgtcaaag gcatagagat tgttcgtgtt gaagttgtcg gacccgacag
     3841 tgaaggggtg cgcggccgga tccagcttca cgaacgtccc cccatgggcg aacgcggagc
     3901 cgcccgtgag cgcgccggaa acgacggtcg cctgcgccgc cggagccagc gcgatcagac
     3961 cgagcgaaag aaacatcttg ccgaacttgg ttaccatgtc acttaccctc tgttacaaga
     4021 gcgtgacgtg tcaccgatgc atgacggcgg agcttctgtt ttgcgtcatt tgcatgactg
     4081 aaccattttg gcgcagtctc cccggcgagg ggacaaggtt tcggtggttg cgggggtagg
     4141 atttgaacct acgaccttca ggttatgagc ctgacgagct accgggctgc tccaccccgc
     4201 gccaagccac cgagagccgc ggagtcctgc tcgacgcggt cgaaattcga agacatgtga
     4261 atgggtttcc tctccggcgc gccggctgca aagcctggcg acgacctact cttccatcgc
     4321 ttaagcgata gtaccatcgg cgctgtctgg tttcacggcc gagttcggga tgggatcggg
     4381 tgggtcacag acgctatggc caccaagcta tggaggcggc gcgctggggg aacccatcaa
     4441 agtaggactt tgatgagatc cttcggaggg ggttctaatc gatgcccgtg caggctgaac
     4501 tatatccgcc accagcgctg tcgttgatgg tggggaactc tcaagcgcga atagagcaat
     4561 tagtatcggt tagctccacg cgttaccgcg cttccacatc cgatctatca acgtggtggt
     4621 cttccacggc tctatgaagt cttatcttga gggaggcttc ccgcttagat gctttcagcg
     4681 gttatcccgt ccatgcatag ctaccctgct gcaccgctgg cgcgatgaca agtccaccag
     4741 aggcatgttc accccggtcc tctcgtacta ggggcaactc ctctcaatta tcgacgccca
     4801 cggcagatag g
//
LOCUS       DASQVK010000264         3274 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_432367,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000264 DASQVK010000000
VERSION     DASQVK010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3274
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_432367"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(125..790)
                     /locus_tag="VE567_05665"
     CDS             complement(125..790)
                     /locus_tag="VE567_05665"
                     /inference="COORDINATES: protein motif:HMM:NF025137.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4167 domain-containing protein"
                     /protein_id="HYZ48364.1"
                     /translation="MINNRQGGGRRRGRGGQRPQGNPGQPGGGNRIDNRARGNAQQLH
                     EKYKNLARDSQMAGDRVTTEYYLQFADHYFRVLNETRARFEDQRRQRDDVDDDFEADE
                     PEFAAHDNNQRRDRNDNYKREEEARPAPAPAPAEAVEQQAANDEQSDDGERRARRGRR
                     RREAPEQNEQAEAIDADRLPPAIAIGNGADEAEEAAAAPRRRGRRPRAETANDTVEVP
                     PAA"
     gene            complement(1059..1859)
                     /gene="prmC"
                     /locus_tag="VE567_05670"
     CDS             complement(1059..1859)
                     /gene="prmC"
                     /locus_tag="VE567_05670"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017499490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HYZ48365.1"
                     /translation="MNEATRLLASVSDTPRLDAELLLAHALGITREALLLGPERPAPL
                     GFGALLERRLAHEPVAYITGTKSFWTLDLRVTPAVLIPRPDTETLIEAAIEHFRGRAP
                     ATLLDLGTGSGALLLAGLDEWRTAWGLGVDRSAAALAVARGNARRLGLGERAAFVEGD
                     WAAAIDARFDLILCNPPYVQADAALPPQVAAYEPASALFAGAHGLDAYRALAPQLARL
                     LAPGGMVVLEIGADQREPVAALMQAENFVVRCKPDLAGRDRCLALTGD"
     gene            complement(1982..3055)
                     /gene="prfA"
                     /locus_tag="VE567_05675"
     CDS             complement(1982..3055)
                     /gene="prfA"
                     /locus_tag="VE567_05675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HYZ48366.1"
                     /translation="MTTISAERIAQIEARRDELQALMASGALAPERFVQVSKEYAELE
                     PVAAAAGEVRRLRTELGVLAEMANDSDPDIRQMAIEETASIRERLPAAERDLAVKLLP
                     RDAADERAAMLEIRAGTGGDEAALFAGDLFRMYQRYAENKGWRVELISASASELGGFK
                     EVVASVTGQGVFARLKYESGVHRVQRVPATESGGRIHTSAATVAVLPEAEDVDVHIDE
                     KDLRVDIYRSSGPGGQGVNTTDSAVRITHLPSGIVVIQQDERSQHKNRAKAMKVLRTR
                     LYELERERLANERAGARKSMVGSGDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEG
                     QLDELIDALIAEDQAARLANLDS"
     gene            complement(3060..>3274)
                     /locus_tag="VE567_05680"
     CDS             complement(3060..>3274)
                     /locus_tag="VE567_05680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HYZ48367.1"
                     /translation="KLREVAATDLAEGAFLIMVPWIGRNSKSARVNISLDKAMLAAID
                     QAAAMRHLTRSAFLAEAARNEIEGRR"
BASE COUNT          501 a         1133 c         1078 g          562 t
ORIGIN      
        1 cacatttcga tgattccgga aatatcgtaa tcctggcgtc tgtcaagcgg ggccgatcgg
       61 cgcggggcaa ataaaaaggg cgcccgccgg aaaagcggac gcccttttgt tgggtaaagc
      121 gaggtcaggc cgcgggtggg acttcgaccg tgtcgttggc cgtctcggcg cgcgggcgac
      181 ggccgcggcg gcgcggcgca gcggccgcct cttcggcctc atcggcgccg ttgccgattg
      241 cgattgcagg cggcaggcga tcggcgtcga tcgcctcggc ctgttcgttc tgctcgggcg
      301 cctcgcggcg gcggcggccc cgccgggccc gacgctcgcc atcgtcgctc tgctcgtcat
      361 tggcggcctg ctgttcgacc gcttcggccg gagccggggc gggcgccgga cgggcctctt
      421 cctcgcgctt ataattgtcg ttccgatcgc gccgctggtt gttgtcgtgc gcggcaaact
      481 cgggctcgtc ggcctcgaaa tcgtcgtcga catcgtcccg ctgccggcgc tggtcttcga
      541 agcgcgcgcg cgtctcgttg agaacacgga aataatggtc cgcgaactgg agataatatt
      601 cggtggtcac gcggtcgccg gccatctgcg agtcacgcgc gagattcttg tacttctcgt
      661 gaagctgctg ggcgttgccg cgcgcacgat tgtcgatgcg gttgccgccg cccggctgac
      721 ccggatttcc ttgcggccgc tggccaccgc ggccgcgacg gcggccacca ccctgacgat
      781 tgttgatcaa aggatgtcct ctacttcacc caaaaaatgt ctcggctccg ccgcttcgca
      841 cgcgcggtcg tgagctgagc ggtgccgtct ggcgcacgct cccgccattc gccagcgcag
      901 ccgattcgcc gcgtcttagc tgtgggggtg gacaggcccc tctcgtgtcg ccgtattggc
      961 gcgctgccga aaagctgcct gcccttctgc atccctatct agtggctcgg cctcgaaaat
     1021 ccaagcctaa agtagagact gaatcttgcc gatctgtgtc aatcgccggt caaggcaaga
     1081 caacggtcgc gccccgccag gtccggcttg caccgcacaa cgaaattttc cgcctgcatc
     1141 agcgcggcaa cgggctcgcg ctgatcggcc ccgatctcca acaccaccat cccgcccggc
     1201 gcgagcaggc gggcgagctg cggcgccagc gcgcgatagg cgtcgaggcc atgcgcgccc
     1261 gcaaacaggg ccgaggccgg ctcataggcc gcgacttgcg gcgggagcgc ggcgtccgcc
     1321 tggacatagg gcggattgca caggatcagg tcgaatcggg cgtcgatcgc cgccgcccaa
     1381 tcgccctcga cgaaagcggc gcgctcacca aggcctagtc gcctggcatt gccgcgcgcc
     1441 accgccagcg ccgccgccga gcgatcgacg cccagtcccc acgcagtgcg ccactcatcg
     1501 agccctgcaa gaagcaacgc ccccgagccg gtgccgaggt cgagcaaggt cgccggcgcg
     1561 cggccgcgga aatgctcgat ggcggcttcg atcaaagtct cggtgtccgg gcgcgggatc
     1621 agcacggccg gcgtcacgcg caggtcgagc gtccagaagc ttttcgtacc ggtgatgtac
     1681 gcaacgggct catgcgcgag gcggcgctcg agtagcgcgc cgaagcccag aggcgccggc
     1741 cgttcggggc cgagcagcag cgcctcgcgc gtgatgccga gcgcgtgggc aagcagcagc
     1801 tcggcatcca gccgcggcgt atcgctgacc gaggcgagga ggcgggtggc ctcgttcagg
     1861 gtcgggacaa tccgcccttc cccgtccgct tcaagcgaag tcgagacgcg ttcaggcacg
     1921 gcgccaatcg tttcccgact tcgcccgaaa cgaaccgaac ccaaagaaac cggaacccac
     1981 ctcagctatc cagattcgcc agccgcgccg cctgatcctc ggcgatgagc gcgtcgatca
     2041 gctcgtcgag ctggccttca aggatttcgg gcaggcggtg gagcgtcagg ttgatgcggt
     2101 ggtcggtgac gcggccttgc gggaagttat aagtgcggat ccgctcggag cggtcgcccg
     2161 agccgaccat cgacttgcgc gcgccggcac gctcgttcgc cagccgctcg cgttccagct
     2221 catagaggcg cgtgcggagc accttcatcg ccttggcgcg gttcttgtgc tgcgagcgct
     2281 cgtcctgctg aatgacgacg atgccgctgg gcaagtgggt gatccgcacg gccgaatcgg
     2341 tggtgttcac gccctgcccg ccggggccgg acgagcgata gatatcgacc ctcaggtcct
     2401 tctcgtcgat atgcacatcg acatcctcgg cctcgggcag caccgccacg gtcgccgcgg
     2461 acgtgtggat gcgcccaccg ctttcggtgg cgggaacgcg ctgcacgcgg tgcacgccgc
     2521 tttcgtattt gagccgcgcg aacacgccct ggccagtgac gctcgccacc acttccttga
     2581 agccgccgag ctcggacgcg ctggcggaga tcagctcgac gcgccagcct ttgttctcgg
     2641 catagcgctg gtacatgcga aacagatcgc cggcgaaaag ggccgcttcg tcgcccccgg
     2701 tgccggcgcg gatttcgagc atcgccgcgc gctcgtcggc cgcgtccctg gggagcagct
     2761 tgacagccaa atcccgctcc gccgccggga gcctctcccg gatcgaggcg gtctcttcga
     2821 tcgccatctg gcgaatgtcg ggatcgctgt cgttcgccat ttcggcaagc acgccgagtt
     2881 cggtgcggag acgccgcact tcgcccgccg ccgccgcgac cggctccagc tcggcatatt
     2941 ccttcgagac ctgcacgaac cgctccggcg ccagtgcgcc ggaggccatc aacgcctgca
     3001 actcgtcccg ccgcgcctcg atctgcgcga tccgttcagc agagatagtg gtcatcggct
     3061 tagcggcggc cttcgatttc gttgcgcgcg gcctctgcca ggaaggcaga gcgcgtgagg
     3121 tgccgcattg ccgccgcctg atcgatcgcc gccagcatcg ccttgtcgag cgagatattc
     3181 acgcgcgccg acttgctgtt gcgcccgatc cacgggacca tgatcaggaa cgctccttcg
     3241 gccagatcgg tagcggccac ctcgcgaagc tttt
//
LOCUS       DASQVK010000265         4657 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_80443, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000265 DASQVK010000000
VERSION     DASQVK010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4657
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80443"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..725
                     /locus_tag="VE567_05685"
     CDS             <1..725
                     /locus_tag="VE567_05685"
                     /inference="COORDINATES: protein motif:HMM:NF020976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alkaline phosphatase D family protein"
                     /protein_id="HYZ48368.1"
                     /translation="FHEMYPMRESIVEPGRVYRTINYGPHLDVFMLDERSYRGPNGPN
                     LQTAYGPDSYFIGPDQLAWLKRGLLNSHATWKVIASDMPLSIIVYDDAANKKGSEAFA
                     QGDGPPRGRELEIAEILRFIKSAGIVNTVWLTADVHYAAAHYYNPDKAQFQEFDPFWE
                     FVSGPLHAGTFGPNELDNTFGPEVKFIKAPGADRQNLPPSAGMQFFGHVKIDGRTGQM
                     TVTLRDRADVALWSTTLDPKPV"
     gene            complement(756..1109)
                     /locus_tag="VE567_05690"
     CDS             complement(756..1109)
                     /locus_tag="VE567_05690"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYZ48369.1"
                     /translation="MPNDVLIVEDDPLIALDFEDTILGFGVKMVRTATSVAKALDMIA
                     DRPPDFALLDVGLIREKTFAVAERLDSLKVPFVFVTGYGADVSLPAALASKPRLAKPC
                     SSEALEAALRRRLQT"
     gene            1381..2088
                     /locus_tag="VE567_05695"
     CDS             1381..2088
                     /locus_tag="VE567_05695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008831430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HYZ48370.1"
                     /translation="MRRLRDNDFALIAPHLISVGANAGDLLYSPGDDVETVHFPCGPS
                     LISYLVPNEDGRDVETILVGREGAVGGIVSQGYLPAYTRITVKFGGPFVRLPVGKLEL
                     AKNASPSLRNIFARYADCMLAQIFQSTACNAIHSIEQRTAKWIISAMERTNGNGVVPL
                     THDQLATLLGVGRSYTSRVIQSFKAEAVLDTRRGSILIRNLDALRLRSCLCNEAVKNH
                     FEEVLRGVYPSEEGDSA"
     gene            2418..4244
                     /gene="typA"
                     /locus_tag="VE567_05700"
     CDS             2418..4244
                     /gene="typA"
                     /locus_tag="VE567_05700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003050854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HYZ48371.1"
                     /translation="MNLRNVAIIAHVDHGKTTLVDRLLQQSGTFRENQKVAERAMDSN
                     DLERERGITILAKAASVQWKDTRINIVDTPGHADFGGEVERILNMVDGALVLVDAAEG
                     PLPQTKFVVSKALKVGLKPIVVINKVDRPDARPTEVTNEVFDLFAALDASEEQLDFPI
                     LYGSAKQGWMADSPEGPKDQGMQPLFDLIVRHVAPPRVEDGPFRMIGTILEANPYLGR
                     IITGRITSGVIKPNQAVKVLSADGKLIESGRLTKILAFRGIERTPLEEAEAGDIVAIA
                     GLTKGTVADTFCDPSVDTPLPAQPIDPPTVSMSFIVNNSPLAGTEGDKVTSRMIRDRL
                     MREAEGNVALRVVEAADKDSMEVSGRGELQLAILIETMRREGFELSVSRPRVVLKKNE
                     ATGQLEEPIEEVVIDVDEEHSGVVVQKMSERKAEMIEMRPSGGNRLRLVFYAPTRGLI
                     GYQGELLTDTRGTAIMNRLFHGYAPYKGEIQGRRNGVLISNDQGEAVAYAMFKLEDRG
                     PMMIEPGWKVYKGMIVGEHTRENDLEINVLKGKQLTNIRTTSKDEAVRLTPPIRMTLE
                     KALAYIEDDELVEVTPKSIRLRKKHLDPNDRKRAEKAKEAVA"
     gene            4331..>4657
                     /locus_tag="VE567_05705"
     CDS             4331..>4657
                     /locus_tag="VE567_05705"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYZ48372.1"
                     /translation="MPFPSSVDVAIIGAGAAGLGAANALKDSGLSVIVLEARDRVGGR
                     AHTIQAAPNVLFDVGCGWLHSADQNSFVPIAEQLGFEIDRTLPPWRDRAYGDAFPEAE
                     REEFFAA"
BASE COUNT          915 a         1507 c         1415 g          820 t
ORIGIN      
        1 ccttccacga aatgtatccg atgcgcgaaa gcatcgtcga acctggccgg gtctatcgca
       61 ccatcaatta cggcccgcat ctcgacgtct tcatgctgga cgagcgcagc tatcgcggcc
      121 cgaatggccc gaacttgcag acggcgtacg gtcccgacag ctacttcatc ggcccggatc
      181 agctcgcctg gctgaagcgc gggctattga attcgcacgc cacctggaag gtgatcgcct
      241 ccgacatgcc gctcagcatc atcgtttacg atgatgcggc caacaagaag ggttcggaag
      301 ccttcgcgca aggcgacggc ccgccgcgcg gccgcgaatt ggagatcgcg gagattctgc
      361 gcttcatcaa gtccgcaggt atcgtcaaca cggtgtggct gacggctgat gtgcattacg
      421 ccgccgcgca ctactacaat ccggacaagg cgcagttcca ggaattcgat ccgttctggg
      481 aattcgtctc cggcccgctg catgccggga cgttcggccc gaacgaactc gacaacacct
      541 ttggcccaga ggtgaaattc atcaaggcgc ccggcgccga caggcagaac ctgccgccat
      601 ccgccggcat gcagttcttc ggccatgtca aaatcgacgg caggacgggc cagatgacgg
      661 tgacgctgcg cgatcgcgcc gacgtcgcgc tgtggtcgac cacgctggac ccgaagccgg
      721 tgtgagcatc cggcttctcc cggcggcgca gcacatcacg tctgcaaacg tcgccgcagc
      781 gccgcctcca gcgcttcgct cgagcagggc ttggccagcc gcggcttgct tgcgagcgcg
      841 gccggcaggc tgacgtcggc gccatagccg gtgacaaaca caaacgggac ttttagcgag
      901 tccagtcgct cggcgaccgc aaaagtcttt tcgcggatca gcccgacatc cagcagcgcg
      961 aaatcgggcg ggcggtcggc gatcatgtcg agcgccttgg ccacgcttgt cgccgtccgc
     1021 accatcttca ctccgaagcc gagaatcgtg tcctcgaaat cgagcgctat gagcggatcg
     1081 tcctctacta tcagaacgtc attgggcatg tcgtcgggtt ccatggtctc gccgggccaa
     1141 agggttgcga tgctcgaaag ctccggcggg aagcccgaag aggaactgga aatccggtgc
     1201 cgttgagcac accggcagtt cccgaattga aaccatcata gccgcagggc gttgtctgtt
     1261 cacttgtgaa cataaaacca cggccgcagc cgttatgctg cgctcgggaa caggggacct
     1321 tcgatgctga cgcgacgcga ccaggcggca acggtcgagg aacgaccttt taacaatctg
     1381 ttgcggcgcc tgcgcgacaa tgattttgcg ctgatcgcac ctcatctcat atcagttggt
     1441 gccaatgccg gtgacctgct ctacagccca ggcgacgacg tcgagaccgt gcattttccc
     1501 tgtggcccaa gcctcatctc gtacctggtg ccgaatgaag acggccgcga cgtcgagacc
     1561 attctggtcg gccgcgaggg tgcggtcggc ggcatcgtca gccaaggcta tttgccggcc
     1621 tatacccgca tcactgtgaa gttcggtggc ccctttgtgc ggctaccagt cgggaagctg
     1681 gagcttgcga aaaacgcgtc gccctcgctg cgcaacatct tcgcgcgcta tgccgactgc
     1741 atgctggccc agatctttca gtcgaccgcc tgcaacgcca tccattcgat cgagcagcgc
     1801 acggcgaaat ggatcatctc ggcgatggag cgcaccaacg gcaacggcgt ggtgccactg
     1861 acacatgatc aactcgccac gttgctgggc gtcggccgca gctacaccag ccgcgtcatc
     1921 cagtcgttca aggccgaagc cgttctggac acccgccgcg gctcgatcct gatccgcaat
     1981 ctggatgcgc tacggctgcg ctcgtgcctg tgcaacgagg cggtaaagaa ccattttgag
     2041 gaagtgctgc gcggggtcta tccgagcgaa gaaggagatt ccgcctgacc aacactgccc
     2101 tgtcctccac tatggtttga ttgccggtat tgcgccgtac ggcccacgcc ggccatcccg
     2161 taaaagcacg tcatttcgaa ccaaaatcga tgcccagcac accaacaaac cattgttttt
     2221 tggcgttttc tgactatatt gcagcgcaac gcgtaaggtt tgcccggtcc ttttggccgg
     2281 gcttcctttt tgggcccaag ggtcttgggc tcaagggtcc gccaaaattt ctggttttcc
     2341 agcacgatcc ggaaaagtgg gtcccggttt tccggcgaga tcgcgctcaa aaccaacgca
     2401 cgaccagaag aagagccatg aaccttcgta acgtcgccat tatcgcccac gtcgaccacg
     2461 gcaagaccac cctcgtcgat cgcctgctgc agcaatccgg cacctttcgc gagaaccaga
     2521 aggtcgccga gcgcgccatg gactccaacg atctggagcg cgagcgcggc atcaccatcc
     2581 tggcgaaggc ggcctcggtg cagtggaagg acacccgcat caacatcgtc gacaccccag
     2641 gccacgccga tttcggcggc gaggtcgagc gcatcctcaa catggtggac ggcgcgctgg
     2701 tgctggtcga cgccgccgag ggtccgttgc cgcagaccaa gttcgtggtg tcgaaggcgc
     2761 tcaaggtcgg cctcaagccg atcgtcgtca tcaacaaggt cgaccgtccc gacgcgcggc
     2821 cgaccgaagt caccaacgag gtgttcgatc tgttcgcggc gctcgacgcc agcgaggagc
     2881 agctcgactt cccgatcctc tacggatcgg ccaagcaggg ctggatggcg gacagccctg
     2941 agggcccgaa ggaccagggc atgcagccgc tcttcgacct gatcgtgcgc cacgtcgcgc
     3001 cgcccagggt tgaggacggc ccgttccgca tgatcggcac cattttggag gccaatccct
     3061 atctcggccg catcatcacc ggccgcatca cctccggcgt gatcaagccg aaccaggcgg
     3121 taaaggtgct ctcggctgac ggcaagctga tcgaaagcgg ccgcctgacc aagatcctcg
     3181 ccttccgcgg catcgagcgc acccccctcg aggaagccga ggccggcgac atcgtcgcga
     3241 tcgcgggcct gaccaagggc accgtcgccg ataccttctg cgatccctcg gtcgatacgc
     3301 cgctgccggc gcagccgatc gatccgccga ctgtgtcgat gtcgttcatc gtcaacaact
     3361 ccccgctcgc cggcaccgag ggcgataaag tgacgagtcg catgatccgc gaccgcctga
     3421 tgcgcgaggc ggagggcaac gtcgcgctgc gcgtcgtcga ggccgccgac aaggattcga
     3481 tggaagtttc cggtcgtggc gaattgcagc tcgcgattct gatcgagacc atgcgccgcg
     3541 aaggctttga gctctcggtg tcgcgtccgc gcgtggtgct gaaaaagaat gaggccaccg
     3601 gtcaactcga agagccgatc gaggaagtcg tgatcgacgt cgacgaggag cattccggcg
     3661 tcgtggtgca gaagatgagc gagcgcaagg ccgagatgat cgagatgcgc ccctccggcg
     3721 gcaatcgcct gcggctcgta ttctacgcgc cgacgcgcgg cctgatcggc tatcagggcg
     3781 aattgctcac cgacacccgc ggcaccgcga tcatgaaccg cctgttccac ggctacgccc
     3841 cgtacaaggg cgagatccag ggccgccgca acggcgttct gatctccaac gaccagggcg
     3901 aggcggtggc ctatgcgatg ttcaagctcg aagaccgcgg cccgatgatg atcgagccgg
     3961 gctggaaggt ctacaagggc atgatcgtcg gcgagcatac ccgcgagaac gacctcgaga
     4021 tcaacgtgtt gaagggcaag cagctcacca acatccgcac cacttcaaag gacgaggcgg
     4081 tgcgcctgac cccgccgatc cggatgacgc tggaaaaggc gctcgcctac atcgaggacg
     4141 acgagctggt cgaagtgacg ccgaaatcga tccgcctgcg caagaagcac ctcgacccga
     4201 acgaccgcaa gcgcgcggaa aaggccaagg aagcggtagc gtagggacgc gagtagcgaa
     4261 tggtgagtgg cgaatagggc cgccgttact atatgctgtt cgctattcgc cactgaccat
     4321 tcgccctttc atgccctttc cctcctcagt cgacgtcgcg atcattggtg cgggcgccgc
     4381 aggcctcggt gcggccaacg ctctaaaaga ttccggtctt tcggtgatcg tgctggaagc
     4441 ccgcgaccgc gtcggcgggc gggcacatac catccaggcg gcgccaaacg tcctgttcga
     4501 cgtcggctgc ggctggctgc attcggcgga ccagaactcc ttcgtgccga tcgccgagca
     4561 gctcggcttc gagatcgatc ggacgctgcc gccctggcgc gaccgcgcct atggcgatgc
     4621 tttcccggaa gccgagcgcg aagaattctt cgccgcg
//
LOCUS       DASQVK010000266         2896 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_16963, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000266 DASQVK010000000
VERSION     DASQVK010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2896)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2896)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2896
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16963"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            99..494
                     /locus_tag="VE567_05710"
     CDS             99..494
                     /locus_tag="VE567_05710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013832648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OB-fold domain-containing protein"
                     /protein_id="HYZ48373.1"
                     /translation="MRAIAEGLFTDETPPRLVGGRDRQSGRIVFPCPAGSAFEPVPLR
                     RDGRLWSWTVQRYRPKTPPYAGPESFEPWIVAYVELPGEVIVEARLVDVAFDQVRIGM
                     PLELVQVPLDPDAVEKVLIPAFAPAGETA"
     gene            491..1651
                     /locus_tag="VE567_05715"
     CDS             491..1651
                     /locus_tag="VE567_05715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013832649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HYZ48374.1"
                     /translation="MSDVCIVGVGIHPFGRSDALSGVEQGVFAVREALADAGVEWPQI
                     QFAYGSSDSAGNPDTMVDRLGLTGVQFINVRNGCAAGGSALFSAQMAIKSGEFELGLA
                     VGFDKHPRGAFNALPSEYNLPDWYGAAGYMVTTQFFAAKIARYMSMFGISHESLGRVA
                     EKAFRNAVHAPHAWRRHPVPLDEILNAPLISDPYTKYMFCSPAEGGVALVLASEKKAR
                     ELGKPLVRLKAATMRTRPPHSFEVFAPSIDVVAEDTVPRGTASRIASADAFRLAGIGP
                     GEIAVAQLQDTEAGAEIMHMAENGFCEDGEQERWIAEGRTEIGGVLPVNTDGGCLACG
                     EPIGASGLRQVYENVVQLRGHGGGRQVPNNPKTAYSHVYGAPGVSAVTILER"
     gene            1657..2865
                     /locus_tag="VE567_05720"
     CDS             1657..2865
                     /locus_tag="VE567_05720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013832650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYZ48375.1"
                     /translation="MDIELSPEDIAFRDEVRAFLGEKLPQAIKDGTAATPSVFVEPEI
                     GQAWNAVLHARGWLGYQWPVEHGGTGWTPLQRYLFEKECAAAGAPNLTVLGLKLLAPV
                     VWTFGTEAQKQRYLPAILTGADYWCQGFSEPGAGSDLASLQTRAIREGDSYRVNGSKI
                     WTTHAHHANRMFTLVRTNPDVKKQAGISFLLIDLDSPGVSVRPILTVAGDHEVNQVFL
                     EDVIVPAENLVGEEGQGWTIAKFLLENERGGSCHAPKLAYDLDQIELAARKETDSRGV
                     PLADDPDWKRRVARIRLCVDALDMVELKIVAEISKGRPPGPQTSLTKLLASNLRQDID
                     LLAVDLFGLAGLQLETARPFYGGHASEPIHSKAAQVASARYLNSRAWSIFGGTNEVQS
                     TIIARSVLGL"
BASE COUNT          521 a          920 c          945 g          510 t
ORIGIN      
        1 atttggccga tcctagcgtt ttgatgagtc accatcgcgg tgcgggcgtg cgtaaaccgt
       61 atgagagaaa tgagtcgatc caccggaacg ggaacgaaat gcgcgcgatt gccgaaggcc
      121 tgtttaccga cgagacgccg ccgcggctgg tcggtggccg tgaccggcaa tcgggtcgca
      181 tcgtgttccc ttgccccgcc ggaagcgcat tcgaaccggt gccgctgcgc cgtgacgggc
      241 ggctgtggtc gtggaccgta cagcgttatc gaccgaagac gccgccctac gcaggtccgg
      301 aatccttcga gccctggatc gttgcctatg tcgaattacc cggcgaggtc atcgtcgagg
      361 cgcggcttgt cgatgtcgcg ttcgaccagg tgcgcatcgg catgcccctg gaactggtcc
      421 aggttccgct cgacccagat gccgtagaga aagtgctgat tccggccttc gcccccgcag
      481 gagaaacggc gtgagcgacg tctgcatcgt cggcgtcggc atccacccgt ttggtcgcag
      541 cgatgcactc tcaggggtcg agcagggcgt attcgcggtg cgcgaggcgc ttgccgacgc
      601 gggcgtggag tggccgcaaa ttcaattcgc ctacggcagc tccgactcgg ccggcaatcc
      661 cgacaccatg gtcgaccggc tcgggctgac cggcgtacaa ttcatcaatg tccgcaatgg
      721 ctgcgcggca ggcggctcgg cgctgttcag cgcccagatg gcgatcaagt cgggggaatt
      781 tgagctcggt ctcgcggtcg gctttgacaa gcacccacgc ggcgcgttca acgcgctgcc
      841 ctccgaatac aacctgccgg actggtacgg cgcagcgggc tacatggtta cgacgcagtt
      901 cttcgcggcc aagatcgcgc gctacatgag catgttcggt atctcgcatg aatccctcgg
      961 acgtgttgcc gagaaggcgt tccgcaacgc cgttcatgcg ccgcacgcct ggcgccgcca
     1021 tccggtgccc ttggatgaga ttctcaacgc gccgctgatt tccgatcctt ataccaagta
     1081 catgttctgc tcgcctgccg agggtggcgt cgccctggtt ctcgcgagcg agaagaaggc
     1141 gcgcgagctg ggcaagccgc tggtgcggct caaggccgcg accatgcgga cccgtccgcc
     1201 gcacagcttt gaagtattcg cgccctctat cgacgtggtg gcggaggata ccgtcccgcg
     1261 cgggaccgcg tcccggatcg cctcggccga cgcgttccgg ctcgccggga tcggcccggg
     1321 cgagatcgcg gtggcccagc tccaggacac cgaggccggc gccgagatca tgcacatggc
     1381 cgaaaacggg ttctgtgaag atggcgaaca ggagcgctgg atcgccgaag gcaggaccga
     1441 gatcggcggc gtgctgccgg tcaacaccga cggcggctgc cttgcctgcg gcgagccgat
     1501 cggcgcctcg ggcctccgcc aggtctatga gaatgtggtg cagttgcgcg gacatggcgg
     1561 cggccgccag gtcccgaata atccgaagac ggcgtacagc cacgtctatg gtgcgccggg
     1621 ggtctccgcg gtgacgatcc tggaacgata acgaacatgg atatagagct ttctcccgaa
     1681 gatatcgcct ttcgcgacga ggtgcgcgca ttcctcggcg agaaactgcc gcaggcgata
     1741 aaggacggca ccgccgccac gccttctgtc ttcgtcgaac ccgagatcgg gcaggcatgg
     1801 aacgcggtgc tgcatgcacg cggctggcta ggctatcagt ggccggtcga gcatggcggc
     1861 accgggtgga cgccgctgca gcgctacctc ttcgagaagg aatgcgcggc ggccggagcg
     1921 cccaatctga cagtgctggg actgaagctg ctggccccgg tggtctggac tttcggcacc
     1981 gaggcgcaga agcagcgata cttgcccgcg atcctgaccg gcgcagacta ttggtgccag
     2041 ggcttctccg aacccggcgc gggatcggac cttgcgagtc tccagacccg ggcgatccgc
     2101 gaaggcgaca gctaccgcgt caacgggtcg aagatctgga ccacgcacgc gcaccacgcc
     2161 aaccgcatgt tcacgttggt gcgcaccaac ccagacgtga agaagcaagc gggcatttcg
     2221 ttcctgctga tcgacctcga cagtccaggc gtctcggttc gaccgatact taccgtggct
     2281 ggcgaccacg aggtcaatca ggtcttcctc gaagacgtga tcgttccggc agaaaacctc
     2341 gtcggtgaag aggggcaggg ctggaccatc gccaagtttc tgctcgaaaa cgaacgcggc
     2401 ggctcgtgtc acgcccccaa gcttgcctat gatctcgacc agatcgaact tgcagcgcgc
     2461 aaggagaccg acagtcgcgg cgttcctctt gccgacgacc ccgattggaa gcgccgagtc
     2521 gcgcgcatcc ggctttgtgt cgacgcgctc gacatggtcg agctgaagat cgttgccgag
     2581 atctcgaagg gccgtccgcc cggtccgcaa acctcgctga ccaagctctt ggcgtccaac
     2641 ctgcgccagg atatcgatct actcgcagtc gacctgttcg gccttgctgg cctgcagctc
     2701 gaaacggcac gcccgttcta tggcgggcac gcgtcggaac cgatccattc gaaagcggcg
     2761 caggtcgcgt ctgcccgcta tctgaacagc cgcgcctggt cgatcttcgg cggcaccaac
     2821 gaagttcaga gcaccattat tgccaggtcg gtcctggggc tgtgacagcg cggcggaaca
     2881 acaaggagag gattgt
//
LOCUS       DASQVK010000267         2141 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_206783,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000267 DASQVK010000000
VERSION     DASQVK010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206783"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2141
                     /gene="dnaE"
                     /locus_tag="VE567_05725"
     CDS             <1..>2141
                     /gene="dnaE"
                     /locus_tag="VE567_05725"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HYZ48376.1"
                     /translation="EEDYQKRLAFEIDVINRMNYAGYFLIVSDFIKWAKAHDIPVGPG
                     RGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQDRRGEVIDYVQ
                     QRYGREQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLAAAI
                     ESEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELVPLYRDPK
                     SDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLRQRNIHVDLATLPIDDAAS
                     YQMLARGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCARKH
                     GDEEPEYLHPLLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKKIRAE
                     MDKQRERFVSGAMQNNVPKGQAETIFELLAKFADYGFNKSHAAAYALVSYHTAYMKAH
                     YPVEFLAASMTLELNNTDKLSEFRSEAQRLGIKVEAPDVNRSGATFEVGENTIYYALA
                     ALKGVGPQAVELIVQERRKGAFTSLADFAARVNPRAINKRIIESLAAAGAFDTLEPNR
                     ARVFAGADAILAACQRNHEAAAIGQNDMFGGLADAPSIILPQTEPWLPAERLRREYDA
                     IGFFLSGHPLDDYATVLRRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNK
                     MGIMGLSDPTGHFEAVLFSEGLAQYRDVLEP"
BASE COUNT          386 a          718 c          682 g          355 t
ORIGIN      
        1 cgaagaggat tatcaaaagc gtctcgcctt cgagatcgac gtcatcaacc gcatgaacta
       61 tgcgggctac ttcctgatcg tctccgactt catcaaatgg gccaaggccc acgacattcc
      121 ggtcggcccg ggccgcggct cgggcgcagg ctcgctggtc gcctatgcgc tgaccatcac
      181 cgacctcgac ccgatccgct tcgggctgct gttcgagcgc ttcctcaatc ccgaacgcgt
      241 ctcgatgccg gacttcgaca tcgacttctg ccaggaccgc cgcggcgagg tcattgacta
      301 cgtgcagcag cgctacggcc gcgagcaggt ggcgcagatc atcaccttcg ggacgctgca
      361 ggcgcgcggc gtgctgcggg acgtcggccg cgtcctgcag atgccctatg gccaggtcga
      421 caaattgacc aagctggtgc cgcaaaatcc cgctgcgccc gtgaccttgg cggcggcgat
      481 cgagagcgag ccaaagctgc aggcgttccg cgacgaggac ccggtggtgg cgcgcgcctt
      541 cgacattgcc cagcgcctcg aaggcctgac ccgccacgcc tccacgcatg ccgccggaat
      601 cgtgatcggc gatcgcccct tgagcgaact ggtcccgctc taccgcgatc ccaaatccga
      661 catgccggtc acccagttca acatgaaatg ggtcgagccg gccggtctcg tgaagttcga
      721 cttccttggc ctgaagacgc tcaccgtgct cgacgtcgcg gtcaagctgc tcaggcagcg
      781 caatatccat gtcgatctgg caacgctgcc gatcgacgat gccgcaagct accagatgct
      841 ggcgcggggc gacgtggtcg gcgtgttcca ggtggaaagc cagggcatgc gccgcgcgct
      901 ggtcgatatg cggcctgacc gtttcgagga catcatcgcg ctggtcgcgc tctatcgccc
      961 cggtccgatg gccaacatcc cgacctattg cgcgcgcaag cacggcgacg aggagccgga
     1021 atatctccat ccgctgctcg agccgatcct gaaagagacg ttcggcgtca tcatctacca
     1081 ggaacaggtg atgcagatcg cgcaggtgat ggccggctat tcgctcggcg aagccgatct
     1141 attgcgccgc gccatgggca agaagatccg cgccgagatg gacaagcagc gcgagcgctt
     1201 cgtctccggc gcgatgcaga acaacgtgcc gaaggggcag gcggagacga tcttcgagct
     1261 gctggccaaa ttcgccgact acggctttaa caagagccac gccgcggcct atgcgttggt
     1321 ctcctaccac accgcctaca tgaaggcaca ttatccggtg gagtttctgg cggcgtcgat
     1381 gacgctggag ttgaacaaca ccgacaagct ttccgaattc cgctccgagg cgcagcggct
     1441 cggcatcaag gtcgaggcgc ccgacgtcaa ccgctccggc gcgaccttcg aggtcggcga
     1501 gaacaccatc tattacgcgc tggccgcgct gaagggggtc gggccgcagg ccgtcgaact
     1561 gatcgtgcaa gagcggcgca agggcgcctt cacctcgctc gccgatttcg ccgcgcgcgt
     1621 gaacccgcgc gcgatcaaca agcgcatcat cgagagcctc gccgccgccg gcgcgttcga
     1681 tacgctggag cccaaccgcg cccgcgtctt cgccggcgcc gacgcgatcc tggccgcctg
     1741 tcagcgcaat catgaagccg cagccatcgg gcagaacgac atgttcggcg ggttggcgga
     1801 cgcgccctcg atcatactgc cgcagaccga gccgtggctg ccggcggagc ggctgcggcg
     1861 cgaatatgac gcgatcggct tcttcctctc cggccatccg ctcgacgact acgcgaccgt
     1921 gctgaggcgc ctgcgggtgc agtcgtgggc ggaattttcg cgggcggtca aaaccggcgc
     1981 gaccgcgggc aaggtcgccg ccaccgtggt gtcgcgcatg gagcggcgca ccaagaccgg
     2041 caacaagatg ggcatcatgg gcctgtcgga tccgaccggc catttcgagg cggtgctgtt
     2101 ctccgaaggg cttgcgcaat accgcgacgt gctggagccc g
//
LOCUS       DASQVK010000268         2044 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_48436, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000268 DASQVK010000000
VERSION     DASQVK010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48436"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..573)
                     /locus_tag="VE567_05730"
     CDS             complement(<1..573)
                     /locus_tag="VE567_05730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYZ48377.1"
                     /translation="MDARSNEATRLPVRPTDTVLALIDPSRLRRECLKLALGQHNANW
                     RVVDMTTAQEAVRLAEAGQNFDLMLIGAATSEHVDLEEIETLRSMLPDTPIVVVAESE
                     NPHRARMILKAGTRGFLPTSLSLKVLMGALDLVMAGGVYVPSSLIEPSQPRAATEPAG
                     RGGAREPWSELTRRQRDVLNLISQGKSNKLI"
     gene            complement(975..1388)
                     /locus_tag="VE567_05735"
     CDS             complement(975..1388)
                     /locus_tag="VE567_05735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017666204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EVE domain-containing protein"
                     /protein_id="HYZ48378.1"
                     /translation="MAYWLLKSEPFKYSWDRLVKEGRTHWDGVRNHQAAANLRAMRVG
                     DRAFFYHSNEGLEIVGIAEIAKEYYPDPSDPSGRFGMVDIRPLRAVERPVTLQQIKAE
                     PRLAELALVRQSRLSVVPVSPEHWRLICDMAGTPP"
     gene            1741..1896
                     /locus_tag="VE567_05740"
     CDS             1741..1896
                     /locus_tag="VE567_05740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48379.1"
                     /translation="MRTKSDRSPLFLVSAIAVLAIVGLLAVKAPSWAGALSSYAVESS
                     YYVNEQH"
BASE COUNT          359 a          636 c          688 g          361 t
ORIGIN      
        1 gatcagcttg ttcgacttgc cctggctgat caggttgagc acgtcgcgct ggcggcgcgt
       61 cagctcggac cacggctcgc gggcgccgcc cctgccggcg ggctcggtgg cagcgcgcgg
      121 ctggctcggc tcgatgagcg acgacggaac gtagacgccg cccgccatga cgaggtcgag
      181 ggcgcccatc agcaccttga ggctgagcga ggtgggcagg aagccgcgcg tcccggcctt
      241 gaggatcatc cgggcacgat gcgggttctc gctctcggcg acgacaacga tcggggtatc
      301 gggaagcatg ctgcggaggg tctcgatctc ctccaggtcg acatgctcgg acgtcgccgc
      361 tccgatcagc atcaggtcga agttctgccc ggcctcggcg aggcggacgg cctcctgggc
      421 ggtcgtcatg tcgaccacgc gccagttcgc gttgtgctgg ccgagcgcca gcttcaggca
      481 ctcgcggcgc aggcggctcg ggtcgatgag ggcgagaacc gtgtcggtcg gccggacggg
      541 cagtcgggtg gcttcgttcg agcgagcgtc catcgggctt cgtctccagg ttgattggtc
      601 gcagcggacc gcgctgtccc cccaacggag caggaaaatg cgcgagcacc accgaacgga
      661 taagatgatt agcagttgaa tgacccaaat gaagtaataa attgtaatcc agagtaacag
      721 tttgtaacgc acaatataat gcgtccggac tgtttctaga cacctacaag taggtgcaac
      781 ccacgcgtcg gtagaggcgt gggggaaagc gttaaagatt taggaaagag cgtgccggtt
      841 gagcgttgaa cctatgccag ccgctcgggc gatcggcttg gtggggacaa ccaccgacaa
      901 tgcggcgcag catgccacga tcgaagaccc tgatgctatc tttttgaata aggtcgccga
      961 agccgccggc agggtcaggg cggggttccc gccatgtcgc agatgaggcg ccaatgctcg
     1021 ggcgagacgg gcacgacgga gagccgcgac tggcgcacca gcgccagctc cgcgaggcgc
     1081 ggctcggcct tgatctgctg cagcgtgacc ggccgctcga ccgcgcgcag cggccggatg
     1141 tcgaccatgc cgaaccggcc gctcggatcg ctcggatcgg ggtagtactc cttggcgatc
     1201 tcggcgatcc cgacgatctc caggccctcg ttcgagtgat agaagaaggc gcggtcgccg
     1261 acgcgcatcg cgcgcaggtt cgccgccgcc tggtgattgc ggacgccgtc ccaatgggtg
     1321 cggccctcct tgaccagccg gtcccacgaa tacttgaacg gctcggattt cagcagccag
     1381 tacgccacgg cgcgttcacg ccgggcggcg ctggcggatc agcccgcctg ccggagtttc
     1441 ggatgtggcg tggaccatcg cagcgacccc tcccctcgcg tggtaaacgg gcccatgtct
     1501 agtgggcacc cgtgtccccg tgcaagtgct gaggccgggt gtcggccgct aacgcggcgg
     1561 ttcgggaatc gttgcccgcc gatctatcgc aggttgccac tttttcgacg cacttcgtcc
     1621 caaaattcac cgctatcctg ctgaaggatc gaaccgcttt tacgacctgt taatgttgcc
     1681 gggacaatat ccggttgaat taagaacctt gctcgaggag caatgaaaat ggcggcgaat
     1741 atgcggacca aaagcgaccg cagtccgctc ttcctggttt cggccatcgc cgtgctggcg
     1801 atcgtcggct tgctggcggt gaaggccccc tcctgggccg gcgcgctgtc gagctacgcg
     1861 gtcgaatcct cctactacgt caacgagcag cactgaccgg ccggtggcga aggcccgctc
     1921 agccgagcgg gtactccgcc tcgtcctcgt agatcggccc gctcttcgtg aggtagctcg
     1981 cgatgaggct gaaccgatcg acggcgaagg gctgcgcgcg gaacagcgcg tgctcggcca
     2041 ggta
//
LOCUS       DASQVK010000269         3410 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_143377,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000269 DASQVK010000000
VERSION     DASQVK010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3410)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3410
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143377"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1597
                     /locus_tag="VE567_05745"
     CDS             <1..1597
                     /locus_tag="VE567_05745"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HYZ48380.1"
                     /translation="QLAQYAAATPERVRAAMQKWLTRPMHALVVEPGPRGAYEESKSV
                     PRPATFKPAFYRQPDAPHATFAPAAAVDRSKLPEVGTIPDLKFPAVSRARLSNGIEIV
                     YAQRMATPTTRVVVSFDAGNAADPADRLGLESLTLSLLDEGTKTRNSTQIAEEQERLG
                     ATIGMSTSTDRTNVSLFALSPNLKPSVALLADILRNPVFAPAEVERLRNQQLVAIQSE
                     LTQPSGLAQRTLPPILFGPAHPYGRPTSGNGDPAIVSKLTRGDLVAFQQAWIRPDKAT
                     IFVVSDQPLDKVRSVLDAALGDWRGTGAPGVKAFTAAVPQPQPRIVLVDRPDSPQSLI
                     YGGVLTPLKGRDELIPYLAANDVLGGNFLSRLNMDLRETRGWSYGVNGNFRRMLEAVP
                     YFVSAPVQADRTGESLVAMREDMQTFLTSQGITPPEAERTINGFVRELPGSFETAADV
                     LGGMQNNVLYGRPDNYYDTVASRYRALTATAMDRAIRSALDPSKITWVVVGDAKLVKP
                     QLDRLGLPVEVKMAPQQTAVGAK"
     gene            1597..1899
                     /locus_tag="VE567_05750"
     CDS             1597..1899
                     /locus_tag="VE567_05750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007715534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48381.1"
                     /translation="MANVDGEYDCVTKSPLGEQKSVFTVKTDGNAFTGQNVGAQGTLD
                     VIDGKVDGNKLTWKMDMKVPMPMTLDCSATIEGDQFNGTVGAGAFGSFPMTGTRRA"
     gene            complement(1931..2992)
                     /locus_tag="VE567_05755"
     CDS             complement(1931..2992)
                     /locus_tag="VE567_05755"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HYZ48382.1"
                     /translation="MILPPGSTIGILGGGQLGRMLATAAAQLGYRTHIYAPEATGPAT
                     EVSAEWTQAAYEDEDALARFADRVGVVTYEFENVPPTALDRLEALVPIRPGKRSLEVS
                     RFRPAEKGLVRELGGQTAPYRAVETLEELRGAFAEIGAPAILKTSSLGYDGKGQARIG
                     DGADVETAWDAIGQAPSVLEGFVRFEAEFSVLLCRAESGDSVVWETPENVHANGILDM
                     STTPARALVLEQASEAIALARRVADELDHVGLLTLEFFATADGPVFNEMAPRVHNSGH
                     WTIEGAVTSQFENHIRAVCGLPLGSTARTGGRVEMRNLIGEAANDWAEILRDPEAHLH
                     LYGKHVRPGRKMGHVTRVF"
     gene            complement(2989..>3410)
                     /gene="purE"
                     /locus_tag="VE567_05760"
     CDS             complement(2989..>3410)
                     /gene="purE"
                     /locus_tag="VE567_05760"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013040543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HYZ48383.1"
                     /translation="AAEILGALGISHEARIVSAHRTPDRLYDYAKGAAGRGLKAIVAG
                     AGGAAHLPGMTASMTTVPVLGVPIESKALNGLDSLLSIVQMPGGVPVATFAIGKPGAV
                     NAALFAAAILANEDEALGERLAAWRKRQSEAVAAEPE"
BASE COUNT          577 a         1195 c         1098 g          540 t
ORIGIN      
        1 gcagctcgcc caatatgcgg ccgcgacgcc cgagcgcgtg cgcgcggcga tgcagaaatg
       61 gctgacgcgg ccgatgcacg cgctggtggt cgaaccgggc ccgcgcggcg cctatgaaga
      121 atcgaaatcg gtcccgcggc cggcgacgtt caagcctgca ttctatcgcc agcccgacgc
      181 gccgcacgcg acgtttgcgc ccgcggccgc agtcgatcgc tcgaagctcc ccgaagtcgg
      241 cacgattccc gatctgaaat tcccggccgt cagccgcgct cgcctctcga acgggatcga
      301 gatcgtctat gcccagcgca tggcgacccc gaccacgcgc gtcgtggtca gcttcgatgc
      361 cggcaatgcc gccgatccgg cggacaggct tgggctcgag tcgctcaccc tctcgctgct
      421 cgacgagggc acgaagacgc gcaactcgac ccagatcgcc gaagagcagg agcggctcgg
      481 cgccacgatc ggcatgagca cctcgacgga tcggaccaat gtcagcctgt tcgcactgtc
      541 gcccaacctg aagccctccg tcgctctgct ggccgatata ctccgcaacc cggttttcgc
      601 gccggccgag gtcgagcggc tgcgcaacca gcagctggtc gcgatccaga gcgagctgac
      661 ccaaccgagc gggcttgccc agcgcacgct gccgccgatc ctgttcggcc ccgcgcaccc
      721 ctatggccgc ccgacgagcg gcaatggcga tcccgcaatc gtgtcgaagc tgacgcgcgg
      781 cgatctggtc gccttccagc aggcgtggat ccggcccgac aaggcgacga tcttcgtcgt
      841 cagcgaccag ccgctcgaca aggtgcgcag cgtgctcgac gccgcgctcg gcgactggcg
      901 cgggacggga gcgcccggcg tgaaggcatt taccgccgca gtcccgcagc cccagccgcg
      961 gatcgtgctc gtcgaccggc cggattcgcc gcagtcgctc atctacggag gcgtgctgac
     1021 gccgctcaaa ggccgcgacg agctgatccc ctacctcgcc gccaatgacg tgctcggcgg
     1081 caatttcctt tcgcggctca acatggacct gcgcgagacc agaggctgga gctatggcgt
     1141 gaacggcaat tttcgccgca tgctcgaggc cgtgccctat ttcgtctcgg cgccggtcca
     1201 ggccgaccgg accggggagt cgctggtggc gatgcgcgag gacatgcaga cgtttctcac
     1261 cagccaggga ataactccgc ccgaggccga gcggacgatc aacggattcg tgcgcgaact
     1321 gccgggcagc ttcgaaaccg ccgcggatgt gctcggcggc atgcagaaca acgtgctcta
     1381 cggccggccc gacaattatt acgacacggt cgcgagccgc tatcgtgccc ttacggcaac
     1441 ggcgatggat cgggcgatcc gatcggccct cgacccgtcg aagatcacct gggtcgtggt
     1501 gggcgacgcg aagctggtca agccccagct tgacaggctc ggcctgcccg tcgaggtaaa
     1561 aatggcaccg caacaaacag cagtgggagc gaaataatgg cgaacgtcga tggcgaatat
     1621 gattgcgtga ccaaatcgcc gctgggcgag cagaagtcgg tgttcaccgt taagacggac
     1681 ggcaacgcgt tcacgggcca gaatgtcggc gcgcaaggca cgctcgacgt gatcgacggc
     1741 aaggtcgacg gcaacaagct gacctggaag atggacatga aggttccgat gccgatgacg
     1801 ctcgactgct cggcgacgat cgaaggcgac cagttcaacg gcactgtcgg cgccggcgcg
     1861 ttcggcagct tcccgatgac gggcacgcgg cgggcctgat gcgccttccc ctcccctcgc
     1921 ggtgaggggc ctaaaatacc cgcgtcacat ggcccatttt gcggccgggc cggacgtgct
     1981 tgccatatag gtgaaggtgc gcctcgggat cgcgcaggat ttcggcccag tcgttcgcgg
     2041 cttcgccgat caagttgcgc atctcgacgc gcccgccggt gcgcgccgtc gatcccagcg
     2101 ggaggccgca cacagcccgg atatgattct cgaattgcga agtgaccgcg ccttcgatcg
     2161 tccagtggcc gctattgtgc acgcgcgggg ccatttcgtt gaacaccggc ccatcggccg
     2221 tcgcgaagaa ctcgagcgtc aacagtccga catggtcgag ctcgtccgcc acgcggcgcg
     2281 caagcgcgat cgcttcgctt gcctgctcca acaccagcgc tcgcgcgggg gtggtcgaca
     2341 tgtcgagaat gccgttcgcg tgcacatttt cgggcgtttc ccatacgacc gagtccccgc
     2401 tttcggcgcg gcaaagcagc actgaaaact ccgcctcgaa gcgcacaaag ccctccagga
     2461 ccgatggcgc ttgcccgatc gcatcccaag ccgtttccac atccgccccg tcgccgatcc
     2521 gcgcctggcc cttgccgtca tagccgaggc tcgacgtctt caggatcgcc ggcgcgccga
     2581 tctcggcaaa cgcgccgcgc agttcctcca gcgtctcgac ggcccggtaa ggcgccgtct
     2641 gcccgcccag ctcccgcacc agcccctttt cggccgggcg gaagcgcgag acttccagag
     2701 agcgcttgcc gggccggatc ggcaccagcg cttcgagccg gtcgagcgct gtggggggga
     2761 cattctcgaa ctcataagtg acgacgccta cccggtccgc gaaccgcgcc agcgcgtctt
     2821 catcttcgta agcggcctgc gtccattcgg cgctgacctc ggtcgccggt ccggtcgcct
     2881 caggcgcgta gatgtgcgtg cgatagccga gctgcgcggc tgccgtcgcc agcatgcggc
     2941 caagctggcc gccgcccaat atgccgatcg tggagccggg aggcaggatc attcgggctc
     3001 ggcggcgacc gcttcgctct gccgcttgcg ccaggcggca agccgctcgc ccagcgcctc
     3061 gtcttcgttc gcaaggatcg ccgctgcgaa cagcgcggcg ttgacggcgc cgggcttgcc
     3121 gatcgcgaat gtcgcgaccg gaacgccgcc cggcatctgg acaatcgaga gcaggctatc
     3181 aaggccgttc agcgccttgg attcgatcgg cacgcccagc accggcacgg tcgtcatcga
     3241 cgcagtcatg cccggcagat gcgcagcccc gcctgcgcct gcgacgatcg ccttcagtcc
     3301 gcgcccggcc gcacccttgg cgtaatcgta aagccggtcg ggcgtgcggt gggcggacac
     3361 gatccgcgct tcgtgactga tgcctagcgc gcccagaatc tcggccgcgt
//
LOCUS       DASQVK010000270         2050 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_433020,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000270 DASQVK010000000
VERSION     DASQVK010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2050)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2050)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2050
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_433020"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..398
                     /locus_tag="VE567_05765"
     CDS             <1..398
                     /locus_tag="VE567_05765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HYZ48384.1"
                     /translation="GDGSLKTITFSKPVSDVYLALVSWNGNAGVFNQPFEVISEGCGY
                     WGCGSFANVTPVSFTGNGELHGIIRFTGSFSSVSFTDLSEHWHGIQIGIAGLAPPLVP
                     EPASWALMVGGFGLAGMALRRRSARLSVA"
     gene            complement(437..1717)
                     /locus_tag="VE567_05770"
     CDS             complement(437..1717)
                     /locus_tag="VE567_05770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0018193 - peptidyl-amino acid modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl/asparaginyl beta-hydroxylase
                     domain-containing protein"
                     /protein_id="HYZ48385.1"
                     /translation="MNEARIAQLLSAAAAEQRAQRPDVAASYLEQVVAIAPDHPQALN
                     SLGNHALASGDFAKARDRFARAAAADPNEPVLWLNLARANRELKDDAGELAALDRILA
                     IDARHFMALLRKAHLFQRKGKEAEAATLWSNASAVAPPDEELTAEIRQMLTEGRAYAF
                     QHHQRFGRIIGEAMAPHLAGLPSRDTRRIGAAIDAMLGRRRIYFNECAGMHFPFLPAD
                     EFFDREHFPWMDELEAATPVIRAELQDLLDKGDEGFSPYVQYPSGYPESKWSELDHSE
                     RWSAYFLWRHGKRIDAHCARCPATAAALAKVPLADHPGRAPTAFFSLLHPKTRIPPHT
                     GVTNTRTIIHLALIVPEKCGFRVGGETREWIEGKAFAFDDTIEHEAWNDSDQLRAVLI
                     LDVWNPHITPKERELISALHLATDASGLNPFPDE"
     gene            1835..>2050
                     /locus_tag="VE567_05775"
     CDS             1835..>2050
                     /locus_tag="VE567_05775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007015053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase family protein"
                     /protein_id="HYZ48386.1"
                     /translation="MKFFVDTADTNDIRELAETGLLDGVTTNPSLIHKAGRDFLEVVK
                     EICGLVEGPVSAEVVALDHETMMKEAEI"
BASE COUNT          350 a          602 c          700 g          398 t
ORIGIN      
        1 tcggcgacgg ctcgttgaag acgattacat tcagtaagcc cgtgagcgat gtctatctcg
       61 cgctggtgag ctggaacggt aatgccggcg tgttcaatca gccattcgaa gtcatcagcg
      121 aaggctgtgg atactggggc tgcgggtcat ttgccaacgt gacgcccgtc agctttaccg
      181 gaaatggcga gctgcatggc attatccgct tcacgggctc gttctcgtcg gtgagcttta
      241 ccgacctgag cgagcattgg catggcatcc agatcggcat cgccggccta gcgccgcctt
      301 tggttccgga acccgccagc tgggccttga tggtcggcgg ctttgggctt gccggaatgg
      361 cgctgcgccg gcgctcggcg cggctttcgg tcgcctagac gaacagagct ccccgacttt
      421 tgccaaggag gggagctcac tcgtctggaa agggattgag gccgctcgca tcggtggcga
      481 ggtggagggc gctgatcagt tcgcgctcct ttggcgtaat atgtgggttc cacacgtcga
      541 gaatcagcac ggcgcgcaac tgatcgctgt cgttccaggc ttcgtgctcg atcgtgtcgt
      601 cgaaagcgaa ggccttgcct tcgatccatt cgcgcgtctc gccgccgacg cggaagccgc
      661 acttctccgg cacgatcagg gccaaatgga tgatcgtgcg cgtgttggtg acgcccgtgt
      721 gcgggggaat gcgcgttttc gggtggagga gggagaagaa cgcggtcggc gcgcggccgg
      781 gatgatcggc aagcgggact ttcgccagcg ccgcagcggt ggcggggcag cgcgcgcaat
      841 gcgcgtcgat gcgcttgccg tggcgccaca ggaaataggc gctccaccgc tcgctatggt
      901 cgagttcgct ccatttgctt tccggatagc ccgagggata ttggacatag ggcgaaaagc
      961 cttcgtctcc cttgtcgagc aggtcctgca gctcggcgcg gatcacggga gtggccgcct
     1021 ccagctcgtc catccagggg aaatgctcgc gatcgaaaaa ttcgtccgca ggcagaaagg
     1081 ggaaatgcat tcccgcgcat tcgttgaaat agatacgccg gcggccgagc atcgcgtcga
     1141 tcgcggcccc gatccggcgc gtgtcgcgtg agggcagtcc ggccaggtgc ggcgccatcg
     1201 cttcgccgat gatccgcccg aagcgttggt gatgttggaa agcgtaagcc ctgccctcgg
     1261 tgagcatctg ccggatctcg gcagtcagtt cctcgtccgg cggcgccacc gcgctggcgt
     1321 tcgaccagag tgttgcggct tcggcttcct tgcccttgcg ctggaacaaa tgggccttgc
     1381 gcagcagcgc catgaaatgg cgggcgtcga tggcgaggat gcggtcgagt gcagcgagtt
     1441 cgccggcatc atccttcagc tcgcgattgg cgcgggcgag gttcagccac agcaccggct
     1501 cgttcgggtc ggcggcggcg gcgcgggcga aacggtcgcg tgccttggcg aagtcgccgc
     1561 tcgcgagtgc atggttaccg agcgaattca gcgcctgggg atgatcgggg gcgatcgcca
     1621 ccacttgctc gagatagctc gcggcgacat ccgggcgttg cgcccgctgc tcggcggccg
     1681 ctgccgacaa taattgcgcg atgcgcgctt cgttcacccg aaatccccca gaacccgaca
     1741 agcgggactt gatcccgcat ccgccttctc tacggggacc tttgaagtag aaagtaggcc
     1801 tcggatcaag tccggggtga tggctgaggg cattatgaag tttttcgtcg ataccgccga
     1861 caccaacgac attcgggagc tggccgagac tggcctgctc gacggcgtga ccaccaaccc
     1921 gtcgctgatt cacaaggcgg ggcgcgattt cctggaagtg gtgaaggaga tttgcggact
     1981 ggtggagggc cccgtttcag ccgaggtcgt cgcgctcgac catgagacga tgatgaagga
     2041 ggccgaaatc
//
LOCUS       DASQVK010000271         2824 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_48624, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000271 DASQVK010000000
VERSION     DASQVK010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2824)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2824)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2824
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48624"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            349..2349
                     /locus_tag="VE567_05780"
     CDS             349..2349
                     /locus_tag="VE567_05780"
                     /inference="COORDINATES: protein motif:HMM:NF012245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HYZ48387.1"
                     /translation="MAGAALQERRAENARALAVADRDLFIGLQAVRQERGPVTMALKA
                     HDAAAPEFAASLPRLRAKAQPALDALLAACSRTVCASGDAIAAIRDAMRKVAALRPEV
                     DTALRQPLADRPVEIAGAWNTTVTALIDDLEHLSQSLTDKIRMTDPVIAELMAIKEAA
                     YVVRDAAGLERNEIQAAMAAKAVTPDIRARMATLRGKVEAAWHLQHLLVSRPGVSPAV
                     LAAVHDAQDGYFRTFVTQRTAIEQALAKGIEPPLSDPELVRASNVALDLLVAIPMAAL
                     DAAVAHLDAQVHAATSRVLLQVGFLIVSLGVAALGFAVAWRRVARPIDVISSAMRRVA
                     AGDLTADVPFRDRGDEVGNLARALEVFKLNAVAKQRMEMEQQAERDATEQRARRLEEL
                     TRGFEGQIAQLLHSLASEATEMEATAQSLTKTAEHSSRQAGAVASASELTSANVQTVA
                     AATEELSTTSSEIGRQVGESAAVARKAVAEAHRTNVTVQKLAQRAQRIDEVIGLIHSI
                     AGQTNLLALNATIEAARAGEAGKGFAVVASEVKSLATQTAKATEEIAAQITDIQVATS
                     EAVEAIRGIAGTIDEISQIATTIASATEQQSTATQQIARNVQEAAHGTREVSGNIAGV
                     TQASAAVGDAAAQVLGAAGSVATQSERLKQQVDAFLAAVKAA"
     gene            complement(2496..>2824)
                     /locus_tag="VE567_05785"
     CDS             complement(2496..>2824)
                     /locus_tag="VE567_05785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48388.1"
                     /translation="AERLTAKPELAKDTRCGQAGPCDITKARLIADRAKEVSQPDTQD
                     VAAGRLVSVLDEWMPSEPGLCLYFPGRRNVPASLRAFIDVIREIEPPTDDDITLSARG
                     DGVGRE"
BASE COUNT          491 a          936 c          954 g          443 t
ORIGIN      
        1 ccggccgcgc tggcgcgggc tgtggcgccc ggcctaccgg ggtaggctct caccgagggc
       61 gcggacacca gggcggcaag ccgagcaatg gggcctcggc acgttgcacg ttgctgcgcc
      121 caaaccgcgc cttgctgcgc agagcgcgcc gccccggaat cccgctgcgg cgcctgatat
      181 taagcatttg tcaaccttca atctttatct ctggcagtgc gccgtgtccc tcggcgcgtc
      241 tccggaggcc atgccgtgcg attgatgcgc gacttgaaga tcaccacttc cctctatctc
      301 ctgttcggtc tcgcggcgct gctgttaagt ggccaggcgg tttattctgt ggccggcgcc
      361 gccttgcagg aacgccgagc cgaaaacgcc agggcgcttg ccgtggcgga ccgcgatctc
      421 ttcattggct tgcaggcggt tcgccaggag cgcggtcccg tcactatggc cctgaaagcg
      481 cacgatgcag ccgcccccga attcgccgcc agcctgcccc gcttgcgtgc caaggcacag
      541 cctgcgctcg acgcgctgct tgcggcctgc tcccggaccg tctgcgccag cggcgatgcg
      601 atcgcggcca tccgcgacgc catgcggaaa gtagccgccc tgcgcccgga ggtcgatacc
      661 gcgctgcgcc aaccgctcgc cgaccgaccg gtggagattg cgggggcgtg gaatactacc
      721 gtgacagcgc tgatcgatga tctggagcat ctctcccagt cgctgaccga caagatccgc
      781 atgacggacc cggtgatcgc cgagctgatg gcgatcaagg aagcggcgta cgtcgtgcgt
      841 gacgcggcgg gactggaacg caacgagatt caggccgcca tggccgccaa ggccgtgacg
      901 ccggatatcc gggcgcggat ggcgaccctg cgtggcaagg tcgaggccgc ttggcacctg
      961 cagcaccttc ttgtcagccg gcccggcgtg tcgccggcgg tgctggcggc ggtccatgac
     1021 gcgcaggacg ggtacttccg cacctttgtg acgcagcgca ccgcgatcga gcaggcgctg
     1081 gccaaaggca tcgagcctcc gctgagcgac cccgaactcg tccgtgcgtc gaatgtcgcg
     1141 ttggacctcc tggtggcgat cccaatggcc gcgctcgacg ccgctgtggc gcatcttgac
     1201 gcacaagtcc atgcggcaac atcgcgcgtg ctgctgcagg tcggctttct tatcgtctcg
     1261 ctcggcgttg ccgcgttggg cttcgctgtg gcgtggcggc gcgtggcgcg gccgatcgac
     1321 gtgatctctt cggcaatgcg ccgtgtggcc gccggggacc tgacagccga cgtgccgttc
     1381 cgtgaccgcg gcgacgaggt cggcaatctg gcgcgggcgc tggaggtctt caagctgaac
     1441 gccgtcgcca aacagcggat ggagatggaa cagcaagccg agcgcgacgc cacggagcag
     1501 cgcgcacgac ggctggaaga gctcacccgc ggcttcgagg ggcagatcgc gcaacttctg
     1561 cactcgctcg cctcggaagc gaccgagatg gaggcgacgg cccagtcgct gaccaagacg
     1621 gcggagcata gcagccgcca ggccggcgcg gttgcctcgg cgtccgagct gacctcggcc
     1681 aatgtgcaga cggtggcggc tgcgaccgag gagctctcga caaccagcag tgagatcggc
     1741 cgccaagtcg gtgaatcggc ggcggtcgcc cgcaaggcgg tggcagaggc gcaccggacc
     1801 aacgtgacgg tgcagaagct ggcacagcgg gcgcagcgca tcgacgaggt gatcgggctg
     1861 atccacagca tcgccgggca gaccaacctg ctggcgctga acgcaacgat cgaggcagcg
     1921 cgggccggcg aagccggcaa gggcttcgcg gtcgtcgcct cggaggtcaa atcgctcgcg
     1981 actcaaacgg ccaaggccac cgaggagatc gcagcccaga tcaccgacat ccaggtggcg
     2041 acaagcgagg cggtggaggc catccggggc atcgccggaa ccatcgacga gatcagccag
     2101 atcgccacca caatcgccag cgcgaccgaa caacaaagca ccgcaaccca gcagatcgcg
     2161 cgcaacgtgc aggaagcggc acacgggacg cgggaggttt cgggcaacat cgcgggtgta
     2221 acccaggcct cggcggcagt cggggacgcc gcagcccagg tgcttggcgc ggcgggcagc
     2281 gtggcgaccc aatccgaacg gctgaagcag caggtcgatg ccttcctggc ggcggtgaag
     2341 gcggcatagg gcattctcgg ccctcgcgca ggggcgcgga gaatggtttg aaatgtcgta
     2401 atccgccacc ccgttacgat cgctgcgcac acacctttat gtccgccatc gcgtcaagca
     2461 cttccgcttc gcacctctcc catcacgagc acggttcatt cgcggccgac gccatcacct
     2521 cgggccgata aggtgatgtc atcgtctgtg ggcggttcaa tctcccgaat gacgtcgatg
     2581 aaggcccgca gactggctgg aacattccgc cgccctggga aatagaggca taagccgggc
     2641 tctgaaggca tccactcgtc cagcacgctg accaaacgac cagcagcgac atcttgtgtg
     2701 tctggttgtg agacctcctt ggcgcgatca gcgatcaggc gggccttcgt gatgtcacaa
     2761 ggaccggcct gtccgcatcg cgtgtctttg gccagttcag gcttggctgt gagccgctcg
     2821 gcaa
//
LOCUS       DASQVK010000272         3101 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_238234,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000272 DASQVK010000000
VERSION     DASQVK010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3101
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_238234"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..182
                     /locus_tag="VE567_05790"
     CDS             <1..182
                     /locus_tag="VE567_05790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008066815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48389.1"
                     /translation="YKPPAPQPVRLPGATGETALGLAIGELVRQGKATKHDAVVAGAL
                     ARMEHTLETGKPLRN"
     gene            complement(188..508)
                     /locus_tag="VE567_05795"
     CDS             complement(188..508)
                     /locus_tag="VE567_05795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48390.1"
                     /translation="MKSFFEPTQAERRTVIAAYQRAAARGRHAPECRLAAIAALSELY
                     PDMALEVAAAEAVRIVTSDLNFLGIGRSSARAGQSRGSASGQAGAATGTREPNPPRNG
                     GANG"
     gene            995..2242
                     /locus_tag="VE567_05800"
     CDS             995..2242
                     /locus_tag="VE567_05800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010187810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045735 - nutrient reservoir activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HYZ48391.1"
                     /translation="MNPFSRRDVLALGAAGAVAAGASAAHAASFGDPDRPPQGAVNAN
                     RASARDPGPQNPTLASQFPDSQNPPATDVGDMPQFWSSFNNVHRRIQNGGWARQVTSA
                     SFPISEDIAGVNMRLEAGGIRELHWHQFAEWAIMTYGECRVTVLDPKGRAYVQDVKEG
                     DLWFFPAGYPHSLQGIGKDGCEFVIAFDDGNASEFNTLLVTEWFAHTPPEVLAQNFGV
                     PVETFQSIPLQDLYIFPGKQPGPLAAAQKAVESGGLPPNPFTFSLSGVTPFKNSRGGN
                     ARLADSTNFKVSHDIAAVLETIKPGGLREMHWHPNADEWQYWIKGEGRMTVFDTGPKA
                     QTQDFRPGDIGLVKRNMGHFIQNTGNSDIVVVALFKTSEYAEVSLSDWLTHTPPELVA
                     EHLNIDPSVLANFPNNAPGFLPA"
     gene            complement(2405..>3101)
                     /gene="mtgA"
                     /locus_tag="VE567_05805"
     CDS             complement(2405..>3101)
                     /gene="mtgA"
                     /locus_tag="VE567_05805"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: protein motif:HMM:TIGR02070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009274 - peptidoglycan-based cell wall
                     [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HYZ48392.1"
                     /translation="TIRYPGRVIRFPLRTALLVAAAFLAIVAVALVAYRWVDPPATPL
                     MLIRLAEGEGLSYRPRPLAAIAPTLARSVIASEDNRFCLHAGVDWGAVGDALDELDNG
                     RRLRGASTITMQVARNLFLWPGGGFVRKAAEVPLALAIDFLWPKRRIIEVYLEIAEWG
                     HGIYGAEAAAEAHFGKPAARLSGHEAALLAAVLPNPRRWDAARPTAYIERRAAIIEAR
                     TRQLGGLLGCLSA"
BASE COUNT          526 a         1057 c         1017 g          501 t
ORIGIN      
        1 gctacaagcc gcctgcgccg cagccggtgc gtctgcccgg cgcgaccggc gagaccgcgc
       61 tcggcctcgc catcggcgaa ctggttcgcc aggggaaggc gacgaagcac gacgccgtcg
      121 tggccggcgc cctcgcccgc atggagcaca cgctcgagac cggcaagccg ctgaggaact
      181 gaccgcccta gccgttcgct ccaccattgc gaggtgggtt cggctcacgc gtgcctgtcg
      241 cagcgccggc ctgtcccgag gcgcttccgc gcgattggcc ggcgcgcgcc gacgatcggc
      301 cgatccccag aaaattgagg tcgctggtga cgatccgtac tgcctcggcc gcggcaacct
      361 ccagcgccat atcgggatag agctcgctca gggctgcgat cgcggcaagc cggcactccg
      421 gagcgtggcg tccgcgcgct gccgctcgtt gatacgcagc gattacggtc cgccgctcgg
      481 cctgcgttgg ctcaaagaaa ctcttcatgc ctcgactgcc agacaattgg gtgttccacc
      541 atttaacggc taaggtggtg tcgatcacat gacagtcggt tacagttgta atcgaaagcc
      601 atcggtgatc tagacaaggc gcaatcttcc ctgtccgtgg cactgtctgg cttcccctct
      661 gcgaaactct cggctttgcc ggccggagac gtttcctcgt ttatcgatcc gccatggcgt
      721 ccaagcgccc gcgccgcgcg atcggtgtcc ggcacgctga accggtcggc gcaatatcgt
      781 gccaatcgcc gcatgagagc cgaagtcgac tgcgagagcg gtctctacat ctcgtcggtg
      841 agtggttggt gagacgagcc cgttttggcg caccgccgtg acgcggcatt cccgcgattg
      901 tccgggatgt cgctgaccgg gaagcagcgc tcgccggaag cggtctcgtc agcccgcccg
      961 atgcgcgatg ccaattcaga aaagggtgtt agcaatgaat ccattttctc gtcgtgacgt
     1021 gctcgcgctc ggcgcggctg gagccgttgc cgcaggtgcc tcggctgcgc acgcagcctc
     1081 gttcggcgat cccgacaggc cgccgcaggg cgcagtcaat gccaatcgcg ccagcgcccg
     1141 cgatccaggc ccgcagaacc ctaccctcgc gtcgcaattc ccggattcgc agaatccgcc
     1201 ggcaacggat gtcggcgaca tgccgcaatt ctggtcctcc ttcaacaacg tccaccggcg
     1261 catccagaac ggcggatggg cgcgccaggt gacgagcgcc tcctttccga tttccgagga
     1321 catcgcgggc gtcaacatgc gcctggaagc tggcgggatc cgggagcttc actggcatca
     1381 gttcgcggaa tgggcgatca tgacctacgg cgagtgccgc gtgacagtgc tcgatccgaa
     1441 gggccgggcc tacgtgcagg acgtgaagga gggggatctc tggttcttcc ccgccggtta
     1501 cccgcattcc ctgcaaggta tcggcaagga cgggtgcgaa ttcgtcatcg cgttcgatga
     1561 cggcaatgcg tccgaattca acacgctgct ggttacggag tggtttgccc acacgccgcc
     1621 cgaagtgctt gcgcagaact tcggcgtgcc ggtcgagacc ttccagtcga tcccgctcca
     1681 ggacctctac atattcccgg gcaagcaacc cgggccgctg gcggctgccc agaaagccgt
     1741 cgagtcgggc ggtctgccgc ccaatccgtt caccttctcg ctgtccggcg tcacgccctt
     1801 caagaacagt cggggcggca acgcgcggct cgcagacagc accaacttca aggtttcgca
     1861 cgacatcgcg gcggtgctgg agaccatcaa gcccggcggg ctccgggaga tgcactggca
     1921 cccgaatgcc gacgaatggc aatactggat caagggcgaa gggcggatga cggtgttcga
     1981 caccggcccg aaagcccaga cgcaagactt ccgcccgggc gatatcgggc tcgtcaagcg
     2041 caacatgggc cacttcatcc agaacacggg aaacagcgac atcgttgtgg tggcgctgtt
     2101 caagacctct gaatacgccg aggtgtcgct gtccgactgg ctcactcaca cgccgcccga
     2161 gctggtcgcc gagcacctga atatcgatcc gtcggttctg gcgaacttcc cgaacaacgc
     2221 cccgggtttc ctcccggcat agccgccggg cgcgaaacaa gcgtagctcg agacgccatt
     2281 ccggaagggg cgtccgggcc gagcgggcgg ccgtgccgcc gcccccggct cgcgtccgcg
     2341 ctgctttcat agggccggcc ttcgcctcgg tcgcctgcat ggaagcgggt cgctccctct
     2401 acaactatgc ggacaggcag ccgagcaggc cgccgagctg gcgggtgcgc gcctcgatga
     2461 ttgccgcgcg gcgctcgatg taggcggtcg gccgcgccgc gtcccagcgc cgcgggttgg
     2521 gaaggacggc ggcgagcagc gccgcctcgt gcccgctcag ccgtgccgcc ggcttgccga
     2581 aatgcgcctc cgccgctgcc tccgcgccat agatcccgtg tccccattcg gcgatctcca
     2641 ggtagacctc gatgatgcgc cgcttcggcc agaggaagtc gatggcgagg gcaagcggca
     2701 cctccgccgc cttgcggacg aacccgccgc ccggccagag gaagaggttg cgcgcgacct
     2761 gcatcgtgat cgtcgaggcg ccgcgcaacc ggcggccatt gtcgagctcg tcgagcgcgt
     2821 cgccgaccgc gccccagtcg acgccggcat ggaggcagaa ccggttgtcc tcgctcgcaa
     2881 tcaccgagcg ggcaagggtc ggcgcgatgg cggcgagcgg ccgcggccgg tagctcagcc
     2941 cctcgccctc cgcaaggcgg atcagcataa gcggcgtcgc cggcgggtcg acccagcgat
     3001 aggcgacgag cgcgactgcg acgatggcaa ggaaggccgc cgcgacaagc aacgcggtgc
     3061 ggaggggaaa gcggatcacg cgcccaggat agcggattgt c
//
LOCUS       DASQVK010000273         2043 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_207187,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000273 DASQVK010000000
VERSION     DASQVK010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207187"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            71..754
                     /locus_tag="VE567_05810"
     CDS             71..754
                     /locus_tag="VE567_05810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004207867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L deacetylase family protein"
                     /protein_id="HYZ48393.1"
                     /translation="MNVTERIGRALVIAPHPDDEVLGCGGTIARLAASGREVHVGIAT
                     EGRPPLYTAESVMRVRAEADAAHRLLGVVKTHFLTLPAAGLDTIPQTDINQALQQLIA
                     DVGPDTLFVPFAGDIHVDHQLIFAAAMVAVRPLGKDYPRRVFAFETLSETNWGAPGVK
                     PRFDPSLFIDIDETLDRKLAAFCLYASQVKPFPHERSVEAISALARLRGATVHLSAAE
                     AFVMVREVG"
     gene            754..1788
                     /locus_tag="VE567_05815"
     CDS             754..1788
                     /locus_tag="VE567_05815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HYZ48394.1"
                     /translation="MESFRLEKRAHDMTGESAASNAAEVRLLLTSAGRRVELMRCFQH
                     EASVLGITLGTLACDLDPRLSPACRLADTMFAVPSAASSSYVDELLDLAAAKRVTMIV
                     PTIDPELLPLSLGRERFAAIGTDVVISGPELVGIARDKLATAEFLAAYDIPSPRTARL
                     EDVCAAPDDWQWPVMVKPRHGSASRGIRIITSPAGLPHDPEEPLIVQELLQGREFTVN
                     MFFDRKGQFRAAVPHERLRVRAGEVEKGITRRDAAIERVAAQLAEVLPRPRGALCFQA
                     FVTGSGDVRVFEINARFGGGYPLAHEAGATFVKWLLQEQAGLPCTAGNDGWRGNLTML
                     RYDAAVFVTS"
     gene            complement(1758..>2043)
                     /locus_tag="VE567_05820"
     CDS             complement(1758..>2043)
                     /locus_tag="VE567_05820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48395.1"
                     /translation="APPGAARARGRLQLKVVENVIENVSPLASLEMVERVSQEVTDTE
                     FLLDPATDGLHAAAHEISLEIKSVIEIEHDDARHVRGGAGGHDVTNTAAS"
BASE COUNT          331 a          681 c          653 g          378 t
ORIGIN      
        1 ttcgcatcac cgactatgaa gggtcgggcg aaaagccgct tcgcctccat ggccggctgg
       61 gacgtccatc atgaacgtga ccgagcgaat cggacgcgcg ctggtgatcg cgccgcatcc
      121 cgatgacgaa gtgctcggct gcggcggcac gatcgctcgg ctggcagcca gcggacgcga
      181 ggttcatgtc gggatcgcga ctgaagggcg cccgcccctc tatactgccg aatcggtgat
      241 gcgcgtgcgc gctgaagcgg acgcggcaca tcggctgctt ggcgtcgtca agacgcactt
      301 cctgaccttg cccgcggccg gtctcgacac gattccgcag accgacatca atcaggcgct
      361 gcagcaactc atcgccgacg taggccccga cacacttttc gtcccctttg ctggcgacat
      421 ccacgtcgac caccagctga tcttcgcggc ggcaatggtg gccgtgcggc ccctagggaa
      481 agattacccg cgccgggtct tcgcctttga aacgctgtcc gaaaccaatt ggggcgcacc
      541 aggcgtaaag ccgcgcttcg atcccagtct tttcatcgat atcgacgaga cgctcgatcg
      601 caagctggcg gccttttgtc tctacgcttc tcaggtgaag ccgtttccgc acgaacgctc
      661 ggtcgaggcg atctctgctc tggcgaggct gcgcggcgct accgtccatc tctccgccgc
      721 ggaagccttt gtcatggtac gggaggtggg ctgatggaaa gcttccggct tgagaaacgt
      781 gcgcacgata tgacgggcga gtccgctgcc tcgaacgccg cggaagtccg gcttctcctg
      841 acctcggccg ggcgccgcgt cgagctcatg cgctgcttcc agcacgaagc ctccgtgctg
      901 ggcatcacgc ttggtacgct cgcctgcgac ctggacccgc gactcagtcc ggcctgccgc
      961 cttgcggaca ccatgttcgc ggtgccgtcc gcagccagct cctcttacgt ggacgagttg
     1021 ctcgacctgg ccgccgcgaa gcgggtgacg atgatcgtgc ctaccatcga tccggagctt
     1081 ctgccgctca gtcttgggcg ggaacggttt gccgcgatcg gcactgacgt ggtgatcagc
     1141 gggcctgagc tggtcggaat cgcccgcgac aagcttgcaa ccgccgaatt cctggcggcc
     1201 tacgatatcc cctccccgcg cactgcaagg ctggaggatg tgtgcgctgc cccggatgac
     1261 tggcaatggc cggtgatggt gaagccgcgc cacggcagcg cgagccgggg aatccggatc
     1321 ataacgtcgc ccgccggcct gccgcacgat ccggaggagc cgctgatcgt gcaggagctg
     1381 ctgcagggcc gcgaattcac ggtgaacatg ttcttcgatc gaaagggcca gttccgcgct
     1441 gccgtcccgc acgagcggct gcgcgtacgc gctggggaag tcgaaaaggg catcacccgg
     1501 cgcgacgccg cgatcgaacg cgtcgccgca caactggccg aggtcttgcc ccgcccgcga
     1561 ggcgcccttt gcttccaggc atttgtgacc ggcagcggcg atgtccgggt ctttgagatc
     1621 aatgcacggt tcggcggcgg ctatccgctc gcccacgagg ccggcgctac attcgtgaaa
     1681 tggctgttgc aggagcaggc cggtcttccg tgtaccgccg gcaatgatgg ctggcgcggg
     1741 aacctgacca tgctccgcta cgacgccgcg gtgttcgtca catcatgacc gcccgccccg
     1801 cctcgcacgt gtcgagcgtc gtcgtgctcg atctcgatga cactctttat ctcgagcgag
     1861 atttcgtgcg cagccgcatg caggccgtcg gtcgctggat cgagcaggaa ttcggtgtcg
     1921 gtgacttcct gcgacacgcg ctcgaccatt tcgagcgagg cgagcggcga cacattttcg
     1981 atcacgttct ccacgacctt cagctggagg cgacctcgcg cacgggctgc acccggcggt
     2041 gct
//
LOCUS       DASQVK010000274         3210 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_396914,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000274 DASQVK010000000
VERSION     DASQVK010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3210)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3210)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3210
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_396914"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..286
                     /locus_tag="VE567_05825"
     CDS             <1..286
                     /locus_tag="VE567_05825"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HYZ48396.1"
                     /translation="NPERYQRLRNTDKLEGLAGDLMIISAADDVNTPLEQTMAYAEAL
                     VGAGVPFAQLIVPNCNHVFVESSGRSRMTYVHRQIAKYFLRTLGAPKPLL"
     gene            complement(316..1329)
                     /locus_tag="VE567_05830"
     CDS             complement(316..1329)
                     /locus_tag="VE567_05830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HYZ48397.1"
                     /translation="MADNSNSKTTLEDLARLAGVSVSTVSRALNDQPLISTRTKQKIW
                     ALARDQNYHFRPSMPSAPIGAEGAIVIVTPHMRGRPLPLSHPFFLELLANIGEAARAR
                     SCDLTVSHVAPASLEDLVVTTSTSRASGVIFLGQSMLHKEFNQLAETNARFVVWGAHI
                     PGQRYRSIGSDNLLGGRRATLHLVRLGRKAILFLGGSDPEALQRRQGYLEALKEAGLE
                     LDPKLVTPVEFELESAEAAVGRLMRRGTKFDAIVATSDLIALGAIRALRRAGLSVPED
                     VSVVGYDDMLLSRLSTPALTTIRQDTVLAGRLLVSSILDFGQDFSPDYLPTELIVRES
                     CGG"
     gene            1463..2914
                     /locus_tag="VE567_05835"
     CDS             1463..2914
                     /locus_tag="VE567_05835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYZ48398.1"
                     /translation="MCCGLFGVQIVWGLQNVNTSRIFQTLGANLAELPILWIAAPITG
                     LLVQPIVGHFSDRTWGALGRRRPYLLGGALVSAGALVLMPNVSTLWAATIALWLLTAA
                     INVAMEPFRALVADIVPQEHRTAAFATQVAFIGAGAVFASALPWLVSHAGGFPEGSEA
                     RAVPDSLRVAFYIGALGLLATVGITVATTAEPPPGRFACGQERSVHQPGRTSVALLLR
                     GGGAWLAGAVAIAVATRLGGYRAELYLIAGVAALLGLGQLVAAWNAHRGLVATGLLEI
                     VQDVLHMPRVLRRLALVQFFTWFGLFTLWIYAVPAIAARCGAGTDPTSAAYHAMADWV
                     GLLFAFYNGVAALGAFLLPRLAGCIGRCQSHAACLALGAAGLLGLSLITERQWLWIPA
                     LCIGCAWASILSAPYAMVSSAVPATRMGVYLGIHNVFLVLPQLVAAALLGWIVEHLLG
                     GQAWLALVLAAGALLLAAGAALTIPDEAGRRRA"
BASE COUNT          504 a         1004 c         1075 g          627 t
ORIGIN      
        1 caatcctgag cggtatcagc gcctgaggaa taccgacaag cttgagggcc tggcaggcga
       61 cttgatgatc atcagcgccg ccgacgacgt caatacgccg cttgagcaaa ccatggcata
      121 tgcggaggct ttggtaggag ccggcgtgcc gttcgcccag ctgatcgttc cgaactgcaa
      181 ccatgtgttt gtggaatcaa gcggccgctc gcgcatgacc tatgtgcatc ggcaaatagc
      241 gaagtatttc ctgcgaacgc tgggcgctcc taagcccttg ttgtaaccgg cgcattctct
      301 tcttcggacg taagcctagc cgccgcagga ttcgcggacg attagctcgg ttggcagata
      361 gtcgggcgag aaatcctggc cgaaatcgag gatgctcgag acgagcagtc ggccggcgag
      421 caccgtatcc tgtcggatgg tcgtcagcgc cggcgtgctg aggcggctca gcagcatgtc
      481 gtcatagccc accaccgaca cgtcttccgg gaccgacagg cccgcccggc gcagtgcacg
      541 gatggcgccg agcgcaatca gatcgctggt ggcgacgatc gcatcgaatt ttgtgccgcg
      601 ccgcatcagc cggccgactg cggcttcggc cgattcaagc tcgaactcga ctggcgtcac
      661 cagcttggga tccagctcta gcccggcctc cttcagcgct tcgagatagc cttggcggcg
      721 ctgcagagct tcgggatcgc tgccgccaag gaagaggatt gcctttcgcc cgagccgcac
      781 caggtggagc gtcgcccgcc ggccgccgag cagattgtcg gacccgatcg agcgatatct
      841 ctgcccggga atatgcgcac cccagaccac gaagcgcgca ttcgtctcgg ccagctggtt
      901 gaactccttg tgcagcatcg actggccgag gaagatcacg ccgcttgcac ggctcgtgga
      961 ggtggtcacc accagatcct caaggctggc cggcgccaca tggctcaccg tcaagtcgca
     1021 gctgcgcgcg cgcgcggctt cgccgatatt ggccagcaat tcgaggaaga aggggtggga
     1081 aagcggcagc ggccgccccc gcatatgcgg ggtcacgatc acgatcgctc cctcggcgcc
     1141 gatcggcgct gagggcatgg aggggcggaa atgataattc tggtcgcgcg cgagcgccca
     1201 gatcttctgc tttgtcctcg tgctgatcag cggttgatcg ttcaatgcac gcgaaacggt
     1261 cgagaccgac acgccggcaa gccgggccag atcctcaagg gtcgttttgc tgttgctgtt
     1321 atcggccatc ggagacaagc tgcgggaaag tagaatgtcg acgtagcgca tcgaaggggg
     1381 aactttgcaa gcgggggcgg ggcaagcaga gggacatcgc cctgctgagg cgtctcggcc
     1441 ctcgcgcctg gcgcttgcca aaatgtgctg cggacttttc ggcgtgcaga tcgtctgggg
     1501 cctccagaac gtcaatacga gccgcatttt tcagacgctc ggcgcgaatc tcgccgagct
     1561 gccgatcctg tggatcgccg ctccgatcac gggtcttctc gtgcagccga tcgtcggcca
     1621 tttcagcgat cgaacctggg gcgcgctggg ccggcgccgg ccctatctgc tcgggggcgc
     1681 cttggtgagc gctggggcat tggtgctgat gccgaacgtt tccacgctct gggccgcgac
     1741 catcgcgctc tggctcctca ccgcggcgat caacgtggca atggagccgt ttcgcgccct
     1801 tgtcgcggac atcgtgccgc aggagcatcg caccgccgcc ttcgcgaccc aggtcgcctt
     1861 catcggcgct ggcgccgtat tcgcctcggc attgccgtgg ctggtgtcgc acgcgggcgg
     1921 ttttccggag ggaagcgagg cgagggcggt gccggattcc ctgcgggtcg ccttctatat
     1981 cggcgcgctc ggcttgctcg ccacagtcgg gataacggtc gcgacgactg ccgagccccc
     2041 gccggggcgg ttcgcctgcg ggcaggaacg cagcgtccat cagcctgggc ggacgagcgt
     2101 cgcgttgctt ttgcgcgggg gcggggcatg gctggccggc gcggtggcga tcgcggtggc
     2161 gacccggctt ggcggctatc gggccgagct ctatctcatc gccggcgtag cggctttgct
     2221 gggcctgggg cagcttgtcg cggcctggaa cgctcaccgg ggtctggtcg cgaccgggct
     2281 ccttgagatc gtgcaggacg tgttgcacat gccgcgcgtt ctgcggcgtc ttgcgctggt
     2341 ccagttcttc acctggttcg gtctcttcac gctgtggatc tatgccgtgc ccgcaattgc
     2401 ggcgcggtgc ggcgcgggca cggatccgac gagcgccgcg taccatgcca tggcagactg
     2461 ggtggggctg ctgttcgcct tctataatgg cgtggcggcg ctcggcgcct ttctgctgcc
     2521 gcggctcgct ggctgcatcg gccgctgtca gtcccatgcg gcgtgcctgg cgctcggggc
     2581 ggcgggtctg ctcggcctct ctctcatcac agagcggcaa tggctttgga tccccgccct
     2641 gtgcattggc tgcgcctggg cctcgatact gtccgcgcct tacgcgatgg tgtcgagcgc
     2701 ggtgccggcc acgcggatgg gcgtctatct gggcattcac aatgttttcc tggtgctgcc
     2761 gcagctggtc gcggcggccc tgctcggctg gatcgtcgag catctgcttg gcggccaggc
     2821 gtggcttgcg ctggtccttg cggccggcgc tcttttgctg gcggccggcg cagcgctcac
     2881 aattcccgac gaggctgggc gacggcgcgc ctgatcccgt gcgccgttgc ggtgcggtgc
     2941 gacggatcat acccctcctc tcgctgatag gggtaatgca aatttttgca taaatctagc
     3001 tgctctttgc aacccgcaat cgcaaacttg cccgctgcgc caagcccaag agatgagaaa
     3061 ctctcctcaa aattcacttg cacttaccgc aaatttacgc aaatttgcgc aagacgatga
     3121 gagcggccga gtcgcatcat cgagtcatgg gccttgcaaa gaaggcgcaa agggaggatc
     3181 ttgggcatga ggggcagcgg aatcatgtgt
//
LOCUS       DASQVK010000275         3662 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_143766,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000275 DASQVK010000000
VERSION     DASQVK010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3662
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143766"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..220
                     /locus_tag="VE567_05840"
     CDS             <1..220
                     /locus_tag="VE567_05840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011950904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase"
                     /protein_id="HYZ48399.1"
                     /translation="QLDLAGIAVSAGSACSSGTLKTSHVLAAMGWSEKEAGEVIRASF
                     GPETSRADIYRFVEAWKRIAGDARARAA"
     gene            220..1335
                     /locus_tag="VE567_05845"
     CDS             220..1335
                     /locus_tag="VE567_05845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase family protein"
                     /protein_id="HYZ48400.1"
                     /translation="MRTIYLDYQATTPLAPEAHAAMEPWLGKKFANPHSPHRLGREAK
                     AAVEFAREQVSSCLGFQSGRLIFTSGATEAANLGLKGAAWVASPERRRIVTLATEHAC
                     VLDSVLWLGQHGFEAVVLPVGRDGLVDLDRVAAAVDDRTALVAAMLVNNEIGVIQAVE
                     AIGRIAREAGALFFCDAVQGLSRVPMAEADLVAMSAHKIHGPKGVGALWVRDGVALEP
                     LMHGGAQESGLRSGTLSPALCAGFGAAAALAEQRQEQDRAHVERLWQLATARLAGWMI
                     NGSVEHRYRGNLNLRADGLDAARLIADVRGVGFSAGSACASGSGRPSHVLKALGLTDS
                     EARSSVRLGFGRYTSETELAEAIDLILEAAERQRAFA"
     gene            1332..1667
                     /locus_tag="VE567_05850"
     CDS             1332..1667
                     /locus_tag="VE567_05850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011950906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HYZ48401.1"
                     /translation="MTRVRFISADGASVSNVEGAPGERLLDLAQADGQPLEGTCEGQM
                     ACSTCHVLVDPLDFARLPPASEPEEDMLDLAAGATRYSRLACQIYLTGDLDELTVRIP
                     PEARNMQGR"
     gene            complement(1736..>3662)
                     /locus_tag="VE567_05855"
     CDS             complement(1736..>3662)
                     /locus_tag="VE567_05855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYZ48402.1"
                     /translation="GALFPGGVNPYAQAAAALISGNQVCQSAPDPTGNVFTGSKLCAT
                     QSLDVDRSNLYNRQYSVEAHIDSHFTGMFNFLLGGLYLDGKTGDSSYYVNSFGLDYAS
                     ALLGAANALGARAAGATVPNLYAGTPYYRNHTDDFRLKSYGIFGETYFQFSDRLKLTL
                     GLRYNHDEKTVAARTTFASDTQSCQLRNSTRAAPSSNSANNCHFANETAPLLLDAEGK
                     SITVSASNTVLNPFGTFSVDQAINAPILDFDPATAGPQRIAAARVSFGRLTGRAVLDF
                     KLTPDNLIYFSYSRGYKSGGINPPLSPAFTVPSTFQPEKVNAFEIGSKNTFANGNVRL
                     NLTAFYYEYSNLQLSRIVARTSVNDNIDAHILGVEAEALLRPSRNWLFNLSASFLRSK
                     VSGDRFLANPQDPSGGRSDTVIIKDITNASNCAVRPVRGAVGTAAAAGFVDFVNTQVL
                     GPAGVKPTQQIYADGTRGAFSSCSILAAVAAGNGAAYSPGLAALQPFANGLFNGGQPG
                     ALPFVVDSGGAPVNIRGNQLPQAPNFKFSAGLQYTAEIGDWTLVPRADLTYTGDYYGS
                     IFNQNINRIQGFAVVNAQVQLNGPDDRWFVRAFVQNLTKNNAITGEYVTDQSSGNFTN
                     VFTLEPRRYGIAAGFRF"
BASE COUNT          618 a         1151 c         1260 g          633 t
ORIGIN      
        1 tcagctcgat ctcgccggca tcgcggtgtc ggcgggtagc gcctgctcgt cgggcacgct
       61 caagaccagc catgtgctcg ccgcgatggg ctggagcgag aaggaagcgg gcgaagtgat
      121 ccgcgcgagc ttcgggccgg agaccagccg cgccgacatt taccgcttcg tcgaggcctg
      181 gaagcggatc gcgggagacg cgcgcgcgcg ggctgcctga tgcgcaccat ctatctcgat
      241 tatcaggcga cgaccccgct cgcccccgaa gcgcacgcgg ccatggagcc gtggctcggc
      301 aagaaattcg ccaatcccca ttcgcctcac cgactgggcc gcgaggccaa ggcagcggtg
      361 gagtttgcga gagagcaagt gtcttcctgt ctcggatttc agagcggccg gctgatcttc
      421 acttccggcg ccaccgaagc cgccaatctg ggcctgaagg gcgccgcttg ggttgcctcg
      481 cccgaacggc gccgcatcgt gacgcttgcg accgaacatg cctgcgtgct cgactccgtg
      541 ctctggctcg gccagcacgg cttcgaggcg gtcgtgctgc cggtcggacg cgatggcctg
      601 gtcgatctcg accgcgtcgc cgcagcggtg gacgaccgca ccgccctcgt cgccgcgatg
      661 ctcgtcaaca acgagatcgg ggtcatccag gcggtggaag cgatcggccg gattgcgcgc
      721 gaagccggcg cgttgttctt ctgcgacgcc gtgcaggggc tgagccgggt gcctatggcc
      781 gaggccgatc tggtcgccat gtccgcccac aagatccacg gacctaaagg cgtcggtgcg
      841 ttatgggttc gcgacggggt tgcccttgaa ccgctgatgc atggcggcgc gcaggaatca
      901 ggcctccgct ccggtacgct cagccctgcg ctttgcgcgg gcttcggtgc ggcggcggcg
      961 ctggccgagc agcggcagga gcaggatcgt gcccatgtcg agcggctctg gcagctcgcg
     1021 accgcgcggc ttgccggctg gatgatcaat ggtagcgtcg aacaccgtta tcgcggcaat
     1081 ctcaacctgc gcgccgacgg cctcgatgct gcgcgcctga tcgccgacgt acgcggcgtc
     1141 ggtttctccg ccggctcggc ctgcgcgagc ggctcggggc ggcccagcca cgtgctgaag
     1201 gcgctcggcc tcacggacag cgaggcgcgg tcgagcgtcc gcctcggttt cggccgctac
     1261 acgagcgaaa ccgagttggc cgaggcgatc gatctgatcc tggaagccgc cgagcggcag
     1321 cgcgcgttcg catgacgcgc gtgcgcttca tctcggctga cggcgccagc gtcagcaacg
     1381 tcgaaggcgc gcccggcgag cggctgcttg acctcgccca ggccgacggc cagccgctcg
     1441 agggcacgtg cgaggggcag atggcctgtt cgacctgcca cgtcctcgtc gatcctctgg
     1501 atttcgcccg gctgccaccc gccagcgagc ccgaggaaga catgctcgac ctcgccgccg
     1561 gcgcgacccg ctacagccgg ctcgcgtgtc agatctacct gaccggcgat ctcgacgagc
     1621 tcacggtccg cattccgccc gaagcccgga acatgcaggg ccgctaggcc atcgtccaca
     1681 aaaagagccc gcgcggagtc tcgtcgcgcg ggcccaggga cggaacggtc gttgcttaga
     1741 agcggaagcc ggcggcgatg ccgtaacggc gcggctccag cgtgaacacg ttggtgaagt
     1801 tgccggacga ctggtccgtc acatattccc ctgtgatcgc attgttcttg gtcaggttct
     1861 gcacgaacgc gcggacgaac cagcggtcgt ccggtccatt gagctggacc tgtgcgttca
     1921 cgacggcgaa gccctggatg cggttgatgt tctggttgaa gatgctgccg taataatcgc
     1981 ccgtgtaggt caggtcggca cgggggacga gagtccagtc gccaatctcg gccgtgtatt
     2041 gaaggccggc tgagaatttg aagttcggcg cctgcggcag ctgattgccg cggatattca
     2101 ccggcgcgcc gccggaatcg acgacgaaag gcagcgcgcc tggctggccg ccgttgaaca
     2161 ggccgttggc gaacggctgc agcgcggcaa ggcctgggct gtacgcggca ccattccccg
     2221 ccgccacggc cgcgagaatg ctgcacgagg aaaaagcccc gcgcgtcccg tccgcataga
     2281 tttgctgtgt cggcttgacg cctgcaggcc caagcacctg cgtgttcacg aagtcgacga
     2341 acccggcggc cgccgccgtg cccacggcac cgcggaccgg ccggaccgcg cagttggacg
     2401 cgttggtgat gtccttgatg ataaccgtgt cgctccgccc gcccgaagga tcctgcggat
     2461 tggccaggaa gcgatcgccc gacaccttcg aacgcaggaa gctggcgctc aggttgaaga
     2521 gccagttgcg cgagggccgc agcagcgcct cggcttccac gcccaggatg tgcgcgtcaa
     2581 tattgtcgtt gactgaggtg cgcgcgacga tgcggctgag ttgcaggttc gagtattcat
     2641 aataaaaggc ggtcaggttc agccgcacat tgccgttcgc aaacgtgttc ttcgaaccga
     2701 tctcgaaggc gttgaccttc tccggctgga aggtggatgg caccgtgaac gccggcgaaa
     2761 gcggcgggtt gatgccgccc gacttatagc cgcgcgaata ggagaaatag atcaggttgt
     2821 ccggcgtgag cttgaaatcc agcaccgcgc ggccggttag ccgcccgaac gaaacccgcg
     2881 cggctgcaat ccgctgcgga cccgcggtgg ctgggtcgaa atccagaata ggcgcgttga
     2941 tcgcctgatc gacactgaag gtgccgaacg gattgagcac cgtgttggac gccgatacgg
     3001 tgatcgactt gccctcggca tccagcagca gcggcgctgt ctcgttcgcg aaatggcagt
     3061 tgttcgcgct attggagctg ggtgccgccc gggtcgagtt cctgagctgg cagctctgag
     3121 tgtcggaggc aaacgtggtg cgcgccgcga cggtcttttc gtcgtgattg tagcgcaggc
     3181 ccaaggtgag tttcagccga tcgctgaact ggaaataggt ctcgccgaaa atgccatagg
     3241 atttcaggcg gaaatcgtcg gtatggttcc ggtaataggg cgtgcctgca taaaggttcg
     3301 gcacggtcgc gccggccgct cgcgcgccga gcgcattggc ggcgccgagc agggcagagg
     3361 catagtcgag cccgaacgag ttgacgtaat agctgctgtc gccggttttg ccgtccagat
     3421 aaaggccgcc cagcaggaaa ttgaacatgc cggtgaaatg gctgtcgata tgggcttcga
     3481 ccgaatattg gcggttgtac aggttcgacc ggtcgacatc gaggctttgc gtcgcgcaga
     3541 gcttgctacc tgtgaagacg ttgccggtcg ggtcgggcgc cgactggcag acctgattcc
     3601 cggaaatcag cgcggctgca gcctgggcgt agggattgac gccgccgggg aagagcgcgc
     3661 cg
//
LOCUS       DASQVK010000276         6671 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_207448,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000276 DASQVK010000000
VERSION     DASQVK010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6671
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207448"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..182
                     /locus_tag="VE567_05860"
     CDS             <1..182
                     /locus_tag="VE567_05860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007689398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HYZ48403.1"
                     /translation="YRGEVKVILANLGAEPFEIRRGERIAQLVPAPVQRARFEEVAEL
                     DETARGAGGFGSTGL"
     gene            179..943
                     /locus_tag="VE567_05865"
     CDS             179..943
                     /locus_tag="VE567_05865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012051051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HesA/MoeB/ThiF family protein"
                     /protein_id="HYZ48404.1"
                     /translation="MSLTDEQLDRYARHIVLKEIGGAGQVKLRQARVAVIGAGGIGCP
                     AIQYLAAAGIGTLRVIDDDVVSLANLQRQILFGTKDVGSPKVEVAREAVARLNPDVGF
                     EPVPERLTRDNAAELIGAVDLVLDGCDNFATRLAVSDATVRARIPLVSAALGQFQGQI
                     GTFRGWEPDQPCYRCFVGDAFDADDCDTCSEQGVLGAMAGLIGAWAAMEAVRAILGFG
                     PDPAGKIHVFDGVTSALRTIRIPKDPGCKTCGAIPA"
     gene            complement(968..1366)
                     /locus_tag="VE567_05870"
     CDS             complement(968..1366)
                     /locus_tag="VE567_05870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011542606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48405.1"
                     /translation="MKRLSRMVAAAGLALTALATAAGAARLSPEAQLEKLVAGRAAGK
                     PVDCINLRDVQNQTIIDKTAIVFRIGSKLYVNRPSGGANQLDNDDILITKTFGSQLCR
                     IDTVRLLDRASRIPHGFVSLGDFVPYTKPR"
     gene            1462..1944
                     /locus_tag="VE567_05875"
     CDS             1462..1944
                     /locus_tag="VE567_05875"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYZ48406.1"
                     /translation="MLIRPAGPKDAAAIWSIIEPVIRAGDVYALDRDLSKDEGLAYWF
                     EADKETFVAEESGIVLGTYYLRPNQAGGGRHVCNCGYATAAHATGRGIARQMCLHSLE
                     HARARGYRAMQFNFVVSTNERAVKLWHSLGFETVGRLPLAFNHPTNGYVDALVMFRPL
                     "
     gene            complement(1959..2357)
                     /locus_tag="VE567_05880"
     CDS             complement(1959..2357)
                     /locus_tag="VE567_05880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HYZ48407.1"
                     /translation="MSKGALQEEKSPSELIDGKIRELGDWRGEMLSRLRALVKQADPD
                     IVEEWKWRGVPTWYHDGIICTGETYKQVVKMTFAKGAALEDPAGLFNSSLDGNARRAI
                     DFHEGEEIDEEALKALVRAAVALNISDTRG"
     gene            complement(2357..2554)
                     /locus_tag="VE567_05885"
     CDS             complement(2357..2554)
                     /locus_tag="VE567_05885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48408.1"
                     /translation="MRQTHRWLSIVFTLAVVANFVAMGLGTPPAWITYSPLPPLFLQL
                     ATGLYLFVLPYARKPNAKERA"
     gene            complement(2604..3035)
                     /locus_tag="VE567_05890"
     CDS             complement(2604..3035)
                     /locus_tag="VE567_05890"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HYZ48409.1"
                     /translation="MTDTATETRSVTVERELPHPPEKIWRALTQPHLIEEWLMKNDFE
                     PVVGHRFNLRGDWGGVLDCEVLAVEPNSKLSYTWDLAHEDPAFNLKSVVVFTLTPTPA
                     GTHLRMEQSGFRPDQKQAFGGAKLGWPQFLAKLEQVLAAAD"
     gene            complement(3032..3355)
                     /locus_tag="VE567_05895"
     CDS             complement(3032..3355)
                     /locus_tag="VE567_05895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007708469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HYZ48410.1"
                     /translation="MANLHVTLFKTLADPTRRAIFERLCREGEQTVGALTVRAGVSQP
                     AVSKHLGVLKQAGLVRDRHEGRQTHYSAQPGALAPLVDWTRQMAEFWEARFDHLEDLL
                     RRMDQ"
     gene            complement(3412..3726)
                     /locus_tag="VE567_05900"
     CDS             complement(3412..3726)
                     /locus_tag="VE567_05900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF167 domain-containing protein"
                     /protein_id="HYZ48411.1"
                     /translation="MTGAPPWTETDGGLILAVRVTPRASRTEIAGIAPLPDGRQALAI
                     RLAAPPVEGAANSELIAFLVKALGLRKSAMTLVSGETSRLKLLRVEGDRAATIERLTA
                     GL"
     gene            complement(3723..6236)
                     /gene="topA"
                     /locus_tag="VE567_05905"
     CDS             complement(3723..6236)
                     /gene="topA"
                     /locus_tag="VE567_05905"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004207248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HYZ48412.1"
                     /translation="MQLVIVESPAKAKTIEKYLGRDYRVLASYGHIRDLPPKDGSVDP
                     DNGFAMEWETYGDKAKQLKAIADEAKKADRLILATDPDREGEAISWHVQEVLRKRKAL
                     PKEVERVTFNAITKPAVTEAMANPRQLDEDLIDAYRARRALDYLVGFTLSPVLWRKLP
                     GAKSAGRVQSVALRLIVDREREIEVFTPQEYWSVFADMEQDGTPFQARLVRWKGEKID
                     RLTIGKRGDAEAAKAAVEAGRFTVASVETKPLTRNPPPPFTTSTLQQEAARKLGFSAS
                     HTMRIAQNLYEDGAITYMRTDGVQMDGSAISAARAAIADRYDGSYVPDKPRQYQTKAK
                     NAQEAHEAIRPTDFGRAQLGSGDHAKLYELIWKRALASQMASARMERTTVELEDGTGQ
                     TTLRATGQVVLFPGYLALYEEGRDDADDEESRRLPRLSQGDAPLKKAVHAEQHFTQPP
                     PRYSEASLVKKLEELGIGRPSTYASILQVLKDREYVRVEKNRFIPEETGRLLTAFLER
                     FFEKYVSYDFTAGLEEELDDISGGRAAWQQVLEDFWRDFKPKTAQVMEQKPSDITAAL
                     DQFLEPYLFPPRGDGSDPRLCPNCGEGRLSLRGGRFGAFVACSNYPECKYTRRFAQGG
                     GEDGANDNGDLALGRDPETGAEVFRKTGRFGPYVQLGDGKDAKRASIPKDIGEIDLEW
                     ALKLLSLPRTVGTHPETGEQITASIGRYGPYLAHQGKYARLGSTAEVFEVGMNAAVAK
                     LADAAKGGGRPQRGGSREPLRVLGVHPRTAAEIKLMEGRFGPYVTDGTTNATLPKTVA
                     PEALTVEEAAQLLDARAAAGPVAKKGRGGAKKAAAKKRA"
BASE COUNT         1116 a         2188 c         2126 g         1241 t
ORIGIN      
        1 actatcgcgg cgaggtgaaa gtgatcctcg ccaatctggg cgccgagccg ttcgagatcc
       61 gccgcggcga gcgcatcgcg caactcgttc ccgctcccgt ccagcgcgcc cgtttcgagg
      121 aagtggccga actcgacgaa accgcgcgcg gcgccggcgg tttcggttcg accggtctgt
      181 gagcctcacg gacgaacagc tcgaccgtta cgcgcgccat atcgtcctca aggagatcgg
      241 tggcgcgggg caggtaaagt tgcgccaggc gcgcgtcgcg gtgatcggcg cgggcggcat
      301 tggctgcccg gcgatccagt atcttgccgc ggccgggatc ggcaccctcc gcgtgatcga
      361 cgatgatgtg gtgagtctcg cgaacctgca gcgccagatc ctgttcggaa ccaaggacgt
      421 tggcagcccc aaagtcgagg tcgcgcgcga agcggtggcg cggctcaatc ctgacgtggg
      481 cttcgagccc gtgcccgagc gcctgacccg cgacaatgcg gcggagttga tcggcgcggt
      541 cgatctggtg ctcgacggct gcgacaattt cgccacgcgc ctcgccgtct ccgatgcgac
      601 ggtgcgcgcg cgcattccgc tggtctcggc ggcgctcggc cagttccagg gccagatcgg
      661 gacgttccgc ggctgggagc cggaccagcc gtgctatcgc tgcttcgtcg gcgacgcttt
      721 cgacgcggac gattgcgaca cctgctccga acagggcgta ctgggcgcca tggcgggact
      781 gatcggcgcc tgggcagcga tggaagccgt gcgcgccatc ctgggcttcg gccccgaccc
      841 cgccggcaaa atccatgtat tcgatggcgt cacttcggcg cttcgcacga tccgcattcc
      901 caaggatccc ggctgtaaga cctgcggagc catcccggcc tgagcgcgcg ccggtgtccg
      961 ccgcggacta gcgcggtttg gtatagggca cgaagtcgcc aaggctgacg aagccgtgcg
     1021 gaatgcggga ggcgcgatcg agcaggcgca ccgtgtcgat ccggcagagt tgcgacccga
     1081 aggttttggt aatcaggata tcgtcgttat cgagctggtt cgcgccgccg ctcgggcggt
     1141 ttacataaag cttgctgccg atcctgaaga cgatcgccgt cttgtcgata atcgtctggt
     1201 tctggacgtc gcgcaggttg atgcaatcga ccggcttgcc ggccgcgcga ccggcgacca
     1261 gcttttcaag ctgtgcctcg gggctgagcc gtgccgcccc ggcggcagtg gcaagagccg
     1321 taagcgccag ccccgcggct gcgaccatcc tgctgagtct tttcattccg cctctatatc
     1381 ccctcgcgcc tgaacatggg gtgaccaagc gctgcccgcc agcttattga cgcttggcca
     1441 acgccccggc agcaaccagc catgctgatc cgccctgccg gtcccaagga tgctgctgcc
     1501 atctggagca tcatcgaacc cgtcatccgc gcaggcgacg tctatgcgct cgaccgcgac
     1561 ctgagcaagg acgaggggct ggcctattgg ttcgaggctg acaaggagac gttcgttgcc
     1621 gaagagagcg ggatcgttct cggcacttac tatttgcgcc cgaaccaggc aggaggcggc
     1681 cggcacgtct gcaactgcgg ctatgcgaca gccgcccacg caacggggcg cggcatcgcc
     1741 cggcagatgt gcctccactc gctggaacac gccagggcgc gcggctatcg ggcgatgcag
     1801 ttcaatttcg tggtcagcac caatgagcgc gcggtcaaac tttggcattc gctcggcttc
     1861 gagaccgtcg gccgccttcc gctggcgttc aaccatccga ccaatggcta tgtcgacgcg
     1921 cttgtgatgt tccggccgct gtagcagccc caaccgcttc agccccgagt gtcggaaatg
     1981 ttcagcgcca cggccgcgcg gacaagcgcc ttcaatgcct cctcgtcaat ctcctcgccc
     2041 tcatggaaat cgattgcgcg cctcgcattg ccgtccaggc tcgagttgaa aaggccggcc
     2101 gggtcctcaa gggccgcccc tttggcgaac gtcattttca ccacctgctt ataggtttcg
     2161 ccggtacaaa tgatgccgtc gtggtaccag gtcggaacgc ctcgccactt ccactcctcg
     2221 acaatatcgg ggtcggcctg tttgaccaag gcgcggagcc gcgacagcat ctcgccccgc
     2281 cagtcgccca gctccctgat cttcccgtcg atcagctcgg atggagattt ttcttcctga
     2341 agcgcgccct tgctcatcac gcccgttctt ttgcgttcgg cttgcgcgca tagggcagca
     2401 cgaacaggta cagcccggtc gccagctgca ggaagagcgg gggcaacggc gaataggtga
     2461 tccaggcggg cggcgtgccc agtcccatgg cgacgaagtt ggcgacgacg gccagcgtaa
     2521 agacgataga taaccagcgg tgggtctgcc gcatccattt gctccagctc aagtaaacct
     2581 ccatccagtt tgcatttgca gcttcaatca gccgccgcca ggacctgctc cagcttcgcg
     2641 aggaactgcg gccagcccag ctttgcgcct ccaaaggcct gcttctgatc cggccggaag
     2701 ccggactgtt ccatgcggag gtgcgtgcct gcgggcgtcg gggtgagtgt aaagacgacc
     2761 acgctcttca gattgaaggc agggtcttcg tgggccaaat cccatgtgta ggacagcttg
     2821 ctgttcggtt cgacagcgag aacctcgcag tcgagcacgc cgccccaatc gccgcgcaga
     2881 ttgaagcggt ggcccacgac cggctcgaaa tcattcttca tcagccattc ctcaatcagg
     2941 tgcggctggg taagcgcgcg ccagattttt tccggcggat gaggaagctc gcgttccacg
     3001 gtgacggagc gcgtttcagt cgcggtgtcg gtcattgatc catccttctg agcaggtctt
     3061 cgaggtggtc gaaacgggct tcccaaaact cggccatctg acgcgtccag tcgaccagcg
     3121 gggccaaggc gcccggctgg gcgctatagt gcgtctggcg gccttcgtgc cgatcgcgca
     3181 ccaatccagc ctgtttcaga acgccgagat gcttcgatac ggcgggctgc gagacgccgg
     3241 cgcgaacggt cagcgccccg acggtctgct ctccctcgcg gcacagccgt tcgaatatgg
     3301 cccgccgagt gggatcggcg agcgtcttga aaagcgtgac gtgcaagttc gccattccca
     3361 atacataact attgagttat ggattggtca atcgcgattt cgggggagcg gctacaaacc
     3421 tgccgtcagc cgctcgatcg tcgccgcccg atcgccttcc accctgagca gcttgagacg
     3481 gctcgtttcg cccgaaacga gcgtcatggc cgatttccgg aggccgagcg ctttgacgag
     3541 gaaagcgatg agctcggaat tggcggcgcc ctccacgggc ggcgcagcga ggcgaatggc
     3601 gagcgcttgc cggccgtcgg gcaatggcgc gatgccggcg atctccgtcc gcgacgccct
     3661 aggtgtgacg cggacggcaa gaatgaggcc gccgtccgtc tccgtccagg gcggcgcgcc
     3721 ggtcacgccc gtttcttggc ggccgccttc ttcgcgccgc cccggccctt tttggccacc
     3781 ggccccgccg cagcacgcgc atcaaggagt tgggcggctt cctccacggt cagtgcctca
     3841 ggcgcgacgg tcttgggcag cgtggcgttg gtcgtgccgt cggtcacata ggggccgaag
     3901 cgcccttcca tcagcttgat ctccgccgcg gtgcgcggat ggacgccaag cacgcgcaac
     3961 ggctcgcgcg agccgccccg ctgcggacgc ccgccaccct tcgccgcatc ggcgagcttc
     4021 gcaaccgccg cgttcatccc gacctcgaac acttcggcgg tcgagccgag ccgcgcatat
     4081 ttgccctgat gcgccaaata gggcccgtag cggccgatcg aggcggtgat ctgctcgccc
     4141 gtctccggat gcgtgcccac cgtccgcggc aggctcagga gcttgagcgc ccattcaaga
     4201 tcgatctcgc caatatcctt cgggatcgag gcgcgcttcg cgtccttacc gtcgccgagc
     4261 tggacatagg gcccgaaccg gccggtcttg cgaaacacct cggcgcccgt ttcaggatcg
     4321 cggccgagcg cgaggtcgcc attgtcgttg gcgccgtcct cgccgccgcc ttgggcgaag
     4381 cggcgggtat atttgcactc agggtaattg gagcaagcga cgaatgcgcc gaaccgtccg
     4441 ccgcggagcg acaggcgccc ctcgccacag ttcgggcaga gccgcgggtc cgacccgtcg
     4501 ccgcgcggcg ggaacagata aggctccaga aactggtcca gagccgcggt gatgtccgag
     4561 ggcttctgct ccatcacctg agcggttttc ggtttgaaat cgcgccagaa atcctcgagc
     4621 acctgctgcc atgcggccct gccgccggag atgtcgtcga gctcttcttc cagcccggcg
     4681 gtgaaatcat agctcacata tttctcgaag aagcgctcca gaaacgcggt caacaggcgc
     4741 ccggtctctt ccggaatgaa gcggttcttc tcgacgcgca catattcgcg atccttaagt
     4801 acctgcagga tcgaggcata ggtcgatggc cggccaatgc cgagctcctc cagcttcttg
     4861 accaggctcg cttcagaata acgcggcggc ggctgggtga agtgctgctc ggcatgcaca
     4921 gcctttttca gcggcgcgtc gccttgcgaa agccgcggga gccggcgcga ttcctcgtca
     4981 tcggcatcgt cgcggccctc ttcataaagc gccagatagc ccgggaagag cacgacctgg
     5041 ccggtcgcgc ggagcgttgt ctggcccgtg ccgtcttcca gctcgacggt ggtccgctcc
     5101 atccgcgccg acgccatctg gctcgcgagc gcgcgcttcc agatcagctc gtagagcttc
     5161 gcgtgatcgc ccgaaccgag ctgggcgcgg ccgaaatcgg tcggccggat cgcttcgtgc
     5221 gcttcctgcg cgttcttcgc cttggtctga tattggcgcg gcttgtcggg gacgtagctg
     5281 ccgtcatagc ggtccgcgat cgcggcgcgc gcagcggaga tagcgctgcc gtccatctgc
     5341 acgccgtcgg ttcgcatata ggtgatcgcg ccgtcttcgt agagattctg cgcaatccgc
     5401 atcgtgtggc tggcggagaa gcccagcttg cgcgccgcct cctgctgcag ggtcgaggta
     5461 gtgaaaggcg gcggcgggtt gcgcgtgagc ggcttggtct cgacgcttgc gacggtgaag
     5521 cgcccggctt cgacggcggc cttcgcggcc tcggcatcgc cgcgcttgcc gatcgtcagc
     5581 cggtcgatct tctcgccttt ccagcgaacc aggcgcgcct gaaacggcgt tccatcctgt
     5641 tccatatcgg cgaaaacgga ccaatattcc tgtggcgtga agacctcgat ctcgcgctcg
     5701 cgatcgacga tcagtcgcag cgcgaccgac tggacgcggc ccgccgactt ggcgccggga
     5761 agcttgcgcc acagcactgg cgacaaagtg aagcccacca gataatcgag cgcgcggcgg
     5821 gcgcgatagg catcgatcag atcctcgtcg agctggcgcg gattggccat ggcctcggtc
     5881 accgccggct tggtgatcgc gttgaaggtg acgcgctcga cctctttcgg cagggctttg
     5941 cgcttcctca gcacttcctg gacgtgccag ctgatcgcct cgccttcgcg atccgggtcg
     6001 gttgcaagga tgaggcgatc cgcctttttc gcctcgtcgg cgatcgcctt cagttgcttg
     6061 gccttgtcgc cgtaagtctc ccactccatc gcgaagccgt tgtccggatc gacggagccg
     6121 tccttagggg gcagatcgcg aatatggcca taagaggcga ggacgcggta atcccggcca
     6181 agatatttct cgatcgtttt ggccttggcc ggcgattcga caatgacaag ctgcattcgg
     6241 aaagggcctc tacgtacgta cgcgcgaggg tggcgacggc ccgagggctt cgtcaagcgc
     6301 cgccgtgcac aacccgaccg tcgtgcctcg cggcagcttc gtcgcattgc ccttcaatgg
     6361 gacagaattg aagctaatct ggatcaatcg agcagatggt tgcgctgact tgaagccgga
     6421 caggcggccc cgcaatggcg ggagcgacaa aatctccttc gcggtcgcgt cacatagtga
     6481 caacgcagga ggttacgatg gtggataccc aagcaggcga cgctcagcat gacctaagga
     6541 cgctcggaga tctgcgcggc cggttccgcg cgctcatcct ccagaatccc aattacttcg
     6601 gtaacgtcca ggacagtcag tttcagtgct ccacgcgtcc gaccgcatca acgtgaacag
     6661 cgggcagacg a
//
LOCUS       DASQVK010000277         3277 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_238573,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000277 DASQVK010000000
VERSION     DASQVK010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3277)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3277)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3277
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_238573"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..803)
                     /locus_tag="VE567_05910"
     CDS             complement(<1..803)
                     /locus_tag="VE567_05910"
                     /inference="COORDINATES: protein motif:HMM:NF042789.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homogentisate 1,2-dioxygenase"
                     /protein_id="HYZ48413.1"
                     /translation="MRSWIHHAKGRHVRQARVGLGDLREEHISRQGFFGPVAMVYRIW
                     GPNEVVRVEGTLHPRRVADTSRVEASDLTDPRGGPEPMLSNADVSVSVSRRAAPMPYA
                     YRNTDGDLLYFVHTGTGSFDTEFGRIPYEPGDYVLIPKSVTFRQVPAADDSHLLLIES
                     RAPLSLTDHQQVGRHMPVDPTVLTLPELCDYGIPAANEYELRVKHGGAYSSIFYRNSL
                     LQSVGWKGDLFPYKLNIRDIIPISSDRIHLPPSAWCTFEAAGFAVITFVP"
     gene            complement(833..1633)
                     /locus_tag="VE567_05915"
     CDS             complement(833..1633)
                     /locus_tag="VE567_05915"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HYZ48414.1"
                     /translation="MSNFRERFVTADDFRIRYLEAGQGRSVETPVVHLHGAGGLMLTP
                     AHGLLSRSFRMIVLEMPGFGTSAENTSARTMSELADTIATAIGALGLDRVHLMGTSFG
                     AKVALWTAVRHPAVIQTLVLEGPAAIRLPGMVPPSGTPEEIARRLYAHPERVPPLPPL
                     DPAVAAKQRALVNRVRGPDRDADLEARMRELPTPTLVVFGTRDDVIAPAVGRIYKELM
                     PDAHLGFIYDAGHEAAMERPEAFAEIVTDFLLRRDAFVISRGRTVLFP"
     gene            complement(1630..2706)
                     /locus_tag="VE567_05920"
     CDS             complement(1630..2706)
                     /locus_tag="VE567_05920"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HYZ48415.1"
                     /translation="MKLSYFETGRYQAPPSLPATWPMAPGAYDRGEGGRVYEGMIERI
                     SLAAKLGFDWVSLSEHHYSPRILTPSPPVGAAYVAARVPDIKIALLGPIVAHNNPVRL
                     AEELAIVDTMSGGRLIVGLLRGTSNEALTYNLNPQESRERTDEGMELILRAWSEPYPF
                     SWQGRYFRYRTVSVWPRPAQAPFPPTFALGTSKEAGLFAARSGIGLGVSYGPFDVMGK
                     ATGAYRDACARHGWEPGPDQIIFRANIIIAETDDVAQRLMEAYPARPPFSLGDKVAEA
                     LLEVDRRNIAGEARPASVNRALPINFVGSGDTIAAQMARCKEQTGAGVLDLGFQTPGT
                     NDPGALMEAMELFGRTVLPRVRAL"
     gene            complement(2735..3025)
                     /locus_tag="VE567_05925"
     CDS             complement(2735..3025)
                     /locus_tag="VE567_05925"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative quinol monooxygenase"
                     /protein_id="HYZ48416.1"
                     /translation="MPVRLVVTLHAEPGQGAALAEAFKARCAEVMQEPGCEQFEVFRS
                     ILDPDKLTLLELWRDQAALDTHAKVNATRAPLPPGLRAPGGSREDYEYNKTR"
BASE COUNT          570 a         1086 c         1056 g          565 t
ORIGIN      
        1 ggaacaaagg tgatcaccgc aaaacccgcc gcctcgaacg tgcaccatgc cgatggcggc
       61 aaatggatcc gatcggaact gatcgggatg atgtcgcgga tgttgagctt gtaggggaac
      121 aggtcgccct tccagccgac cgattgcagc aggctattgc gatagaagat tgagctgtat
      181 gctcccccgt gcttcacgcg caactcgtat tcgttggcag ctggaatgcc gtagtcgcac
      241 agttccggca gcgtcagcac cgttgggtcc accggcatgt gacgcccgac ctgctgatgg
      301 tctgtcagcg acagcggcgc gcgcgactcg atgagcagca gatggctgtc gtcggccgcc
      361 ggaacttggc gaaaggtgac cgacttcggg atcagcacgt aatcgccggg ctcatacggg
      421 atgcggccga actcggtatc gaaactgccg gtgcccgtgt ggacgaaata cagcaggtcc
      481 ccgtcggtgt tgcggtaggc atagggcatc ggggccgccc gccggctgac gctcaccgaa
      541 acatcggcgt tggacaacat cggctctggc ccgccgcgcg gatcggtcag gtccgaagcc
      601 tcgacccgcg acgtgtcggc gacgcggcgg ggatgcaacg tgccctcgac acgaacgacc
      661 tcgtttggcc cccagatgcg gtagaccatg gcaactgggc cgaagaagcc ctggcggctg
      721 atatgttcct cgcgcagatc gcccaaccca acgcgggcct gccggacatg gcgccctttg
      781 gcgtgatgaa tccaggaacg catcgtatga cactcctttc ttcagcgatg tatcagggaa
      841 acaggacggt cctgccgcgg ctgatcacga acgcgtcccg ccgcagcagg aagtcggtga
      901 cgatttcggc gaaggcttcc ggccgctcca tggccgcctc gtgcccggcg tcgtagatga
      961 agcccagatg cgcgtcgggc atcagctcct tgtagatgcg gcccactgca ggcgcgatta
     1021 cgtcgtcccg cgtgccgaac accaccaacg tcggcgttgg cagttcccgc atccgcgctt
     1081 ccaggtcagc gtcccggtca ggcccgcgga cccggttcac caacgcccgc tgcttcgcag
     1141 cgaccgccgg atcgagcggc ggcagcggcg gcacccgttc ggggtgggcg tagagccgcc
     1201 gggcgatctc ttccggcgtg ccggacggcg gcaccatgcc cggcaatcgg attgccgctg
     1261 gaccttcgag caccagcgtc tggatcaccg cgggatgccg caccgccgtc catagcgcga
     1321 ccttggcgcc gaacgacgtg cccatcagat gcacccgatc cagcccgagc gcgccgatcg
     1381 ccgtcgcaat cgtgtccgcc agctcggaca tcgtccgggc gcttgtgttc tcggcggagg
     1441 tcccgaagcc cggcatttcc agcacgatca tgcggaagct gcggctgagc agtccatgcg
     1501 ccggcgtcag catcagcccg cccgcgccat gcagatgcac gaccggggtc tcgaccgacc
     1561 tcccttggcc ggcttcgagg tagcggatac gaaaatcgtc cgccgtcacg aagcgttcgc
     1621 gaaaattgct catagggcac gcacccgcgg caggacagtc cggccgaaca gttccatcgc
     1681 ttccatcagc gcccccggat cgttggtccc cggcgtctgg aagccaaggt ccaggacacc
     1741 cgcgccagtc tgctccttgc aacgagccat ctgcgccgca atcgtatccc cgctgcccac
     1801 gaagttgatt ggcagcgcgc ggttgacgct ggctggccgc gcctccccgg cgatgttccg
     1861 ccggtccacc tccagcaacg cttcggcgac cttgtcgccg agcgaaaacg gcggccgcgc
     1921 tggataggcc tccatgaggc gctgcgccac gtcatccgtt tccgcaataa tgatgttggc
     1981 gcggaagatg atctggtccg gcccaggctc ccagccgtgc cgcgcgcagg cgtcgcgata
     2041 ggcgccggtc gccttgccca taacgtcgaa cggaccatag gacacaccca gaccgatccc
     2101 gctgcgcgcg gcgaagagcc cagcttcctt gctggtgccc agcgcaaacg tcggcgggaa
     2161 cggcgcctgc gcgggccgcg gccagaccga gacggtgcgg tagcgaaagt accgcccctg
     2221 ccaggaaaat ggatacggct ccgaccacgc cctcaggatc agctccatcc cctcgtcagt
     2281 gcgttcgcgc gactcctggg ggttgaggtt gtaggtcagc gcctcgttcg atgtgccgcg
     2341 caacaggccc acaatgaggc gtccgcccga catcgtatcg acaatcgcca gttcctcggc
     2401 gaggcgcacg gggttgttgt gcgcgacgat cgggcccagc agcgcgatct tgatgtccgg
     2461 cacccgggcg gcgacatagg ccgcccccac agggggtgag ggcgtcagga tacggggcga
     2521 ataatgatgc tccgacaggc tgacccagtc gaagccgagt ttcgctgcca ggctgatccg
     2581 ctcgatcatg ccctcataca cccggccgcc ctcgccccgg tcataggcgc cgggtgccat
     2641 cggccaagtc gctggcaggg acggcggagc ctggtaacgg ccggtttcaa agtaggagag
     2701 cttcatcgtg gagacctccc ctggcacatg ggctctagcg ggtcttgttg tactcgtaat
     2761 cttcgcggga gccgccgggc gcgcgcaggc cgggcggcag cggtgcccgt gtggcattga
     2821 ctttggcatg cgtgtcgagc gccgcctggt cgcgccagag ttccagcaaa gtcagcttgt
     2881 cggggtcgag aatgctacgg aatacttcaa attgctcgca gccgggttcc tgcatgacct
     2941 cggcgcaacg ggctttgaag gcttccgcca gcgcggcgcc ctggccgggt tcggcatgga
     3001 gggtgacgac aaggcggacg ggcatggcgg ttcgctccct gttttctggg atttggcgcc
     3061 tcgccgcgcc cggcgtcaaa ccgaggactg cgtcactggc ctgatcattc actttgtagg
     3121 ctcagctcgg agcaaaaccg atgaagatct ttcaagcgtt gcgccggtcg cgatacgacg
     3181 aacgcttggc ttcattgact atttccggcg tttttgagcc acgtcgagga agtcacgcct
     3241 gtctgcctcg agaacggcag ccttacttgt aaagtcc
//
LOCUS       DASQVK010000278         5142 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_18051, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000278 DASQVK010000000
VERSION     DASQVK010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5142
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18051"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..545)
                     /locus_tag="VE567_05930"
     CDS             complement(<1..545)
                     /locus_tag="VE567_05930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
                     /protein_id="HYZ48417.1"
                     /translation="MRDAVIVSTARTPIGRAYRGAFNNLPSPTLAAHAIRAAVERAKI
                     DPAEVQDVVFGAALQQGHQAGNIARTALLRAGLPIGVAGMSVDRQCASGLMAIATAAK
                     EIVTDNMDIAIGGGVESISLVQTPQMRVAPDPELVAMHKDIYMPMLQTAEVVAKRYNV
                     SRDAQDEYALQSQQRTAAAQAA"
     gene            complement(732..1190)
                     /locus_tag="VE567_05935"
     CDS             complement(732..1190)
                     /locus_tag="VE567_05935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011542446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HYZ48418.1"
                     /translation="MPTVSIEDFKARVGQHLGTSDWLTVDQAMIDKFAAATGDHQFIH
                     VDPERAKLTPFGGTIAHGFLSLSLMPQLNQMTDMPRPEGVKMGVNYGGNKTRFLAPVR
                     SGKRVRGHFKLLELEEKRPGQWQQTVEYTLEIEGEEKPALIAEWISQFFV"
     gene            1275..4271
                     /gene="putA"
                     /locus_tag="VE567_05940"
     CDS             1275..4271
                     /gene="putA"
                     /locus_tag="VE567_05940"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008603603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0003842 - 1-pyrroline-5-carboxylate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0004657 - proline dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0010133 - proline catabolic process to
                     glutamate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase PutA"
                     /protein_id="HYZ48419.1"
                     /translation="MDSATSPFRPSLKKLHRAPEPEVLKPLLERARLTPGEREGAVQV
                     ALGLLADLRAAQSSGWVNQFLQQYRLNSSEGVALLSLAEAFLRVPDPETADLLIADKL
                     GEADWKAHAGASSSKLVNTATWGLIVGKALVSESGQGGVLRRLIARAGEPFVRQAVGA
                     AMRMMGEVFVMGRTIDEAMRRMKKPENRGFTASFDMLGEAARTFPDGGRYFEAYAKAI
                     EAVGSDPAAGHSISVKLSALHPRYEVPQWDRCVPALTEMLEALCIQAADKGIALTVDA
                     EESERLEMSLEIIEAVARLPRLKGWDGYGMAVQAYGKRARAVIGWADALGQDTGRRMN
                     VRLVKGAYWDSEIKRTQEAGLSDYPLFTRKAATDVSYLACAKDMLAAKGIAPAFASHN
                     ALTVATIVAWAGGSRDFEFQRLHGMGEGLYERLVQEDGYRCRIYAPVGGHRDLLAYLV
                     RRLLENGANSSFVHQLADARLTDEELLADPVEKIAKVGGERHPSIPLPRDLFAPERRN
                     SEGVDLQDREELASVSRGISRAPFASSEVEKRISTSLDSSGAIGKAQRSYPAWTARPV
                     HERAACLDRLADLLEAHRTELMAICVHEARKTIPDALAEVREAVDFCRYYADQARAGL
                     QPVELPGPTGERNVLRMEGRGVWATIAPWNFPLAIFLGQTVAALVAGNAVIAKPAPQT
                     PRIAARAVALAHEAGVPEDVLILAAGGPEVGAAIVADPRIAGVAFTGSTATARKIARS
                     LLEDERRPLVPLIAETGGVNAMIVDSTALAEQVVQDVVTSSFRSAGQRCSALRLLLLQ
                     EEIADSTLEMLSGAMDTLIVGDPADPATDVGPVIDRTAYEHLMGHRERMRNSWIKTID
                     VPAEGNFVPPTTIRLRSMDDLDREWFGPLLHIATWKAGELDETVERVNAKGFGLTMGL
                     HSRIARSAEGVEALARVGNLYVNRSMIGAIVGSQPFGGEGFSGTGPKAGGPHYLPRFC
                     AERVTSTDTTSSGGNATLLSLDDIGF"
     gene            complement(4272..5003)
                     /locus_tag="VE567_05945"
     CDS             complement(4272..5003)
                     /locus_tag="VE567_05945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extensin family protein"
                     /protein_id="HYZ48420.1"
                     /translation="MRIARRLWRATIIAALLIALICWYLVWTRAHPQDSPFTELDLTQ
                     PVGLFTGRKLAALDNDTQLCHTLLFRAAVDYRPLPPAGSAQCAYDNAVRLGQGGARRI
                     AFRPERLDVSCPVAAGLAVWEWRVVQPAAKRIFGARVTAIDHFGSYSCRRIYGRSTGD
                     WSEHARANALDVAGFRLADGRRITVVNGWNKGTPDEQAFLREVRDGACRLFATVLSPD
                     YNAAHRDHLHLDEAERGAFGGRACR"
BASE COUNT          820 a         1605 c         1863 g          854 t
ORIGIN      
        1 gcggcctggg cggcggcggt gcgctgctgc gactggagcg catattcatc ctgcgcgtcg
       61 cgcgagacgt tatagcgctt cgccacgacc tcggcggtct gcagcatcgg catatagatg
      121 tccttgtgca tcgcaaccag ctcgggatcg ggcgcgacgc gcatctgcgg cgtctggacc
      181 aggctgatgc tctcgacgcc gccgccgatc gcgatgtcca tattgtccgt gacgatttcc
      241 ttggccgcgg tggcgatcgc catcagcccc gaggcgcact ggcggtccac cgacatgccg
      301 gcgaccccga tgggcaggcc ggcgcgcagc agcgcggtgc gggcgatgtt acctgcctgg
      361 tggccctgct ggagcgcggc gccgaacacc acgtcctgca cttcggccgg atcgatcttc
      421 gcgcgctcga ccgcggcgcg gatcgcatgc gcggcaagcg tgggggaggg caggttgttg
      481 aaagcgccgc gataggcgcg gccgatcggc gtgcgggcag tggaaacgat gacggcgtcg
      541 cgcatggtgc tgacctctcc tggatggctt tggagtcggc gcttacgcga ggaggggggc
      601 agattccaaa cccgctacgg aaaaggggaa gcgcgagcgc ctccccttcc ccctgttcgt
      661 tccgcagaac gcctggaggt gtgtagcggt aagcttgctg acaggattgt aagaaatcga
      721 cagtcgggca gctagacgaa gaattggctg atccactcgg cgatcagggc gggtttctcc
      781 tcgccttcga tttccagcgt atattcgacc gtctgctgcc attggccggg ccgtttttcc
      841 tcgagctcca gcagcttgaa atggccgcgc acgcgcttgc cggagcggac cggagcgaga
      901 aagcgggttt tgttgccgcc ataattgacg cccatcttca ccccctcggg gcgaggcatg
      961 tcggtcatct ggttgagctg cggcatcaat gagagcgaga ggaaaccgtg cgcgatcgtg
     1021 ccgccgaacg gcgtcagctt cgcgcgctcg ggatcgacat ggatgaattg atggtcgccg
     1081 gtcgcagccg cgaatttgtc gatcatcgcc tggtcgacgg tcagccagtc ggacgtgccg
     1141 agatgctggc cgacccgggc cttgaagtct tcgatgctga ctgtcggcat ggcctttttt
     1201 ccttctcctt tctggcgcat aggcgcggca ctttccctga aatcgagcgc ccggcaaggg
     1261 cgggaccaag agccatggat tccgcaacgt caccttttcg accgtcactc aaaaaactgc
     1321 atcgcgcccc cgaacccgag gtcctgaagc cgctgctgga gcgggcgcga ctcacccctg
     1381 gcgagcgcga aggcgcggtg caggtcgcgc tcggcctgct cgccgatctg cgggcggcgc
     1441 agtcgagcgg ctgggtcaac cagttcctgc agcaatatcg gctgaactcg tcggaagggg
     1501 tggcactgtt gtcgctcgcc gaggcgttcc tgcgcgtgcc cgaccccgag acggccgacc
     1561 tgctgatcgc ggacaaattg ggggaggctg actggaaagc ccatgcgggc gcctcctcgt
     1621 ccaagctggt caataccgcg acctgggggc tgatcgtcgg caaggcgctg gtgagcgaga
     1681 gcgggcaggg cggcgtgctc cgccggctga tcgcacgcgc gggcgagccg ttcgtgcgtc
     1741 aggcggtggg tgccgcgatg cggatgatgg gcgaagtctt cgtgatgggc cgcaccatcg
     1801 acgaagcgat gcggcgcatg aagaagcccg agaacagggg cttcaccgcc agcttcgaca
     1861 tgctgggcga ggcggcgcgc accttccccg acggcggccg ctatttcgaa gcctatgcga
     1921 aggcgatcga agcggtcggc tcggaccccg cggcagggca ttcgatttcg gtcaagctct
     1981 ccgcgctcca tccgcgctat gaagtgccgc aatgggaccg gtgcgtgccc gcgctcaccg
     2041 aaatgctgga ggcgctgtgc atccaggcgg cggacaaggg catcgcgctg accgtcgacg
     2101 cggaggaatc cgaacggctg gaaatgagcc tcgagatcat cgaggcggtt gcgcggctgc
     2161 cgcgtctcaa gggctgggac ggctatggca tggcggtcca ggcctatggc aagcgcgccc
     2221 gcgcggtgat cggctgggcc gacgccctgg ggcaggacac cgggcggcgc atgaacgtgc
     2281 ggctcgtcaa aggcgcctat tgggatagcg aaatcaagcg gacgcaggaa gcggggctat
     2341 cggactaccc gctgttcacg cgcaaggcgg cgaccgacgt gtcctacctc gcctgtgcga
     2401 aggacatgct ggcggccaag ggcatcgcgc cggcctttgc gagccataat gcactgacgg
     2461 tcgcgacgat cgtggcctgg gcgggcggga gccgcgattt cgagttccag cgactgcacg
     2521 gcatgggcga agggctttac gagcggctgg tgcaggagga cggctatcgc tgccgcatct
     2581 acgcgccggt cggcggccat cgcgacctgc tcgcctatct ggtgcgccga ttgctggaga
     2641 atggggcgaa ttcgagcttc gtccaccagc ttgccgacgc gcggctgacg gacgaggaac
     2701 tgctcgccga cccggtcgag aagatcgcga aagtgggcgg cgaacgccat ccgagcatcc
     2761 cgctgccgcg cgacctgttc gcgcccgagc ggcggaacag cgaaggggtg gaccttcagg
     2821 atcgggagga gctggcttcc gtttcccgcg gaatcagccg ggcgccgttc gcttcgagcg
     2881 aagtcgagaa gcgtatctcg acttcgctcg attcgagcgg agctatcggg aaagcgcaac
     2941 gctcgtaccc cgcctggact gcgcggccgg tgcatgagcg cgccgcctgt ctcgaccggc
     3001 tggcggacct gctggaggcg catcgcaccg agctgatggc gatttgcgtc cacgaagcgc
     3061 gcaagaccat tcccgacgct ctcgcagaag tgcgggaggc agtcgatttc tgccgctatt
     3121 atgcggacca ggcgcgggct ggcctgcagc ccgtcgaact gccgggccct accggcgagc
     3181 gcaatgtgct gcgcatggaa gggcgtgggg tctgggcgac gatcgcgccg tggaatttcc
     3241 cgctggcgat cttcctcggg cagaccgtgg cggcgctggt ggcgggcaat gcggtgatcg
     3301 ccaagcccgc gccgcagacg ccgcggatcg ccgcgcgtgc ggtcgcgttg gcgcatgaag
     3361 cgggggtgcc tgaagacgtg ttgatcctgg cggccggcgg gcccgaggtt ggcgcggcga
     3421 tcgtcgccga tccgcggatc gccggcgttg cctttactgg ctcgaccgcc acggcgcgca
     3481 agatcgcccg gtcgctgctg gaggacgagc gccggccgct ggtgccgctg atcgcggaga
     3541 cgggcggcgt caatgcgatg atcgtcgatt cgaccgcgct cgccgagcag gtggtgcagg
     3601 atgtggtcac ttcctcgttc cgctcggccg ggcagcgttg ttcggcgctg cggctgctgc
     3661 tgttgcagga ggagatcgcg gactcgacgc tcgagatgct ctcgggcgcg atggacacgc
     3721 tgatcgttgg cgacccggcc gatccggcaa ccgatgtggg gccggtgatc gaccgcacgg
     3781 cctatgagca tctgatgggc catcgcgagc ggatgcggaa cagctggatc aagaccatcg
     3841 acgtgccggc cgaggggaat ttcgtgccgc cgaccacgat ccgccttcgc tcgatggacg
     3901 atctcgaccg cgaatggttc gggcccttac tgcatatcgc gacctggaaa gcgggcgagc
     3961 tggacgagac ggtcgagcgc gtgaacgcca agggctttgg cctgacgatg gggctgcaca
     4021 gccgcatcgc gcgctcggcc gagggcgtcg aggcgctggc gcgggtcggc aacctttacg
     4081 tcaaccgatc gatgatcggc gcgatcgtgg gctcgcagcc ctttggcggc gaaggcttca
     4141 gcggcacggg gccgaaggcg ggcgggccgc attatctgcc gcgcttctgt gccgagcgag
     4201 tgaccagcac tgacacgacc agctcagggg gcaatgcgac gctgctgagt ttggacgata
     4261 tcggcttcta gctagcggca tgctcgcccg ccgaacgcgc cgcgttccgc ctcgtcgagg
     4321 tgaaggtggt cgcggtgggc ggcgttatag tcggggctca gcacggtcgc gaacaacctg
     4381 caggcgccgt cgcggacttc gcggaggaat gcctgctcgt ccggcgtgcc cttgttccag
     4441 ccgttgacga cagtgatgcg ccgcccgtcg gcgaggcgga agccggcgac gtcgagggcg
     4501 ttggcgcggg catgctcgct ccagtcgccg gtcgagcggc cgtagatgcg gcggcaggaa
     4561 tagctgccga aatggtcgat cgcggtgacg cgcgcaccga agatccgctt ggcggccggc
     4621 tggaccacac gccattccca gactgcgagg cctgccgcga ccgggcagga gacgtccagc
     4681 cgctcgggcc ggaaggcgat ccgccgcgcg ccgccttggc cgagccgaac cgcattgtcg
     4741 taggcgcatt gcgccgaccc ggccggcggc agcggccggt agtcgaccgc ggcgcggaag
     4801 agcagggtgt ggcaaagctg agtgtcgtta tcgagggcgg ccagcttgcg gcctgtgaag
     4861 aggccgaccg gctgcgtgag gtcgagttcg gtgaagggcg aatcctgcgg atgcgcgcgc
     4921 gtccagacca gataccagca gatgagcgcg atcaggagcg ccgcgatgat cgtcgcgcgc
     4981 cacagtctgc gcgcgatcct catttcagcc tcgcatgacg gtggtccatc gctccgccgt
     5041 caccggatag ccgaggccgt cggggatgca gagccagggc ccgtcctcgc gctcctcctc
     5101 gaacggcgtg atcggggtga tcggatgggc aagggcgtgc tg
//
LOCUS       DASQVK010000279         3606 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_207875,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000279 DASQVK010000000
VERSION     DASQVK010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3606
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207875"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..630)
                     /locus_tag="VE567_05950"
     CDS             complement(<1..630)
                     /locus_tag="VE567_05950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HYZ48421.1"
                     /translation="MRIGRIETFIVPPRWLFVRVEADDGHFGWGEASLEGHAEAVEGA
                     FEALRDRFIDHDPRRIEDIWQIGYRGGFYRGGPVLMSALSGLDQALWDLKGRAMGAPA
                     WELLGGRVRDRIRAYAWIGGDRPHEIGVAAMARAAQGFTAVKMNATAELDWIGTSKLF
                     DEVVARVQAAQSEGMDVGLDFHGRVHRPMAKQLARRLEPLGLLFIEEPLL"
     gene            complement(639..1934)
                     /locus_tag="VE567_05955"
     CDS             complement(639..1934)
                     /locus_tag="VE567_05955"
                     /inference="COORDINATES: protein motif:HMM:NF012457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HYZ48422.1"
                     /translation="MFCTGIENSIPTIDNGKTRVDQMEVCGHYKHWRTDFELLEELGI
                     QYLRYGPPIHKTYLGPGKYDWDFADMTFAELRRKDITPIVDLCHFGLPDWLGNFQNTD
                     FPALFADYAAAFAERFPWVQLYTPVNEMFICATFSARYGWWNEQLQGDRPFVNALKNI
                     VKANVLAMKCILQRRADAIFIQSESSEYFHAENPAAIGPAEILNAMRFLSLDLNYGRR
                     VDSEMYEYLFDNGMTKEEYHFFLGNRVKQHCILGNDYYWTNEHRVAADGHSVASGEVF
                     GYTEITRQYYDRYRLPVMHTETNLIEGPNGDEAVQWLWKEWASMLRLRNEGIPTVGFT
                     WYSLTDQVDWDVALREKRGTVNPLGLYDLDRNIRAVGRAYKQLIRDWRDVLPASSVCL
                     VVPIVPPSHYQQMEAREAERSQRVVNLRPSATQHNPQTS"
     gene            complement(1967..2905)
                     /locus_tag="VE567_05960"
     CDS             complement(1967..2905)
                     /locus_tag="VE567_05960"
                     /EC_number="3.1.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HYZ48423.1"
                     /translation="MGDGTVGPQLRFAAKASFPDRNILVEFSTQTIAPVEAVLGEGPV
                     WVVREQALWWVDIKGPAIFRWREGQGVDRWTPPLRICSLAPAARGGLVGGTEHGFYWI
                     DPEAERYEPIGDPERDLSDNRFNDGKVDREGRFWAGTMDDRELEARGSLYRLDPTLEW
                     ERVDTGYMVSNGPAFSPDGRTMYHTDSAQRLIYAFDLDADGNAASRRPFARFKDEHGY
                     PDGMTVDAEGCLWVAFWDGWCVRRVSPDGEVLQAVELPVQRPTSCAFGGPSLDRLFVT
                     SARIGLNQNALAMQPLAGALFMVECSVRGLPERAFG"
     gene            2916..>3606
                     /locus_tag="VE567_05965"
     CDS             2916..>3606
                     /locus_tag="VE567_05965"
                     /inference="COORDINATES: protein motif:HMM:NF016894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxygalactonokinase"
                     /protein_id="HYZ48424.1"
                     /translation="MDWANGFIAVDWGTTNRRAWAVDSNGATRELIEDDLGVLKVDAG
                     GFPAQIASLRARFGERPMLMAGMVGSNRGWVEAHYVPAPATLGDLVAALARPQEGVCI
                     VPGVSWRAERTGDVMRGEEVQVLGALAGGLIAADGPVCHPGTHAKWVRMQGGAIGPFR
                     TVMTGELFSLLSRHGILQDRLQGEVGPDDSFRAGVDHGLSCDDLPAELFSIRARYLLG
                     LGDDGASYASGL"
BASE COUNT          637 a         1166 c         1169 g          634 t
ORIGIN      
        1 aagcagcggc tcttcaatga acagcagccc caagggctcg agccgccggg cgagctgctt
       61 ggccatcggc cgatgcacgc gcccgtggaa atccaggccg acatccatgc cttccgactg
      121 cgccgcctgc acgcgcgcga cgacctcgtc gaacagcttc gacgtcccga tccagtcgag
      181 ctcggcggtg gcgttcatct tgaccgcggt gaagccctgg gccgcgcgcg ccatcgccgc
      241 cacgccgatt tcgtgcgggc ggtcgccacc gatccaggcg tatgcgcgga tccggtcgcg
      301 cacgcggccg cccagcagtt cccaggcggg cgcgcccatc gctcggccct tcaggtccca
      361 gagcgcctgg tccagcccgg aaagcgccga catcagcacc ggcccgcccc gatagaaacc
      421 gccgcgatag ccgatctgcc agatatcctc gatccggcgg ggatcatggt cgatgaagcg
      481 gtcccgcagc gcctcgaacg cgccctcgac ggcttcggca tggccttcca ggcttgcttc
      541 gccccagccg aaatgcccgt catccgcctc gacgcggacg aacagccagc ggggcggcac
      601 gatgaacgtc tcgatccggc cgattcgcat ggggctgctc agctcgtctg cggattgtgc
      661 tgggtcgcgc tcggccgcag attgaccacg cgctgggagc gctccgcctc gcgcgcttcc
      721 atctgctggt aatgcgacgg cggcacgata ggcacgacga ggcacacgct ggaggcgggc
      781 agcacgtcgc gccagtcgcg gatcagttgc ttataggcgc ggccgacggc gcggatgttg
      841 cgatcaaggt catacaggcc gagcgggttc actgtccctc gcttctcgcg caaggcgacg
      901 tcccaatcca cctggtcggt cagcgaatac caggtgaagc cgacagtggg gatgccttcg
      961 ttgcgcaggc gaagcatgct cgcccattcc ttccacagcc actgcaccgc ctcgtcacca
     1021 ttgggacctt cgatgagatt cgtctcggtg tgcatcaccg gcaagcggta gcgatcgtaa
     1081 tattggcggg tgatctcggt ataaccgaac acttcgcccg atgcgaccga atgtccatcc
     1141 gccgctacgc ggtgctcgtt ggtccaataa tagtcgtttc ctagaataca gtgctgcttc
     1201 actcgattgc cgaggaagaa atgatattcc tccttggtca tcccgttatc gaacagatat
     1261 tcgtacatct cggaatcgac gcggcgacca taattcaggt ccagagacag gaagcgcatc
     1321 gcgttcaata tttcggccgg gccgatcgca gccgggtttt cggcgtggaa atattcggat
     1381 gactcggact ggatgaagat cgcgtccgcg cggcgttgaa ggatgcactt cattgccagc
     1441 acattggctt tgacaatgtt cttgagcgca ttgacgaagg ggcggtctcc ctgcagctgc
     1501 tcgttccacc acccatagcg cgccgagaaa gtcgcgcaga tgaacatctc gttcaccggc
     1561 gtataaagct gcacccaggg gaagcgctcc gcgaacgcgg ccgcgtaatc ggcgaagagc
     1621 gccggaaagt ccgtattctg gaaattgccg agccagtccg gcaggccgaa atggcagaga
     1681 tccacgatgg gggtgatgtc cttccgcctc agttcggcga aggtcatgtc cgcgaagtcc
     1741 cagtcatatt tgccggggcc cagataggtt ttgtggatgg gcgggccgta gcggagatac
     1801 tggatgccca gttcctccag cagctcgaaa tcggtgcgcc aatgcttgta gtggccgcac
     1861 acttccatct ggtcgacgcg ggtcttgccg ttgtctatcg tcgggatact gttctcgatc
     1921 ccggtacaga acatgaagtt ggcgatggct ctgccctccc tgcagttcag ccgaacgctc
     1981 gctcgggaag gccccgaacc gagcactcga ccataaagag cgcgcccgcc aaaggttgca
     2041 tcgcgagcgc attttgattg agcccgatgc gggcggacgt gacgaacaag cggtcgagcg
     2101 aaggaccgcc gaatgcgcag ctggtcggcc gctggacggg cagttccact gcctgcagca
     2161 cctcgccatc gggtgagacg cggcggacgc accagccgtc ccagaaggcg acccagaggc
     2221 agccttcggc atccaccgtc atgccgtcgg gatagccatg ctcgtccttg aagcgcgcga
     2281 aggggcgacg gctggcggcg ttgccgtccg cgtcgagatc gaatgcgtag atcagtctct
     2341 gcgcggaatc ggtgtgatac atggtgcggc cgtccggact gaatgccggg ccgttggaga
     2401 ccatatagcc cgtatccacc cgctcccact cgagcgtggg atcgagccga tagaggctcc
     2461 cgcgcgcttc cagctcgcga tcgtccatcg tgcctgccca gaaacggcct tcgcgatcga
     2521 ccttgccgtc gttgaagcga ttgtcggaca gatcgcgttc gggatccccg atcggctcgt
     2581 agcgctccgc ctccggatcg atccagtaga agccatgctc cgtcccgccg acaaggccgc
     2641 cgcgcgcagc cggcgcgagc gagcaaatgc ggagcggcgg ggtccagcgg tcgaccccct
     2701 gcccctcgcg ccagcggaag attgccggcc ccttgatgtc cacccaccag agcgcctgct
     2761 cgcgtactac ccagaccggg ccctcgccca gcacggcttc aacgggcgca atcgtctgtg
     2821 tggaaaactc gaccaaaatg ttgcgatccg gaaatgacgc tttggccgcg aaacgaagtt
     2881 gcggcccgac cgttccgtcg cccatggcgg gcagcatgga ctgggcgaat ggatttatcg
     2941 cggtcgattg gggcacgacc aaccgccgcg cctgggcggt ggattcgaat ggcgccacac
     3001 gcgagctgat cgaggacgat ctgggcgtct tgaaagtcga cgccggcggc ttccctgccc
     3061 aaatcgcgag tctgagggcg cgcttcggcg agcgaccgat gctgatggcc ggcatggtgg
     3121 ggtcgaaccg cggctgggtg gaggcacact atgttcccgc tcctgcgacg ctcggcgatc
     3181 tcgtggcggc gctggcgcga ccgcaagaag gtgtctgcat cgtgcccggc gtcagctggc
     3241 gcgcggagcg caccggcgac gtgatgcggg gcgaggaagt gcaggtgctg ggcgcgctcg
     3301 ccggcggact gatcgcggcg gacgggcctg tctgccatcc cgggacgcat gccaaatggg
     3361 tgcggatgca aggcggcgcg atcggcccat tccgaaccgt gatgacgggc gagctgttca
     3421 gcctgctgtc gcggcacggc atcctgcagg accggctgca aggcgaagtt gggccggacg
     3481 acagtttccg cgcgggcgtc gatcacggcc tttcctgcga cgacctgccg gctgagttat
     3541 tctcgatccg cgcccggtat ttgctcgggc tcggcgatga cggcgccagc tacgcgagcg
     3601 ggctgc
//
LOCUS       DASQVK010000280         2526 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_334376,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000280 DASQVK010000000
VERSION     DASQVK010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2526
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334376"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2300
                     /locus_tag="VE567_05970"
     CDS             <1..2300
                     /locus_tag="VE567_05970"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYZ48425.1"
                     /translation="VHMIRTIFFVTTSLWAGIAAAQDAPLGTGDAQEIVVTGTRANGR
                     AAIESSAPIDVVGSEAIENTGYPDLSRALNFLQPSVNFARAATTASATNTRPITLRGL
                     SPDQTLVLINGKRRHANAVLNVNNSIGRGSAGVDFDTIPESAIERIEILRDGAAAQYG
                     SDAIAGVVNIILKSNAHGGSGALLGGVTEEGDGLNAMATATAGFGLGEGGHLTVTALA
                     RHQDPTNRAFTDQRFNRVTYRIGDPFASVASLAVDAAVPFGDAELYGFGTVTKKVSNN
                     AAGFRIPGFSPAYPNGFLPIVEPTIWDVGATIGLKGTLGSLHADLSQTYGYNKADFRV
                     FDTANASLGANTPTRFDSGGVTYQQYVTDLTLSLPLDGVLAGGNIAAGGQYRHESYAI
                     RNGEPLAYFGTGADGFAGFNPRNPTHAGRNAYAGFLDVELRPIAPLLLGGALRYDHYG
                     DFGGQTTWRATGRFDAAPGVALRATFGTGFKAPSLQQQYYSAVQGALSAGVLVNVATL
                     PVSDPISRALGAAPLKPERSRNATAGIVFGPFDGFTFTADYFDIRIRDRIALSEQLGG
                     AAVNAILKGAGITGFSQVRFFTNAVDTTTRGVEVTGRWQGSLGPDTRLSVTAGYSWLD
                     NRLNTLRPNPVLPNLPLLATKSILFLTEAQPRAKGSLQLNLSHRRFDLGASLTAFGTY
                     TSAPLVQVQTFGGKESIDLSAGYAFAKGLQLQLGVQNLLDVRPDPIADQNKAIAATGG
                     SFPTGEETPLGLNGRSYYARLSARF"
     gene            2300..>2526
                     /locus_tag="VE567_05975"
     CDS             2300..>2526
                     /locus_tag="VE567_05975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004207321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoD-like phosphatase N-terminal
                     domain-containing protein"
                     /protein_id="HYZ48426.1"
                     /translation="MINRRTLLASAAALAAARFADAGASARVRESRIRFDRYPFALGV
                     ASGDPSTDGFVLWTRILGLEEDAAVAWEVAE"
BASE COUNT          439 a          865 c          790 g          432 t
ORIGIN      
        1 gcgtgcacat gatccgaacc atcttcttcg tcacgacaag cttatgggcg gggatcgcgg
       61 ctgcgcagga cgcgcccctg gggaccggtg acgcacagga gatcgtcgtt acgggcacgc
      121 gcgcgaacgg ccgcgccgcg atcgaatctt ccgcgcccat cgacgtggtt ggcagcgaag
      181 cgatcgaaaa caccggctat cccgatctca gccgcgcgct caatttcctt cagccatccg
      241 tcaacttcgc ccgcgccgcg accaccgcga gcgcgaccaa cacgcggccg attacgctcc
      301 gcggcctctc acccgatcag acgctggtgc tgatcaacgg caagcgccgt cacgctaatg
      361 cggtactcaa cgtcaacaac agcattggcc gcggctcggc cggcgtggac ttcgacacca
      421 ttcccgagag cgcaatcgaa cgtatcgaga tcctgcgcga cggcgctgcg gcgcaatatg
      481 gatcggacgc aatcgcgggc gtcgtgaaca tcatcctcaa gtcaaatgcg catggcggtt
      541 cgggcgcgct gctcggcggc gtaaccgaag agggcgacgg gctgaatgcc atggccactg
      601 cgaccgccgg ctttgggttg ggagagggcg ggcacctgac cgtcaccgcg ctcgctcggc
      661 atcaggaccc gaccaaccgc gcctttaccg atcagcggtt caaccgcgtc acctatcgca
      721 tcggcgatcc gtttgcgtcg gtggcaagcc ttgcggtcga cgccgccgtg ccgttcggcg
      781 acgccgagct ctacggcttc ggcacggtca ccaagaaggt gtcgaacaat gcagccggct
      841 tccgtatccc tggcttctcg cccgcctatc ccaatggttt tctgcccatc gtcgagccga
      901 ccatctggga cgtgggcgca acgatcgggc tgaagggcac gctggggagc cttcacgccg
      961 atctcagcca gacctatggc tacaacaagg ccgatttccg ggtgttcgat accgccaatg
     1021 cgtcgctcgg cgccaacact cctacccgct tcgattcggg cggcgtcacc tatcagcaat
     1081 atgtgaccga ccttacgctc tcgctgccgc tcgatggcgt gctggcggga ggcaacatcg
     1141 ccgcgggagg ccagtaccgg cacgagagct atgcgatccg aaacggcgag ccgctcgcct
     1201 atttcggcac cggggcggac ggatttgccg gcttcaaccc gcgcaatccc actcatgccg
     1261 ggcgcaacgc ctatgccggg ttcctcgacg tcgagctgcg cccgatcgcg ccgctgctcc
     1321 tgggcggcgc gttgcgctac gaccattatg gagactttgg cgggcagacc acctggcgcg
     1381 cgaccgggcg gttcgacgcc gccccgggcg tggccctgcg cgcgaccttc ggcactggct
     1441 tcaaggcgcc ctcgctccag cagcaatatt acagcgcggt acaaggtgcg ctcagtgctg
     1501 gcgtgctcgt gaacgtcgcc actctcccag tttccgatcc catttcccgc gcgctcggcg
     1561 cagcaccgct caaacccgag cgctcgcgca acgccacggc cgggatcgta ttcgggccgt
     1621 tcgacggctt caccttcacc gccgactatt tcgacatccg catccgggac cgaatcgcgc
     1681 tgagcgaaca gctcggcggc gcggcggtga acgcgatcct aaaaggggca ggtatcaccg
     1741 gcttcagcca ggtgcgcttc ttcaccaatg ccgtcgatac caccacgcgg ggcgtggagg
     1801 tgacggggcg atggcaggga tcgctggggc cggacacgcg gctgagcgtg acggctggct
     1861 atagctggct agacaatcgc ctcaacacgc tgcgccccaa tccggtgctg ccgaacctgc
     1921 cgctgctcgc gaccaagtcg atcctgttcc tgaccgaagc gcagccgcgc gccaagggga
     1981 gtctccagct taacctcagc caccgccgct tcgatctcgg cgccagcttg acggcgttcg
     2041 gcacctacac atccgcaccg ctcgtccaag tccagacctt cggaggcaag gagtcgatcg
     2101 atctgtcggc cggctatgcc tttgccaaag gcttgcagct gcaactgggc gtccagaacc
     2161 tgctcgatgt ccggccggac ccgatcgccg atcagaacaa agcgatcgct gcgaccggcg
     2221 gcagcttccc aacgggcgag gagacgcctc tggggctgaa tggtcgcagc tactatgctc
     2281 gactatcggc gcgtttctga tgattaatcg gcgcacgctg ctcgcgagtg cagcagccct
     2341 cgccgccgct cggtttgccg atgccggcgc gagcgcacgg gttcgagaga gccggatacg
     2401 gttcgatcga tatccgttcg cactcggcgt cgcttcgggc gatccgagca cggacggatt
     2461 cgtgctgtgg acccgcattc ttggactgga ggaagacgcg gccgtcgcct gggaagtggc
     2521 ggagga
//
LOCUS       DASQVK010000281         2385 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_334566,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000281 DASQVK010000000
VERSION     DASQVK010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2385
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334566"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..208)
                     /locus_tag="VE567_05980"
     CDS             complement(<1..208)
                     /locus_tag="VE567_05980"
                     /inference="COORDINATES: protein motif:HMM:TIGR04433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UrcA family protein"
                     /protein_id="HYZ48427.1"
                     /translation="MLKPILISTLLLPLGVATVGASPVRAETVSKRISYADLDLSSEA
                     GRKRLQSRISWTVRGLCGSRDLSSD"
     gene            441..>2385
                     /locus_tag="VE567_05985"
     CDS             441..>2385
                     /locus_tag="VE567_05985"
                     /inference="COORDINATES: protein motif:HMM:NF015649.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BTAD domain-containing putative transcriptional
                     regulator"
                     /protein_id="HYZ48428.1"
                     /translation="MTPGAAQPIPEPEPVSVQLIGGFRLCEGGRDATPRGRKGRALLA
                     ALALSENGAASRDRLTALLWGDRAEEQARASLRQCLTELRGGLLGQRGLLTVGRDQVA
                     LALDAVGTDLASLLAAAASGNLKALLRHFSVGSIDLLSGLDGLSPGFDEWLLVERARR
                     RDMIVSAAIAAVAHALDRPDREPVAGLIAELERLEPGNEQVVRLGLRADRAAGDLGSL
                     HRRYQRLADVLRDEYGSAPSAETKRLFETLRSGSAAPAPATIVPPPVEPGDNEPPLLH
                     IGEFVDATQGAYAHLAVTLRQEILSGLSRFRDLRLAIERDVSDAGGYRLTATIRSSAS
                     GLVITPQLVRADGELVWADRLDQRLDDLQAGVDLLIARMVAAILPAVMTDVVATIAPR
                     PAGGLYGRYLLARYAALRPETHEAALAAARDLEAIVEADQNFVSPRLALARIYDTDFV
                     WTRANSSGPRERSRAFELSRQALGLDRDNVNAWTHMGWSHLWHRNWAASERALNAALT
                     LNPFNVARLLEVAVGRIYLGQFDGAAALVERSLAIEPRPGDDLHGDRGLLEFMRGNHD
                     AAAADFAMIVTPDLLHLVHAAANAARAGADSAFARERAQAALVPLFPDQRMPALDDLL
                     AWVDHVHPFRLDEHRRHLLDAVAL"
BASE COUNT          346 a          841 c          804 g          394 t
ORIGIN      
        1 gatcgctcga cagatcgcgg ctgccgcaga ggccgcgcac ggtccagctg atgcgggact
       61 ggagccgctt gcgcccggcc tcgctggaga ggtcgagatc ggcatagctg atgcgcttgg
      121 aaacggtttc cgcgcgcacc ggcgaggcac ccacggtggc aacgccgagc gggagcaaca
      181 gggtcgagat caggataggc ttcaacatgg cacttcctcc aggtcaaagc gatcgggtgc
      241 gggagtgccc cctctcgcat ccggatcggg tttcgctccg gacagctcct tctccccctt
      301 gcgcgtcaat tcgggcggga agcgaaagtg actcgagcgt caaaagttcg tgaaaaacga
      361 tgcgggtcga cgtgccgctt tcacgcggca tcgcagcatg gcataatcgc cgcctccgcc
      421 actcgaagga ggaggggctt ttgacgccgg gcgccgccca gccgatcccg gagccggagc
      481 cggtctcagt ccagctcatc ggcggcttcc gtctttgcga aggcggcagg gacgcgacgc
      541 cgcggggccg caagggccgg gcattgctcg ccgccctcgc cctttccgaa aacggcgccg
      601 ccagccgcga ccgcttgacc gcgctgctct ggggcgatcg ggcggaggaa caggcgcggg
      661 ccagcctccg ccaatgcctg accgagctac gcggcggctt gctcggccag cggggcctgc
      721 tcaccgtcgg acgcgaccag gtcgctttgg cgctggacgc ggtcggtacc gaccttgctt
      781 cgttgcttgc cgctgccgcg tcaggaaatc tgaaggcgtt gttgcggcat ttttcggtcg
      841 gcagcattga cctgctgagc ggccttgacg gactttctcc cggtttcgac gaatggctgc
      901 tggtcgagcg cgcacgccgg cgcgacatga ttgtctcggc cgccattgct gcggtcgcgc
      961 atgccttgga cagaccggat cgcgagccgg tcgcgggcct gatcgcggag ctggaacgtc
     1021 tcgagccggg caacgagcaa gtggtgcggc tgggcctcag ggccgaccgc gccgccggcg
     1081 acctgggcag cctgcatcgc cgttatcagc gcctggccga tgtcctgcgc gacgagtatg
     1141 gctcggcgcc ctcggccgaa acgaagcgcc tgttcgaaac cttgcgctcc ggctctgcgg
     1201 cgcccgcgcc ggccacgatc gtgccaccgc ccgtggagcc gggcgacaat gagccgccgc
     1261 tccttcacat cggcgagttc gtcgatgcga cccagggcgc ctatgcgcac ctggccgtta
     1321 cgctccgcca ggaaatcctc tccggcctct cccgcttccg agacctgcgg ctggccatcg
     1381 agcgcgatgt cagcgatgcc ggcggctatc ggctgaccgc gaccatccgc tcctccgcct
     1441 ccggcctcgt catcacgccg caattggtcc gcgccgacgg ggagctggtc tgggcggatc
     1501 ggctcgatca gcggctcgac gatctccagg ccggagtcga cctgctgatc gcgcgcatgg
     1561 tggcggcgat attgcccgcg gtgatgacgg atgtggtcgc cacgatcgcc ccgcgcccgg
     1621 ccggcggcct ctatggccgc tatctgctcg cccgctatgc cgcgctgcgc ccggaaacgc
     1681 acgaagcggc gctggcggcc gcgcgcgatc tcgaagcgat cgtcgaagcc gatcagaatt
     1741 tcgtatcgcc caggctggcg ctggcccgca tttacgacac cgactttgtc tggacgcgcg
     1801 ccaacagcag cggcccgcgc gaacggtcgc gcgcattcga gctgtcgcgc caggcgctcg
     1861 ggctggaccg cgataatgtg aacgcctgga cgcatatggg ctggagccat ttgtggcacc
     1921 gcaattgggc ggcgagcgaa cgggcgctga acgcggcgct gacgctcaat cccttcaacg
     1981 ttgcccggct gctcgaagta gcggtcggac gcatctatct cggccagttt gacggcgccg
     2041 ctgcgctggt cgagcgcagc cttgcgatcg agccgcggcc gggcgacgat ctccacggcg
     2101 atcgcggcct gctcgagttc atgcggggca atcacgacgc agccgccgcc gatttcgcga
     2161 tgatcgtcac gcccgacctg ctgcacctcg ttcacgctgc cgccaacgcg gcccgcgcgg
     2221 gcgccgactc ggcctttgcg cgcgagcgtg cgcaagcggc gctcgtgccg ctgttcccgg
     2281 accagcgcat gccggcgctc gatgacctcc tcgcctgggt cgatcacgtc cacccgttcc
     2341 gcctcgacga gcatcgccgc cacttgctcg acgccgtcgc cctcg
//
LOCUS       DASQVK010000282         2435 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_365827,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000282 DASQVK010000000
VERSION     DASQVK010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2435)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2435
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365827"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            8..97
                     /locus_tag="VE567_05990"
     tRNA            8..97
                     /locus_tag="VE567_05990"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:42..44,aa:Ser,seq:cga)
     gene            complement(187..648)
                     /gene="crcB"
                     /locus_tag="VE567_05995"
     CDS             complement(187..648)
                     /gene="crcB"
                     /locus_tag="VE567_05995"
                     /inference="COORDINATES: protein motif:HMM:NF010802.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HYZ48429.1"
                     /translation="MPDFCLGRLGAGDGVMKPGAITYIWIGLGSALGGVARFGCGQWA
                     EQAWDTSFPWGTLLVNVTGSLLIGLLAVLSGPDGRLRVGPNVRQFAMTGFCGGFTTFS
                     AFSLQTLELIERQALDAAAINIVASSALCLLSVWVGASAASLLNRWLLAKA"
     gene            complement(600..980)
                     /gene="crcB"
                     /locus_tag="VE567_06000"
     CDS             complement(600..980)
                     /gene="crcB"
                     /locus_tag="VE567_06000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HYZ48430.1"
                     /translation="MANIASYMWIALGSALGGMGRYACSRAIAARFGDQFPWGTLAVN
                     VAGSFLIGGFAALAGPMSVAPDLRLFVTAGICGGFTTFSSFSLQTLDLIRRRAFAAAM
                     GNMVLSVLLCLISVWAGSALATAS"
     gene            complement(991..1965)
                     /locus_tag="VE567_06005"
     CDS             complement(991..1965)
                     /locus_tag="VE567_06005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015456859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone oxidoreductase"
                     /protein_id="HYZ48431.1"
                     /translation="MARVARIERTGGPEVIAWADVDLPPPGPGEVRMRNTAVGLNFID
                     VYHRSGLYPVELPTGLGVEAAGVVEAVGEGVSEWQPGDRVCTFGPVRGAYATARNLPA
                     SALLPIPDGISDEVAAASLLKGCTAEFLAERCGRVEPGWTVLVHAAAGGVGLILVQWL
                     KALGARVIGTVSNEEKAGQARAAGADEIVLSTREDIAARVRELTGGAGVPVVFDGVGK
                     DTWEKSLGAAKRRGLIVSYGNASGPVSNVNLGVLSQKGSLFVTRPTLFDYYADPAERR
                     AGAERLWEMIRSGKVRITIGRRYPLEQAAEAHRDLEARKTTGSTALIP"
     gene            complement(1973..>2435)
                     /locus_tag="VE567_06010"
     CDS             complement(1973..>2435)
                     /locus_tag="VE567_06010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HYZ48432.1"
                     /translation="GGPVFDPLSATETAAAVTLTDLLAPTRLNRLEIQNQADPASPSA
                     HDVIDRLIDRSFAVPRDASAAAVQRRIATTVALALARAQRDGALSPTIALALSERLNR
                     LATGLAKTGGSGVQADWSRGLGRLLLDREALTAALADPRRLPKIPPGMPIG"
BASE COUNT          416 a          893 c          784 g          342 t
ORIGIN      
        1 cgagcgcgga gaggtgcagg agtggttgaa ctggcttgtc tcgaaaacaa gtgtgccggc
       61 aacggtaccg agggttcgaa tccctccctc tccgccacct gatccaacag ctttgctcct
      121 gttcgcgaga aggtgcgcgc gtgtcaggcg ccaatggcgt accaggaaat ggagcctgtc
      181 tggccgctag gccttggcga gtagccatcg attgagcagg ctcgcggcac ttgccccgac
      241 ccacacggag agcagacaga gcgcggacga cgcgacgatg ttgatcgccg ccgcgtcgag
      301 cgcctgacgc tcgatcagct ccagcgtctg cagcgagaag gccgaaaagg tcgtgaagcc
      361 gccgcagaag ccggtcatcg cgaactggcg gacattgggc ccgacccgca gccggccgtc
      421 gggcccgctc agtacggcaa gcaagccgat cagcagcgag cccgtgacgt tcaccagcaa
      481 agtgccccag gggaagctcg tgtcccaggc ctgctcggcc cattgtccgc agccaaagcg
      541 tgcgacgccg cccagcgcgc tgcccagacc gatccagata taggtgatcg cgcccggctt
      601 catgacgccg tcgccagcgc cgagccggcc cagacagaaa tcaggcataa taggaccgac
      661 agcaccatgt ttcccatggc cgcggcgaag gcgcgacgcc gaatgaggtc aagcgtctgc
      721 aggctgaacg aggaaaaggt cgtgaacccg ccgcaaatgc cagccgtcac gaacagccgg
      781 agatcgggcg cgacgctcat cggtccagcg agcgccgcga agccgccgat caggaacgag
      841 ccggcgacgt tgaccgccaa ggttccccac gggaattggt cgccgaaccg cgccgcaatc
      901 gcgcgcgaac aggcatagcg gcccatgccg cccagcgcgc tgccgagcgc gatccacata
      961 tagctggcga tgttggccac gcgggaagag tcaggggatc aacgccgtcg accccgtcgt
     1021 cttgcgcgct tcgaggtcgc ggtgcgcctc ggccgcctgt tcgaggggat agcgtcggcc
     1081 gatcgtgatc ctgaccttgc ccgatcggat catctcccac agccgctccg cgcccgcgcg
     1141 gcgctcggcc ggatcggcat aatagtcgaa cagggtcggc cgggtaacga acagcgagcc
     1201 cttctgcgat agcacgccca gattgacgtt gctgaccggc ccgctcgcat tgccgtagct
     1261 gacgatcagc ccccgccgct ttgcggcgcc gagcgacttt tcccatgtgt ccttgccgac
     1321 gccgtcgaag acgaccggca cgcccgcgcc gcccgttagc tcgcgcacgc gcgcggcaat
     1381 atcctcccgc gtcgaaagga cgatctcgtc cgcccccgcc gcgcgcgcct gcccggcctt
     1441 ctcctcgttc gaaaccgtgc cgatcacgcg tgcgcccaat gccttcagcc attggacgag
     1501 gatcagcccg actccgcccg cggcggcgtg caccagcacc gtccagcccg gctcgacgcg
     1561 gccgcagcgt tcagccagga attcggccgt gcagcccttg agcagcgaag cggccgcgac
     1621 ttcgtccgaa atgccgtccg ggatcggcag cagcgcggag gcgggcaggt ttcgcgcggt
     1681 cgcataggcg ccccgcacgg gcccgaaagt gcagacccgg tcgccgggct gccactcgct
     1741 cacaccctcg ccgaccgcct cgaccacgcc cgccgcttcc acgccaaggc ccgtcggcag
     1801 ctcgaccgga tacaggccgc tgcggtgata gacatcgatg aaattgagtc cgaccgcggt
     1861 gttccgcatc cgcacttcgc cgggccccgg cggcggcagg tcgacatccg cccacgcgat
     1921 aacttcggga ccgccggtcc gctcgatccg tgccacgcgt gccatgttca cctcatccaa
     1981 tgggcatgcc cggcggtatc ttgggcagcc ggcgcggatc ggcaagagcc gcggtcagcg
     2041 cctcgcggtc gagcagcagc cgcccgagcc cgcggctcca atcggcctgc accccgctcc
     2101 cacccgtttt ggcgagcccg gtcgccagcc ggttcagccg ctccgaaagc gccagcgcga
     2161 tcgtgggcga cagcgccccg tcccgctgcg cccgcgcgag cgccagcgcg accgtcgtcg
     2221 cgatccgccg ttgcaccgcg gctgccgacg cgtcgcgcgg caccgcgaag ctgcgatcga
     2281 tcagccggtc gatcacgtca tgcgcagagg ggctcgccgg atccgcctgg ttctggattt
     2341 cgagccggtt aagccgcgtc ggcgccagca ggtccgtgag cgtcaccgcc gccgccgtct
     2401 ccgtcgcgga aagcggatcg aaaaccggcc cgccc
//
LOCUS       DASQVK010000283         3334 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_460923,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000283 DASQVK010000000
VERSION     DASQVK010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3334)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3334
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_460923"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2658
                     /locus_tag="VE567_06015"
     CDS             <1..2658
                     /locus_tag="VE567_06015"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008773 - [protein-PII]
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="[protein-PII] uridylyltransferase"
                     /protein_id="HYZ48433.1"
                     /translation="PALRAQAVALLKDALDKGRHEISDRLTLNPSRGLEAAGAQAFLI
                     DQIVRLTFDFTTQRLYPVSNPTAGERIAILGVGGYGRGEMAPYSDVDIMFLTPWKQTG
                     WAEQVIESMLYSLWDLGLKVGHSSRSLDDMVRMARSDLTVRTALLEGRFVWGDAALND
                     EGAARFRKEVVAGTDRAFVAAKLEERNERHRRMGDSRYVVEPNVKEGKGALRDLHTLF
                     WIGKYVHRVDSVEGLVEAGLLTRDELHQFRRAENFLWAVRCHLHMIAGRAEERLTFDY
                     QREIAQRMHYANRPGKSAVERFMHYYFLQAKTVGDLTGLFLAHLDEQFASPGRRFTLA
                     AIPRRPRKLNGFKLVRGRLALPADDFLEEDPVRLIEMFALADKHGLELHPSAVRCARR
                     DARLIDAKVRRDPRANALFLDVLTSPRDPETVLRWMNEAGVFGRFVPDFGRVVAQTQF
                     DMYHHYTVDEHTIRALGLLAQIERGDLKDEHPIATALFPQIVSRRVLYVAVLLHDIAK
                     GRGGDHSVLGAEIALELCPRLGLTAAETETVAWLVRYHLLMSATAFKRDLSDFKTILD
                     FAEAVQSPERLKLLLVLTIVDIRAVGPGVWNGWKRQLLGGLFDAAEEVLRLGHKQTGR
                     KERVEAKQRELAARLNWEPARFEGYARRLPEPYWVAEPLEVLEANAHHVAAAGEDGLS
                     IAAEADRERGATLVTVYASDHPGLFYRIAGAIHLAGGSIIDARIHTTRDGMALDNFLV
                     QDPFGRPFDENGRLERLKAGIADALISRARLTERLAAKPLPRPRADAFPIAPNVLIDN
                     RASNRFTVIEVNARDRPALLYALAYALFQSKVTIHSAHIATYGERAVDTFYVTDLLGA
                     KITLPSRLRSLEKRMLEAAEGSTPAKAAA"
     gene            complement(2695..>3334)
                     /locus_tag="VE567_06020"
     CDS             complement(2695..>3334)
                     /locus_tag="VE567_06020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003041634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYZ48434.1"
                     /translation="KSAVLPNFNAAAATTGTCPASKVGPGVLSTGVEIESSLRPANDV
                     SIGLGLTVANTRYRNNLVGNSSGVALDPALRMLPGHKLSNAPAAVATGSFTWTPPIGD
                     TGLTGLLYVDGRVTSDYNTGSDLFPQKRQDGYAIVNGRIGIRGPRELWAVEVWAQNLF
                     NQNYTQVAFNSPFQEGRTAAPFNTADYPGGAQTFSAFLAEPRTYGVTLRTRF"
BASE COUNT          557 a         1122 c         1103 g          552 t
ORIGIN      
        1 ccggcgctca gggcgcaggc agtggcgctg ctcaaggacg cgctcgacaa agggcggcat
       61 gagatttccg accggctgac gctcaatcct tcgcgcgggc tggaagcggc gggcgcgcag
      121 gcattcctga tcgaccagat cgtgcgcctc accttcgatt tcacgacgca gcggctgtac
      181 ccggtcagca acccgacggc gggcgagcgg atcgcgatcc tgggcgtcgg cggctatggg
      241 cgcggcgaga tggcgcctta ttcggacgtc gacatcatgt tcctcacccc gtggaagcag
      301 accggctggg cggagcaagt gatcgaatcg atgctctact cgctttggga cctggggttg
      361 aaagtggggc attcgagccg ctcgctcgac gatatggtgc ggatggcgag aagcgacctg
      421 accgtgcgca cggcgctttt ggaagggcgg ttcgtctggg gcgacgccgc gctcaacgac
      481 gaaggcgccg cccgcttccg caaggaagtg gtcgcaggga ccgaccgcgc gttcgtcgcg
      541 gccaagcttg aggaacgcaa cgagcggcat cggcggatgg gcgacagccg ctatgtcgtc
      601 gagcccaatg tgaaggaagg caagggggcg ctacgcgacc tccacaccct cttctggatc
      661 ggcaaatatg tgcaccgcgt cgattcggtc gaagggctgg tcgaggccgg gctgctgacg
      721 cgcgacgagc tgcaccaatt caggcgcgcc gagaattttc tttgggccgt gcgctgccat
      781 ctccacatga tcgccggccg cgccgaggag cggctgacct tcgactatca gcgcgagatc
      841 gcccagcgga tgcactacgc caaccgcccc ggcaaatccg cggtcgagcg gttcatgcat
      901 tactatttcc tgcaggcgaa gacggtcggc gacctgaccg gcctgttcct ggcccatttg
      961 gacgagcaat ttgccagccc gggccggcgc ttcaccctgg ctgcgattcc gcgccgccca
     1021 cgcaagctca acggtttcaa gctggtgcgc gggcggctcg cgctcccggc cgacgatttc
     1081 ctggaagagg atccggtgcg gctgatcgag atgttcgcac tcgccgataa gcatgggctg
     1141 gagctgcatc caagcgccgt ccgctgcgcc cggcgcgacg cgcggctgat cgacgccaag
     1201 gtccgccgcg atccgcgcgc caatgcactg ttcctcgacg tgctgacgtc cccgcgcgat
     1261 cccgaaaccg tgctccgctg gatgaacgaa gcgggcgtgt tcggccgctt cgtgcccgat
     1321 ttcggccggg tcgtcgccca gacccagttc gacatgtatc atcattatac cgtcgacgag
     1381 cacacgatcc gcgcgctcgg cctgctcgcg cagatcgagc gcggcgacct gaaggacgag
     1441 catccgatcg ccacggcgct cttcccccag atcgtctcgc gccgggtgct ctatgtcgcc
     1501 gtgctgctgc acgacatcgc caaggggcgc ggcggcgacc atagcgtgct cggcgccgag
     1561 atcgcgctgg agctctgccc gcgcctaggg ctgaccgctg ccgagaccga gactgtggcg
     1621 tggctggtgc gttaccacct gctgatgtcg gcgaccgcgt tcaagcgtga cctgagcgac
     1681 ttcaagacga tcctggattt tgccgaagcc gtgcagagcc ccgagcggct gaagctgctg
     1741 ctcgtcctca ccatcgtcga tatccgcgcc gtcgggccgg gggtgtggaa cggctggaag
     1801 cggcaattgc tcggaggcct gttcgacgcg gcggaggaag tgctgcgcct cggccacaag
     1861 caaaccgggc gcaaggagcg cgtcgaggcg aagcagcgcg agctcgccgc ccgtctcaac
     1921 tgggagccgg cgcgcttcga gggctatgcg cgccgactgc ccgagcccta ttgggtagcc
     1981 gagccgctgg aggtgctgga ggccaatgcc caccatgtcg ccgcggccgg cgaggacggg
     2041 ctttcgattg cggccgaagc cgatcgcgag cgcggggcga ccctcgtcac tgtctatgcc
     2101 agcgaccatc ccggcctttt ctaccgcatt gccggcgcga tccacctcgc agggggcagt
     2161 atcatcgacg cgcgcatcca cacgacgcgc gacggcatgg cgctcgacaa tttcctagtg
     2221 caggacccgt tcggtcgccc gttcgatgaa aacggccggc tggagcggct gaaggccggc
     2281 atcgccgacg cgctgatcag ccgcgcgcgc ctgaccgaac ggctcgcggc caagccgctg
     2341 ccgcgcccgc gcgccgacgc gttcccgatc gcgcccaatg tgctgatcga caatcgcgcc
     2401 tcgaaccgct tcaccgtcat cgaagtcaat gcgcgcgacc ggccggccct gctctatgcg
     2461 ctcgcctatg cgctgttcca gtcgaaggtc acgatccatt ccgcccacat cgccacctat
     2521 ggcgagcgcg cggtcgacac attctacgtg accgacctgc tcggcgcgaa gattaccttg
     2581 ccttcacgcc tgaggagcct ggaaaagcgc atgctcgaag cggccgaagg aagtacgcca
     2641 gccaaggcgg cggcctgacc tcccctccct gtttagggag gggaaattag ccggtcagaa
     2701 ccgcgtccgg agcgtcacgc cataggtgcg cggctcggcg aggaaggccg agaaggtctg
     2761 cgccccgccc ggatagtcgg ccgtattgaa cggcgctgcc gtccgcccct cctggaacgg
     2821 ggagttgaac gcgacctggg tgtaattctg gttgaagagg ttctgcgccc agacttccac
     2881 cgcccacagc tcgcgcggcc cgcgaatgcc gatgcggccg ttcacgatcg catagccatc
     2941 ctgccgcttc tgcgggaaca ggtccgaccc ggtgttatag tcgctcgtca cgcgcccatc
     3001 gacgtagagc agccccgtaa gcccggtgtc gccgatcggt ggagtccagg tgaaggatcc
     3061 ggtcgccacc gctgccggcg cgttcgacaa tttgtgcccg ggcagcatgc gcagcgccgg
     3121 atcaagcgcg acgccgctgg agttccccac gagattgttg cgatagcgcg tgttggccac
     3181 ggtcagaccc aggccgatcg acacatcgtt ggccggacgg agcgagcttt cgatctcaac
     3241 cccggtcgac aagacccctg gccccacttt gctggccggg cacgtaccgg tcgttgccgc
     3301 cgcggcattg aaattcggga gcaccgccga cttg
//
LOCUS       DASQVK010000284         4536 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_434762,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000284 DASQVK010000000
VERSION     DASQVK010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4536
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_434762"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..833
                     /locus_tag="VE567_06025"
     CDS             <1..833
                     /locus_tag="VE567_06025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0042398 - cellular modified amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glutamate-cysteine ligase family protein"
                     /protein_id="HYZ48435.1"
                     /translation="QTNLDYANEADMVKKFRVSLALQPLATALFANSPFTEGKPNGFL
                     SYRSHIWSDTDPARTGMLPFVFEDGFGYERYAEYALDVPMYFVFRDGRYIDAAGQSFR
                     DFLKGELPALPGEKPRLSDWSDHLSTAFPEVRLKTFLEMRGADGGRWSRICALPAFWV
                     GLLYDGAALDAAWDVVKDWSMEAREALRNDVPKLGLEAPIPGGGKLLDIAGEVLEISA
                     SGLRARAALDASGSSEVGFLEPLQEVVRIGKPPAQRLLDLYNGPWGGNLARIYDEFSF
                     "
     gene            complement(846..2993)
                     /locus_tag="VE567_06030"
     CDS             complement(846..2993)
                     /locus_tag="VE567_06030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010215509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0017000 - antibiotic biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HYZ48436.1"
                     /translation="MLTLAFLLAAASPLSAELARWRAAAARVTIVRDDWGVAHVKGQN
                     DADAVFGAIYAQAEDDFPRIERNYLTALGRQAEADGEGAIWDDLRHRLYLDEADLRAA
                     WARSPAPMQRLMTAWADGLNYFLATHPRVKPKVLTRFEPWMALSFTEGSIGGDIERID
                     LDQLRAFYSGKPPAIVAAPGLMSEPMGSNGIAIGPAKSESGHALLLINPHTSFYFRSE
                     LQMTSGEGLNAYGAATWGQFFIYQGFSDKIGWMHTSSSADNVDEFAETIVKGPKGLSY
                     RYGTETRPLGTRLVQVRFRKADGTLAARSFTTWRTHHGPIVRAERGKWIATALMNKPV
                     EALQQSWLRTKATDLASFQKIADVFRANSSNNTVFASAKGEIAFLYPQFMPRRNGRFD
                     YTQPVDGGDPATDWRGLIPVAQLPQAVNPAAGWVQNTNTWPWSAAGPGSIRPEAFPRY
                     IEAGHENPRGEHALMLLQGTKSFTRDSLLKTAFDPYLPPFAKAVPALATAYDALPAAD
                     RLKAKLAGPIAAMRSWDFKWSVGSEPTTLAIFWATEMDRAAPAQVRQQRRVADWMASA
                     PAATQLAALASAVDRLERDFGRWRIAWGEVNRFQRLTADIKSRFDDAAPSTPIGFVSG
                     NWGSLAAFGSQPYPNTKRWYGNYGNSFVAVVEFGARVRARAVTAGGASGDPASPHFRD
                     QADRYATGDFREVYFYPDQLKDHIERVYRPGEQ"
     gene            complement(3050..4393)
                     /locus_tag="VE567_06035"
     CDS             complement(3050..4393)
                     /locus_tag="VE567_06035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYZ48437.1"
                     /translation="MKRLWPKSLGAQLALLVALALGVAQAVNFVLLLQATRRQSYVQT
                     STLAIARLAETVQRIRSGGATPAMLRGSLATSATPVTPQMPLRPDIADRAREMLEEVG
                     IGVGQIRAAEVPAREFQVQVDEQGRLLRRSAVARRQVLVVSAEIGPARWVTTAAALPP
                     LHPGAFGALIFQTMVLYGFVLLAVLWVGGRLARPLAELRQAAERFDRRTALEPIEEQG
                     PADIRRLIAAFNAMRTRITAMLDEKDRMLGAIGHDLRTPLASLRVRTELVEDDGERAR
                     MAATIDDINKTLDDILSLARLGRPSEPEQRVDLPALVDSLAEEFEDLGADIVVEDADR
                     LAVPMRPNLIKRALRNLIENSIKYGCSARIRVRAEPRAALVEIDDHGPGIPEEEMERM
                     FEAFTRLEESRSRDTGGSGLGLALARAIIEAHGGALALANREEGGLRATVRLPLA"
     gene            complement(4390..>4536)
                     /locus_tag="VE567_06040"
     CDS             complement(4390..>4536)
                     /locus_tag="VE567_06040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017183967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HYZ48438.1"
                     /translation="REAHAFDRAIDNHISRLRRKIEGDPKNPVLIKTVWGGGYTLAAD
                     VTRL"
BASE COUNT          737 a         1487 c         1525 g          787 t
ORIGIN      
        1 tccagaccaa cctcgattat gcgaacgagg cggacatggt gaagaagttc cgcgtcagcc
       61 tcgcactcca gccgctagcg accgcactgt tcgccaattc gcccttcacc gagggcaagc
      121 ccaacggctt cctttcctat cgcagccata tctggtcgga cacggatccg gcgcgcaccg
      181 gcatgctacc cttcgtattc gaggacggct tcggctatga gcgctatgcg gaatacgcgc
      241 tcgacgtgcc gatgtatttc gtgttccgcg acggccgata tatcgacgcg gccgggcaga
      301 gcttccgcga cttcctgaaa ggcgagctgc ccgcgcttcc gggcgagaag ccgcgccttt
      361 ccgattggtc ggaccacctc tcgaccgcct ttcctgaagt gcgtttgaag accttcctcg
      421 aaatgcgcgg cgccgatggc gggcggtgga gccgcatttg cgccctgccg gcgttctggg
      481 tcgggctgct ctacgacggc gcggcgctcg atgcggcctg ggatgtggtg aaggactggt
      541 cgatggaagc acgcgaagcg ctccgcaatg acgtccccaa gctcggcctg gaggcgccga
      601 ttccgggcgg cggcaagctg ctcgacatcg ctggcgaggt gcttgagata tccgcctcgg
      661 gcctccgcgc ccgcgccgcc ctcgacgcct ctggcagcag tgaagtcggc tttttggagc
      721 cgctccagga agtcgtccgc atcggcaagc cgccggccca acgcctgctc gacctctaca
      781 atggcccttg gggtggcaat ctcgctcgaa tctacgacga gttcagtttt tgacgccgaa
      841 tggcgttatt gttcacccgg ccgatacacc cgctcgatat ggtccttgag ctggtccggg
      901 tagaaataga cctcgcggaa atcgcccgtc gcatagcggt cggcctggtc gcggaaatgg
      961 ggtgaggcgg ggtcgccgct cgccccgccg gcggtgactg cgcgggcgcg gacccgggcc
     1021 ccgaattcca cgaccgccac gaagctgttg ccgtaattgc cataccagcg cttcgtgttc
     1081 ggatagggtt gggagccgaa ggcggcaagc gagccccaat tgcccgagac gaagccgatc
     1141 ggggtgctcg gcgccgcatc gtcgaagcgg gacttgatgt cggcggtgag gcgctggaaa
     1201 cgattcactt caccccaggc gatgcgccag cgcccgaaat cgcgctccag ccggtcgacg
     1261 gcgctcgcaa gagctgcaag ctgggttgca gcgggcgcgc tcgccatcca atcggccacc
     1321 cgcctctgtt ggcgaacctg ggcgggggcg gcgcgatcca tctcggtcgc ccagaaaatc
     1381 gcaagcgtcg tcggctccga tccgacgctc catttgaaat cccagctccg catcgccgcg
     1441 atcgggccgg caagcttcgc cttcagccga tcggcagccg gcagcgcgtc ataggccgta
     1501 gcgagcgccg gcacggcctt ggcgaacggc gggagatagg ggtcgaacgc tgtcttcagc
     1561 agcgagtcgc gagtgaagct cttcgttcct tgaagcagca tcagcgcatg ctcgccgcga
     1621 ggattctcgt ggccggcttc gatgtagcgc gggaaggcct cgggacggat gctgcccggc
     1681 ccggcggcag accagggcca tgtgttcgtg ttctggaccc agcccgccgc gggattcact
     1741 gcctggggca gttgggcgac ggggatcagc ccgcgccaat cggttgccgg atcgccgccg
     1801 tccaccggct gggtgtaatc gaagcggccg ttccgccgcg gcatgaattg gggatagagg
     1861 aacgcgatct cgcctttcgc gctcgcgaac accgtgttgt tcgacgagtt ggcgcggaaa
     1921 acgtcggcaa tcttttgaaa cgaggcgagg tctgtcgcct tggtcctgag ccagctttgc
     1981 tggagcgcct ctaccggctt gttcatcagg gcggtggcga tccattttcc gcgctcggcc
     2041 cgcacgatgg ggccatggtg cgtgcgccaa gtcgtgaagc tgcgcgctgc aagcgtgccg
     2101 tccgccttgc ggaagcggac ctgcaccagc cgcgtgccga gcggccgcgt ctcggttcca
     2161 taacgatagc ttaggccctt cggccctttc acgattgtct cggcgaactc gtcgacattg
     2221 tcggcgctgc tcgacgtgtg catccagccg attttgtcgc tgaagccctg atagatgaag
     2281 aattggcccc aggtggccgc gccataggcg tttagccctt cgccgctcgt catctgcagt
     2341 tccgagcgga aatagaagct ggtgtgcggg ttgatgagca gcagcgcatg gccgctttca
     2401 cttttggcgg ggccgatcgc aatgccgttg gatcccatcg gctcgctcat cagccccggc
     2461 gccgcgacga tcgcaggcgg cttgcccgaa tagaaggcgc ggagctggtc gaggtcgatg
     2521 cgctcgatat cgcccccgat gctgccttcg gtgaaggaca gcgccatcca aggctcgaag
     2581 cgcgtgagca ccttgggctt cacccggggg tgggtcgcga gaaaataatt cagcccatcg
     2641 gcccaggcgg tcatcagccg ctgcatcggc gccgggctgc gcgcccaggc ggcgcgaaga
     2701 tcggcttcgt caagatagag gcggtggcgg agatcgtccc agatcgcgcc ttcgccgtcc
     2761 gcctctgcct gccggccaag cgcggtcagg taattgcgct cgatccgcgg aaaatcgtct
     2821 tcggcctgag cgtagatcgc gccgaacacg gcatccgcat cgttctgtcc tttgacatgg
     2881 gcgacgcccc aatcgtcgcg cacgatcgtc actcgcgccg ccgcggcgcg ccagcgggca
     2941 agctctgccg agagaggcga tgcggcggcg aggaggaagg cgagggtgag cataggaaga
     3001 cggttaggcc aggcacatgc gattggaaaa ggcttgaaaa aggagagaat caggccaagg
     3061 gcagccgcac tgtcgcccta aggccgcctt cctcccgatt cgcgagcgcg agcgcgccgc
     3121 catgggcctc gatgatcgcg cgggcgaggg cgaggccgag gccgctgccg ccggtgtcgc
     3181 ggctgcgcga ttcttcgaga cgggtgaaag cctcgaacat ccgctccatc tcctcttcgg
     3241 ggatgccggg gccgtgatcg tcgatttcga ccagcgccgc gcgaggttcg gcgcgcacgc
     3301 ggatgcgcgc cgagcagcca tatttgatcg aattctcgat caggttgcgc agcgcgcgct
     3361 tgatgagatt ggggcgcatc ggcactgcca gccggtcggc atcctcgacc actatgtcgg
     3421 caccgagatc ctcgaactcc tcggccaggc tgtcgacgag cgccggcagg tcgacgcgtt
     3481 gctcgggctc gctcgggcgg ccgagccgcg ccagcgagag gatgtcgtcg agagttttgt
     3541 ttatgtcgtc gatcgtggcg gccatccgcg cgcgctcgcc gtcatcctcg acgagctcgg
     3601 tgcggacgcg aagcgaggcg aggggcgtgc gcagatcgtg cccgatcgcg cccagcatcc
     3661 ggtccttttc gtcgagcatc gcggtgatgc gggtgcgcat cgcgttgaag gcagcaataa
     3721 gccggcgaat atcggccggg ccctgttcct cgatgggctc aagagcagtc cggcggtcga
     3781 agcgctcggc cgcctggcgc agctcggcga gcgggcgcgc gagccggccc ccgacccaca
     3841 gcaccgccag cagcacgaag ccgtagagca ccatcgtctg gaaaatcagc gctccgaagg
     3901 cgccgggatg gagcggcggc agtgccgcgg cggtcgtgac ccagcgcgcc ggcccgattt
     3961 cggcagacac cacaagcact tgtcgtcggg cgaccgccga gcgcctgagt agccgccctt
     4021 gctcgtccac ctgcacctgg aactctcgcg ccggtacttc ggcggcccga atctgaccga
     4081 cgccgatccc gacctcctcc agcatttcgc gcgcgcggtc ggcaatgtcg gggcgcagcg
     4141 gcatttgcgg cgttaccggg gtcgcgctgg tggcgagcga gccgcgcagc atcgccggcg
     4201 tggcgccgcc ggagcggatg cgctgcacgg tctcggccag ccgggcgatc gccaaggtgg
     4261 aggtttgcac atagctttgc cgccgcgtcg cctggagcag cagcacgaaa ttgaccgcct
     4321 gcgccacgcc caatgccagc gcaaccagca gcgccagctg tgcgcccagg cttttgggcc
     4381 acagccgctt caaagccgcg tcacatcggc ggccagcgta tagccgccgc cccacacggt
     4441 cttgatcagc acgggattct tcgggtcccc ctcgatcttg cggcgcaagc ggctgatatg
     4501 attgtcgatc gcgcgatcga acgcatgcgc ttcgcg
//
LOCUS       DASQVK010000285         2464 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_434797,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000285 DASQVK010000000
VERSION     DASQVK010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2464)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2464)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2464
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_434797"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..402
                     /locus_tag="VE567_06045"
     CDS             <1..402
                     /locus_tag="VE567_06045"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017503069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
                     /protein_id="HYZ48439.1"
                     /translation="DIWTSDADALASIANYFVDAGWRAGRPWGVPASAPPFLDRAAIA
                     GKIVSPRCPRVYERHSKWLTVAEWRNRGVVQTGGPRLRDAELVTLLEPDGPGAQAYLL
                     TGNYRVILDYNCSNFYALSVGLLANAVAQPS"
     gene            411..1574
                     /locus_tag="VE567_06050"
     CDS             411..1574
                     /locus_tag="VE567_06050"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007404423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase family
                     protein"
                     /protein_id="HYZ48440.1"
                     /translation="MKIYFFGSLSLIALAAPTSAAAPPFDTPAPVAYMVDLSSGAVLY
                     ARDADRRMPPASMAKMMTVYVAFDMIKKGELKPSTMFTVRPETWQKWHGPAAGSTMFL
                     SANEQVSVENLLYGIVTLSGNDACVVLAEGIAGTEDAFVQRMNDAAKRIGMTNSHFGN
                     SNGWPDEGRTYVTARDLGKLASATISEFPDLYKQYYSKPDFTWGKTMGGEAITQANRD
                     PLLGRVAGADGLKTGHTDEAGYGFTGSAEQNGRRLVMVLSGLTSFNQRIAESVRFMEW
                     GFKAWQAKPLFKQGAHVEAADVQLGDAKQVGLIAPRNLAVTLPAGSASNVQVKVVYDG
                     PIKAPVKKGQHIADLVVTTPDTPPQTMPLVAENDVGRAGFFGRVWAALLSFFA"
     gene            1571..2197
                     /gene="tmk"
                     /locus_tag="VE567_06055"
     CDS             1571..2197
                     /gene="tmk"
                     /locus_tag="VE567_06055"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007689137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HYZ48441.1"
                     /translation="MRARFISLEGGEGVGKSTQARRLAEAMRARGIEVLLTREPGGSP
                     GAEAIRQLLLEGEPNRWSPGAEALLFAAARADHVVKTIEPALEAGQWVICDRFIDSSR
                     AYQGIAGGVGDAAIQNLHQIGSDGLMPDRTLVLALTKADAAARAHARDGGRPDRIGGR
                     EAEFHAQVAQAFSDFARDDPERIRLVEASGSEEEVTARLLAALEDLLP"
     gene            2194..>2464
                     /locus_tag="VE567_06060"
     CDS             2194..>2464
                     /locus_tag="VE567_06060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013846676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HYZ48442.1"
                     /translation="MTSLLGHDAQAAAFLSAMRAARLHHAWLLTGPRGVGKASFAKAA
                     ALRLLTEAAGPAPSGTGLEVDPEHRIARLFAAGSHPDFRLVERVPW"
BASE COUNT          412 a          800 c          821 g          431 t
ORIGIN      
        1 gacatctgga cgtccgatgc cgatgcgctc gcctcgatcg caaactactt tgtcgatgcc
       61 ggctggcggg cgggccgacc ctggggcgtc cccgccagcg cgccgccgtt tctcgaccgc
      121 gccgccattg cgggcaagat cgtctcgccg cgctgcccgc gcgtgtatga gcggcacagc
      181 aaatggctga ccgtcgccga atggcgcaat cgaggggtcg tgcagaccgg cggaccacgg
      241 ctccgggatg cggagcttgt cacgctgctg gagccggacg gccctggtgc gcaggcctat
      301 ctgctcaccg gcaattatcg ggtgatcctc gattacaatt gttcgaattt ctatgcgctt
      361 tcggtagggc tgcttgccaa cgccgtcgca caaccctcgt gagtcgctga atgaagatct
      421 attttttcgg ttcgctttcc ctcattgcac tcgctgcgcc cacttccgct gcggcgccgc
      481 cgttcgatac gccggcgccg gtcgcctata tggtcgactt gagttccggc gcggtactct
      541 atgccaggga tgccgaccgg cgcatgccgc ctgcctcgat ggcgaagatg atgaccgtct
      601 atgtcgcctt cgacatgatc aagaagggcg aactcaagcc ctcgaccatg ttcaccgtgc
      661 ggccggagac ctggcagaaa tggcatgggc ccgccgcagg ctccaccatg ttcctgtcgg
      721 cgaacgagca ggtcagcgtc gaaaacctgc tctatggcat cgtcacgctg tccgggaacg
      781 acgcatgcgt cgtgctcgcg gaagggattg cgggcaccga agacgctttc gtccagcgga
      841 tgaacgacgc tgccaagcgg atcggcatga ccaacagcca tttcggtaat tcgaatggct
      901 ggccggatga aggccgcact tatgtgacgg cgcgcgacct cggcaagctc gcctccgcga
      961 cgatcagcga gttcccggat ctctacaagc aatattatag caagcccgat ttcacctggg
     1021 gcaagacgat gggcggcgag gccatcaccc aggcgaaccg tgacccgctg ctcggccgcg
     1081 tggcgggcgc ggacgggctg aagaccggcc ataccgacga ggcgggctac ggcttcaccg
     1141 gctccgccga acagaatggc cgccggctgg tgatggtgct ttcaggactg accagcttca
     1201 accagcgcat cgccgagtcg gtgcgcttca tggaatgggg ctttaaggcc tggcaggcga
     1261 agccgctgtt caaacagggc gcgcatgtcg aggccgccga cgtgcagctg ggcgacgcca
     1321 agcaagtggg gctgatcgct ccgcgcaacc ttgcggtgac tctgccggcc gggtcggctt
     1381 ccaatgttca ggtcaaggtc gtctatgacg gtccgatcaa ggcccccgtc aagaagggcc
     1441 agcatattgc cgatctggtc gtgaccacgc ccgacacgcc gccgcagacg atgccgctcg
     1501 tcgccgaaaa cgatgtcggc cgggcaggct ttttcggccg tgtttgggcc gcgctcctgt
     1561 ccttcttcgc ttgagggccc gctttatcag cctcgaagga ggcgagggcg tcggcaaatc
     1621 gacccaggcg cgccggttgg ccgaggcgat gcgcgcgcgc gggatcgagg tgctcctcac
     1681 gcgcgagccg gggggcagcc cgggcgcgga ggcgatcagg caattgctgt tggaaggcga
     1741 acccaatcgc tggtcgccgg gcgcggaagc cctgctgttc gctgccgccc gggccgatca
     1801 tgtcgtcaag acgatcgaac ccgcgctcga ggccggccaa tgggtgatat gcgatcgttt
     1861 catcgacagc tcgcgtgcct atcaggggat cgccggcggc gtcggcgatg cggcgatcca
     1921 gaatcttcac cagatcggca gcgacgggct gatgccggat cgcacattgg tcctggcgct
     1981 caccaaagcc gacgccgccg cacgggccca tgcgcgcgat ggcgggcgac cggaccggat
     2041 cggcgggcgc gaagcggaat ttcacgccca ggtcgctcag gcctttagcg attttgctcg
     2101 cgacgatccc gaacgaatcc ggcttgtcga ggcgagcggg agcgaggaag aggtgacggc
     2161 ccggctgctc gcggcactcg aagacctgct gccatgacgt cacttctagg ccatgacgct
     2221 caagcggccg cttttctaag cgcgatgcgc gcggcgcggc tgcaccatgc ctggttgctg
     2281 actggcccgc gcggcgtcgg caaggcgagc ttcgccaagg cggccgcact gcgcctgctc
     2341 acggaagccg ccggcccggc gccgagcggc actggcttgg aggttgatcc cgaacaccgg
     2401 atcgcccggc tgttcgcggc cggcagtcac ccggatttcc gtctcgtcga acgcgttccc
     2461 tggg
//
LOCUS       DASQVK010000286         2736 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_334727,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000286 DASQVK010000000
VERSION     DASQVK010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2736
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334727"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..205
                     /locus_tag="VE567_06065"
     CDS             <1..205
                     /locus_tag="VE567_06065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48443.1"
                     /translation="APRPLGSAYYRARVTLEASPHLRDTPDGFRLRPGMPLTADVKVG
                     KRTLVGYLFSRVLPTFQDGMREP"
     gene            234..2006
                     /locus_tag="VE567_06070"
     CDS             234..2006
                     /locus_tag="VE567_06070"
                     /inference="COORDINATES: protein motif:HMM:NF019843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48444.1"
                     /translation="MFKRLTSVMSPAARVRSAVERAKAGQAAEVFPVLAHAAERGNAE
                     AQFWVGKAYLDGKGVPPSRSTAATWLEKAASAGLVEAQSVLAALYLTGAGKAEGVTPG
                     SPLFGDVDRGEPDFDRAVHWAEPAAEAGHPEAQALLGYVFTSGPERFRDLSAADEWYR
                     KSAAAECPQGALGHGLALMRTAGTEQERREATAQLARAAGANLPLGLYLFGVALENGV
                     GVERDLAKAARHFQQSAQRGVRQAQARWGLALLEGRGVERDPVNGESWLRRAALAGDP
                     EAAALVGDLYARGGDLPPNYAEAATWYARAAEGGHAAAARTLAMLYMNGAGVPRDQNE
                     AARWFRISGERGDKLARSSLADLVLRGGGQAEDRIRTREWFEAAASEGDLVAAFNYGV
                     CLAEGVGIERDLEAAAQWLRRAADGVANAQFWYGRMLAEGRGVEADLAGGRAWIKRAA
                     DAGLVEAQVALAEMMVNARGGPRDHAGAKALFEAAAEKGHPGAQFAMGALLGGGHDIL
                     VDRPAAQAWFAKAAAHKHPYALLMLGRYLARGLAGQVDRVQARALLQSAVDAGLAEAA
                     GDLAALAQASPLQPAPVFKKMNLG"
BASE COUNT          440 a          876 c          987 g          433 t
ORIGIN      
        1 ggcgccgcgg ccgcttggga gcgcttacta tcgcgcgcgg gttacgttgg aggcgtcgcc
       61 gcacctgcgc gacacgcccg acggcttccg cttgagaccc ggcatgccgc tgaccgcgga
      121 tgtgaaggtc ggcaagcgca cacttgtcgg ttatctgttc tcgcgcgttc tgcccacctt
      181 ccaggacggc atgcgcgaac catgacggcg atcgaaggcg tgtagttttg gccatgttca
      241 agcgcctgac ctcggtgatg tcgccggccg cgcgcgttcg tagcgcggtc gagcgggcga
      301 aggccgggca ggcggccgag gtctttcctg ttctcgccca tgcggccgag cggggcaacg
      361 cagaggcgca gttctgggtc gggaaagcct accttgacgg caagggcgtg ccgcctagcc
      421 gcagcaccgc ggccacttgg ctcgagaaag cggccagcgc cggcctggtc gaggcacagt
      481 ccgtccttgc cgcgttatat ctgacgggcg ccggcaaggc tgagggcgtc acgccgggct
      541 cgccgctatt cggcgacgtc gaccgtggcg agcccgattt cgaccgggcg gttcactggg
      601 ccgaacccgc cgccgaagcc ggccacccgg aggcgcaggc gttgctcggc tatgtgttca
      661 cgtccgggcc cgagcgcttc cgcgatctct cggccgcgga cgagtggtat cgcaagtcgg
      721 cggccgcgga atgtccgcaa ggcgcgctcg gccacgggtt ggccctgatg cgaacggcgg
      781 ggaccgagca ggagaggcga gaagctaccg cccagctcgc gcgcgcggcg ggcgccaacc
      841 ttccgctcgg gctttacctg tttggagtgg cgctcgagaa cggggtcgga gtcgagcgcg
      901 acctggcgaa agcggccaga catttccagc aatcggcgca gcgtggcgtg cgccaagcgc
      961 aggcgcgctg ggggttggcg ttgctggaag ggcgcggggt ggagcgcgac ccggtgaacg
     1021 gcgagtcctg gctccgccgg gccgcgctgg cgggtgatcc ggaagccgcg gcgctcgtcg
     1081 gcgatctcta cgcaaggggc ggcgacctgc cgccgaacta tgccgaggcc gccacctggt
     1141 acgcaagagc ggccgaaggc ggccatgccg ccgccgcacg gacgttggcg atgttgtata
     1201 tgaatggcgc cggtgtcccg cgcgatcaga acgaggccgc tcgctggttc cgtatttccg
     1261 gtgagcgcgg cgacaaattg gctcgctcca gcctggccga cctcgtcttg cgcggcggcg
     1321 gccaggcgga ggatcgcatt cgcacgcgcg aatggttcga agccgccgcg agcgagggcg
     1381 acctcgtggc cgccttcaat tacggcgttt gcttggccga gggcgtgggg atagagcgcg
     1441 atctcgaagc ggcggctcag tggcttcgcc gggcagcgga tggggtcgcc aacgcccagt
     1501 tctggtacgg acgaatgctg gcggaaggcc gcggggtgga agccgacctt gccggcggcc
     1561 gcgcctggat caagcgagcc gcggacgccg ggctggtcga agcgcaggtc gcgctggccg
     1621 agatgatggt caatgccagg ggcggcccac gggatcatgc cggggccaag gcgctgttcg
     1681 aagctgcggc cgaaaagggt catccggggg cgcagttcgc catgggcgcg ctgctcggcg
     1741 gcgggcatga catcctggtc gaccgcccgg ccgcgcaggc ctggttcgcc aaggcggcgg
     1801 cccacaagca cccttacgcg ctgctgatgc tcggccgata tctcgcccgc ggccttgccg
     1861 ggcaggtcga tcgggtgcag gcaagggcgc tcctgcaaag cgccgtggac gccgggctgg
     1921 ccgaagccgc gggcgatctg gccgcgctcg cgcaggcttc gcctcttcag ccggcgccgg
     1981 tgttcaagaa gatgaactta ggctagtcaa aatccagctc ttatgttcac ggtcaagggt
     2041 gaaggcatga tggtcttgct gctcgggagt ttgagagcag ttgcgtcggc cgacgctgca
     2101 cagggccgga gcggcgggca gagtcgacgg tcgatcaagc ccgtatccac gggcctaccg
     2161 ccttccgtgt tgtcggctcg gggctttcct cggtctagag gacgggtgtc gaaccgtgaa
     2221 ttcgccatat aactaggggg cgggagttcc cctccgtggc gccgccctcg gatccgcact
     2281 cgggcaatgc ttggaactcc cgcgaaattt agggattata ccaacggcaa gggagactaa
     2341 ctcgccggat ccccacgacg gagcgggcgt ggttcgcggg cggtggacga acacggccaa
     2401 gtcgctttgc gagcgcagca gcgcgcgctg gaagttctcc tcgaagggcg gccccagcac
     2461 gaacccgagc aggaccggcg ccgggtgaaa gccgagcagc agcagctagc caacccgccg
     2521 atgaccaatg cctggcctac ctagaagacg ctgtaattgg tggtgtaaac cccgattcag
     2581 acgaagaaca acgcgccccc gttagatcac tctggcaacc attgcctcac tgagcgatga
     2641 tcccctcgtc agcatgccag tactgtcagc ctgacaggca gctcatccct gcccaggaac
     2701 gccgctccta taccacgcgg cgggacacga tctttg
//
LOCUS       DASQVK010000287         2384 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_461052,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000287 DASQVK010000000
VERSION     DASQVK010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2384)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2384)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2384
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461052"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..713
                     /locus_tag="VE567_06075"
     CDS             <1..713
                     /locus_tag="VE567_06075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48445.1"
                     /translation="APPIRYMPRPVYRRVARNVPQQIYRPVPRYIPQPDYRQVTRYQP
                     QPIYRPVARYIPQPIYRPVIRYQPQPIYRPMIRYAAPTVARYAPIYQPAYDPTSRWSE
                     GDWWNQADWSDPWAASSAPLAYGYAPQDYYPSRYSYVPSDSGYWPADYGPRYDAGYDQ
                     GPLGGGDGLLSTLLPALLQSVMGGNFGLDGLGGLTTLGSGFNVLPLQEASIAPYAPSN
                     TDLTAALLPSLFGSGNLF"
     gene            753..1319
                     /locus_tag="VE567_06080"
     CDS             753..1319
                     /locus_tag="VE567_06080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007704950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HYZ48446.1"
                     /translation="MLIETETTPNPATLKFLPGRPVMTGGTRDFATPEEAEASPLAEA
                     LFDLGDVEGVFFGSDFIAVTAAPGVEWRDLKPNVLGVLLDHFSGDMPLFRPGSAAEIE
                     IAADEIEDPEDADIVAQIKELIETRVRPAVANDGGDIVYRGFQRGTVFLKMQGACSGC
                     PSSTATLKQGIEQLLKYYVPEVTSVQAV"
     gene            1363..1950
                     /locus_tag="VE567_06085"
     CDS             1363..1950
                     /locus_tag="VE567_06085"
                     /EC_number="1.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malonic semialdehyde reductase"
                     /protein_id="HYZ48447.1"
                     /translation="MPPLDDAALDQLFRAARTYNGYLDKPVTEDQLRQIWDLVKMGPT
                     SANQLPARLVWCVSQEAKERLASCALPKNGEKIRKAPVSVIIGMDIDFPELLPELFPH
                     DQTAKHWFGDPEVRRVNAMRNSSLQGGYFIMAARALGLDTGPMSGFDNGRVDELFFAG
                     TSVKSNFISTLGYGDPATIFPRSPRPEFERFNTIL"
     gene            1947..>2384
                     /gene="tsaB"
                     /locus_tag="VE567_06090"
     CDS             1947..>2384
                     /gene="tsaB"
                     /locus_tag="VE567_06090"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017665686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HYZ48448.1"
                     /translation="MRRLAIETATEACSVALFEDGALIGHAHELVGRGHAERLIPMIA
                     GLPDRGRAGQVLVDCGPGSFTGVRVGLAAARAFGLAWSAEVRGYSSLALIAAATFAAY
                     GGFDTLTVAITGGHGEYFTQGFERLGMRMIAPLASLKPEQAAAQ"
BASE COUNT          396 a          798 c          759 g          431 t
ORIGIN      
        1 aagcaccgcc gatccgctat atgccgcgac cggtctatcg gcgtgtcgcg cgcaacgtgc
       61 ctcagcaaat ctaccgtccg gtcccgcgct atatcccgca gcctgactac cgccaggtga
      121 cgcgttacca gccgcagccg atctaccggc ccgtcgcgcg ctacattccg cagcccattt
      181 accggccggt gatccgttac cagccgcagc cgatctatcg accaatgatc cgctacgctg
      241 cgccgacggt tgcgcgctac gccccaatct accagccggc ttatgatccg acctcgcgct
      301 ggtccgaggg agattggtgg aaccaggccg actggtccga tccgtgggcg gcaagctcgg
      361 cgccgctcgc ctacggttat gcgccgcagg attattaccc gagccgctac agctatgtgc
      421 cgagcgacag cggctattgg ccggcggatt acggcccgcg ttacgacgcg ggatatgatc
      481 agggtccgct cggcggcggc gacgggctgc tgagcacatt gctcccggcg ctgctgcaaa
      541 gcgtgatggg cggtaatttc ggcctcgacg gccttggcgg ccttacgacg ctcggcagcg
      601 gtttcaacgt tttgccgctg caggaagcga gcatcgcgcc ctatgcgccg tcgaacaccg
      661 accttaccgc ggccttgctg ccttctctgt tcggaagcgg caacctgttc tgacaccttg
      721 attggcatgg gcgctcggcc cacatggcgc ccatgctgat cgagaccgaa acgacgccca
      781 atccggcgac gctgaaattc ctgcccggcc ggccggtgat gaccggcggc acgcgcgatt
      841 ttgcgacgcc ggaggaagcg gaagcctcgc cgcttgcgga ggccctgttc gatttgggcg
      901 atgtcgaggg cgtgttcttc ggatcggact tcatcgcggt cactgccgcc cccggcgtcg
      961 aatggcgcga cctgaagccc aatgtgctgg gggtgctgct cgatcatttc tcgggcgaca
     1021 tgccgctgtt ccggcccggc agcgcggcgg aaatcgagat cgcggccgac gaaatcgagg
     1081 acccggaaga cgccgacatc gtcgcccaga tcaaggagct gatcgagacg cgggtgcggc
     1141 ccgccgtcgc caatgacggc ggcgacatcg tctatcgcgg cttccagcgc ggcacggtct
     1201 tcctgaagat gcagggggcc tgttccggct gcccctcctc gaccgcgacg ctcaaacagg
     1261 gcatcgagca attgctcaaa tattatgtgc ctgaggtgac cagcgttcag gccgtttgat
     1321 ctgcacgcgc agcccgatac gcgccagaca aggggaaaat tcttgccgcc actcgatgac
     1381 gccgcgctcg atcagctctt ccgcgccgcg cgcacctata atggctatct cgacaagccc
     1441 gtcactgagg atcagctccg ccaaatctgg gacctggtga agatgggtcc gacctcggcc
     1501 aaccagctcc cggcccgatt ggtctggtgc gtcagccagg aagcaaagga gcggctcgca
     1561 agctgcgcgc ttccgaagaa cggtgagaag atccgcaagg cgccggtcag cgtcatcatc
     1621 ggcatggaca tcgacttccc cgaattgctg ccggagctct ttccccacga ccagaccgcc
     1681 aagcactggt tcggcgatcc cgaggtccgc cgggtcaacg cgatgcgcaa cagctcgctt
     1741 cagggcggct atttcatcat ggcggcgcgc gcgctgggtc tcgacaccgg cccgatgtcc
     1801 ggcttcgaca acggcagggt cgacgagctg ttcttcgcgg gcacgagcgt caagtcgaac
     1861 ttcatctcga cgcttggcta tggcgacccg gcgacgatct tcccgcgctc gccccggccc
     1921 gaattcgaac ggttcaatac tatcctttga gacggctggc gatcgaaacc gcgaccgagg
     1981 cctgttcggt cgccctgttc gaggatggcg ccctcatcgg ccatgcccat gagctggtgg
     2041 gccgcggcca tgccgagcgg ctgatcccga tgattgccgg cttgcccgat cggggccgcg
     2101 ccgggcaggt gctggtcgat tgcgggccgg gcagcttcac cggcgtgcgc gtggggctcg
     2161 ccgcggcacg cgcgttcggc ctcgcgtgga gcgcggaggt ccgcggctat tcctcgctcg
     2221 cgctgatcgc cgccgcaact ttcgccgcat atggcgggtt cgatacgctg accgttgcaa
     2281 ttaccggcgg gcacggcgag tatttcaccc aaggttttga aaggctgggt atgcgtatga
     2341 ttgcgccgct cgcttcgctg aagccggagc aggccgccgc gcag
//
LOCUS       DASQVK010000288         2577 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_144780,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000288 DASQVK010000000
VERSION     DASQVK010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2577
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144780"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            101..1903
                     /locus_tag="VE567_06095"
     CDS             101..1903
                     /locus_tag="VE567_06095"
                     /inference="COORDINATES: protein motif:HMM:NF012926.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
                     /protein_id="HYZ48449.1"
                     /translation="MPLPIEHYALIGDCETAALVGRDGSVDWLCWPRFDSPACFAALL
                     GTPDHGRWRIAPVDPAARVTRRYRDGTLVLETRFETAEGAAAVIDFMPPHDTVANLMR
                     LVIGERGRVAFETELVIRFDYGATVPWVSRLEDGAGIQAVAGPNMLVLRTPVPLHGED
                     LRTVGTFSVGAGERVPFVLSHGLSHHVHPSSASTSDALARTETFWHDWSTRCPGAGEW
                     TDAVKRSLLTLKALTYAPTGGIVAAPTTSLPERSGGTRNWDYRYCWLRDATFTLLALM
                     NLGYYDEARAWRDWLLRVIAGSPSQIQILYGIGGERQLVEWEAQWLPGYEGAKPVRIG
                     NAAVSQFQLDVYGEIADAMFQATRGGLATPERAAALRKLVLEYVAQVWREPDEGIWEI
                     RGERRHFTHSKVMAWVAFDRSSRTAAAIGDEAAARGWRRIADEIHAEVCSKGFDPALG
                     SFVQYYGSQQVDASLLQIPLVDFLPASDPRVRGTIAAIERRLVLDGGLVMRYEPTGGV
                     DGLPPGEGAFLACSFWLADNYVLQGRLGEARQLFERLLALRNDVGLFAEEYDPAARRM
                     LGNFPQAFSHVGLINTALNLTRGEGPARERGSGS"
     gene            complement(2117..>2577)
                     /locus_tag="VE567_06100"
     CDS             complement(2117..>2577)
                     /locus_tag="VE567_06100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48450.1"
                     /translation="TIMDPIGASNSWRWFGYENSWVVLDGSLVQSVTGGGHWGGGMYI
                     NAYDMARFGYLTLRHGRWKDRQLLSDQWVDWALTPTPAQPTYGFMNWFLNTDRKLWPS
                     APASAFAHIGNGTNIVYVDREHDLVAVVRWIDNKAIDGFLKRLLAAVAQG"
BASE COUNT          369 a          883 c          892 g          433 t
ORIGIN      
        1 cggcgagggc gcgcggtcgg gcgcgccacc gccgccggtc ggggcgttgc gacaggtaag
       61 gcggcgtcgc gcctcccgtg gtaaacacga tgcgtcctcc atgccgctcc cgatcgaaca
      121 ctacgcgctg atcggcgact gcgagaccgc cgcgctggtc gggcgcgacg gctcggtcga
      181 ctggctgtgc tggccgcgct tcgactcgcc cgcgtgcttt gccgccctcc tgggaactcc
      241 ggatcacggg cgatggcgga tcgccccggt cgacccggcc gcgcgcgtga cccggcgcta
      301 tcgggacggc accctggtcc tcgaaacgag gttcgagacg gcggagggcg ccgcggcggt
      361 gatcgatttc atgccgccgc acgataccgt ggcgaacctg atgcggctgg tcatcggcga
      421 gcgcggccgg gtcgccttcg agaccgagct ggtgatccgc ttcgattacg gggcgacggt
      481 gccgtgggtg agccggctcg aggacggcgc cggcatccag gccgtcgccg gtcccaacat
      541 gctggtgttg cgcacgcccg tcccgctgca tggcgaagac ctgcgcactg tgggcacatt
      601 ctcggtcggt gccggcgagc gggtgccgtt cgtgctgagc catggccttt cgcatcacgt
      661 gcatccgagc tcggcgagca cttcggacgc gctcgcccgg accgagacct tctggcacga
      721 ctggtcgacg cgctgccctg gcgcggggga atggacggac gcggtcaagc gctcccttct
      781 cacgctgaag gcgctgacct acgcgccgac cggcggcatc gtcgccgcgc cgacgacctc
      841 gctgcccgag cggagcggcg gcacccggaa ctgggactat cggtattgct ggctgcgcga
      901 cgcgaccttc acgctgctcg cgctgatgaa cctcggctac tacgacgagg cacgcgcctg
      961 gcgtgactgg ctgctccgcg tcatcgcggg cagcccctcg cagattcaga tcctttacgg
     1021 catcggcggc gagcggcagc tcgtcgaatg ggaagcacag tggctgcctg gctatgaggg
     1081 cgcgaagccg gtgcggatcg gcaatgccgc ggtttcgcag ttccagctcg acgtctatgg
     1141 cgagatcgcc gacgcgatgt tccaggcgac gcgcggcggc ctggcgacgc cggagcgcgc
     1201 cgccgccttg cgcaagctcg ttctggagta tgtcgcccag gtctggcgcg agcctgacga
     1261 gggcatctgg gaaattcgcg gcgagcggcg ccacttcacc cattcgaagg tgatggcctg
     1321 ggttgccttc gatcgaagct cgcggacggc ggcggcgatc ggtgacgagg ccgccgcgcg
     1381 gggctggcgc cgcattgccg acgagatcca tgccgaggtc tgcagcaagg ggttcgaccc
     1441 ggcgctcggc agcttcgtcc agtactacgg gtcgcagcag gtcgacgcca gcctgctgca
     1501 aattccgctt gtcgatttcc tgccggcctc ggatccgcga gtccgcggca cgatcgccgc
     1561 catcgagcgg cggctggtgc tcgacggcgg gctggtcatg cgctacgagc ccaccggggg
     1621 cgtcgatggc ctcccgccgg gcgagggcgc gttcctcgcc tgcagcttct ggcttgccga
     1681 caactacgtc ctccagggcc gcctcggcga ggcacgccag ctcttcgagc gcctgcttgc
     1741 gctccgcaac gacgtcgggc tgttcgccga ggagtacgac ccagccgccc gtcggatgct
     1801 cgggaacttc ccgcaggcct tcagccatgt cggcctgatc aacaccgcgc tcaatctcac
     1861 ccggggcgaa ggtccggcac gcgagcgcgg ttccgggtca tagcgtcgcg cgagttgcgc
     1921 cgcacgattg ccccgggagt tttcgccgcc ctcgaagcgc tgacgtcctc cgcattttgt
     1981 agtgccgggc tccggcccgg ccctcttgtc tttctttgcg ccggttgaag aggagacaaa
     2041 cattgtgccg gcctggaggc cggcgctacg gcaacatgat caagccgttc taccccgacc
     2101 aatctgaacc ggcggcctag ccttgtgcca cggcggccaa cagccgtttg aggaagccgt
     2161 cgatcgcctt gttgtcgatc cagcggacca ccgcgaccag gtcgtgctcg cgatcgacgt
     2221 agacgatgtt ggtgccattg ccgatatggg cgaaggcgct ggccggcgcg ctcggccaca
     2281 gcttcctgtc ggtgttgagg aaccagttca tgaacccgta ggtcggctgg gccggggtcg
     2341 gtgtcagggc ccagtcgacc cattgatccg agagcagctg gcggtccttc caccgcccgt
     2401 ggcgcagcgt gaggtagccg aagcgcgcca tgtcgtaggc attgatgtac atcccgccgc
     2461 cccaatggcc gccgccggtc accgactgca ccaggcttcc gtcgaggacc acccaggagt
     2521 tctcgtaccc gaaccagcgc cacgaattcg aggcgccgat cgggtccatg atggtct
//
LOCUS       DASQVK010000289         8337 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_461080,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000289 DASQVK010000000
VERSION     DASQVK010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 8337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8337
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461080"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(298..609)
                     /gene="rpsJ"
                     /locus_tag="VE567_06105"
     CDS             complement(298..609)
                     /gene="rpsJ"
                     /locus_tag="VE567_06105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014077880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HYZ48451.1"
                     /translation="METQNIRIRLKAFDHRVLDQATGDIADTARRTGALIRGPIPLPT
                     RIEKFTVNRSPHIDKKSREQFEVRTYKRMLDIVQPTPQTVDALMKLDLAAGVDVEIKL
                     A"
     gene            complement(764..1954)
                     /gene="tuf"
                     /locus_tag="VE567_06110"
     CDS             complement(764..1954)
                     /gene="tuf"
                     /locus_tag="VE567_06110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HYZ48452.1"
                     /translation="MAKAKFERTKPHVNIGTIGHVDHGKTSLTAAITKVLAETGGATF
                     VDYANIDKAPEERERGITISTAHVEYETNNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTKEHILLAKQVGVPTMVVFLNKVDQVDDPELLELVELEIREELSK
                     RDFDGDNIPIVAGSALAALEDSNREIGHDAILKLMDAVDDWIPTPERPLDKPFLMPIE
                     DVFSISGRGTVVTGRVEQGIVKVGEEVEIVGIKDTRKTVVTGVEMFRKLLDQGQAGDN
                     IGALLRGIGREDVERGQVLAKPGSITPHTEFTSEVYVLSKDEGGRHTPFFANYRPQFY
                     FRTTDVTGEVQLPEGTEMVMPGDNVQLTVKLIAPIAMDPGLRFAIREGGRTVGAGVVA
                     NILK"
     gene            complement(2036..4108)
                     /gene="fusA"
                     /locus_tag="VE567_06115"
     CDS             complement(2036..4108)
                     /gene="fusA"
                     /locus_tag="VE567_06115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006960295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HYZ48453.1"
                     /translation="MARSHPLERYRNIGIMAHIDAGKTTTTERILYYTGKSYKIGEVH
                     EGTATMDWMEQEQERGITITSAATTCFWNDHRINIIDTPGHVDFTIEVERSLRVLDGA
                     VACFDGVAGVEPQSETVWRQAEKYNVPRMCFVNKLDRTGASFERCVEMIKDRLGARPL
                     VLYLPIGIEGGFKGLVDLVHNRAIIWLEESLGAKFEYQDIPEDMKDAAEAARLELIET
                     AVEQDDAAMEAFFEGTEPTPEELKKLIRKGTLNFSFVPVLCGSAFKNKGVQPLLDAVV
                     DYLPSPLDIPNVQGLKLDGETPDERPADDNAPFSALAFKIMNDPYVGTLTFARIYSGK
                     LEKGIVLNSVKDKKEKIGRMLLMHANSREDIDEAYAGDIVAIAGLKETTTGDTLCASS
                     APIILERMEFPEPVIELSVEPKTKADQEKMGLALNRLAAEDPSFRVSTDHESGQTIIK
                     GMGELHLEILVDRMKREFKVDANVGAPQVAYREYLAKPVDIDYTHKKQSGGSGQFGRV
                     KVQVKPGERGSGFQFFDEIKGGNIPREYIPSVEKGFRETAESGHLIGFPIIDFEVHLI
                     DGAYHDVDSSALAFEICARGAMRETAAKAGIKLLEPIMKVEVVTPEDYLGDVIGDLNS
                     RRGQIQGTDTRGNAQAVSALVPLANMFGYVNQLRSFTQGRAQYTMQFSHYDEVPQNVA
                     DEVKAKLA"
     gene            complement(4178..4648)
                     /gene="rpsG"
                     /locus_tag="VE567_06120"
     CDS             complement(4178..4648)
                     /gene="rpsG"
                     /locus_tag="VE567_06120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005862793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HYZ48454.1"
                     /translation="MARRRRPEKREILPDPKFGDQVLSKFMNSVMLDGKKSVAEQIVY
                     GALETIEQRAKRDPLGVFHDALNNVKPGIEVRSRRVGGATYQVPVEVRTERAQALAIR
                     WLISAARNRSEKTMAARLSGELLDASQNRGNAVKKREDTHRMAEANRAFSHYRW"
     gene            complement(4695..5066)
                     /gene="rpsL"
                     /locus_tag="VE567_06125"
     CDS             complement(4695..5066)
                     /gene="rpsL"
                     /locus_tag="VE567_06125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020185797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HYZ48455.1"
                     /translation="MPTINQLVRKGREPQKAKSKVPAMEQNPQKRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTNQREVISYIPGEGHNLQEHSVVLIRGGRVRDLPGVRYHVLRGVL
                     DTQGVKDRKQSRSKYGAKRPK"
     gene            5643..6080
                     /locus_tag="VE567_06130"
     CDS             5643..6080
                     /locus_tag="VE567_06130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009822792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HYZ48456.1"
                     /translation="MLSQRTRYAIRALLHLSDRFGKGPVQLAEIAAAQNIPAKFLTVI
                     LSEMGRAGLVDTQRGKDGGYWLAKRPGEISYGDVIRLTRGSLALVPCASRLAPEPCKN
                     CVTQDECRIHWVMLKVRDETARILDTVRLSDPVPIPLENVAAE"
     gene            6156..7124
                     /locus_tag="VE567_06135"
     CDS             6156..7124
                     /locus_tag="VE567_06135"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017669841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase family protein"
                     /protein_id="HYZ48457.1"
                     /translation="MSLPPIFDRLRLPIIGSPMFIVSGPDLVIAQCKAGIVGSFPALN
                     ARPQALLDEWLHRITEELAAHSRNHPDRPAAPFAVNQIVHKSNDRLEQDLATCAKWQV
                     PIVITSLGAREDLNQAVHGWGGITLHDVINDRFARKAIEKGADGLIPVAAGAGGHAGI
                     ISPFALVSEIREWFDGPIALSGAIANGHSVLAAQALGADLAYIGSPFIATVEANADPG
                     YKQGIVEGRAGDIVYSDLFTGVHGNYLRQSIVAAGLDPDNLPKGDYKTMDFGGGANQA
                     KKAWRDIWGSGQGIGSVRAVETVADRVNRLEREYRAAKAELLAKVN"
     gene            complement(7126..7584)
                     /locus_tag="VE567_06140"
     CDS             complement(7126..7584)
                     /locus_tag="VE567_06140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1465 family protein"
                     /protein_id="HYZ48458.1"
                     /translation="MALDHGRKMMTARLVDSLYTEAMLLADEARGYFDEIGLADRESL
                     SPFERVSYSCESLKVTTRLMHVIAWLLTRKAVAAGEIPEIDENGESRRLGAATESEAD
                     VVAQLPVKAREIVEASIDLYDRVARIDRDMVEPEPDSPALGLIRKIERAL"
     gene            complement(7659..7856)
                     /locus_tag="VE567_06145"
     CDS             complement(7659..7856)
                     /locus_tag="VE567_06145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013846221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF465 domain-containing protein"
                     /protein_id="HYZ48459.1"
                     /translation="MSEEEITRRLAALRIEHRDLDDSITALMASARTDQLQLARLKRR
                     KLRLKDEIATLEDQLIPDIIA"
     gene            8016..8171
                     /locus_tag="VE567_06150"
     CDS             8016..8171
                     /locus_tag="VE567_06150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HYZ48460.1"
                     /translation="MDNVHLAALQAKHAGLEARIVNELQRPAPDTAAIANLKKQKLRI
                     KDEMART"
BASE COUNT         1398 a         2706 c         2595 g         1638 t
ORIGIN      
        1 gtgcgcatga tccgatcctt ccacacagag gccccgtcgc ctgtcgggct tgggagcgtg
       61 ccaacgaaaa aggcctcagg tcatcccgag gccccagccc aatgtcgaaa tgcgcccccg
      121 cccgggctgg atatccgcat cgctgcgaat ggcggggacg caggccggat cgccgtaaag
      181 gcgctccgcg gtatcccttg ttgttcgttc cgccgaccag gccggcaaag cgcccggctt
      241 caatcaagcc ggagtgacgc agcggtgaat cacctgccgc gtcggggaag tgggccctta
      301 cgcgagtttg atctcgacat caacacccgc agcgagatcg agcttcatca gagcgtcgac
      361 agtctgcggg gtcggctgca cgatgtcgag catgcgcttg taggtgcgca cctcgaactg
      421 ctcgcgcgac tttttgtcga tgtgcgggct gcggttgacg gtaaatttct cgatgcgcgt
      481 cggaagcgga atgggccccc gaataagtgc gccggtccgc cgagcggtgt cggcgatgtc
      541 tcccgtcgcc tggtcgagca cgcgatgatc gaacgccttc aggcgaatcc ggatattctg
      601 ggtttccatg tccactaccg atgcgaaaga gccaagtttc tgggccttgc cggatccgcc
      661 atcccgaact cgttcggcgt gacgggccgc gatgaccctt acataaattg caaaccgccc
      721 ggccccctag agagggccgg gcggcgatgc aagcctttta agcttacttg aggatgttcg
      781 cgacgacgcc ggcgccgacg gtgcggccgc cttcgcggat cgcgaagcgg aggcccggat
      841 ccatcgcgat cggagcgatc agcttcacgg tcagctgcac gttatcgccc ggcatcacca
      901 tctcagtgcc ctcggggagc tgcacttcgc cggtcacgtc cgtggtgcgg aagtagaact
      961 gcggacgata gttggcgaag aacggcgtgt ggcggccgcc ctcgtccttc gacagcacgt
     1021 acacttccga cgtgaactcg gtgtgcggcg tgatcgagcc gggcttggcc agaacctggc
     1081 cgcgctcgac gtcctcacgg ccgatgccgc gcagcagcgc gccgatgttg tcgcccgcct
     1141 ggccctggtc gagcagcttg cggaacattt cgacgccggt cacgacggtc ttgcgggtgt
     1201 ccttgatgcc gacgatctcg acttcctcgc cgaccttgac gatgccctgc tcgacacggc
     1261 cggtgacgac ggtgccgcga cccgagatcg agaaaacgtc ttcgatcggc atcaggaacg
     1321 gcttgtcgag cggacgctcc ggggtcggga tccagtcgtc gacggcgtcc atcagcttca
     1381 ggatggcgtc gtggccgatc tcgcggttgc tgtcctcgag cgcggcgagc gccgagccgg
     1441 cgacgatcgg aatgttgtcg ccgtcgaagt cgcgcttcga aagctcttcg cggatttcga
     1501 gctcgaccag ctccagcagc tcgggatcgt cgacctggtc gaccttgttc aggaacacga
     1561 ccatcgtcgg cacgccgacc tgcttggcga gcagaatgtg ctccttggtc tgcggcatcg
     1621 ggccgtcggc cgccgacacg accagaatcg cgccgtccat ctgcgcggcg ccggtgatca
     1681 tgttcttcac atagtcggcg tggcccgggc agtcgacgtg cgcatagtgg cggttgttgg
     1741 tctcatactc gacgtgggcg gtcgagatcg tgatgccgcg ctcgcgctct tccggtgcct
     1801 tgtcgatatt ggcgtagtcg acgaacgtcg cgccgccggt ttcggcaagc actttcgtga
     1861 tcgccgcggt gagcgacgtc ttgccatggt cgacgtgacc gatggtgccg atgttcacgt
     1921 gcggcttcgt ccgctcgaat ttcgctttgg ccattttctt cctaccttgt gagtctattt
     1981 ccccggccgc catggggctc gcgagaaccg cggcccaata gcgactgttt ttggattacg
     2041 ccagcttcgc cttcacttcg tcggccacgt tctgcggcac ttcgtcatag tggctgaact
     2101 gcatcgtgta ctgcgcacgg ccctgggtga aggaccggag ctggttcaca tagccgaaca
     2161 tgttggcgag cgggaccaaa gccgagaccg cctgcgcgtt gccgcgcgtg tcggtgccct
     2221 ggatctggcc gcggcggctg ttcaggtcgc cgatgacgtc gcccagataa tcctccggcg
     2281 tcaccacttc caccttcatg atcggttcga gcagcttgat gccggccttg gcagccgttt
     2341 cgcgcatcgc gccgcgggcg cagatttcga atgccagcgc cgacgagtcg acgtcgtgat
     2401 aggcaccatc gatcagatgc acttcgaagt cgatgatcgg gaagccgatc aggtgaccgc
     2461 tctccgccgt ctcccggaag cccttttcga ccgacgggat atattcgcgc ggaatgttgc
     2521 cgcccttgat ttcgtcgaag aactggaagc ccgacccacg ctcgcccggc ttcacctgca
     2581 ccttgacgcg gccgaactgg ccggagccgc ccgactgctt cttgtgggtg tagtcgatgt
     2641 cgaccggctt cgcgagatat tcgcgatagg ccacctgcgg cgcgccgaca ttggcgtcga
     2701 ccttgaactc gcgtttcata cgatcgacga gaatctcgag gtggagttca cccatcccct
     2761 tgatgatcgt ctggccgctt tcatggtcgg tggagacgcg gaagctcgga tcctcggcgg
     2821 ccaggcggtt gagcgcgagg cccattttct cctggtcggc cttggtcttg ggctccacgg
     2881 acagctcgat caccggctcg gggaattcca tccgctcgag gatgatcggc gccgaggacg
     2941 cgcacagcgt atcgccggtc gtcgtttcct tcaggccggc gatcgccacg atgtcgccgg
     3001 cataggcctc gtcgatgtcc tcgcggctgt tggcgtgcat gagcagcatg cggccgatct
     3061 tttccttctt gtccttcacc gagttcagga cgatgccctt ctcgagcttg cccgagtaga
     3121 tgcgcgcgaa ggtgagcgtg cccacatagg ggtcgttcat gatcttgaac gccagcgccg
     3181 agaacggcgc attgtcgtcg gccgggcgct cgtccggcgt ctcgccgtca agcttcaggc
     3241 cctggacgtt cgggatgtcg agcggcgacg gcagatagtc gaccaccgca tcgagcaggg
     3301 gctgcacgcc cttgttcttg aaggccgagc cgcacaggac cggcacgaac gagaaattga
     3361 gcgtgccctt gcggatcagc tttttcagct cttccggggt gggctccgtg ccttcgaaaa
     3421 aggcttccat cgccgcgtcg tcctgttcga cggcagtctc gatcagctcg aggcgcgcgg
     3481 cttcggccgc gtccttcata tcctcgggga tgtcctgata ttcgaacttc gcacccagcg
     3541 actcttcgag ccagatgatc gcgcggttat ggaccaggtc gaccaggccc ttgaagccgc
     3601 cctcgatgcc gatcgggagg tacagaacga gcgggcgcgc gcccagcctg tccttgatca
     3661 tctccacgca acgctcaaag ctcgcgccgg tccggtcgag cttgttgacg aagcacatgc
     3721 gcggtacgtt gtacttctcg gcctggcgcc acacggtctc ggactgcggc tcgacgcccg
     3781 cgacgccatc gaagcaagcg accgcgccgt cgaggacgcg cagcgaacgc tcgacttcga
     3841 tcgtgaagtc gacgtggccg ggcgtgtcga tgatgttgat gcgatgatcg ttccagaagc
     3901 aggtcgtagc ggccgacgtg atcgtgatcc cgcgctcctg ctcctgctcc atccagtcca
     3961 tcgtcgccgt gccttcatgc acttcgccga tcttgtagga cttgccggtg tagtaaagga
     4021 tgcgctcggt cgtggtcgtc ttgccggcgt cgatatgcgc catgatgccg atgttacggt
     4081 aacgctcgag cggatggctg cgggccatga tcaaaggttc cttaaagctg caggggacaa
     4141 gccttgggcc cgttcccccg caatatggga tcgaaactta ccagcggtag tggctgaacg
     4201 cgcggttcgc ttccgccatg cggtgcgtgt cctcgcgctt cttgacggca ttgccgcgat
     4261 tctgagacgc atccagcaac tcgcccgaca gccgcgcggc catcgtcttc tcgctgcggt
     4321 tgcgcgccgc agagatcaac cagcgaatgg cgagcgcctg ggcgcgctcg gtgcgcacct
     4381 cgaccggcac ctggtaggtc gcgccgccga cgcggcggct gcggacctcg atgcccggct
     4441 tcacattgtt gagcgcgtca tggaacacgc ccagcggatc gcgcttcgcg cgctgctcga
     4501 tcgtttcgag cgcgccatag acgatctgct cggccacgga cttcttcccg tccagcatga
     4561 ccgagttcat gaatttggag agaacctgat ccccgaattt cggatcaggc aggatttccc
     4621 gcttttcggg acgacgacga cgagccattt caaatgtcct tctgcttcag ctttatccgg
     4681 aacctgtccg gagcttactt cggccgctta gcgccatatt tggagcgcga ctgcttccga
     4741 tccttgacgc cctgcgtatc aagcacgccg cgcaggacgt gatagcgcac gcccggcaag
     4801 tcgcgcacgc ggccgccgcg gatcagcacc accgagtgtt cctgaaggtt atggccttcg
     4861 cccgggatgt agctgatgac ttcgcgctgg ttggtcaggc ggaccttggc gaccttgcga
     4921 agcgccgagt tcggcttttt cggcgtcgtc gtatagacgc gcgtgcacac gccccgcttc
     4981 tgcgggttct gttccatcgc agggaccttc gatttggcct tctgcggctc gcggcccttg
     5041 cggaccagct gattgatcgt tggcattgaa gcccttcacc tttcacacgg ttactttgcc
     5101 gacgctcgaa atcttcaaaa caaaagagcc cgggtggcgt aaagccccct ggcccttcct
     5161 gcgccgacaa tgttcaagct cacccgcgct tccaggggcg gcattcaagt caccaccagc
     5221 ctcgcgagcg tcgcgggcct atagcggtgg catgagcccg ggtcaacggg cccgcgcgaa
     5281 ggttgcgctt accccgctcg ctcagccgtt tgcggccgat tttccttcct cggcgcgttg
     5341 acggtaagct cgagcgagcg cggcatgcgc cgccacagcg gcgcggtgcg gcgcctgcgc
     5401 agccaatctg gcatgttcgg ccgcgcgacg tgcccaataa tcgctttgcg actctgtcat
     5461 tcttgctctc ccccggctcg accgccgcgc gggcggcgag tcggttgtcc acagactagc
     5521 actggcgctg tggaaaatcg ccccaattcg acacaggccg gactcgcagg ccatgtctcg
     5581 cccctccctc agggcgattt cagaaccttg aaaaattcgg cgattcccgc catttccttg
     5641 ggatgctttc ccaacgtact cgttacgcca tccgcgcctt gctgcacctt tcggatcgct
     5701 ttgggaaagg accggtgcag cttgccgaaa tcgctgccgc gcagaacatc ccggccaagt
     5761 tcctgaccgt catcctgtcc gaaatgggcc gggccggcct ggtcgacacg cagcgcggca
     5821 aggatggcgg ctattggctt gccaaacggc cgggcgagat cagctatggc gatgtgatcc
     5881 ggctgacccg cggttcgctg gcccttgtcc cctgcgccag ccggcttgca ccggagccct
     5941 gcaaaaattg cgtgacgcag gacgaatgcc gcatccattg ggtgatgcta aaagtccgcg
     6001 acgagaccgc gcgcatcctc gatacggtcc gcttatccga cccggttccg attccgttgg
     6061 aaaacgtggc ggcggagtaa gcggcgggcc tcccgcttcc gtagcgtctg cggggtggcc
     6121 attgccacgc ccttcggttt ggctatgcag ccggcatgag cttgccgccc attttcgatc
     6181 gcctgcgcct gccgatcatc ggctcgccca tgttcatcgt gtccggcccg gacctcgtca
     6241 tcgcccagtg caaggcgggg atcgtcgggt cttttccagc gctgaacgcg cggccgcagg
     6301 cgctgctcga cgaatggctc caccgcatca ccgaagaact cgcggcgcac agccgcaacc
     6361 atccggaccg gccggcggcg ccgtttgcag tcaatcagat cgtccacaag tcgaacgacc
     6421 ggctggagca ggatttagcg acctgcgcga aatggcaggt gccgatagtc atcacgtcgc
     6481 tcggcgcgcg ggaggacctg aaccaggcgg tgcatggctg gggcgggatc accctgcacg
     6541 atgtgatcaa tgatcggttc gcgcgcaaag cgatcgaaaa aggcgcggac gggctgatcc
     6601 cggtcgcggc cggcgccggt ggccatgccg gcatcatctc gccattcgcg ctggtgtcgg
     6661 aaatccgcga atggttcgac gggccgatcg cgctctccgg cgcgattgcc aacggccatt
     6721 cggtgctcgc cgctcaagcg ctgggcgccg atcttgccta tatcggctcc cccttcattg
     6781 cgaccgtaga ggccaatgcc gacccgggct acaagcaggg tatcgtcgag ggccgcgcgg
     6841 gcgacatcgt ctattcggac ctgttcaccg gcgtgcacgg caattatctg cgccagtcga
     6901 tcgtcgctgc cggactcgat ccggacaatt tgccaaaggg cgattacaag acgatggact
     6961 tcggcggcgg cgccaatcag gcgaaaaagg cctggcgcga tatttggggc tcgggccagg
     7021 gcatcggctc ggtcagagcc gtcgagaccg tcgccgaccg ggtgaaccgc ctcgaacgcg
     7081 aataccgcgc cgcgaaggca gagctgctcg caaaggtcaa ttaatctaga gcgcccgctc
     7141 gatcttgcgg atcaggccca gcgcggggct atcgggctcg ggctcgacca tgtcgcggtc
     7201 gatgcgggcg acgcgatcat agaggtcgat gcttgcctcg acgatttccc gcgcctttac
     7261 gggcagctgc gcgaccacgt ccgcctcgct ctcggtagca gcccccagcc ggcgcgactc
     7321 gccattctcg tcgatttccg gaatctcgcc ggcggcgacc gccttgcgcg tgagcagcca
     7381 ggcgatcacg tgcatcagcc gcgtcgtcac tttcagcgac tcgcacgaat aggagacgcg
     7441 ctcgaacggg gaaagcgatt cgcggtcggc caagccgatt tcgtcgaaat atccccgcgc
     7501 ctcgtcggcg agcagcatcg cctcggtata gaggctgtcg accagccgcg cggtcatcat
     7561 ctttctgccg tggtccaagg ccatgcgggc gcctttgcca tgctgcgaag cgcccggata
     7621 tggcaaagag aggtaaatta agtcccgaaa cgggccgcct aggcgatgat atccgggatc
     7681 aattggtcct cgagcgtcgc gatctcgtcc ttcagcctca gcttgcggcg tttgagccgg
     7741 gcgagctgca gctggtcggt gcgcgcgctg gccatcaggg ccgtgatcga atcgtcgaga
     7801 tcccggtgct cgatccgcag cgccgccagg cggcgcgtga tctcttcctc gctgatcccc
     7861 atcggcagcg accctatgcc cgatcgcggt tgcgctcaag ccgtccgtcg cgtcgacgcc
     7921 agcctccacc gaatttcacg caaaacgacg cgacagactc ggttcgatat gatttattca
     7981 ctgccccatc ggcgaaacga gaggagtgtc gcgcaatgga caatgtgcac ctggccgccc
     8041 ttcaagccaa gcacgccggg ctcgaagccc gaattgtcaa cgaacttcaa cgccccgcgc
     8101 cggatacagc ggcaatcgcc aatctcaaga agcagaagct cagaataaag gacgaaatgg
     8161 cgcgaactta agcgcccggg gctggcaggc gctggcccgt tcagcccgcg tctaccagcc
     8221 cttcaattcc ttgatggatt taagcgaccg gctcggcacc aggatcggct tgacaaagtc
     8281 gggcgtacct tcgccggccc cgaccggctt acgcgcgagt tccgggtcga tctcata
//
LOCUS       DASQVK010000290         3641 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_303103,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000290 DASQVK010000000
VERSION     DASQVK010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3641
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303103"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..630)
                     /locus_tag="VE567_06155"
     CDS             complement(<1..630)
                     /locus_tag="VE567_06155"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003951 - NAD+ kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006741 - NADP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019674 - NAD metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HYZ48461.1"
                     /translation="MTAKRALVASAVDVALEAERELRRRYEWVPVHEADLIVALGGDG
                     FMLQTLHAMLERRRIVPVYGMNRGTVGFLMNDWSVDRIDERLARAKRFEVSPLRMEAE
                     SVAGERVVLPAINEVSLLRETRQTAKLEIIVDDRVVLDELICDGVLVATPAGSTAYNL
                     SANGPILPLGSALHALTPISPFRPRRWRGALLPDRAKVTIRVLDPKQRPV"
     gene            754..2757
                     /locus_tag="VE567_06160"
     CDS             754..2757
                     /locus_tag="VE567_06160"
                     /EC_number="2.7.7.65"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA];
                     GO_function: GO:0071111 - cyclic-guanylate-specific
                     phosphodiesterase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional diguanylate
                     cyclase/phosphodiesterase"
                     /protein_id="HYZ48462.1"
                     /translation="MADTSAGSSFEAAALFVLSFRHRDELLAAAARGGWRAIAARRAA
                     GAERRFVASGAGLAVVDGRGAFDEAIGAIRMLSDPVEANAAALLVLLSRNDVARLGEV
                     FAAGATHYLASPFGEAELLQALRFAARHAQRLGGGGISRPALQEAEELSWRLRPSGFE
                     FSNALQARLGLERARLPLGQACRLLDAPDRAAARGARRRLKSGYGSTAFVHALPDGTR
                     VVHHLSAEHEGATGVLEPLDTEAPLPLHRDPLTGLPDGAAARRWLASQLGEAPRPGVL
                     LVGLNRLQTINEVYGRKSGDALLQAGVRRIEAAAGESRPKGWMARLAGTEFLVGLPGA
                     TPERLRDMAERILAAVERRVSAAPDVLLGADIGGAIANEHEELNALLRRASAALAEAR
                     ETMGNTIRLLDGERADATERAARLVDELSRAMAAGEIDVLFQPQVRIADSRIVGVEAL
                     ARWRHPEFGELGAQALFGAAARAGLVVPLSDLIQTCALTIAARWPEPLAQLRLSLNVT
                     AMDLAQPDFTERMLARIDASGLAPARVTIEVTEEGLIEDLGAAASALAELRRGGYRVA
                     IDDFGTGYSSLAYLKALPLDYLKLDRRLSQDIAGSPRDRVVVRGVIDMARSLGLGVVA
                     EGVETEEQLALLAAEGCTLYQGFLCSEPVGSAELAKLVERTSP"
     gene            2807..3376
                     /locus_tag="VE567_06165"
     CDS             2807..3376
                     /locus_tag="VE567_06165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008828793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoglutarate-dependent dioxygenase AlkB"
                     /protein_id="HYZ48463.1"
                     /translation="MMQADLFAGELLPGLALGPDFLAPVEEAELIARINAQALAPFRF
                     QGWLGKRLTHSFGWSYDFDRGRMEAADPIPDWLLPIRDRAAAFAGLEADALVQTLLIR
                     YDPGAGIGWHKDRPSFDQVVGISLGARCDLRLRRRRPGGFDRLSIPLPPCSAYHLSGE
                     ARRDWEHSIAPMGETRWSITFRSLSAGRP"
BASE COUNT          539 a         1247 c         1257 g          598 t
ORIGIN      
        1 caccgggcgc tgcttcggat cgagcacgcg gatcgtgacc ttggcccggt cgggcagcag
       61 cgcgccgcgc cagcgccgcg gccggaaggg gctgatcggc gtcagcgcgt gcagcgcgga
      121 gccaagcggc aggatcgggc cgttggccga gagattatag gcggtcgagc ctgccggcgt
      181 cgccaccagc acgccgtcgc agatcagctc gtcgagcacg acccggtcgt cgacgatgat
      241 ttccagcttt gccgtctggc gtgtctcgcg cagcagggag acttcgttga tcgccggcag
      301 cacgacccgc tcgccggcga ccgactccgc ctccatcctg agcggggaca cctcgaagcg
      361 tttggctcgt gccagccgtt catcgatccg gtcgacgctc cagtcgttca tcagaaagcc
      421 gaccgtgccg cggttcatcc catagacggg aacgatgcgt cgccgctcga gcatcgcgtg
      481 cagcgtctgc agcatgaagc cgtcgccgcc tagcgcgacg atcaggtccg cctcatgcac
      541 cggcacccat tcgtaacggc gacgcagctc gcgctcggcc tcgagcgcga cgtcgacggc
      601 ggaagcgacc agcgcccgct tggcggtcat tcggaagggt ccatccacgg cgcggccatc
      661 acggcgggga ccttattggg ccggcgggcg cgcggcaagc cattggcgat ctccgtgcac
      721 ttgcctagaa taaggcaaag cagggagcat ttcttggccg acacctccgc cggatcctcg
      781 ttcgaggccg ccgcgctgtt tgtgctgtcg ttccggcacc gggacgagct gcttgctgct
      841 gcagcccgag gcggctggcg cgcgattgcc gcccgccgcg cggccggggc ggaacggcgt
      901 ttcgtcgcga gcggcgcggg tctggcagtc gtggacggtc gcggtgcgtt cgacgaagcg
      961 attggcgcca tccgaatgct ttccgacccg gtcgaagcca acgcggccgc gctcctggtg
     1021 ctgctttccc gcaacgacgt tgcgcgcctg ggagaagtct tcgcggcggg cgccacccat
     1081 tatctcgcaa gcccctttgg ggaagccgag ctgctgcagg cgctgcgctt cgccgcgcgc
     1141 cacgcccagc gcctgggcgg cggcggcatc agccgccccg cgcttcagga ggccgaggaa
     1201 ttgagctgga ggctgcggcc ctccggcttc gaattcagca atgctctaca ggctcggttg
     1261 gggctcgaac gcgcacgcct tccgctcggc caggcatgcc ggctgctcga cgctcccgat
     1321 cgcgccgccg ccaggggggc gcggcgacga ctgaagtcgg gttatggatc gaccgcgttc
     1381 gtccacgcgc tgccggatgg gacgcgggtg gtgcatcatc tgagcgccga acatgagggg
     1441 gcaacggggg tcctggagcc gctcgatacc gaggctccgc tcccgctgca ccgtgatccg
     1501 ctcactggcc tgcccgacgg cgcggcggcg cggcgctggc tggcctcgca gctgggcgag
     1561 gcgccgcgcc cgggcgtgct gctcgtaggg ctcaaccggc tgcagacgat caacgaggtc
     1621 tatggccgca agtccggcga tgccctcctg caggcgggag tacgccgcat cgaagcggcc
     1681 gccggtgagt cccgtccgaa aggctggatg gcgcgtctgg ccggcaccga gttcctggtg
     1741 gggctgccgg gcgccacgcc cgaacggctg cgggatatgg ccgagcgcat tcttgcagcc
     1801 gtcgagcggc gtgtttccgc ggcacccgac gtgttgctgg gcgcagatat cggcggcgcg
     1861 attgcaaatg aacatgaaga gctgaacgcg ctgctgcggc gggcaagcgc cgcgctggcc
     1921 gaagcgcgtg agaccatggg caacacgatc cggctgctcg acggggagcg cgccgacgcc
     1981 acggagcgcg cggcgaggct ggtggacgag ctgagccggg ccatggcggc gggcgagatc
     2041 gatgtcctgt tccagccgca agtgcgcatc gcagacagcc gaatcgtcgg cgtcgaagca
     2101 ctcgcgcgct ggcggcatcc ggagttcggt gaactgggcg cacaggcgct cttcggcgcc
     2161 gctgcgcgcg ccggcttggt cgtgccgctg tcggacctga tccagacctg cgcgctcacg
     2221 attgcggcgc gatggcccga gccgctcgct cagttgcgcc tgtcgctcaa cgtcacggcg
     2281 atggatctgg cgcagcccga cttcaccgag cggatgctcg cccgcatcga cgcgagcggc
     2341 ctcgcgcccg cgcgcgtcac gatcgaagtg acggaagagg gactcatcga ggatctgggc
     2401 gcggcggcat ccgcgctcgc cgagttgcgg cgcggcggct accgcgtcgc catcgacgat
     2461 ttcgggacgg gctattcgag cctcgcttat ctaaaggcgc tgccgctcga ctatctgaag
     2521 ctcgaccgtc ggctgagcca ggacattgcc ggtagcccgc gcgaccgcgt ggtggtgcgc
     2581 ggcgtcatcg acatggcccg ctcgctgggc ttgggagtgg tagcggaagg cgtcgagacc
     2641 gaagagcagc tcgccttgct cgccgccgaa ggctgcacgc tgtatcaagg atttctttgc
     2701 tccgagcccg tcggcagcgc ggagctcgca aagctggtgg agcgcacctc cccctaacgg
     2761 ccggaaatgg gctgcaaggc cgagccgggg accctatctc taggcgatga tgcaagccga
     2821 tctgtttgcg ggcgaactgc tgccgggcct ggcgctgggg ccagattttc tcgcgcctgt
     2881 cgaggaagcc gagctcatcg cgcggatcaa tgcgcaggcg cttgcgcctt tccggttcca
     2941 ggggtggcta ggcaagcgcc tcacgcactc cttcggctgg tcctatgact tcgatcgggg
     3001 ccggatggag gctgccgacc cgattcccga ttggctactc cccatccgcg accgcgccgc
     3061 ggcctttgcc gggcttgaag cggacgccct cgtccagacg ctgctcatcc gctacgatcc
     3121 cggcgcgggc atcggctggc acaaggatcg cccttcattc gaccaggtcg tcggcatttc
     3181 gctcggtgca aggtgcgacc tccggctgcg ccgccgccgc cccggcggct tcgaccggct
     3241 ctcgatcccg ctcccaccat gctcggccta tcatctttca ggagaagcgc gccgcgactg
     3301 ggaacatagc atcgcgccga tgggcgagac ccgctggtcc atcaccttcc gcagcctttc
     3361 tgctgggcgg ccatagcctt cccataacgc agttcgcacg gaccggcttc tatccatagc
     3421 ggacgcgccg aacgtgcagg aacccagccc aaggctggcc gttcttgccg gctctctcac
     3481 aaacgcaggc caaccatatg gcccaaccga agacgtctgg tgcccagcgc ggcctcgccc
     3541 gtttcgaggg gtttagcgat gcggtctttg cgatcgcgct gaccttgctg atcgtcgaga
     3601 tcaaagtgcc tggatctccc gatggccccc atgtctacag c
//
LOCUS       DASQVK010000291         3264 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_82272, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000291 DASQVK010000000
VERSION     DASQVK010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3264
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82272"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..243)
                     /locus_tag="VE567_06170"
     CDS             complement(<1..243)
                     /locus_tag="VE567_06170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016744407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYZ48464.1"
                     /translation="MKVTILGCGTSSGVPRIGNDWGQCDPNEPRNARRRVSILVNTAS
                     TTILVDTSPDLRAQLLDAGLGSVEAVIWTHDHADHVH"
     gene            complement(240..1016)
                     /locus_tag="VE567_06175"
     CDS             complement(240..1016)
                     /locus_tag="VE567_06175"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HYZ48465.1"
                     /translation="MLTDSHCHLNYKGLVEDQAAVIARARAAGVGTMLNISTRESEWD
                     AIIATAETDPDIWASIGIHPHEADAHPDVDTAKLVERARHPKVIGIGETGLDYYYDHS
                     DRERQRASFRAHIAAARETGLPLIVHTRDAEDDTAAILADEMGRGAYSGVIHCFTASG
                     AFADKALELGLYISISGIVTFKNAKDLQETARRLPEDRLLIETDAPFLAPVPHRGKTC
                     EPAFVSDTARFLAELRGAGVEALGEATTRNFGALFSKAMQ"
     gene            complement(1022..2551)
                     /gene="metG"
                     /locus_tag="VE567_06180"
     CDS             complement(1022..2551)
                     /gene="metG"
                     /locus_tag="VE567_06180"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HYZ48466.1"
                     /translation="MAERFYITTAIAYPNGRPHIGHAYEAIATDAIARFQRMMGRETF
                     FLTGTDEHGLKMAQTARDRGVETQALADEMSGYFKEMDRVLNISYDRFIRTTEPAHHA
                     ASQAIWKAMEANGDLYLGRYEGWYSVRDEAFYDEKELVEGEGGRKLSPQGTPVEWTVE
                     ETWFFKLSKYQQPLLDHYAANPDFIRPESRRNEILRFVEGGLADLSVSRTSFDWGVKV
                     PGSEGHVMYVWVDALTSYLTGIGYPGEAPFWPANFHVIGKDITRFHTVYWPAFLMSAG
                     IPLPKSVFAHGFLLHRGEKMSKSLGNVVDPMELASLYGVDALRYFLLREVNFGQDGSY
                     SDEAIVTRANADLANSFGNLAQRVLSFIAKNLGRAPGVGRAEPADAELLDAVAKATRE
                     ELPAAFAELALAQGCEAWMRAVFACNQYVDAQAPWALRKTDPERMEAVLRTLVLAIRD
                     LAIAIRPVIPVSADKLLDMLGASGRTYADLPDRSWIDTAQLQPPSPIFPRLELPAEAA
                     S"
     gene            complement(2569..>3264)
                     /locus_tag="VE567_06185"
     CDS             complement(2569..>3264)
                     /locus_tag="VE567_06185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006949185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HYZ48467.1"
                     /translation="SQPGRNIRIKQIRDLDPLLSMAPSLSSRRAVIIDAADDMERGAA
                     NALLKSLEEPPAGTVVFLISHMPGRLLPTIRSRCRLLRFAPLSDEQMRVVLRRNLPEA
                     DAHELDALVRAGEGAPGQALRFAGLDIATIDAALDTLARTGDPSNTTRMSLAKSLALK
                     AAQPRYEVLLERAPAYIAAHARALRGPALDRALGLWAKARDLAAGAIGLSLDPQATVF
                     QLGSYVAALAAQD"
BASE COUNT          572 a         1037 c         1086 g          569 t
ORIGIN      
        1 gtggacatga tcggcatggt cgtgcgtcca gatgaccgcc tccaccgatc caaggccggc
       61 gtccagaagc tgcgcgcgca gatccgggga cgtatcgacc aggatcgtgg ttgacgcagt
      121 gtttaccaga atcgagacgc gccggcgcgc attgcgcggc tcgttcggat cgcactggcc
      181 ccaatcattc ccgatccgcg gaacgccgga ggacgtgccg cagccgagga tcgtgacttt
      241 cactgcatcg ccttgctgaa cagcgcaccg aaattgcgcg tcgtcgcctc gcccaaagct
      301 tcgacaccgg cgccgcgcaa ctccgccaga aaacgcgcgg tgtcggagac aaaggcgggt
      361 tcgcaggtct tgccgcgatg aggcacgggc gcgaggaatg gggcgtccgt ctcgatcagc
      421 agccggtcct cgggcaagcg ccgggcggtt tcctgcagat ccttggcgtt cttgaaagtc
      481 acgatcccgg aaatcgagat gtaaagtccc agttccaatg ctttgtcggc gaaagctccg
      541 ctggccgtga aacagtggat gacgcccgaa taggctcccc tgcccatttc gtcggccagg
      601 atcgcggccg tgtcatcctc ggcgtcgcgc gtatggacga tcagcggcaa gccggtttcc
      661 cgcgcggcgg caatatgcgc gcgaaagctc gcccgctgcc gctcgcggtc cgaatgatcg
      721 taataataat cgaggccggt ttcgccgatg ccaatcacct tggggtgcct tgcgcgctcg
      781 accagcttgg cggtgtcgac atcggggtga gcatcggcct cgtgtgggtg gatgccgatc
      841 gaggcccaga tgtccgggtc cgtctccgcg gtcgcgatga tcgcgtccca ctcgctttcg
      901 cgcgtcgaga tgttgagcat cgtccccacc cccgccgccc gcgcccgcgc gatcacagcc
      961 gcctggtcct cgaccaggcc cttatagttc agatggcaat ggctgtcggt gagcataggc
     1021 cctagctggc agcttctgca gggagttcaa gccgcgggaa aatagggctc ggcggctgga
     1081 gctgggccgt gtcgatccag ctccggtctg gaaggtcggc gtaggtgcgg ccgctggcgc
     1141 ccagcatgtc cagcaatttg tcggccgaga cgggaatcac ggggcggatc gcgatggcga
     1201 gatcgcggat cgcgagcacg agcgtgcgga gcacggcctc catccgctcg ggatcggtct
     1261 tgcgtagcgc ccatggcgct tgggcgtcca catattggtt gcacgcgaac accgcgcgca
     1321 tccaggcctc gcagccttgg gccagcgcca gctcggcgaa tgcggccggc aactcctcgc
     1381 gcgtggcctt ggcaacggcg tccagcagct cggcgtccgc cggttcggcc cgccccactc
     1441 ccggcgcccg gccaagattc ttcgcgatga agctcagcac gcgctgggcg agattgccga
     1501 agctgttggc gaggtcggca ttggcgcggg tgacgatcgc ttcatcggaa tagctgccgt
     1561 cctggccgaa attcacttcg cgcagcagga aatagcggag cgcatcgacg ccataaaggc
     1621 tcgccagctc catcggatcg acgacattgc ccaaggattt ggacattttt tccccgcggt
     1681 gcagcaggaa gccgtgcgcg aagacgctct tcgggagcgg aatgcccgcc gacatcagaa
     1741 aggcaggcca atagacagtg tggaagcgcg taatgtcctt gccgatgaca tggaaattgg
     1801 ccggccagaa cggcgcttct cccggatagc cgatgcccgt gaggtaagac gtcagcgcgt
     1861 ccacccacac atacatcaca tgcccttcgg agccggggac cttaacgccc caatcgaagc
     1921 tggtgcgcga gacggaaagg tcggccaaac cgccttcgac gaagcgcaga atttcgttcc
     1981 gtctgctttc cgggcggatg aagtccggat tggccgcata gtgatcgagc aagggttgct
     2041 gatatttcga aagcttgaag aaccaggttt cctcgaccgt ccactccacc ggcgtgcctt
     2101 gcggcgagag cttccgcccc ccttccccct cgaccagctc cttttcgtcg tagaacgcct
     2161 cgtcgcgcac cgaataccag ccctcgtagc ggccgagata caggtcgcca ttggcttcca
     2221 tcgctttcca gatcgcctgg ctggcggcat ggtgcgcggg ctcagtggtg cggataaacc
     2281 gatcgtaact gatgttgaga acccggtcca tttccttgaa atagcccgac atctcatcgg
     2341 cgagcgcctg cgtttcgacg ccccggtcac gcgccgtctg cgccattttc aggccatgct
     2401 cgtcggtgcc ggtgaggaag aaggtctccc ggcccatcat ccgctggaag cgcgcgatgg
     2461 catcggtcgc gatcgcttca taggcatggc cgatatgcgg gcggccattg ggataagcga
     2521 tagcggtggt gatgtagaag cgttcggcca tcgccgccct ttagcgggtc agtcttgcgc
     2581 ggcaagcgcg gccacatagg agcccagctg gaagaccgtg gcttgcgggt cgagcgaaag
     2641 gccaatcgcg ccggcggcga gatcgcgagc cttggcccag aggccgaggg cgcggtcgag
     2701 cgccgggccg cggagggcac gggcgtgcgc agcgatatag gccggtgcgc gctcgagaag
     2761 gacctcgtag cggggctgag cggcctttag cgcgagcgac ttggcgagcg acatgcgcgt
     2821 cgtgttggac gggtcaccgg tgcgcgcgag cgtgtccagc gcggcatcga tcgtagcgat
     2881 gtccaggccc gcaaagcgca gtgcctggcc gggcgccccc tcgcccgccc gcaccagcgc
     2941 atcgagttcg tgcgcgtcgg cctccggtaa gttgcgacgc aacaccacgc gcatctgctc
     3001 gtccgacaac ggcgcgaagc gcagcaagcg gcagcgcgat cggatcgtcg gcagcagccg
     3061 gccgggcata tggctgatga ggaagacaac cgtgccggcg ggcggctcct cgaggctctt
     3121 gagcagtgcg ttggcggcac cgcgctccat atcgtcggcg gcgtcgatga tgacggcgcg
     3181 gcggctcgaa agcgacggcg ccatcgacag caacggatcg aggtcgcgga tctgtttgat
     3241 acgaatgttg cgcccgggct ggct
//
LOCUS       DASQVK010000292         3651 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_461263,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000292 DASQVK010000000
VERSION     DASQVK010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3651
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461263"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            218..1051
                     /locus_tag="VE567_06190"
     CDS             218..1051
                     /locus_tag="VE567_06190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019830921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HYZ48468.1"
                     /translation="MDFSLVDVFGVEDFSGNPVAVVHDASGLSAEQMQRITRWLNLSE
                     TTFLMPPTDPDADYRVRIFTLDREMPFAGHPTLGTCHAWLRAGGAPRNADEVIQECGA
                     GLVPVRRDGERLAFAAPPLIRSGPVQEERLDEIASVLGIGRDQIVDAAWADNGPGWVA
                     VLLESAEDVLALEPARHHPSRMEIGVVGPYPPGSEAAYEVRAIFSDAFGGLLEDPVTG
                     SLNASVAQWMLATGRVETPYVAAQGTRLGRSGRVSIAQADGQIWIGGNTRTLFAGRAT
                     F"
     gene            complement(1241..1314)
                     /locus_tag="VE567_06195"
     tRNA            complement(1241..1314)
                     /locus_tag="VE567_06195"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1280..1282),aa:Gly,seq:tcc)
     gene            complement(1742..2041)
                     /locus_tag="VE567_06200"
     CDS             complement(1742..2041)
                     /locus_tag="VE567_06200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48469.1"
                     /translation="MRLDKIWNLRQATRMGLPAGLAALFLWPLHAAFGATVRPAFIAA
                     LAVAAFCGASILAFTILDLLTVARDPRVLPARIFDLALGASLALPSAAALSALLA"
     gene            2146..2400
                     /locus_tag="VE567_06205"
     CDS             2146..2400
                     /locus_tag="VE567_06205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48470.1"
                     /translation="MRPKLLSSIIVSASLIAAAPAAAAPSSASKLSVVGARAGAPAGN
                     SRLAEGSGGIIALVLVAGIAAIAIVGALADDSNNNNPASP"
     gene            complement(2405..3340)
                     /locus_tag="VE567_06210"
     CDS             complement(2405..3340)
                     /locus_tag="VE567_06210"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010542779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009156 - ribonucleoside monophosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009165 - nucleotide biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HYZ48471.1"
                     /translation="MKLLSGNANPALARAIADYLELSLTDASVRRFADEEVFVEIHEN
                     VRGEDVFVLQPTGYPANDNLMELLICIDALKRASAKRITAVIPYFGYARQDRKPGPRT
                     PISAKLVANLITVAGANRVLSVDLHAGQIQGFFDIPTDNLYAAPVMSADILARFPAQN
                     LMVVSPDVGGVVRARALAKRLNNAPLAIVDKRRERPGESEVMNIIGDVSGRFCILVDD
                     IVDSAGTLCNAAAALREAGAEDVVAYVSHGVLSGGAVARVDGSALTELVITDSIASTE
                     AVGQAKRIRTLTIAPLLAEAIRRIADESSVSSLFD"
     gene            3451..>3651
                     /locus_tag="VE567_06215"
     CDS             3451..>3651
                     /locus_tag="VE567_06215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006952280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HYZ48472.1"
                     /translation="MTDRLRIALVQICQRVGDLAGNADAMLAWRDKARGADLVVFPEM
                     QLIGYPPEDLVLKPSLIRRAEEQ"
BASE COUNT          650 a         1144 c         1257 g          600 t
ORIGIN      
        1 caagtcgatc tgcccgacat gcatcaacaa tcggggcagg accggaatga ccagcccgaa
       61 accgatcgaa tcgatgaaga tcgtcgcgag gacgaaccag accccctgcg ccggacgctc
      121 gcccatttct cttttgctcc cggcaagccc caatcggttg cgcgagggga ataggtgagc
      181 gaaggggagg tgcgcaacct gaagggaagg tccagcgatg gatttcagcc tggtcgatgt
      241 gttcggagtc gaggatttca gcgggaatcc ggtcgcggtg gtgcatgatg cgagcggtct
      301 gtcggccgag cagatgcagc gcatcacgcg ctggctgaac ctgtccgaga ccacattcct
      361 gatgccgccg accgatccgg acgccgatta ccgcgtgcgc atcttcacac tggaccgcga
      421 aatgccgttc gccggccatc cgacgcttgg cacttgccat gcctggctgc gggcgggcgg
      481 cgcgccgcgg aacgcagatg aggtgatcca ggaatgcggc gccgggctgg tacccgtcag
      541 gcgcgacggc gagcggctcg ctttcgccgc gccgccgctg attcgctcgg ggccggtcca
      601 ggaggagagg ctcgacgaaa tcgcgtcggt gttgggaatt ggccgcgatc agatcgtcga
      661 tgccgcttgg gcggacaatg gccctggctg ggtggcagta ttgctcgagt cggccgagga
      721 cgtgctggcg ctggagccgg cccgccatca tccatcgcgg atggagatcg gcgtggtcgg
      781 gccctatcca cccggcagcg aggctgccta tgaagtgcgc gcgatcttca gcgatgcgtt
      841 cggcgggctg ctggaagacc cggtgaccgg cagcctcaat gcctcggtcg cgcaatggat
      901 gctcgcgacc ggccgggtcg aaacacccta tgtcgccgcc cagggcacca ggctcggccg
      961 cagcggccgc gtctcgatcg cccaggcgga cggccagatc tggatcggcg gcaacacccg
     1021 cacgctattt gccggccgcg ccacgttctg aaacgcggga gcggccatct tagagagcgg
     1081 tacggcgtgc ctcatcacgt cggcgctggt gcagtggcgt gcgcgaaacc ggacagatga
     1141 gcatagctcg gtccgattcg ccgggcgcga tgacagacaa tgcttgtacg ggcgtaccga
     1201 acgtccgcca tgtcgagaaa atcgggatgc gtatgttcgg tggagcgggt agcgggaatc
     1261 gaacccgcgt attcagcttg gaaggctgat gttctaccat tgaactatac ccgcacatca
     1321 agcacttagc tcaagtttgc ggcatcgttt tacagggcgt tttacaaaga cccttcggcg
     1381 atgcgacggc cgagtgccat gatcgggggc gcgccgtcaa catcggctgt tctgcggtga
     1441 gggcggagcg cccgccgcac gctatttggt gggcgcaggc cggcggagcg gtgcgtgatc
     1501 gggccgaatc ggctcgcggc cccagaaatt gccgccccac aaggccgcgg cagattgctg
     1561 aagcgataag ggataagtgg cgagcgggcg cggcgtttgt tggttttgtt cgggcatggg
     1621 gctctcctgc cgctggatga aagcgcttcc ccccgcacgc tcctgattga agctgtgcat
     1681 gagtgggata gtcagcaagc atgtcagccg cgtgacacgg aaatgctcgc tcgatgactg
     1741 gtcaggcgag cagtgctgaa agcgcggccg ccgacggcag ggcgagagag gcacccagcg
     1801 ccaggtcgaa gatgcgcgcc ggcagcacgc gcggatcgcg cgcgacggtc agcaggtcga
     1861 gaatcgtgaa ggcaaggatc gatgcgccgc agaacgccgc aaccgcaagc gccgcgatga
     1921 aggcgggccg caccgtcgcg ccgaaagctg cgtgcagcgg ccagaggaac agggccgcga
     1981 gtccggccgg caagcccatg cgcgtcgctt gcctgaggtt ccagatctta tcgaggcgca
     2041 tgcggatgct gtgcgcggtc gcacgggcgc gtgcaagcgt ccggcatgga acctgaacgg
     2101 ccgcgcgggg ttgtcagcag gcgtgtccaa aagagggagg tacgcgtgcg cccgaagttg
     2161 ctcagctcca ttatcgtctc ggccagcctg attgcggcag ccccggcagc ggcggcaccg
     2221 tcgtctgctt cgaaattgtc agtggtcggc gcccgcgccg gcgccccggc cggcaatagc
     2281 cggctcgccg aaggctcggg cggcatcatc gcgctcgtgc tggttgccgg catcgcggcg
     2341 atcgccatcg tcggcgcgct ggccgacgac agcaataaca ataaccccgc cagcccgtag
     2401 gccactagtc gaacaggctg gagaccgaac tttcgtcggc gatccgccgg atcgcctcgg
     2461 cgagcagcgg cgcgatcgtg agcgtgcgga tgcgcttcgc ctggccgacc gcttcagtcg
     2521 aggcgatcga atcggtaatg accagctcgg tcaaggccga gccgtcgacg cgcgcgaccg
     2581 cgccgcctga aagcacgccg tggctcacat aggcgactac atcttccgcg cccgcttcgc
     2641 gcagcgcggc ggcggcgttg cagagcgtgc ccgccgaatc gacgatgtcg tccaccagaa
     2701 tgcagaagcg tccagagacg tcgccgataa tgttcatcac ttccgattcg cccggccgct
     2761 ctcggcgctt gtcgacgatc gccagagggg cattgttcag gcgcttggcg agcgcgcggg
     2821 cgcgcaccac gccgcccacg tccggcgaca cgaccatcag attctgcgcc gggaaccgcg
     2881 cgagaatgtc tgccgacatc accggggccg catagagatt gtcggtcggg atgtcgaaaa
     2941 agccctgtat ctgtccagcg tggagatcga ccgatagaac gcgattcgcg cccgcgacgg
     3001 tgatcaggtt cgcaaccagc ttggccgaaa tcggcgtgcg cggtccgggc ttccggtcct
     3061 gccgggcata gccgaaatac gggatgacgg ccgtgatccg cttggccgac gcgcgtttca
     3121 aggcgtcgat gcagatcagc agctccatca gattgtcgtt ggcaggataa ccggtcggct
     3181 gcagcacgaa cacgtcctcg ccgcgcacat tctcgtggat ttcgacgaac acttcctcat
     3241 cggcgaagcg gcgcacgctg gcgtcggtga gcgacaattc gagatagtcc gcgatcgcgc
     3301 gcgcgagggc gggattggcg ttgccggaaa gaagtttcat gtgtcgagcc ccgccgatgt
     3361 cacgattctg tcgcgggtca ttaggacgcg gacgcgcgca agcaaagacc cggcgttgcg
     3421 gggcccgacg gcgccgccta gatgccgtgc atgaccgacc ggctccgcat cgctcttgtc
     3481 cagatttgcc agcgcgtggg cgaccttgcc ggcaacgccg atgcgatgct tgcctggcgc
     3541 gacaaggccc ggggcgcgga cctggtcgtg ttcccggaga tgcagctgat cggctatccg
     3601 cccgaagatc tcgtgctcaa gccctcgctg atccgccgcg ccgaggagca g
//
LOCUS       DASQVK010000293         5795 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_461273,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000293 DASQVK010000000
VERSION     DASQVK010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5795
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461273"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..464
                     /locus_tag="VE567_06220"
     CDS             <1..464
                     /locus_tag="VE567_06220"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010337976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HYZ48473.1"
                     /translation="QDEVLRAFKAGELERDVVVIVRFQGPAANGMPELHKLTPALGVL
                     QDRGFRVALVTDGRMSGASGKVPAAIHLYPEALHGGPLARVADGDLVRVDAVAGTIEV
                     LTPGFLDRPAAAAPAPAAGLGRELFALFQGAADDAERGASPLLAALDARSS"
     gene            complement(577..990)
                     /locus_tag="VE567_06225"
     CDS             complement(577..990)
                     /locus_tag="VE567_06225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010403848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48474.1"
                     /translation="MRLKRFWSLGAVAAAILLGGAANAPIVAFSRIEPGSWQLRALDS
                     SAPERRLCVDDPYDLIQLRHPGAACSRFVLTNEADRATVHYTCPGAGYGRTTIRVETG
                     QLVHIDSQGLANQAPFQMSFEARRVGACTPEHAGR"
     gene            complement(1053..1964)
                     /locus_tag="VE567_06230"
     CDS             complement(1053..1964)
                     /locus_tag="VE567_06230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HYZ48475.1"
                     /translation="MLSQNELDRTLGFAILEQHARGRLVRLGPVLDEILSAHAYPPVI
                     EKLLAEALALTALLGATLKEETGQMTLQAQTESGPVELLVCDYKDSQLRGYVQFNADK
                     LAVAPADPSLFALFGKGYLAITFDQALTGERYQGIVPLEGASLAEAAQNYFAQSEQIP
                     SLVRLAHRHDAEGRCIAGGLLLQHLPEGEEGRDRLHTRLDHPEWQHVEALGATIRDSE
                     LTDPALPMETVVWRLFHDEKEVRVLGGAVLTRGCRCNREHILSVLSRFPAEEQAEMAD
                     ADGLIRVDCAFCSISHPIQLSELAPVE"
     gene            complement(1965..2903)
                     /gene="argF"
                     /locus_tag="VE567_06235"
     CDS             complement(1965..2903)
                     /gene="argF"
                     /locus_tag="VE567_06235"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007714051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HYZ48476.1"
                     /translation="MTRHFLDLASAGAEGVAAILSEALERKQARAGWPKGKPDADRPL
                     DGRVLAMIFEKSSTRTRVSFDVAIRQLGGSSIVMDAGSMQLGRGETIADTARVLSRYV
                     DAIMIRTDDPAKLDALSAYASVPVINGLTDRSHPCQIVADLLTAIEKGVQLPGSKWAW
                     LGDGNNVLHSIIEAAGLLKFSVAAGCPEGFDPHDAFVRDANERLAGSNARVTIERDPA
                     RAAADADVVVTDTWVSMGQADSAEKIDAMTPYQVNAALMAHAKPAATFLHCLPAHRGE
                     EATDEILDGSQSAIWEEAENRLHAQKAILLWCFGLI"
     gene            complement(2909..4099)
                     /locus_tag="VE567_06240"
     CDS             complement(2909..4099)
                     /locus_tag="VE567_06240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004208174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HYZ48477.1"
                     /translation="MSITPLMPVYPRCGVRPVRGEGVYLFDEKGERYLDFAAGIAVNL
                     LGHGHPHLVEAIQRQAATLMHVSNLYGSPQGEALAQRLVDNTFADTVFFTNSGAEAVE
                     CAMKTARRYHFAGGDAHKSTLITFKNAFHGRTLGGISATDQEKMRSGFEPLLPGFTVV
                     EFNNLEAAEAAVDETTAGFLVEPVQGEGGIRVASKEFMQGLRRICDDKGLMLVLDEVQ
                     SGVARTGTLFAHEQYGITPDIMAIAKGIGGGFPLGACLATEEAARGMVIGTHGSTYGG
                     NPLAMAAGQAVLDVVLAPGFLEHVRAMGDRLRQALEQMIPNYDDLFEGVRGMGLMLGI
                     KLKSDSRGFVAHLRDNHGLLTVAAGENVVRVLPPLTIDETHIAECIERLSAGARDYAP
                     AQAA"
     gene            complement(4308..4742)
                     /locus_tag="VE567_06245"
     CDS             complement(4308..4742)
                     /locus_tag="VE567_06245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48478.1"
                     /translation="MKKVIVSLALAASALAAAAPASAQYYGDRGYQDRYYDQRYGDRY
                     RDRGYGYGNGERFTRHNWLGQRLDAIGYQIQRGRARGTLTPGEAQRLGFEHRDLWRVA
                     QRYYASGGLDGREREILMQRLDQLQERLQYQQRDGQRGYWRY"
     gene            complement(4821..5522)
                     /locus_tag="VE567_06250"
     CDS             complement(4821..5522)
                     /locus_tag="VE567_06250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017668813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HYZ48479.1"
                     /translation="MTMIPYRAGALDCEAYVSRPVGPGPHPAVLIAPTVRGPTSLEQA
                     KADALAREGYVGIVIDHYGRDRRDPGEQAFALMNELLADRARLRRQLQDALAFAQTLD
                     GVDPGRLAIIGYCFGGLCALDLARTGTDEVKGAISVHGVFSRPELGPQPPIRAKVLVL
                     HGWDDPLAPPDDVLGLTRELTEAGADWQLHAYGHTVHGFTNPGANVPGRVLYNAVADA
                     RANAAIVQFLGEALA"
     gene            complement(5519..>5795)
                     /locus_tag="VE567_06255"
     CDS             complement(5519..>5795)
                     /locus_tag="VE567_06255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010546097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYZ48480.1"
                     /translation="KFDHAAAVTNFVVAPLSLLSGTFYSVEALSPTFRAVSHANPFFY
                     IISGFRYGFLGDADSPVAIGMAVVLGVNLVLGSICFAVLRSGWKIKA"
BASE COUNT          997 a         1964 c         1894 g          940 t
ORIGIN      
        1 accaggacga agtgcttcgc gcgttcaagg ccggcgagct cgagcgcgac gtggtggtga
       61 ttgtgcgctt ccagggcccg gccgcgaacg gcatgcccga gctgcacaag ctcaccccgg
      121 cgctcggcgt gctgcaggat cgcggcttcc gcgtcgctct cgtcacggat gggcgcatgt
      181 cgggcgccag cggcaaggtg cccgcggcaa tccatctcta tcccgaagca ctgcacggcg
      241 gtccgctcgc gcgcgtggcg gacggcgatc tggtccgcgt ggacgccgtc gccggcacga
      301 tcgaggtgct cacccccggc tttctggacc gcccggcggc tgccgcgccg gcgcctgccg
      361 ctggtcttgg gcgcgagctt ttcgcactgt ttcaaggtgc cgcggacgat gcggaacgcg
      421 gcgcgtcgcc cctcctcgca gcgctggacg cgcgtagctc ctgaaaacaa atgggccgcc
      481 ccgtggggcg gcccagtaaa gcctttcggc cattagggag gaaagcgtgc ctcatcgaca
      541 cgccgctctt atataccggc cttagtaaat ggcggcttaa cggccggcat gctcgggcgt
      601 gcaggcgccg acccggcggg cctcgaacga catctggaac ggcgcctggt tggcgagccc
      661 ctgcgaatcg atatgcacca gctgcccggt ctcgacgcgg atcgtcgtcc ggccatagcc
      721 ggcgccgggg caggtgtaat gcaccgtcgc tcgatcagcc tcgttggtca gcacgaagcg
      781 cgagcaggcg gcgcccggat ggcggagctg gatcaggtca tagggatcgt cgacgcacag
      841 ccgccgctcg ggcgcggagc tgtccagggc gcggagttgc caggaaccgg gctcgatacg
      901 gctgaaggcg acgatgggcg cattcgccgc gccacctaac aggatggccg cagccaccgc
      961 gcccaacgac cagaaccgct tcagccgcat gcctattacc ccctgccccg cagtgccgcg
     1021 ggcccgtagc ggtaatttgt tacgacgccg tattattcaa ccggtgcgag ctccgacagc
     1081 tgaatcggat gactgatcga acagaacgca cagtcgacgc gaatgagccc gtcggcgtcg
     1141 gccatttccg cctgttcctc ggcgggaaag cgagaaagca cgctcaggat atgttcgcgg
     1201 ttgcagcggc agccgcgcgt cagcactgcg ccgcccagca cgcgcacttc cttctcgtca
     1261 tggaagagcc gccacacgac ggtttccatc ggaagggccg ggtcggtgag ttcggaatcc
     1321 cggatcgtcg cgcccagcgc ctcgacatgc tgccattcgg gatggtcgag tcgcgtgtgc
     1381 agccggtcgc gcccttcctc gccctcgggc aagtgctgga gcaacaggcc gcctgcgatg
     1441 cagcgccctt cggcgtcgtg ccggtgcgcg agccggacga ggctcggaat ctgctcggac
     1501 tgagcgaagt aattctgcgc ggcctcggcc agcgacgcac cttccagcgg cacgattcct
     1561 tgatagcgct caccggtcag ggcctgatcg aacgtgatcg cgagatagcc cttgccgaac
     1621 agcgcgaaca gcgagggatc ggccggcgcc acggcaagct tgtccgcatt gaactgtaca
     1681 tagccgcgca gctggctgtc cttatagtcg cagaccagca gctcgaccgg gccgctctcg
     1741 gtctgcgcct ggagcgtcat ttgcccggtt tcttccttca gcgtcgcgcc gagcagcgcg
     1801 gtcagcgcca gtgcctcggc gagcagcttc tcgatgaccg gcggataggc gtgcgccgag
     1861 aggatttcgt cgagcacggg cccgagccgc accagccgcc cgcgcgcatg ctgttcaagg
     1921 atcgcgaacc cgagggtccg gtccagctca ttctgggaaa gcattcagat cagtccaaag
     1981 caccaaagca aaatcgcttt ttgcgcatgt aggcggtttt ccgcctcttc ccagatggcg
     2041 gactggcttc cgtccaggat ttcgtcggtc gcttcctcgc cgcgatgggc ggggagacag
     2101 tggagaaaag tcgccgccgg cttggcgtgc gccatcagcg cggcattcac ttgatagggc
     2161 gtcatggcgt ctatcttctc ggccgagtcc gcctggccca tcgacaccca ggtgtcggtg
     2221 acgacaacgt ccgcatccgc cgccgcacgc gccggatcgc gctcgatcgt aacgcgcgca
     2281 ttgctgcccg ccagccgctc attggcatcg cgcacgaacg cgtcgtgggg atcgaaaccc
     2341 tccgggcacc cggccgcgac cgagaatttg agcaggcctg ccgcttctat gatcgagtgg
     2401 agcacattat tgccatcgcc cagccacgcc catttggagc cggggagctg cacgcccttt
     2461 tcgatcgccg tcagcagatc ggcgacgatc tggcagggat gcgaacggtc ggtgaggccg
     2521 ttgatcactg gcaccgaggc gtaagcggaa agggcgtcga gcttcgccgg atcgtcggtg
     2581 cggatcatga tcgcatcgac atagcggctg agcacccgcg ccgtgtccgc gatcgtttcg
     2641 ccgcggccga gctgcatgga gccggcgtcc atcacgatcg acgagccgcc aagctgccgg
     2701 atcgccacgt cgaacgatac gcgcgtgcgg gtcgagcttt tctcgaagat catcgccagc
     2761 acgcggccgt cgagcggccg gtcggcgtcg ggcttgccct tgggccagcc ggcacgcgcc
     2821 tgcttgcgct ccagggcttc cgatagaatg gccgcaaccc cctccgcgcc cgcggaagcg
     2881 agatccagaa agtggcgcgt cactcggatc aggccgcctg ggccggcgcg tagtcgcgcg
     2941 cgcccgcgct cagccgctcg atgcactcgg cgatatgggt ctcgtcgatc gtcagtggcg
     3001 gcaggacgcg gacgacattc tcgcccgccg cgaccgtcag cagcccgtga ttgtcgcgca
     3061 gatgggcgac gaagccgcga ctgtcggact tcagcttgat ccccagcatc agccccatgc
     3121 cgcgcacgcc ctcgaacaga tcgtcataat tcgggatcat ctgctccagc gcctggcgca
     3181 gccggtcgcc catcgcgcgg acatgctcga gaaagcccgg cgccagcacc acgtcgagca
     3241 cggcctggcc ggccgccatc gccagcggat tgccgccata ggtggagccg tgcgtgccga
     3301 tcaccatccc gcgcgcagct tcttcggtcg cgaggcacgc gccgagcggg aagccgccgc
     3361 caatgccctt ggcgatcgcc atgatgtcgg gcgtgatgcc atattgctca tgcgcgaaca
     3421 gcgtgcccgt ccgcgcaacg ccgctctgca cttcgtcgag caccagcatc aggcccttgt
     3481 cgtcgcagat gcgccggagg ccctgcatga actccttgct ggcaacgcgg atgccgcctt
     3541 cgccctgcac cggctcgacc aggaagcccg cggtcgtttc gtcgacagcg gcctcggccg
     3601 cttcgagatt gttgaactcg acgacggtga accccggcag cagcggctcg aagccggagc
     3661 gcatcttttc ctgatcggtt gcgctgatgc cgcccagcgt gcggccgtgg aacgcgttct
     3721 tgaacgtgat cagcgtcgat ttatgcgcgt cgccgccggc gaaatgatag cggcgcgcgg
     3781 tcttcattgc gcattccact gcctcggcgc ccgagttggt gaagaagacg gtgtccgcga
     3841 acgtgttgtc gaccagccgc tgcgccagcg cctcgccctg gggcgagccg tagaggttgg
     3901 agacgtgcat caaggtcgcc gcctggcgct ggatcgcctc gaccagatgc ggatggccat
     3961 ggccgagcag attgaccgcg atgccggcgg cgaaatcgag atagcgctcg cccttctcat
     4021 cgaaaagata cacgccctcg ccgcgcaccg gccgcacgcc gcagcgggga tagacgggca
     4081 tcaggggcgt gatcgacatg cgcggctcca gttccgtgaa tgcaaaaagg cgaccgcacc
     4141 ggccgcctga tgccgccggt atacgggacg cgcggaagcg aaacaacccc gccctcagga
     4201 gcgccggcgc gggcggaacg ccaaaatttt ccctggtgta ggaaggacac gcaagaaaag
     4261 agccccggat cgctccgggg ctccctcatg acatttctgc cttggcgtca gtagcgccaa
     4321 taaccgcgct ggccgtcgcg ctgttgatac tgcagccgct cctgcaactg gtccaggcgc
     4381 tgcatcagga tttcacgctc ccggccgtcc agaccgccag aggcgtaata gcgctgcgcg
     4441 acacgccaaa ggtcgcgatg ttcgaagccc aggcgctggg cctcgcccgg tgtgagcgtc
     4501 ccgcgcgcgc ggccgcgctg gatctgatag ccgatggcat cgaggcgctg gccgagccaa
     4561 ttgtggcggg tgaagcgctc gccattgcca tagccatagc cgcggtcccg ataacgatcg
     4621 ccatagcgct gatcgtaata gcgatcctga tagccacgat cgccgtaata ttgggccgaa
     4681 gccggcgccg cggcggccag cgccgaagcg gcgagcgcaa gcgaaacaat caccttcttc
     4741 atgactcact cctctctccg agtgagcccg acttaagcga ttcgtgctgg aacgacgctg
     4801 aacgcgtccg ttatcggccg ttaagccagg gcttcgccca ggaattgcac gatcgccgca
     4861 ttggcgcgcg catcggcgac ggcgttgtag agcacgcgcc ccggcacgtt tgcgcccgga
     4921 ttggtgaagc cgtgcacggt gtggccatag gcgtggagct gccagtcggc gcccgcttcg
     4981 gtcagctcgc gcgtgagacc gagcacgtca tcgggcggcg ccagcggatc gtcccagccg
     5041 tgcagcacca gcaccttcgc gcggatcggc ggttgcggcc caagctcagg ccgcgagaag
     5101 acgccgtgga ccgagatcgc gcctttcact tcgtcggtgc ccgtccgcgc gaggtcgagc
     5161 gcgcacagcc cgccaaagca atagccgatg atcgcaagtc tgcctggatc gacgccgtcg
     5221 agcgtctgcg caaaggccag cgcgtcctgc aactgccgcc gcagccgtgc gcgatcggca
     5281 agcagctcgt tcatcagcgc gaacgcctgc tcccccgggt cgcgcctgtc gcggccataa
     5341 tggtcgatga cgatgccgac atagccctcc ctcgcgagcg catcggcctt ggcctgttcg
     5401 agcgatgtcg gcccgcgcac cgtgggcgcg atcagcacgg cggggtgcgg ccccggcccg
     5461 accggccgcg acacataggc ttcgcagtcg agcgcgccgg cgcgataggg aatcatcgtc
     5521 atgccttgat cttccagccg ctgcgcagca ccgcaaagca gatcgagccg agcaccaggt
     5581 tcacgcccaa cacaacggcc atgccaattg ctacgggcga gtcggcatcg cccagaaagc
     5641 cgtatcggaa gcccgagatg atgtagaaaa agggattggc gtggctgacc gcacggaagg
     5701 tcggcgacag cgcctcgacc gaatagaaag tgccggaaag cagcgacagc ggcgcaacca
     5761 cgaaattggt cacggccgcg gcatgatcga atttc
//
LOCUS       DASQVK010000294         2980 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_398241,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000294 DASQVK010000000
VERSION     DASQVK010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2980)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2980)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2980
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_398241"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..756)
                     /gene="hpnD"
                     /locus_tag="VE567_06260"
     CDS             complement(<1..756)
                     /gene="hpnD"
                     /locus_tag="VE567_06260"
                     /EC_number="2.5.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010407804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016767 - geranylgeranyl-diphosphate
                     geranylgeranyltransferase activity [Evidence IEA];
                     GO_process: GO:0016117 - carotenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="presqualene diphosphate synthase HpnD"
                     /protein_id="HYZ48481.1"
                     /translation="MTSGGIPASLQAGVRRSSFYAGMRMLPKPEREAMFAIYAFCRAV
                     DDIADDVAGSREARSAELEAWRRDVDALYCGGPAGKAAMLESAVARFGLRREDMDAVI
                     DGMAMDVARDIRWPAWSELELYCDRVACAVGRLSVRVFGMEEEPGLALAHHLGHALQL
                     TNILRDIDEDAEIGRVYLPEEALAAAGVAMTTPEAVAADPRLDAACRSVAERARMHHR
                     RAAEILAVRPRGHLIAPRLMSAAYAPLLDRMEAT"
     gene            complement(753..1598)
                     /gene="hpnC"
                     /locus_tag="VE567_06265"
     CDS             complement(753..1598)
                     /gene="hpnC"
                     /locus_tag="VE567_06265"
                     /EC_number="2.5.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004311 - farnesyltranstransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="squalene synthase HpnC"
                     /protein_id="HYZ48482.1"
                     /translation="MDAAADLASGKGARDENFPVASWLLKAEHRAPIMSFYRFARAAD
                     DIADHPSAGEEEKLRLLDKMRRGARGFSDGAPEGLALHRAIGERGIPAMHAEELLDAF
                     VQDVTVRRYPDWDTLMAYCRLSAMPVGRFVLDVHGEDRASWPLSDALCAALQVINHLQ
                     DCGKDYRALNRVYLPLDLLAAEGASVEELGEARASPALRRAIAVLAERTQGLLAKSRP
                     FAAHLRSRRLAMEVAIIQELAEALTERLRRHDPLSERVHHRKLDAGMIALRAALGQLF
                     RGRSR"
     gene            complement(1599..2732)
                     /locus_tag="VE567_06270"
     CDS             complement(1599..2732)
                     /locus_tag="VE567_06270"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYZ48483.1"
                     /translation="MILIGGAAAAIWLYLVLLRHGFWLAREREDRDLPADPVQWPGVT
                     AIVPARNEADVIARSVGSLLMQNYPGRFRLILVDDSSEDGTAERARQARSRIPSGVDF
                     EILEAPPLPADWTGKLWAVSLGVEKAGPEPDYLWLTDADIEHAPDTLSSLVARAKAGG
                     LHLVSLMAKLHCRTLPERALVPAFVFFFQMLYPFGRVNRPGGPGAAAGGCMLVKRKAL
                     ERAGGIAAIRGALIDDCTLGALIKRGGPIWLGLTERSASIRPYRSFEAIAAMIARSAY
                     AQLRYSPLLLLGTLLGLGLVYLAPPLLALFGQGAARWLGLAAWAMMAVAFQPMLRFYR
                     VSALWGIALPAIAAFYAGCTLLSALAHRRGRGGMWKGRAQAGR"
     gene            complement(2729..>2980)
                     /locus_tag="VE567_06275"
     CDS             complement(2729..>2980)
                     /locus_tag="VE567_06275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dehydratase"
                     /protein_id="HYZ48484.1"
                     /translation="TGRRPPLTRIPRAPLFPLAWANERLARMRGREPFLTLDGLRMAA
                     HHMYFSSAKAERELGYAARPWPAAVADAIAWFRSAGMIG"
BASE COUNT          505 a         1108 c          965 g          402 t
ORIGIN      
        1 ggtcgcctcc atccggtcca gcagcggtgc ataggccgcc gacatcaggc gcggcgcgat
       61 cagatgtccg cgcgggcgca ccgccaggat ctcggccgcg cgccggtggt gcatccgcgc
      121 ccgctccgca acgctgcggc acgcggcatc gaggcgcgga tcggcggcaa cggcttccgg
      181 cgtcgtcatc gccacgcccg ccgcggccag cgcttcctcg ggcagataaa cgcgcccgat
      241 ttccgcatcc tcgtcgatgt cgcgcaggat gttcgtgagt tgcagcgcat ggccgagatg
      301 gtgcgcgagc gccagtcccg gctcctcctc catcccgaac acgcgcacgg agagccgccc
      361 gactgcgcag gcgacccggt cgcaataaag ctcaagctcc gaccaggcgg gccagcgaat
      421 gtcgcgcgcg acgtccatcg ccattccgtc gatcaccgcg tccatgtcct cgcgcctgag
      481 cccgaagcgc gccaccgcgc tttccagcat cgccgccttg ccggccggcc cgccgcaata
      541 gagcgcgtcc acatcgcgcc gccacgcctc cagctccgcc gagcgcgcct cgcggctgcc
      601 ggcgacatcg tcggcgatat cgtcgaccgc acggcaaaag gcatagatgg cgaacatcgc
      661 ctcgcgctcg ggcttcggca gcatccgcat cccggcatag aaggacgagc ggcgcacgcc
      721 tgcctgcagc gatgccggaa tccctcccga agtcatcgcg acctccccct gaagagctgg
      781 cccagggcgg cgcgcaatgc gatcatgccg gcatcgagct tgcggtgatg cacgcgttcg
      841 ctgagcggat cgtgcctgcg cagccgctcg gtaagcgcct cggcgagttc ctggatgatc
      901 gcaacctcca tcgccaggcg ccggctgcga agatgcgctg cgaacggccg gctttttgcc
      961 agcaggccct gcgtccgctc cgccagcacc gcgatcgcgc ggcgcagcgc gggcgacgcg
     1021 cgcgcctcgc caagctcttc gacactcgcg ccttccgcgg cgagcaggtc gagcggcaga
     1081 tagacgcggt tgagcgcgcg ataatccttc ccgcaatcct gcagatgatt gatgacctgc
     1141 agcgcggcgc aaagcgcgtc cgagagcggc cagctcgcgc ggtcctcgcc atgcacgtcg
     1201 agcacgaagc ggccgaccgg catcgccgag agccggcaat aggccatcag cgtgtcccag
     1261 tccgggtagc gccgcaccgt cacgtcctgc acgaatgcgt cgagcaattc ctcggcgtgc
     1321 attgcaggga tgccgcgctc gccgatcgcc cgatgcagcg ccagtccttc gggcgcgcca
     1381 tcgctgaagc cgcgagcgcc gcgccgcatc ttgtcgagca gacgaagctt ctcttcctcc
     1441 ccggcgctcg gatggtccgc gatatcgtcg gcggcgcgcg cgaaacggta gaaggacatg
     1501 atcggcgcgc ggtgctcggc cttgagcaac cacgaagcga cgggaaaatt ctcgtcgcgc
     1561 gcgcctttgc cggaagcgag atcggccgca gcatccattc agcgccccgc ctgggctcgc
     1621 cctttccaca tgccgccgcg tccccgccga tgcgccaagg ccgatagcaa ggtgcagccg
     1681 gcgtagaaag cagcaatggc gggcaaggcg atgccccaaa gggcagagac gcggtagaag
     1741 cgcagcatcg gctggaatgc gaccgccatc atcgcccagg cggccagccc cagccagcgc
     1801 gccgcgcctt gcccgaacag cgccagcaac gggggtgcca gatagaccag ccccagtccc
     1861 agcagcgtgc cgagcagcag cagcggcgaa tatcgaagct gcgcataggc cgagcgcgcg
     1921 atcatcgccg caatggcctc gaagctgcga tagggccgga tactcgccga gcgttcggtg
     1981 agcccgagcc agatcgggcc gccccgcttg atcagcgcgc ccagggtgca atcgtcgatc
     2041 agcgcccccc ggatcgccgc gatcccgccg gcgcgctcca gcgccttccg cttcaccagc
     2101 atgcagcccc cggccgcggc cccgggcccg cccggccggt tcactcggcc aaaggggtag
     2161 agcatctgga agaagaagac gaaggcgggg acgagggcgc gctccggcaa agtgcggcaa
     2221 tgcaatttcg ccatcagcga gacgaggtgc agcccacccg ccttcgcccg cgcgaccagg
     2281 ctgctaagcg tatccggcgc atgctcgata tcggcgtccg tcagccagag atagtcgggc
     2341 tccggccctg ccttctccac cccgagcgag acggcccaga gcttgcccgt ccagtccgcc
     2401 ggcagcggcg gcgcctcgag gatctcgaaa tccacgccgc tcggaatccg gctccgcgcc
     2461 tgccgcgctc gctccgccgt gccgtcctcg ctggaatcgt cgacgaggat caggcgaaac
     2521 cttcccggat aattctgcat gagcaggctg ccgaccgagc gcgcgatcac gtccgcttcg
     2581 ttgcgcgctg gtacgattgc cgtcacgccc ggccactgaa ccggatcggc cggcaaatcg
     2641 cggtcctccc gctcgcgcgc cagccagaag ccgtggcgca gcaggaccag gtaaagccag
     2701 atcgcggccg ccgcaccgcc gatcaggatc atccgatcat ccccgccgaa cgaaaccagg
     2761 cgatcgcatc cgccaccgcg gcgggccagg gccgggcggc atagccgagc tcgcgttcgg
     2821 ccttggccga gctgaaatac atgtggtgcg cggccattct gaggccatcc agcgtcagga
     2881 acggctcgcg cccacgcatc cgcgccagcc gctcattcgc ccaggccagg ggaaaaagcg
     2941 gcgcgcgggg aatccgggta agaggcggcc tccgtcccgt
//
LOCUS       DASQVK010000295         2594 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_335134,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000295 DASQVK010000000
VERSION     DASQVK010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2594
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335134"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..182
                     /locus_tag="VE567_06280"
     CDS             <1..182
                     /locus_tag="VE567_06280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010408548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase C-terminal
                     domain-containing protein"
                     /protein_id="HYZ48485.1"
                     /translation="AQTQLDAGEGNKAFLEAKLVTARFYFDRIAPRAFGLRKELEGGA
                     DALMALPPEAFARAA"
     gene            249..1214
                     /locus_tag="VE567_06285"
     CDS             249..1214
                     /locus_tag="VE567_06285"
                     /inference="COORDINATES: protein motif:HMM:NF013117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HYZ48486.1"
                     /translation="MLFGIHFIGANAQTARKLLLTLGFVLAVWAIGAVVRALLGWIGH
                     WTESPRFRFWSRQALALLLAAALILGILSIWFDNPAHLSTVFGLVTAGVAFALQRVIT
                     AVAGYFVILRGKTFNVGDRIVMGGVRGDVIALSFMQTKIMEMGEPPPVQSDAPAVWVH
                     SRQFTGRIVTVTNDKIFDEPVYNYTHHFPYIWDEIRLPVRYADDRTKAERILLDAAER
                     HAITPDRMDTEALAELDRRYSLTGLEIQPRVFWRITDNWLELAVRFLAHDHGTRRVKD
                     AMSRDILAALDEAGIGIASATYEVTGVPPITLKSPSREADRPLSA"
     gene            complement(1211..>2594)
                     /locus_tag="VE567_06290"
     CDS             complement(1211..>2594)
                     /locus_tag="VE567_06290"
                     /inference="COORDINATES: protein motif:HMM:NF020137.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005615 - extracellular space [Evidence
                     IEA];
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M10 family metallopeptidase C-terminal
                     domain-containing protein"
                     /protein_id="HYZ48487.1"
                     /translation="EGPNEINNWPVTYQGLTGLNGGVAFLNAAAAAAKASPQLANLPI
                     YGLSGAPRVAATTGDASQFVNIHPYAQHGDQPYDGLAARIGAKAIATKGMVITEAGYH
                     TGVGNKTWEGVDEATQAKLTLNLLADATKLGVAQTYLYQLTDLPDPTGVGADAHLGLF
                     DTSFRPKPVATAIHNLTSILADSGAAADSFQVHRLDYTLSNLPAHAQSLLLEKSNGEH
                     ALMLWAEPDIWNETTDKAIAVAPTASVVTFAGPVDVRVYDPLAGDQPIATYAHVTKVQ
                     VALSDHPVVIEVAGGTGAVTAPATYAPPITMTGTANADTLAGRGGDDTLKGMGGDDRI
                     DGGAGADIIIGGAGADRLTGGAGADLFTYKTAGESHGLARDTILDFNAADGDRIDLSA
                     IDANARLAGDQAFRLAGDHFTNAAGQLIQTDTRDGLLVQGDQNGDGRAEFAVLLQGVH
                     TPLSPDAFIL"
BASE COUNT          390 a          876 c          854 g          474 t
ORIGIN      
        1 ccgcgcaaac ccagttggac gcgggggagg gcaacaaggc ttttctcgaa gccaagctcg
       61 tcactgcccg cttctatttc gatcgcatcg ccccgcgcgc tttcggtctg cgcaaggagc
      121 tggaaggcgg cgccgacgcc ctgatggcgc tcccgcccga ggcgttcgct cgcgccgcct
      181 gagggggcgg gaactctccc ggcgcgatcc ggttactcgg cccatggtcg ggaagtgaaa
      241 gcgcggcggt gctgttcggg atccatttca tcggagcgaa tgcgcagacg gcgcgcaagc
      301 tgctgctgac gctcggcttc gtgctggccg tttgggcgat cggcgccgtc gtgcgcgcgc
      361 tgctcggctg gatcggccat tggaccgaaa gtccccgctt ccgcttctgg agccgccagg
      421 cacttgcgct cctgctcgcg gcggcgctga tcctgggcat tctctcgatc tggttcgaca
      481 atcccgccca tctgagcacc gtcttcgggc tggtgaccgc gggggtcgcc tttgcgctgc
      541 agcgggtgat cacggccgtg gccggctatt tcgtcatcct gcgcggcaag acgttcaacg
      601 tcggcgatcg gatcgtgatg ggcggcgtgc gcggcgacgt gatcgcgttg agcttcatgc
      661 agaccaagat catggaaatg ggcgagccgc cgccggtcca gtccgatgcg cctgccgtct
      721 gggtgcacag ccgccagttc accgggcgca tcgtcactgt caccaatgac aagatcttcg
      781 acgagccggt ctataattac acgcaccatt tcccgtacat ctgggacgag atccggctgc
      841 cggtccgcta tgccgacgat cggacgaagg ccgagcggat cctgctcgat gccgccgaac
      901 gccatgcgat cacgcccgac cgaatggaca ccgaagccct ggccgagctg gaccgccgct
      961 acagcctgac cggcctcgaa atccagcccc gcgtcttctg gcggatcacc gacaattggc
     1021 tcgaactcgc cgtgcgcttc ctcgcgcacg atcacggcac ccgccgcgtc aaggacgcca
     1081 tgagccggga tatcctggcc gcgctggacg aagccggcat cggcatcgct tccgccacct
     1141 acgaagtgac cggcgttcct ccaatcacgc tcaaatcccc cagccgcgag gctgaccgcc
     1201 cgttgtcggc ttagaggatg aacgcgtccg ggctgagcgg ggtgtgcacg ccctggagca
     1261 gcaccgcgaa ttcggcgcgg ccgtcgccgt tctgatcgcc ttgcaccagc aatccgtccc
     1321 tggtgtcggt ctggatcagc tggcccgccg cattggtgaa gtggtcgccg gccagcctga
     1381 acgcttggtc gcccgccagc cgcgcgttcg cgtcgatcgc cgacaggtcg atccggtcgc
     1441 catccgccgc attgaagtca aggatcgtat cgcgggccag gccgtgggac tcaccagcgg
     1501 tcttataggt gaagagatcg gcgccggcgc cgccggtcag ccgatccgca ccggcgccgc
     1561 cgatgatgat gtccgcgccc gcaccgccgt cgatccggtc gtcgccaccc atgcctttga
     1621 gcgtatcgtc gccgccccgg ccggcgagcg tgtcggcatt ggccgtgccg gtcatcgtga
     1681 tcggcggcgc atatgtggct ggcgcggtca ctgccccggt gccgcccgcc acctcgatca
     1741 cgaccggatg gtcggacagc gccacctgga ctttggttac gtgcgcatag gtggcgatcg
     1801 gctggtcgcc ggcaagcgga tcgtacacgc gcacatcgac tgggcccgca aacgtcacca
     1861 ccgatgccgt cggcgcgact gcaatggcct tgtccgtcgt ttcgttccag atgtccggct
     1921 cggcccagag catcagcgca tgctcgccat tggatttttc cagcagcagg ctctgcgcgt
     1981 gcgccgggag gttcgaaagc gtgtagtcga gccgatggac ctggaagctg tccgccgccg
     2041 cgccgctatc ggccagaatg ctggtgaggt tgtggatggc ggtcgccacc ggcttgggcc
     2101 ggaagctcgt gtcgaacagc ccgagatgcg catcggcgcc cacgcccgtg ggatcgggca
     2161 ggtcggtcag ctggtacaga taggtttgag cgacgccgag cttggtcgcg tcggcaagca
     2221 ggttgagcgt cagctttgcc tgggtcgcct catccactcc ttcccacgtc ttgttgccga
     2281 cgcccgtatg atagccggcc tcggtgatca ccatgccctt ggtcgcaatc gccttggcgc
     2341 cgatccgggc ggcgaggccg tcatatggct ggtcgccatg ctgggcatag gggtggatgt
     2401 ttacgaactg cgaggcatcg ccggtcgtcg ccgccacgcg cggcgccccg ctcaggccat
     2461 aaatggggag attggcgagc tgcgggctgg ctttcgccgc cgcagccgct gcgttcagga
     2521 acgcgacccc gccattaagc ccggtgaggc cctgataggt taccggccaa ttgttgatct
     2581 cgttcgggcc ctcg
//
LOCUS       DASQVK010000296         4192 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_303456,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000296 DASQVK010000000
VERSION     DASQVK010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4192
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303456"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..297
                     /locus_tag="VE567_06295"
     CDS             <1..297
                     /locus_tag="VE567_06295"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460245.1"
                     /note="catalyzes the formation of ribose 5-phosphate and
                     xylulose 5-phosphate from sedoheptulose 7-phosphate and
                     glyceraldehyde 3-phosphate; can transfer ketol groups
                     between several groups; in Escherichia coli there are two
                     tkt genes, tktA expressed during exponential growth and
                     the tktB during stationary phase; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HYZ48488.1"
                     /translation="VRDRLEAQGVGADVVSMPSWERFDAQPAAYRAELLPAGTLKVSI
                     EAGTTLGWERYTGPDGLRFGIDRFGASAPAADLFEHFGLTPDAIAPKILAALTS"
     gene            308..1318
                     /gene="gap"
                     /locus_tag="VE567_06300"
     CDS             308..1318
                     /gene="gap"
                     /locus_tag="VE567_06300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0019682 - glyceraldehyde-3-phosphate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HYZ48489.1"
                     /translation="MTVRVAINGFGRIGRLVARAMLERGETGLELVTINDLADAKSNA
                     WLFKRDSVHGKYPGEVAADGNDLVIDGKRIRVTAERDPAHLIHGELGVDLVLECTGFF
                     TDRASAEKHIAAGAKKVLISAPGKNVDLTVVFGVNDDKLTPEHKIVSNASCTTNCLAP
                     VAKVLNDSIGIERGLMTTVHAYTNDQKILDQIHSDLRRARAAAMSMIPTTTGAARAVG
                     EVLPELKGKLDGSAIRVPVPDVSLVDLTFTPKRDTSKEEVNALLKAASESGRLAGILD
                     YSDEPLVSIDLMHTPASSTVDSLETGVIDGKLVRVVSWYDNEWGFSNRMVDTAGAMAR
                     LG"
     gene            1366..1770
                     /locus_tag="VE567_06305"
     CDS             1366..1770
                     /locus_tag="VE567_06305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010402571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HYZ48490.1"
                     /translation="MELVERAFLSTALGVTGDARGIVKNGKNKRQVALLELGDWQAAT
                     AEIGADIPWQERRANLLVDWVDLPRRAGAVIRIGDAAQIETTMECDPCIRMEQVAPGL
                     MDALKPDWRGGVLGRVLIDGEIRVGDPIIIED"
     gene            1773..2951
                     /locus_tag="VE567_06310"
     CDS             1773..2951
                     /locus_tag="VE567_06310"
                     /EC_number="2.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011445614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HYZ48491.1"
                     /translation="MAYKTLDDMGDIRGKRVLVREDLNVPMAEGKVTDDTRLRAAAPT
                     VSELADRGAIVLILSHFGRPKVPSPEFSLAQLTKPFEAVIGRPVTYIDWEGDEAAVAA
                     LRSGDIAILENTRFFGGEEKNDPAVVERFARLGDLYVNDAFSAAHRAHASTEGLAHKL
                     PAFAGRQMEAELAALEKALGNPEHPVAAVVGGAKVSTKLDVLRHLVDKVDHLIIGGGM
                     ANTFLAARGVNVGKSLCEHDLTGTAEHILEAADRANCTVHLPYDVVVATEFRPNPPTR
                     TVNVHEVGADEMILDIGPAAVEALADVLKTCRTLVWNGPLGAFETPPFDAATVSLART
                     AAALTREGSLVSVAGGGDTVAALNQAGVADDFTFVSTAGGAFLEWMEGKELPGVAALG
                     "
     gene            3369..>4192
                     /locus_tag="VE567_06315"
     CDS             3369..>4192
                     /locus_tag="VE567_06315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose bisphosphate aldolase"
                     /protein_id="HYZ48492.1"
                     /translation="MNTADMAAKIAEGNGFIAALDQSGGSTPKALKGYGIEEGAWGSD
                     EEMFALIHAMRSRIITSPCFNGQKVIGAILFERTMDGQVDGKPVPQALMEKGVVPFIK
                     IDKGLEAEANGVQLMKPMPELDALLARAKGLGVFGTKERSVVNLANREGIAAIVKQQF
                     EVGAQVLAHGLVPIIEPEVNIKSPERAEADQILLEELLKALDAMPGADKVMLKLSIPA
                     RPGLFEPLVDHPRVLRVVALSGGYSRPEACAELARNRGMIASFSRALLEDLRHQMS"
BASE COUNT          743 a         1372 c         1418 g          659 t
ORIGIN      
        1 gtgcgcgacc ggctcgaggc gcaaggcgtc ggcgcggacg tcgtgtcgat gccgagctgg
       61 gagcggttcg acgcccagcc ggcggcgtat cgcgccgagc tgctgcccgc cggcacgctc
      121 aaggtgtcga tcgaggcggg aaccacgctt ggctgggaac gctataccgg gccggatggc
      181 ctccgcttcg gcatcgatcg gttcggtgcc tcggcgcccg cggccgatct tttcgagcat
      241 ttcgggctca cccccgacgc gatcgcgccc aagattcttg cggcgcttac atcataaggg
      301 agcagacatg accgtcagag ttgcgatcaa cggatttggc cgcatcggcc gcctcgtggc
      361 ccgcgcgatg ctggagcgag gcgagaccgg cctcgagctg gtcacgatca acgacctggc
      421 cgatgccaaa tcgaacgcct ggctgttcaa gcgcgactcg gtgcacggca aatatcccgg
      481 cgaggtcgcg gctgacggca acgatctggt gatcgacggc aagcgtatcc gcgtgactgc
      541 cgagcgcgat cccgcccacc tgatccatgg cgagctgggc gtcgacctcg tgctcgaatg
      601 caccggcttc ttcaccgatc gggcaagcgc tgaaaagcat atcgcggcgg gcgccaagaa
      661 agtgctgatc tccgccccgg gcaagaatgt cgatctgacg gtcgtctttg gcgttaacga
      721 cgacaagctg acgcccgagc acaagatcgt ctccaacgcc tcgtgcacca caaactgcct
      781 ggcgccggtc gccaaggtgc tgaacgacag catcggcatc gagcgcgggc tgatgacgac
      841 ggtccacgcc tacaccaacg accagaagat cctcgaccag atccattccg acctgcgccg
      901 cgcccgcgct gccgccatgt cgatgatccc gaccaccacc ggcgccgcgc gcgctgtcgg
      961 cgaagtgctg cccgagctca agggcaagct cgacggctcg gcgatccgcg tgccggtgcc
     1021 cgacgtcagc ctggtcgacc tgaccttcac gccgaagcgc gacacgtcga aggaagaagt
     1081 gaacgccttg ctcaaggccg catcggaaag cgggcggctg gccggcatcc tcgactattc
     1141 ggacgagccc ttggtctcga tcgacctgat gcacacgccg gcctcctcga ccgtcgacag
     1201 cctggagacg ggcgtgatcg acggcaagct ggtccgcgtc gtgtcctggt acgacaatga
     1261 atggggcttt tcgaaccgca tggtcgacac ggccggcgcg atggcgaggc tcggctgagc
     1321 gggacgctca aaggcatagc ccgcagggct tatcccggcg caccgatgga gctggtcgag
     1381 cgggcctttc tctcgaccgc cctcggtgtc accggggacg ctcgcggcat tgtcaaaaac
     1441 ggcaagaaca agcgccaggt ggcgctgctc gaactcggcg actggcaggc ggcgacggcc
     1501 gagatcggcg ccgatatacc ctggcaggag cggcgggcga acctgctcgt cgattgggtt
     1561 gacctgcccc ggcgcgccgg cgccgtcatc aggatcggcg acgcggcgca gatcgagacg
     1621 acgatggaat gcgatccctg catccgcatg gagcaggtcg cgcccggcct gatggatgcg
     1681 ctgaagcccg attggcgcgg cggcgtgctt ggccgggtgc tgatcgacgg cgaaatccgg
     1741 gtcggcgacc cgatcatcat cgaggactga gaatggctta caagacgctc gacgacatgg
     1801 gcgacatccg cggcaagcgc gtgctggtcc gcgaagacct gaacgtgccg atggccgagg
     1861 gcaaggtgac cgacgacacg cggctgcgcg ccgcggcgcc gaccgtttcc gagctggcgg
     1921 atcgcggcgc gatcgtgctg atcctgagcc atttcgggcg gcccaaagtg ccttcgcccg
     1981 aattctcgct ggcgcagctg accaagcctt tcgaggcggt gatcggccgg ccggtgacgt
     2041 acattgattg ggaaggcgac gaggcggccg tcgccgcgct ccggtccggg gacattgcga
     2101 tcctggagaa tacgcgcttc tttgggggcg aggaaaagaa cgatccggcc gtggtcgagc
     2161 gatttgctcg gctcggcgac ctctacgtca acgacgcatt ctccgccgcg caccgggcgc
     2221 acgcctccac cgagggcctc gcccacaagc tccccgcctt tgccggccgg cagatggaag
     2281 cggagctggc ggcgctcgaa aaggcgctcg gcaaccccga gcaccccgtt gcggcagtgg
     2341 tcggcggcgc gaaggtttcg accaagctcg acgtgctgcg gcacctcgtc gacaaagtcg
     2401 accatctgat catcggcggc ggcatggcga acactttcct cgcggctcgc ggcgtgaatg
     2461 tcggcaagtc gctgtgcgag catgatctca ccggcaccgc cgagcatatc ctggaagccg
     2521 cggaccgcgc caactgcacc gtgcatttgc cctatgacgt ggtggtcgcg accgagttca
     2581 ggccgaaccc gccgacccgc accgtcaacg tccatgaagt tggcgccgac gagatgatcc
     2641 tcgacatcgg ccccgccgct gtcgaggcgc tcgccgacgt gctcaagacc tgccggacac
     2701 ttgtctggaa cgggcccttg ggcgctttcg agacgccgcc attcgacgcc gccaccgtca
     2761 gcctcgcccg caccgccgcc gcgctcacgc gcgaaggctc gctggtctcg gtcgccggcg
     2821 gcggcgatac ggtcgccgcc ctcaaccagg ccggcgtggc cgacgacttc accttcgtct
     2881 cgaccgctgg cggcgcgttc ctcgaatgga tggaaggcaa ggaattgccg ggcgtcgcgg
     2941 cgctgggttg aaacgtggag atgtcgtgct cgttcgagcg ccgaacaggc cggcatccaa
     3001 gaagcggccc tgcgcggtca ttcaacgcga cgccaccttg agggatgacc tgcccaaggt
     3061 gacgatgtgt ccgcttgcgt ccgtgctcaa agggagcggc ggcagccggc cgcttgtcgc
     3121 accggacggt cgagatcgac tatgcctaca cgttcgaccg ggttcggatc ggggagacaa
     3181 tcgggcggct ggatgagtcg gcaatgcgtg cggtcgacaa agccctgcgg cgctggctcg
     3241 atctccgatc attgtctcgg aaccgcacaa agggcgatcc gttgcttgcc cagcctgcgc
     3301 gcgcgttgag atttcgcgcg catcccgcta cgcgcaggcg ccaacgacaa accgcatcag
     3361 gggacgatat gaacaccgcc gacatggctg cgaagatcgc tgaagggaac gggtttatcg
     3421 ccgcgctcga ccagagcggg gggtcgacgc ccaaggctct gaagggctac gggatcgagg
     3481 aaggcgcctg gggctccgac gaggaaatgt tcgcgctcat ccacgcgatg cgcagccgca
     3541 tcatcacctc gccctgcttc aacgggcaga aagtgattgg cgcgatcctc ttcgagcgca
     3601 cgatggatgg gcaggtggac ggcaagccgg tcccgcaggc gctgatggaa aagggcgtgg
     3661 tgcctttcat caagatcgac aagggcttgg aagctgaagc gaacggcgtc cagctgatga
     3721 agccgatgcc ggaactcgac gcgctgcttg cccgcgccaa ggggctgggc gtgttcggca
     3781 ccaaggaacg gtcggtggtc aatctcgcca atcgcgaggg catcgccgcg atcgtgaagc
     3841 agcaattcga ggtgggcgcc caggttctcg cgcacgggct ggtgccgatc atcgagcccg
     3901 aagtgaacat caagagcccg gagcgcgccg aggccgacca gatcctgctc gaagaactgc
     3961 tgaaggcgct ggacgcgatg ccgggcgcgg acaaggtcat gctgaagctg tctattccgg
     4021 cgcggcccgg cctgttcgag ccgctcgtcg atcacccgcg cgtcctccgc gttgtggcgc
     4081 tgtcgggcgg ctatagccgg cccgaggcct gcgcggagct cgccaggaac cgcggtatga
     4141 tcgcaagctt cagccgcgcg ctgctcgagg atttgcgcca ccagatgagc ga
//
LOCUS       DASQVK010000297         3560 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_176655,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000297 DASQVK010000000
VERSION     DASQVK010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3560)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3560)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3560
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176655"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2004
                     /locus_tag="VE567_06320"
     CDS             <1..2004
                     /locus_tag="VE567_06320"
                     /inference="COORDINATES: protein motif:HMM:NF017257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0030244 - cellulose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose synthase subunit BcsC-related outer
                     membrane protein"
                     /protein_id="HYZ48493.1"
                     /translation="DVIKLHTQVRGQLEVARAALGLSSAPAQAKEQLVQLAAQPDPTG
                     SIGADAIRTLGKAGDKQGAARAAQLASAANPGAEAQLLLAAALFDVGADDAAAAAMAR
                     AERGPLTPAQEQSLIALRAGSAVRAADRLNESGNQSAAYDALRPALANAPNDPATQLA
                     LSRLYQGSRQPTQAQRIAETVLARNPRDWEARRTAVDAALAAGDNARAETLANEAQML
                     QPGDSRGMLMKAKVARAKGETANARQLLAQAAAQREQELGRGEPKTERAQVASADNPF
                     AGTVTDVQNAALPLDAVSREIAEEARLARQENGPRIAGAPSFRSRSGTSGLGSLTELG
                     GSVEANGRLGNIPGRFSAQVSPITIDSGKATEGWAVRQFGTNAAFATAIPNRDTAQLG
                     AALTAGYQYRELVSADIGSSPLGFRTTNVVGGLEFAPKLTDNLRLRLRAGRRMVTDSV
                     TSYAGSKDPVTGQVWGGVTQTGGRGQLELGVGAGTAYLYGGYASLNGKNVASNTRHEA
                     GAGISYPLLRRGDSVLTSGLDVTYFAYDNNQNNFTFGQGGYFSPQNYVAVSLPVEYSS
                     HAGKLGYTVGGAIGYAHFREDPNLVFPNNPLLQAQLEAASRRDPNIPTHTPGQTKNGL
                     IGGARVELSYPLTEQMTLIGAARYDRAADFQETRVSVRLESRF"
     gene            2028..3038
                     /locus_tag="VE567_06325"
     CDS             2028..3038
                     /locus_tag="VE567_06325"
                     /inference="COORDINATES: protein motif:HMM:NF013438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 8"
                     /protein_id="HYZ48494.1"
                     /translation="MPRRAMLAGCLTCAAARRLRAAEIEWDVFKSRFLTGDGRILDTG
                     NRGISHTEGQGWGLLFAEHHDDPAAFERIYDWIHRNLRRPDDALHAWRYDPAAADPVS
                     DGNNAADGDLFIGMALSRAARRWRNALYAARATRIAQDIRRLLVREIGTRAVLLPGYE
                     GFEGSSAVVVNPSYYAIPAIRELADRDPSPVWQTLVDDGQALFAEARFGKWSLVPDWL
                     QLEIPSGKAAPAANWPPRFSFDAVRLPLYLNWGGCKPDLSFKSFALQFGDKLPAWVDL
                     VSNEVAPYIAPPGVQAVRMFATATVGDPLPTDFPTVASAPDYYSAALTMLVRLAWWEA
                     YR"
BASE COUNT          621 a         1211 c         1170 g          558 t
ORIGIN      
        1 gacgtcatca agctgcacac gcaggtccgc gggcagctcg aggtcgcccg cgcggcgctg
       61 ggcctgagca gcgcgccggc acaggcgaag gaacagctgg tgcagctcgc ggcgcaaccc
      121 gatccaaccg gaagcatcgg cgccgacgcc atccgcacgc tcggcaaggc cggcgacaag
      181 cagggcgcgg cccgcgccgc gcagcttgcc tcggcggcca accctggcgc cgaagcccag
      241 ctcttgttgg ccgcagcctt gttcgacgtc ggcgcggacg acgcggctgc cgccgccatg
      301 gcgcgcgccg aacgcgggcc cttgaccccg gcgcaggagc agagtctcat cgcgctgcgg
      361 gccggttccg ccgtacgcgc cgccgaccgg ctgaacgagt cgggcaacca gtccgcggcc
      421 tacgacgccc tacgccccgc actcgccaat gccccgaacg atccagcgac gcagcttgcg
      481 ctgtcgcggc tctaccaggg gtcgcgccag ccgacgcagg cgcagcggat cgccgagacc
      541 gtgctcgccc gcaatccgcg cgactgggag gcgcggcgca ccgccgttga cgccgccttg
      601 gctgcagggg acaacgcacg ggcagaaacg ctcgccaacg aagcgcaaat gctgcaacct
      661 ggcgacagcc gcggcatgct catgaaagcg aaggtggccc gggcgaaagg cgagaccgcc
      721 aatgcgcggc aactgctcgc gcaagcagcg gcccagcgcg agcaggagct gggccgcgga
      781 gagccgaaga cggagcgcgc ccaagtggcc tccgcggaca acccgttcgc aggcaccgtg
      841 accgatgtcc agaatgctgc gcttccgctc gatgcggttt cgcgcgagat cgccgaggaa
      901 gcgcggcttg cgcgccagga gaacgggccg cggatcgccg gcgcaccctc gttccgctcg
      961 cgctccggga cgtccgggtt ggggtcactc acggaacttg gcggctcggt cgaagcgaac
     1021 ggacgccttg gcaacattcc aggccggttt agcgcgcagg tcagcccgat cacgatcgac
     1081 tccggcaaag cgacggaggg ctgggccgtc agacagttcg ggacgaatgc ggccttcgcc
     1141 acggcaatac caaaccgcga caccgcccaa ttgggcgccg cgctgaccgc cggctatcag
     1201 taccgcgagc tggtctccgc ggatatcggc agctcgccgc tcggcttcag gacgacgaac
     1261 gtggtcggcg ggctcgagtt cgcgccgaag ctgaccgaca atcttcggct ccgcttgcgt
     1321 gccggccggc gcatggtcac ggacagcgtc acgtcctatg cgggctccaa ggatccggtc
     1381 accgggcagg tctggggcgg cgtcactcag accggcgggc gcgggcagct cgaactcggc
     1441 gtcggggccg gcactgcata cctgtacggt ggatacgctt cgctcaatgg taagaacgtg
     1501 gcgtcgaaca cgcggcacga agccggagcg gggatcagct atcccttact gcgccgcggc
     1561 gactcggtgc tcacgagcgg gctcgacgtg acctacttcg cctacgacaa caaccagaac
     1621 aacttcacct tcgggcaagg tgggtatttc agcccgcaaa actacgtggc cgtgagcttg
     1681 ccggtcgagt acagctccca tgcaggtaag ctaggctaca cggtcggcgg cgcgatcggc
     1741 tatgcgcatt tccgggagga ccccaacctg gtcttcccga acaatccgct gctgcaagcg
     1801 caactggaag ccgcgagccg tcgcgacccg aacattccga cacacacgcc aggccagaca
     1861 aaaaatggtc tgatcggcgg cgcccgggtc gagctcagtt acccgctcac cgagcaaatg
     1921 accctaatcg gggccgcccg gtacgacagg gcggcggact tccaggagac gcgcgtgtct
     1981 gtccgactgg agagccggtt ttgacgccgc aaggcgcggg cccaggcatg ccgcggcgcg
     2041 cgatgctggc cggttgcttg acctgcgccg ccgcgcgccg cctccgcgcg gcggagatcg
     2101 agtgggatgt cttcaagtcc cgctttctca ccggcgatgg ccgaatcctc gataccggca
     2161 atcgtggcat cagccataca gagggccagg gctggggatt gctgttcgcg gaacaccatg
     2221 atgatccggc cgccttcgaa cgcatctatg actggatcca ccgcaacctc cgtcgccccg
     2281 atgacgcgct gcatgcgtgg cgctacgacc cggcggcagc cgacccggta tcggacggca
     2341 acaatgccgc cgacggcgat ctattcatcg gtatggcgct gtcccgagcc gcccggcgtt
     2401 ggcgtaatgc actgtatgcc gcgcgcgcca caaggattgc ccaggacatt cggcgcctgc
     2461 ttgtacgcga gatcggcact cgggctgtcc tgcttcccgg gtacgagggt ttcgagggct
     2521 catctgctgt cgtcgtcaac ccgtcatatt acgcgattcc ggccatccgg gagcttgcag
     2581 atcgcgaccc ttctccggtc tggcagacac tggttgatga cgggcaagca ctgttcgctg
     2641 aggctcgctt cggcaagtgg agcctcgtcc cggactggct gcagttggaa atcccgagcg
     2701 gaaaggccgc gcccgctgct aattggcccc cacggttctc gttcgatgcg gtccgcctgc
     2761 cgctctactt gaactggggc ggctgcaagc ctgacctgag cttcaagtcc tttgctcttc
     2821 agttcggaga caagcttccg gcctgggtgg acctcgtctc gaacgaggtc gcaccgtata
     2881 tcgctccacc aggggttcag gccgtccgaa tgttcgcgac cgccaccgtc ggggaccctc
     2941 tcccaaccga cttccctaca gtcgcgagcg cccccgatta ctactcagcc gcgctgacca
     3001 tgctcgtgcg gctggcttgg tgggaagcat acagatgagc gcggctttca gaaggagtca
     3061 cgcaaccctc ttctgctcac gccgaagtgg aagctatgct gcatcgatcc cggttgagaa
     3121 gtggcgagtg tcggatcagg cactcgaacg agcggcggaa atcgcgccga gaccggtctt
     3181 aagcgattga actcgcgttt ccgttgagga catggtctgt gtcacgttat cgcgtctcgc
     3241 cgacccgctc tgtgcgtgga agtgtccagt ccgtcccgtt cgtcggccgt gctcccgcgc
     3301 atgctcgcga cgaatcgaac tgggagcatg cagactaccc agccgttgtg ggctggtgtg
     3361 agaaagcacg agagagtcgc caggcttccc ccagctgccg tggccctccg cgattaacaa
     3421 agtcgccaag gtgcggcgcc agtgccgcgg cccacctctt tcgggaccgc ggcggcgtca
     3481 gccgagcggg agatgcggtg ggtccgccgg ccgcgaatag gagcagccta ccggacgcta
     3541 gagcggaatc accctgaccg
//
LOCUS       DASQVK010000298         2044 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_50525, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000298 DASQVK010000000
VERSION     DASQVK010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50525"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..567
                     /locus_tag="VE567_06330"
     CDS             <1..567
                     /locus_tag="VE567_06330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010164316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYZ48495.1"
                     /translation="TTKAGFELIRRAKDRGMGVTCGITPAHLFLSDLAMSDFRTFAHL
                     SPPLRDEADRQAAIEAVRDGTIDVIASGHDPRGPEDKRLPFADSAPGAAGAETLLALS
                     LNLVRDGAITIERLFELLAGNPSRILGLEGGRLAPGAPADMILVDQDAPWRVDSGKMR
                     AAAGNTPFDKLPVQGRVLRLWKGGREIA"
     gene            complement(572..1894)
                     /locus_tag="VE567_06335"
     CDS             complement(572..1894)
                     /locus_tag="VE567_06335"
                     /inference="COORDINATES: protein motif:HMM:NF016895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HYZ48496.1"
                     /translation="MLRKPFLLRYAVGSAVLLSAAGNAAAITDAVKSATRAEKALAKD
                     QPAKAVADAEAAVAAEPGNANYRMLLGRAYLESGRFQSAAASFADVLALDPSRGGAAL
                     SLALARLGLGDRDGARAVLEAHGGAIPPSDRGLALALAGDPAAGVALLEEVVRNGGAD
                     AKARQNLALSYALAGRWPEAKLMASYDLDPQAASRRILEWSRFALDGQAPAQVAALLG
                     VQPGEDPGRPLALALNAPASAPVQVAQAAPPPPPVAMAAAPVALAVAVAETAPVAKPQ
                     SGIQFASRSEVAQAIASPRPVIVPQPVRPVRVQPVAASPRPNVAAQPMQPARLQPAAF
                     VQPLGGRFVVQLGAFSSQGAAEGAWSQAVARVDALASMTPSAATFAKDGRTLYRLSVG
                     GFATRVGAAAFCERLRARGGQCFVRESAGDAPLQWAKRPGGNTRLAAR"
BASE COUNT          308 a          747 c          715 g          274 t
ORIGIN      
        1 acgaccaagg ccggcttcga gcttatccgc cgtgccaagg atcgcggcat gggcgtcacc
       61 tgcggcatca cgcccgcgca tctgttcctt tccgacctgg cgatgtcgga tttccgcact
      121 tttgcgcacc tctcgccgcc cctccgcgac gaagcggacc ggcaggcggc aatcgaagcc
      181 gtgcgcgacg gcacgatcga tgtcattgca tcgggccacg atccgcgcgg acccgaggac
      241 aaacgcttgc cgttcgccga ttcggcgccc ggcgcggcgg gtgcggaaac gctgctcgcc
      301 ttgtcgctca acctggtgcg cgacggcgcg atcacgatcg agcggctgtt cgagctgctc
      361 gccggtaatc cgtcgcggat tctggggctg gagggcggca ggctcgcgcc gggcgcaccg
      421 gccgacatga tcctggtcga tcaggatgcc ccttggcgcg tcgattcggg caagatgcgc
      481 gctgccgccg gcaacacgcc gttcgacaag ctaccggtcc aaggccgcgt gctgcgcctc
      541 tggaaaggcg ggcgggaaat cgcctgagcg cttaacgcgc ggcgagtctg gtgttgccgc
      601 ccgggcgctt ggcccattgc agcggcgcgt cgcccgcgga ctcgcgcacg aagcactggc
      661 cgccgcgggc gcggaggcgc tcgcagaacg ctgccgcacc gacccgcgtc gcgaagccgc
      721 cgaccgacag gcgatagagc gtcctgccgt ccttggcgaa agtcgcggcg gacggcgtca
      781 tcgacgccag tgcatcgacc cgcgcgaccg cctggctcca ggcgccttcg gcggcaccct
      841 ggctgctgaa cgcgccaagc tggaccacga agcgtccgcc caagggctgc acgaaggcgg
      901 caggctggag gcgcgccggc tgcatcggct gggccgcgac attcggacgc ggcgaggccg
      961 caaccggttg cacgcgcacc ggccgcaccg gctgcggcac gatcaccggg cgcggcgaag
     1021 cgatcgcctg ggcgacttcg ctgcgggacg cgaactggat gccggattgg ggcttcgcca
     1081 ccggcgcggt ttcagcaacg gcgactgcca aggcaaccgg cgcggcggcc atggcgaccg
     1141 ggggcggcgg cggcgcagcc tgggcgacct gcaccggcgc tgacgccggc gcgttcagtg
     1201 ccagcgcgag cggccgaccg ggatcctcgc ccggctgcac gcccagcagc gccgcgactt
     1261 gcgccggcgc ctggccgtcg agcgcgaagc gcgaccattc gagaatgcgc cgcgatgccg
     1321 cttgcgggtc aagatcgtag gacgccatca atttggcttc gggccagcgc ccggccagcg
     1381 cataggaaag cgcgagattc tgccgcgcct tcgcgtcagc gccgccgttg cggacgacct
     1441 cttcgagcag cgccacgccc gcggccggat cgccggccag cgcgagcgcc aggcctcggt
     1501 cgctcggcgg gatcgccccg ccatgcgctt cgagcaccgc acgcgcgcca tcgcgatcgc
     1561 ccaggccaag ccgggcgagc gcgaggctca gcgcagcgcc gccacgcgag ggatcgagcg
     1621 ccagcacatc ggcgaagctc gccgctgccg actggaagcg gccgctttcg agataggcac
     1681 ggcccagcag catccggtaa ttggcgttgc ccggctcggc agcgaccgcc gcttcggcgt
     1741 ccgcaacggc cttggccggc tgatccttgg cgagcgcttt ctcggcgcgc gtagccgact
     1801 tcacggcatc cgtgatcgcg gcggcattcc cggccgccga gagcaacacg gcggagccca
     1861 ccgcatagcg cagcagaaaa ggcttacgca gcatctttgg tccctacccg cttcgccttg
     1921 gcgaccatct cgtcgagacc cggcaggccc gcgagcatcg catccagcgc ttccgtcacc
     1981 agccgctgcg acgagcggtg ctgcagggcc gaagcaagcc gcagccgcaa atgccgttca
     2041 tcgt
//
LOCUS       DASQVK010000299         3567 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_240098,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000299 DASQVK010000000
VERSION     DASQVK010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3567
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240098"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..87)
                     /locus_tag="VE567_06340"
     rRNA            complement(<1..87)
                     /locus_tag="VE567_06340"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            complement(372..1391)
                     /locus_tag="VE567_06345"
     CDS             complement(372..1391)
                     /locus_tag="VE567_06345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007012014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucuronic acid decarboxylase family
                     protein"
                     /protein_id="HYZ48497.1"
                     /translation="MHLERRVLVTGGAGFLGSHLCDRLIASGCHVMCVDNYFTGTRRN
                     IAHLLDHPNFELVRHDITFPLYVEVDEIYNLACPASPIHYQRDPVQTTKTSVLGAINM
                     LGLAKRLGAKIFQASTSEVYGDPTVHPQPEDYWGHVNPIGSRSCYDEGKRCAETLFFD
                     YMRQHRLQIKVARIFNTYGPRTHPRDGRVVSSFIVQALTGQDITVFGEGQQTRSFCYV
                     DDLIEGFVRLMDTPRAVVGPVNLGNPGEFTILELAEKVIALTGTRSKIVYRPLPLDDP
                     RQRRPDIAYAKQVLGWSPTVSLDQGLRRTIPYFEKLLASLPPGMLAQNVERLKAGVDV
                     GGAGA"
     gene            complement(1547..2548)
                     /locus_tag="VE567_06350"
     CDS             complement(1547..2548)
                     /locus_tag="VE567_06350"
                     /inference="COORDINATES: protein motif:HMM:NF009036.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HYZ48498.1"
                     /translation="MFQSFYLSRRWLPWAYPGAALILFATWYKVELDVKINEWFGDFY
                     NLIQKALSRSETITLAEYMGHLATFGYIAGLYVTVAVITDFFIKHYVFRWRTAMTDYY
                     AANWHAVRDIEGASQRVQEDTMRFARLVEGLGVSFMRSVMTLFAFLPILWTLSEKITE
                     LPWIGPVSQALVWVAIVFALAGTVLMAVIGFKLPGLEFQNQRVEAAFRKELVYGEDDS
                     QRADPARFSALFADVRRNYFRLFFHYMYFDVARYAYLQFGVLVPYIALGPTLVTGAVT
                     LGVMQQIVRAFGRVESSFQYLVNSWTTIVELISVYKRLRAFQRRIGAPRRATKDASP"
     gene            2631..2795
                     /locus_tag="VE567_06355"
     CDS             2631..2795
                     /locus_tag="VE567_06355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48499.1"
                     /translation="MLYETWESHEDVVKLQVHRPYRQAWHAALPEILQAERDISIWEP
                     VRADRRQHSA"
     gene            complement(2803..3186)
                     /locus_tag="VE567_06360"
     CDS             complement(2803..3186)
                     /locus_tag="VE567_06360"
                     /inference="COORDINATES: protein motif:HMM:NF037170.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYZ48500.1"
                     /translation="MAAALRIGSIVIRCYEFELMFAFWRQALRYEPREPPRAGWVVLR
                     DPAGHGPNLSLDKCPERRVGKRSRLHLDLYADDREAEVERLVSLGAVRYPWRYKPGDD
                     FVVLQDPDDNLFCVVQKASAPVPGD"
     gene            complement(3205..>3567)
                     /locus_tag="VE567_06365"
     CDS             complement(3205..>3567)
                     /locus_tag="VE567_06365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48501.1"
                     /translation="EMTGGHATADVAVKAGVGAAAGLAGAAAGAEIGAIAGSVVPGIG
                     NAVGFVAGAVVGGAVGYIGSELTETETGKAITGAVGDAVDAGIDAVKDAGAAVSDAVD
                     SGIDAVKDVGSAISDLFS"
BASE COUNT          678 a         1203 c         1129 g          557 t
ORIGIN      
        1 actaagggcc gaaaccctcc gtgcgacttg catgtgttaa gcatgccgcc agcgttcgct
       61 ctgagccagg atcaaactct caggttcatc cgcagcctag acctaagccc aaaccacaaa
      121 cgaacagacc ccaaccataa aacactagct ctctacacgc cgacgccatc cccaccatca
      181 gacccagccg cctccccata caggacaaac aaccgcctca cagcaggacg ccgccaacgc
      241 atcctttcct tactctcaga ttcgcttgtc gaaagaacaa aacagaagga caaccccgct
      301 catcacaggg ccacacccac cgtctcacat caaggagccc cggagcaccg tagcgcgccg
      361 ggaggacata cctaggcgcc cgcgccgcct acgtcaaccc cggctttcaa tctttccaca
      421 ttctgcgcca gcatccccgg cgggagcgag gccagcagct tttcgaaata ggggatcgtc
      481 cgccgcaggc cctggtcgag gctcaccgtc ggcgaccagc cgaggacctg cttggcatag
      541 gcgatgtccg gccgccgctg ccgcggatcg tccagcggca gcggccggta gacgatcttc
      601 gagcgcgtcc cggtcagcgc gatcaccttc tcggccagtt cgaggatcgt gaattcgccg
      661 ggattgccca ggttcaccgg ccccaccacc gcccgcggcg tgtccatcag ccgcacgaag
      721 ccctcgatca ggtcatcgac gtagcagaag gagcgcgtct gctgcccctc gccgaagacg
      781 gtgatgtcct gcccggtcag cgcctggacg atgaagctcg acaccacgcg gccgtcgcgc
      841 ggatgggtcc gcgggccgta ggtgttgaag atccgggcca ctttgatctg cagccggtgc
      901 tggcgcatgt agtcgaagaa gagggtctcg gcgcagcgct tgccctcgtc atagcaggag
      961 cgcgagccga tcgggttcac gtggccccag tagtcctcgg gctgcgggtg cacggtcggg
     1021 tcgccataga cctcgctggt cgaggcctgg aagatcttgg cgccgaggcg cttggccagg
     1081 cccagcatgt tgatggcacc gagcacgctg gtcttggtgg tctgcaccgg gtcacgctgg
     1141 tagtggatcg gcgaggccgg gcaggcgaga ttgtagatct cgtccacctc cacgtagagc
     1201 gggaaggtga tgtcgtggcg gaccagctcg aaattcgggt ggtccagcag atgggcgatg
     1261 ttgcgccggg tcccggtaaa atagttgtcc acgcacatga cgtggcagcc ggacgcgatc
     1321 agacgatcgc agaggtgcga ccccaggaag cccgcgcctc cagtgaccag aacacgacgc
     1381 tcgagatgca aggaccgacc cttcttccaa accgggacag ctttaccccc gaactgccca
     1441 gacaatccag catccagaaa gcgagggctc ggcgcgtgga ggtcgctccc cgcctcgagc
     1501 aagccgccga ccaggatccg cgcggggaag ggatggccgc ttggccttac ggagacgcgt
     1561 ccttcgtcgc acggcgcggt gccccgatgc ggcgctggaa cgcgcgcagc cgcttataca
     1621 ccgagatcag ctcgacgatc gtggtccagc tgttcacgag gtattggaag gaactctcga
     1681 cccggccgaa ggcgcggacg atctgctgca tgaccccgag cgtgacggcg ccggtcacca
     1741 gggtcgggcc gagcgcgatg tagggaacca gcaccccgaa ctgcaggtag gcgtatctgg
     1801 ccacatcgaa atacatgtag tggaagaaca ggcgaaagta gttgcgccgc acgtcggcga
     1861 acagggcgct gaaccgcgcc gggtcggcgc gctggctgtc gtcctcgcca tagaccagct
     1921 ccttgcggaa cgccgcctcg acgcgctggt tctggaactc cagcccgggc agcttgaacc
     1981 cgatcaccgc catcagcacg gttcccgcca gggcaaacac gatcgcgacc cagaccagcg
     2041 cctggctgac cggaccgatc cagggcaact cggtgatctt ctccgacaac gtccagagta
     2101 tcggcaggaa ggcgaacaag gtcatgacgc tgcgcatgaa gctgacgccg agtccctcca
     2161 ccagccgggc gaaccgcatc gtgtcttcct ggacacgctg cgaggcgccc tcgatgtcgc
     2221 ggacggcgtg ccagtttgcc gcgtagtagt cggtcatcgc cgtgcgccag cggaacacgt
     2281 aatgcttgat gaagaagtca gtgatgacgg caacggtcac gtagagaccg gcaatatagc
     2341 cgaacgtcgc caagtgcccc atgtattcgg cgagggttat ggtttcggat cggctcagcg
     2401 ccttctggat caggttgtag aagtcgccga accattcatt gatcttgacg tcgagttcga
     2461 ccttgtacca ggtcgcgaac aggatcagcg cggcacccgg ataggcccat ggcagccagc
     2521 ggcgcgacag atagaaggac tggaacacgg tcagtcatgt accggcgaat ggccggtttg
     2581 catagtttcc cctcccggcg ccttcgccat cggccggaag ggatcgcttc atgctctacg
     2641 agacctggga gagccatgag gacgtggtga aactccaggt gcatcggcca tatcgccagg
     2701 cctggcacgc cgcgcttccc gagatcctgc aggccgagcg ggacatctcc atctgggaac
     2761 cggtccgcgc ggaccgacgc cagcactcgg cgtgagcggg cctcagtcgc cagggacggg
     2821 ggccgaagcc ttctgcacga cgcaaaacag gttgtcgtcc ggatcctgca ggaccacgaa
     2881 gtcgtcgccg ggcttgtagc gccagggata gcggaccgcg ccgagcgata cgagccgctc
     2941 cacttcggcc tcccgatcgt ccgcgtagag atcgagatgc agccggcttc gcttgccgac
     3001 gcgacgctcg gggcacttgt ccaaggaaag gttcggcccg tgtccggccg ggtcgcggag
     3061 cacgacccaa cctgctcggg gaggctcgcg cggttcgtag cggagcgcct gccgccagaa
     3121 cgcgaacatg agctcgaact cgtagcaacg gatgacgatg gacccgatgc gcagtgcggc
     3181 cgccatggcg gacgggccgg cgatctagct gaatagatcg ctgatcgccg agcccacatc
     3241 cttgacggcg tcgatgccgc tatcgaccgc gtcgctcacc gccgcgcccg cgtccttgac
     3301 ggcgtcgatg ccggcatcga ccgcgtcgcc gacggcgccg gtgatcgcct tgccggtctc
     3361 ggtctctgtc agctcgctgc cgatatagcc caccgcgccg ccgacgacgg cgcccgccac
     3421 gaagccgacc gcgttgccga tgccgggcac gaccgagccc gcgatggcgc cgatctcggc
     3481 gccggccgcg gcacccgcga gcccggcggc ggcgccgacc ccggccttga ccgcgacgtc
     3541 cgcggtcgcg tggccgccgg tcatctc
//
LOCUS       DASQVK010000300         3136 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_114496,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000300 DASQVK010000000
VERSION     DASQVK010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3136
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114496"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..149
                     /locus_tag="VE567_06370"
     CDS             <1..149
                     /locus_tag="VE567_06370"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013039314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYZ48502.1"
                     /translation="SYRYLIESIRRFPDMVAFERMIQDAGFVQTHVEPMLGGLVAIHS
                     GWKI"
     gene            150..1682
                     /gene="ubiB"
                     /locus_tag="VE567_06375"
     CDS             150..1682
                     /gene="ubiB"
                     /locus_tag="VE567_06375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017180990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016709 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen, NAD(P)H as one donor, and incorporation
                     of one atom of oxygen [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-polyprenylphenol 6-hydroxylase"
                     /protein_id="HYZ48503.1"
                     /translation="MASTATHLLRLLKWGRTLARHGALRGIERDPMTPPVVRRLVKLA
                     RFGARVPATPEYAHAFEALGPAAIKFGQALATRPDLVGPEAATDLLRLQDDLPPAPFE
                     EIRKAIEQALGKPIDALFRSIDPEPVGAASIAQVHRAVTSDGREVAVKVLRPGIEEEF
                     AKATETYEWAAAQAEAFGSELQRLRPRLVIATFRQWTARELDLRREAASASELAQAME
                     AEPGYCVPAIDWQRTARRVMTLEWIDGIKVSRRDELIAAGHDVRALAARLVRAFLRQA
                     ISEGFFHADMHQGNLLVRPDGTIVAIDFGIMGRIDRRARLWLAEILYGLITGNYERVA
                     EIHFEAGYVPPHHNIAEFTTALRAVGEPIRGLPVKDISVGNMLDGLFAITRDFDMPTQ
                     PHLLLLQKTMVMVEGVAQALDPDINMWETAAPYVREWIRAELGPEAWTADRIIEFGRT
                     IALIPDLIRRLDHQLPKPGAAPPPPPLAHVAVVRLESGWKYIGIAIVAAAVGSAATLL
                     LT"
     gene            1687..2874
                     /gene="coaBC"
                     /locus_tag="VE567_06380"
     CDS             1687..2874
                     /gene="coaBC"
                     /locus_tag="VE567_06380"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012051053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015939 - pantothenate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HYZ48504.1"
                     /translation="MTGKRILLIVGGGIAAYKACELVRLIRKAGMSVRCVLTAGGAQF
                     VTPMTLAALSEQPVHTSLWDLKDEAEMGHIQLSREADLVVVAPATADLLARMAAGIAD
                     DLATTLLLATDKPVLAAPAMNVRMWLHAATRRNVERVRADGVTVLEPDEGSMACGEYG
                     PGRLPEPEAIFAAITDRLSLPSGSLAGKHVIVTAGPTHEPIDPVRYLGNRSSGKQGFA
                     IAEALARRGARVTLVSGPVQLPTPAGVTRIDVETAREMAAAVEAALPADAAVLVAAVA
                     DWRVEPNGAKIKKQAGGAPPALALTENPDILAGLGSDPRRPELLIGFAAETENVVENA
                     KAKRARKGADWIVANDVSGDVMGGADNRVHLVTEAGVEDWESMPKEKVAALLADRIAD
                     ALA"
     gene            2861..>3136
                     /gene="dut"
                     /locus_tag="VE567_06385"
     CDS             2861..>3136
                     /gene="dut"
                     /locus_tag="VE567_06385"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012051052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004170 - dUTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006226 - dUMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0046081 - dUTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HYZ48505.1"
                     /translation="MHWPEIAIRLKRLPHGENLPLPAYATAHAAGLDVVSAEDLLLAP
                     GARHAVATGFAIAIPDGYEVQVRPRSGLALKHGVTCLNTPGTIDADYR"
BASE COUNT          514 a         1056 c         1052 g          514 t
ORIGIN      
        1 aaagctatcg ctatctgatc gagtccatcc gccgctttcc cgacatggtg gcgttcgagc
       61 ggatgatcca ggacgccggc ttcgtgcaga cccatgtcga gccgatgctg ggcgggctgg
      121 ttgcgatcca ttcgggctgg aaaatctaat tggcctctac cgccacgcac ctgcttcgtt
      181 tgctcaaatg gggtcgcacc ctggcgcgcc atggcgcgct tagggggata gagcgcgatc
      241 cgatgacccc gccggtcgtc cggcggctgg tcaagctggc ccggttcggc gcgcgggtgc
      301 ctgccacccc cgaatacgcg catgccttcg aggcgctggg gcccgccgcg atcaaattcg
      361 gccaggcgct ggcgacccgg cccgatctcg tcggtcccga agccgctacc gacctgcttc
      421 gcttgcagga cgatctgccg cctgctccct tcgaggaaat ccgtaaagcg atcgagcagg
      481 cgctcggcaa gccgatcgac gcgctgttcc gctccatcga tcccgagccg gtcggcgccg
      541 cctccatcgc ccaggtgcac cgcgccgtca ccagcgacgg tcgcgaggtc gcggtaaaag
      601 tgctgcggcc gggcatcgag gaggaattcg ccaaggcgac tgaaacctat gaatgggcgg
      661 cagcacaggc cgaggccttc ggcagcgagc tgcagcggct ccggccccgg ctggtcatcg
      721 ccacgttccg ccaatggacc gcacgcgaac tggacctgcg gcgcgaagcg gcctcggctt
      781 ccgagctcgc tcaggcgatg gaggccgagc ccggctattg cgtgcccgcg atcgactggc
      841 agcgcaccgc gcggcgggtg atgacgctcg agtggatcga cggcatcaag gtctcgcggc
      901 gcgacgaact gattgcggcc ggtcatgacg tgagggcgct cgccgcgcgt ctcgtccgcg
      961 cgtttctgcg ccaggcgatt tcggaggggt tcttccacgc cgacatgcac cagggcaatc
     1021 tgctggtgcg gccggacgga acgatcgtcg cgatcgattt cggcataatg ggccggatcg
     1081 ataggcgcgc gcggctctgg ctggcggaaa tcctctacgg cctcatcacc ggcaattacg
     1141 aacgcgtggc cgaaatccat ttcgaggcgg gctatgtgcc gccacaccat aatatcgcgg
     1201 agttcacgac cgcgctgcgc gccgtgggcg agccgatccg cggcctgccg gtcaaagaca
     1261 tttcggtcgg caacatgctc gacggcctgt tcgcgatcac gcgcgatttc gacatgccga
     1321 cccagccgca tttgctactg ctgcaaaaga cgatggtgat ggtggaaggg gtggcgcaag
     1381 cgctcgatcc agacatcaac atgtgggaga ccgccgcgcc ctatgtgcgc gaatggatcc
     1441 gcgcggaact gggccccgaa gcctggacgg ccgaccggat catcgagttc ggccgcacga
     1501 ttgcgctcat acccgacttg atccgccgcc tcgatcacca gctccccaaa cccggtgccg
     1561 ccccgccccc gcccccgctc gcccatgtcg cggtggtccg gcttgaatcc ggctggaaat
     1621 atataggcat cgccatcgtc gcggcggcgg ttggttcggc ggccacgctg ctgctaacgt
     1681 gatgcgatga ccggcaagcg catccttctc atcgtcggcg gcgggatcgc ggcctataag
     1741 gcgtgcgagc tggtgcggct gatccgcaag gcggggatga gcgtgcggtg cgtgctgacc
     1801 gcgggcggcg cgcagttcgt gacgccgatg acgctcgcgg cgctctccga gcagccggtc
     1861 cataccagcc tttgggacct caaggacgaa gccgagatgg gccatatcca gctcagtcgc
     1921 gaggcggacc tggtcgtcgt cgcgcccgcc acggccgatc tgctggcgcg catggccgcc
     1981 ggcattgccg acgacctcgc gaccactttg ctgcttgcga ccgacaagcc cgtgctcgcc
     2041 gcgcccgcca tgaacgtgcg gatgtggctc cacgccgcca cgaggcgcaa tgtcgagcgg
     2101 gtgcgcgcgg atggcgttac ggtgcttgag ccggacgaag gctctatggc gtgcggcgaa
     2161 tatggcccgg gccggttgcc ggagcccgag gcgatctttg cggcgataac ggatcggctc
     2221 tcgcttccgt ccggcagctt ggcgggaaag cacgtcatcg tgaccgccgg cccgacgcat
     2281 gagccgatcg accccgtccg ttatctcggc aaccgctcgt cggggaaaca aggttttgcg
     2341 atcgctgaag cgctggcgcg gcgcggcgcg cgggtcactt tggtgagcgg tcccgtccag
     2401 ctgccgacgc ccgcaggagt gacgcgcatc gatgtcgaga cggcgcgcga aatggcggcg
     2461 gcggtcgaag cggcgcttcc cgccgatgcc gctgtgctcg tcgccgcggt cgcagactgg
     2521 cgcgtcgagc cgaacggcgc caagatcaag aagcaagccg gcggtgctcc gcccgcgctc
     2581 gcgctcacgg aaaatccgga cattctcgcc ggcctgggaa gcgatccgcg ccggccggaa
     2641 ttgctgatcg gcttcgctgc cgaaaccgaa aacgtcgtcg agaacgccaa agccaagcgc
     2701 gcgcgcaagg gggcggactg gatcgtcgcc aatgatgtgt ccggcgatgt gatgggcggc
     2761 gccgacaatc gcgtccatct cgtcaccgag gctggagtcg aggattggga gtccatgcca
     2821 aaggagaagg tcgccgcgct attggccgac aggatcgccg atgcactggc ctgaaatcgc
     2881 aatccggctg aagcgcttgc cgcacggcga aaaccttccg cttcccgcct atgcgactgc
     2941 ccatgccgcc ggactggacg tggtctcggc cgaagacttg ctgcttgcgc ccggcgcgcg
     3001 ccacgcggtc gcaaccggct tcgcaatcgc catcccggac ggatatgagg tccaggtccg
     3061 tccgcgctct ggcctcgcgc tcaagcacgg cgtcacctgc ctcaatacgc ccggcacgat
     3121 cgacgccgac tatcgc
//
LOCUS       DASQVK010000301         3223 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_436047,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000301 DASQVK010000000
VERSION     DASQVK010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_436047"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..989)
                     /locus_tag="VE567_06390"
     CDS             complement(<1..989)
                     /locus_tag="VE567_06390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine kinase"
                     /protein_id="HYZ48506.1"
                     /translation="MNPATYDVVAIGNAIVDILAQAEDSFIAEIGVAKGSMQLIFSPE
                     EADALYAKMGPGREVSGGSAANTAAGIAALGGRCAFVGQVADDELGRIFAHDLRAAGV
                     HFEMPARPGQPTTARCLIFVTPDGQRTMNTFLGASQFLPESALDLDLIRSSAILYLEG
                     YLWDPAEPRAAMRKAIEVARSAGRRVAFTLSDVFCIARHGDDFRKMIADGLIDILFAN
                     EQELLALCEHESFEQAVEHMHGQVPLLVVTRSEKGAMALQGSERVEVAAEPIEALIDT
                     TGAGDMFAAGFLHGQAQGRSLQDSLRLGAICAAEIIQHYGARAEVDLKELAAA"
     gene            1190..1468
                     /locus_tag="VE567_06395"
     CDS             1190..1468
                     /locus_tag="VE567_06395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48507.1"
                     /translation="MTPPVISTSGLERVLGHPARALVALFGAPELDVREDRARKLQFA
                     GPICVLDAYLYPKDGSEPVVTYVDARQPDGRDIDRASCVAALIANRRR"
     gene            complement(1513..2988)
                     /gene="pyk"
                     /locus_tag="VE567_06400"
     CDS             complement(1513..2988)
                     /gene="pyk"
                     /locus_tag="VE567_06400"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HYZ48508.1"
                     /translation="MVSFVAPRSRKVRILATLGPASRSPEMIEKLYRAGADAFRVNMS
                     HGAQSGHAQTIENIRALEKTLGRPTTILVDLQGPKLRVGTFAEGMALLKTGQEFVLDR
                     DPAPGDAGRVCLPHRELFIALEEGARLLLDDGKLVLRVTGATHDRIETKVEVGGALSN
                     NKGLNVPDVVVPLAALTEKDRSDLAFALDLGVDWVALSFVQRPEDVAEARRLIQGRAS
                     LLAKIEKPAALERLEPILELADAVMVARGDLGVELPPQDVPPMQKRIVETARRMGRPV
                     VVATQMLESMIKSPTPTRAEVSDVATAIYDGADAVMLSAESAAGDWPEESVAMMNAIA
                     NAVERDPGYAARVHFTETRPDPTTADALAEAAGSIASTVSAAAIICFTLSGSTARRVA
                     RERPSVPLLVLTPKLETARRLGLLWGVHAVRTRDVESFEEMIAKSKRMALRHNIAKAG
                     DRVIVIAGVPFGTPGSTNVLHVARITGDELKRHNQERRPPD"
     gene            3064..>3223
                     /locus_tag="VE567_06405"
     CDS             3064..>3223
                     /locus_tag="VE567_06405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016746781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1244 domain-containing protein"
                     /protein_id="HYZ48509.1"
                     /translation="MVEYDDATAAAAFRRLVKHLQARTDAQNVDLMGLAGFCRNCLGD
                     WLAEASGGG"
BASE COUNT          491 a         1116 c         1075 g          541 t
ORIGIN      
        1 ttcgccgcgg ccagttcctt caggtcgact tctgcacgcg cgccataatg ctggatgatc
       61 tccgccgcgc agatcgcgcc gaggcggagc gaatcctgga ggctcctgcc ctgggcctgg
      121 ccgtggagga agcccgccgc aaacatgtcg cccgcgccgg tggtgtcgat cagcgcctcg
      181 atcggctcgg cagcgacttc gacgcgttcc gatccctgca gcgccatcgc gcccttttcg
      241 ctgcgcgtga ccacgagcag aggcacctga ccgtgcatat gctcgaccgc ctgctcgaaa
      301 ctctcatgct cgcagagcgc cagcagctcc tgctcattgg cgaagaggat gtcgatcagc
      361 ccgtcggcga tcattttgcg gaaatcgtcg ccgtggcgcg cgatgcagaa cacgtccgaa
      421 agcgtgaagg ccacgcgccg gcccgccgac cgcgccacct cgatcgcctt gcgcatcgcg
      481 gcgcggggct ccgccgggtc ccagagatag ccttccagat agaggattgc gctcgaccgg
      541 atcaggtcga ggtccagcgc gctttccggc aggaattgcg aggcgccgag gaacgtgttc
      601 atcgtgcgct ggccgtccgg ggtcacgaag atcaggcagc gcgcggtcgt cggctggccg
      661 ggacgcgccg gcatctcgaa atgcacgccc gccgcgcgaa gatcatgcgc gaaaatccgg
      721 ccgagctcgt cgtcagcgac ctggccgaca aaagcgcagc gcccgccaag cgccgcgatg
      781 cccgccgccg tgttcgccgc agaaccgccc gagacctcgc ggccagggcc cattttcgca
      841 tagagcgcat cggcctcctc cggcgagaag atcagctgca tcgagccctt cgcgaccccg
      901 atttcggcga tgaagctgtc ctccgcctgg gcgaggatgt cgacaattgc attgccgatc
      961 gcgacgacgt cataggtggc ggggttcact cgggcctccg gtctggtggg aattgcgcgt
     1021 ccgcatagag cggatcggcg gcgcgtccaa ccggttggtc gcgccaaggc ttgccttgcc
     1081 cgcgcgtcca tggtgtccgg agcggatgcg aaagcattgg caaacagggg gattggcgct
     1141 gttgctgggg ggctgtgcgg ccgcgcccca gtccgtcacc tcgcttccgg tgacgccgcc
     1201 cgtcatttcg acttcaggcc tggagcgcgt tctgggccat cccgcgcgag cgctggtggc
     1261 gctgttcggc gcgcccgagc tcgacgtgcg cgaggaccgc gcgcgcaagc tgcaattcgc
     1321 cggcccgatc tgcgtgctcg acgcttatct ttaccccaag gacgggagcg agccggtcgt
     1381 aacctatgtc gatgcgcgcc agcccgacgg ccgcgacatc gaccgcgcca gctgcgtcgc
     1441 cgcgctgatc gcgaaccggc ggcgctaggg cttcccgact tcgctcgaag cgaactggtt
     1501 gacgtcgcga cctcagtccg gaggccgccg ttcctgattg tggcgcttga gctcgtcgcc
     1561 ggtgattcgt gcgacgtgga gcacgttggt cgagcccggc gtcccgaacg gcacgccggc
     1621 gatcacgatc acgcggtcgc ccgccttcgc gatgttgtgc ctgagcgcca tgcgcttgga
     1681 cttggcgatc atttcctcga aggattcgac gtcgcgggtc cgcaccgcgt gcacccccca
     1741 gagcagcccg agccggcgcg ccgtttccag cttcggggtc agcaccagca gcgggactga
     1801 cgggcgctcg cgtgcgaccc ggcgcgctgt cgagccagac agggtgaagc agatgatcgc
     1861 ggcggcagag accgtgctgg cgatcgagcc cgccgcttcc gcaagcgcat cggccgtggt
     1921 cggatcaggc cgcgtctcgg tgaaatgcac gcgcgcggca tagccggggt cccgctccac
     1981 cgcgttcgcg atcgcgttca tcattgcgac cgattcttcc ggccagtcgc ccgccgcgct
     2041 ttcggccgaa agcatcaccg cgtcggcacc gtcatagatc gccgtcgcca cgtccgagac
     2101 ttcggcccgg gtcggcgtgg gcgacttgat catcgattcg agcatctggg tcgcaaccac
     2161 cacgggccgg cccattcgcc gcgcagtttc gacgatacgc ttctgcatcg gcggcacgtc
     2221 ctgcggcggg agctcgacgc cgagatcgcc gcgcgcgacc atgaccgcgt cggcgagctc
     2281 caatatgggc tccagccgct ccagcgccgc cggcttctcg atcttggcga gcaaggacgc
     2341 gcggccctgg atcaaccgcc gcgcctccgc cacatcctcg ggccgctgga cgaagctcag
     2401 cgccacccaa tcgacgccga gatcgagcgc aaaggcgaga tcggagcggt ccttttcggt
     2461 gagcgccgcg agcggcacca cgacatcagg gacgttgagc cctttgttgt tcgacagggc
     2521 gccgccgact tccactttcg tctcgatccg gtcgtgcgtc gcgccggtga cgcgcagcac
     2581 gagcttgccg tcgtccagca gcagccgcgc cccttcttcc agcgcgatga acagttcgcg
     2641 gtgaggcagg cagacgcggc cggcgtcgcc cggcgcgggg tcgcgatcga gcacgaattc
     2701 ctggcccgtc ttcaggagcg ccattccttc ggcgaacgtg ccgacgcgca gcttggggcc
     2761 ctgcaggtcg accaggatcg tggtcggccg gcccagcgtc ttttcgagcg cgcggatatt
     2821 ctcgatcgtc tgggcgtgac cgctttgggc gccgtggctc atattcacgc gaaacgcgtc
     2881 cgcgcctgcc cggtagagct tctcgatcat ctccgggctg cggctcgcag ggccgagcgt
     2941 ggcgaggatg cggaccttac gggatcgggg tgcgacgaag ctcaccatgt ttactcgcca
     3001 aggccggtgg acagcggcct cctacccgct aatcggaacc gatcaaccca ttcggaggtc
     3061 aagatggtcg aatatgacga cgccacggcc gctgcggcct tcaggcggct ggtcaagcac
     3121 ctccaggccc gtaccgatgc gcagaatgtc gatctgatgg gcctggccgg cttttgccgc
     3181 aattgcctgg gcgactggct cgccgaggcg agcggcggcg gct
//
LOCUS       DASQVK010000302         2692 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_303833,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000302 DASQVK010000000
VERSION     DASQVK010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2692
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303833"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..379
                     /locus_tag="VE567_06410"
     CDS             <1..379
                     /locus_tag="VE567_06410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007407072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HYZ48510.1"
                     /translation="GGNMATVAHGFDRLGLITYPASVGDAEKIFEAALEAGAEDVESD
                     EDEHRIWTAIDSLHDVVRALEPVLGDAEGAKLAWRPHMQVAVAEDDARQLLKLIDALD
                     DDDDVQQVWGNYDVPEDVMERLS"
     gene            376..861
                     /gene="ruvC"
                     /locus_tag="VE567_06415"
     CDS             376..861
                     /gene="ruvC"
                     /locus_tag="VE567_06415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010160909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HYZ48511.1"
                     /translation="MIILGLDPGLGTTGWGVIRAEGNRLAHVANGRIATDAKRDMGAR
                     LVALDDALRLLLADHRPEAAAVEEVFVNKNPQSTLKLGQARGVVLLGAARAGLIVGEY
                     AARLVKKAVVGTGSAEKAQVHAMVARLLPGVEIAGPDAADALAVAICHAHHLITGRRM
                     A"
     gene            916..1512
                     /gene="ruvA"
                     /locus_tag="VE567_06420"
     CDS             916..1512
                     /gene="ruvA"
                     /locus_tag="VE567_06420"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011952976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HYZ48512.1"
                     /translation="MIARLSGALAETGADHAVIDVGGVGYLVQASSRTLSAIGPVGGS
                     VTIFTELQVREDSMTLFGFGSAAERDWFRLLTGVQGVGGRVALAILSALSADELQRAV
                     ASGDKVMVARAQGVGPKLAERIVRELKDKVGGIALGPGAPAALPPGGAANDAVSALTN
                     LGFRPADASAAVAAANDELGDGASLDALVRLALKKAAK"
     gene            1519..2076
                     /locus_tag="VE567_06425"
     CDS             1519..2076
                     /locus_tag="VE567_06425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008069123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4337 domain-containing protein"
                     /protein_id="HYZ48513.1"
                     /translation="MEIELSAEAKDKRLNRNVAITVVALSVVMGLCGIKDGNVVQAMQ
                     QAQSSSVDLWNEYQATRTKLHLAEMSRAQLSVLAADPAKAAPALAALDKAIAKYDAEA
                     PGLAARAKAQSDLYDALNVHDDQFDASDAAISTAISIAAVSALAESGWLLGIAWAFGA
                     FGIFMGLCGFAGWSFHPAVLSGLLG"
     gene            2078..>2692
                     /gene="ruvB"
                     /locus_tag="VE567_06430"
     CDS             2078..>2692
                     /gene="ruvB"
                     /locus_tag="VE567_06430"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HYZ48514.1"
                     /translation="MTDADRLLAAARKPEDIDAALRPKRLDEFVGQKAARENLRVFIE
                     AARARGDALDHVLFFGPPGLGKTTLAQIVAREMGVGFRATSGPVIAKSGDLAALLTNL
                     EDGDVLFIDEIHRLAPAVEEVLYPAMEDRALDLMIGEGPSARSVRIELPRFTLIGATT
                     RQGLLTTPLRDRFGIPVRLNFYTVEELEQVVRRAARLLGADLTDD"
BASE COUNT          433 a          867 c          956 g          436 t
ORIGIN      
        1 tggcggcaat atggctacgg tcgcgcacgg cttcgatcgg ctcggcctga tcacttaccc
       61 cgcgtcggtc ggcgatgcgg aaaaaatatt cgaggcggcg ctggaagcgg gcgcggagga
      121 cgtcgagtcg gacgaggacg agcaccgtat ctggactgcg atcgattcgc tgcacgacgt
      181 cgtccgcgcg ctggagccgg tgctcggcga cgcggaaggc gcgaagctcg cctggcgtcc
      241 gcacatgcag gtcgcggttg cggaggacga tgcccggcag ctgctcaagc tgatcgacgc
      301 gctcgacgat gacgacgacg tccagcaggt ctggggtaat tacgatgtgc cggaagacgt
      361 gatggagcgg ctttcctgat catccttggc ctggaccccg gcctgggcac gaccggctgg
      421 ggcgtgatcc gggcagaggg caatcggctt gcccatgtcg cgaacggtcg gatcgcgacc
      481 gatgcgaagc gcgacatggg tgcacggctg gtcgcgcttg acgacgcgct gaggcttttg
      541 ctcgccgacc atcggccaga ggccgccgca gtcgaggaag tgttcgtcaa caagaacccg
      601 caatccacgc tgaagcttgg ccaggcccgc ggcgtcgtgc tgctcggcgc ggcgcgggcc
      661 gggctgatcg tcggcgaata tgccgcccgc ctggtcaaga aagccgtggt cggcaccggc
      721 tcggcggaaa aggcgcaggt gcacgccatg gtcgcgcggc tgctgccggg cgtcgaaatc
      781 gccggccccg atgccgccga tgcgctggcg gtggcgatct gccatgccca tcatttgatc
      841 actggccggc gcatggccta gcggacggca gggcgcatct cgacttggta cgatacgaac
      901 ggatatagaa cggccatgat cgcacggttg agcggggcat tggcggaaac gggcgcggat
      961 catgcggtga tcgatgtcgg cggcgtcggc tatctggtcc aggcctccag ccgcacattg
     1021 tcggcgatcg gcccggtcgg cggcagcgtc acgatcttca ccgagcttca ggtccgcgag
     1081 gattcgatga ccttgttcgg cttcggatcg gcggcggagc gggactggtt ccgcctgctg
     1141 accggcgtgc aaggcgtggg cggccgcgtg gcgctcgcga tcctctccgc gctttcggcc
     1201 gacgagctgc agcgcgcggt cgcaagcggc gacaaggtga tggtcgcccg cgcccagggc
     1261 gtggggccca agctcgccga gcgcatcgtg cgcgagttga aggacaaggt cggcggcatc
     1321 gcccttggcc ccggcgcgcc cgccgcgctg ccgccgggcg gcgcggcgaa cgacgccgtc
     1381 tccgccctta ccaatctcgg cttccgcccc gccgacgcga gtgccgcggt cgcggcggcg
     1441 aacgatgagc taggcgatgg cgccagcctc gacgcgctcg tacggctggc cctcaaaaaa
     1501 gcagcgaaat aggcggtcat ggaaatcgaa ctcagcgccg aggccaagga caagcggctc
     1561 aaccgcaacg tggcgatcac cgtcgtcgcg ctctccgtcg tgatggggct gtgcggcatc
     1621 aaggacggca atgtcgtcca ggccatgcaa caggcccagt ccagctcagt cgacctgtgg
     1681 aacgaatatc aggcgaccag gaccaagctg cacctcgccg agatgagccg cgcgcagcta
     1741 tcggtcctcg ccgccgatcc cgcaaaggct gcgccggcgc tcgccgcgct cgacaaggcc
     1801 atcgccaaat acgatgccga ggcgccggga ctggccgctc gggcaaaagc ccagtcggac
     1861 ctctacgacg cgctcaatgt ccatgacgat cagttcgatg ccagtgacgc ggcgatctcc
     1921 actgccatct ccatcgcggc ggtttcggcg ctggccgaaa gcggttggct gctgggcata
     1981 gcctgggcat tcggcgcgtt cgggattttc atgggcctgt gcggattcgc cggctggagc
     2041 ttccacccgg cggtgctgag cgggctgctt gggtagcgtg accgacgccg atcgccttct
     2101 tgccgccgcg cgcaagccag aggacatcga cgccgcgttg cgcccgaagc ggctcgacga
     2161 gtttgtcggg cagaaggcag cgcgagagaa tctgcgggtg ttcatcgagg cggcgcgggc
     2221 gcggggcgat gcgctcgatc atgtgctgtt cttcggcccg cccgggctcg gcaagacaac
     2281 gttggcgcag atcgtcgcgc gggaaatggg cgtgggattc cgtgccactt ccggaccggt
     2341 gatcgcgaaa tcgggcgatc tggcggcgtt gctcaccaat cttgaggatg gtgacgtcct
     2401 cttcatcgat gagatccacc ggctcgcgcc cgccgtcgag gaagtgctct acccggcaat
     2461 ggaggaccgc gcgctcgacc tgatgatcgg cgaaggcccg tcggcgcggt cggtgcggat
     2521 cgagctgccg cgcttcacgc tgattggcgc cacgacccgc caggggcttt tgaccacgcc
     2581 gctccgcgac cgcttcggca tccctgtgcg gctgaacttc tacacggtcg aggagctgga
     2641 gcaggtcgtt cggcgcgctg cgcggctgct tggcgcagac ctcaccgacg ac
//
LOCUS       DASQVK010000303         5457 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_82911, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000303 DASQVK010000000
VERSION     DASQVK010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5457)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5457)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5457
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82911"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            99..500
                     /locus_tag="VE567_06435"
     CDS             99..500
                     /locus_tag="VE567_06435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48515.1"
                     /translation="MSKADLEAKAAEAEAAREKFMSTLHVLQNRLNPNTIIDEVKEKA
                     RETRDGAVNAAREGVIQAATHPSTVAAIAVPVLVYFFRKPIARGLGALFGRGKAEPAE
                     PQAQPYESVRASKSSPPEPARPPRAVLPPRP"
     gene            572..799
                     /locus_tag="VE567_06440"
     CDS             572..799
                     /locus_tag="VE567_06440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4170 domain-containing protein"
                     /protein_id="HYZ48516.1"
                     /translation="MSKLHLVFGGRVKDPRGLDFLDLDKIDIVGIFPDYKSAETAWRG
                     AAQRTVDDAEMKYVVVHLHRLLEPDLPGGEA"
     gene            complement(796..1425)
                     /locus_tag="VE567_06445"
     CDS             complement(796..1425)
                     /locus_tag="VE567_06445"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007683283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HYZ48517.1"
                     /translation="MPNLPEGRVTQGIAAATAIAFLLLWLAGWLEAASYQAGFIPARL
                     ATNAGPPGALPVWLTPLTATFVHAGLLHLGFNLMMYIFCGRFVESVIGGVPSLLLYIV
                     GAYAAALAQWAVAPLSAVPMVGASGAISATVGAYAVFFSRSRVRGIGPFSPFVVRVVW
                     LAAGWVFVQSLIGLAAIGGGQIAIAAHIGGFIAGLVLARPLLLWRYRNA"
     gene            complement(1440..1916)
                     /gene="greA"
                     /locus_tag="VE567_06450"
     CDS             complement(1440..1916)
                     /gene="greA"
                     /locus_tag="VE567_06450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011445873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HYZ48518.1"
                     /translation="MATVEKMPMLAEGYEKLQADLKRLKEERPQIVDAIEEARAHGDL
                     SENAEYHAAKERQGQIESEIARLEDRLSRAQIIDPKELGGDKVVFAATVTLIDEDEKP
                     IRYQIVGETEADAKLGRISYNSPLGRALIGRRVGDEVEVTVPSGDRYYLVDKIEFI"
     gene            complement(2001..5336)
                     /gene="carB"
                     /locus_tag="VE567_06455"
     CDS             complement(2001..5336)
                     /gene="carB"
                     /locus_tag="VE567_06455"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007683288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HYZ48519.1"
                     /translation="MPKRTDISSILIVGAGPIVIGQAAEFDYSGTQAAKALKAEGYRI
                     ILVNSNPASIMTDPEFADATYIEPITPAIVAKIIEKERPDAILPTMGGQTALNTALAL
                     FHDGTLDKFGVTMIGADAEAIDKAEDRLKFREAMDRIGLESARSTIAHSIEEAMAGLE
                     KTGLPAIIRPSFTLGGTGGGVAYNRDEFVEIVKKGLDASPTTEVLIEESLLGWKEYEM
                     EVVRDRNDNAIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQVMRNASIAVLREIG
                     VETGGSNVQFAVNPKDGRLVVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDE
                     IQNDITGATPASFEPTIDYIVTKIPRFAFEKFKGSDPHLSTMMKSVGEVMAIGRNFHE
                     SLQKALRGLETGLAGLNIVDTLAGAPKEEILAALARPTPDRLLVAAQALREGLSVEEV
                     HQVAKYDPWFLDRLAEIVAAEEEVCRDGLPRDAAAMRRLKAMGFSDKRLAFLSLRSAN
                     LQPGTRRAFAHASGLIGETVRAMTGGTTEEEVRALRHRLGVRPVFKRIDTCAAEFEAK
                     TPYMYSTYEAPSFGEPEDESVPSDRRKIVILGGGPNRIGQGIEFDYCCCHACFALRDA
                     GFETIMINCNPETVSTDYDTSDRLYFEPLTAEDVLEILHVEQSRGELVGVIVQFGGQT
                     PLKLAHELEKAGIPILGTSPDAIDLAEDRERFAQLVNKLGLKQPENGIARSREEAIAV
                     ANRIGYPVLIRPSYVLGGRAMEIVDGPAQLDAYIATAVQVSGDSPVLIDRYLRDAIEV
                     DVDAIADGAQVVVTGVMQHIEEAGVHSGDSACSLPPYSLGADIVAEIERQTEALARAL
                     SVKGLMNVQFAVKDGQVYLIEVNPRASRTVPFVAKAVGTPIAKLAARVMAGEAIADLP
                     AVNRPTGHIAVKEAVFPFARFPGIDPILSPEMKSTGEVMGIDDDFPTAFAKAQIGAGT
                     MLPLGGTLFVSVKDSDKAAIVAPVRELAALGYRVIATGGTADHLEREGVPIERVNKVA
                     QGRPHIVDRIKDGGVDLIFNTTEGWQSLKDSASIRASALNAKIPYFTTAAASAAVVRA
                     IKALRERPLEVRSLQSYYSPSHA"
BASE COUNT          915 a         1845 c         1744 g          953 t
ORIGIN      
        1 gggccattgg ccgcgacgct gatcgttgtg ctggtcacgt gcgtgattgc cggcctgctc
       61 ggctatctcg cctatcgcaa ggttgcggag gccagccggt gagcaaggcg gaccttgagg
      121 ccaaggcagc ggaggccgaa gcggcgcgcg aaaaattcat gagcacgctg cacgtgctgc
      181 agaaccgact gaacccgaac acgatcatcg acgaagtcaa ggaaaaggcg cgggaaacgc
      241 gcgacggggc cgtcaatgcg gcccgggaag gcgtgatcca ggccgccacc catccctcga
      301 ccgtcgcggc gatcgctgtg ccggtgctcg tctatttctt ccgcaaaccg atcgcgcgcg
      361 gactgggagc cctgttcggg cgcggcaagg ccgaacccgc cgagccccag gcccagccct
      421 atgaaagcgt gcgcgcttcc aaatcctctc cccccgaacc ggcgcgcccg ccgcgggcag
      481 tgctgccgcc tcgaccgtag cgggcaagca cgaaggatag gcgctcgcgc ccgcttgccc
      541 ctgcggcatc cgcccgctag gggccgcgcg catgagcaaa ttgcatttgg tgttcggcgg
      601 ccgcgtgaag gacccgcgcg gcctcgattt cctcgatctc gacaagatcg acattgtcgg
      661 catttttccg gactataagt ccgccgagac cgcctggcgc ggcgcggcac agcggacggt
      721 cgacgacgcc gagatgaaat atgttgtggt gcatctgcac cgcctgctcg agccggacct
      781 gcccggcggc gaagcctaag cgttccgata ccgccagagc agcagcggcc gggccagcac
      841 caggccggcg atgaagccgc cgatatgcgc ggcgatcgca atttggccgc cgccaatggc
      901 ggcaagcccg atcagcgact ggacgaagac ccagcccgcc gccagccaga ccacccgcac
      961 cacgaacggc gaaaacggtc cgatcccgcg cacccggctg cggctgaaga acacggcata
     1021 ggccccgacc gtcgccgaaa tcgcgccgct cgcgccgacc atcggcacgg cggacagcgg
     1081 cgccaccgcc cattgcgcga gcgccgcggc ataggcgccg acgatgtaaa gcagcaggct
     1141 cggcacgccg ccgatcacgc tttcgacgaa gcgcccgcaa aagatgtaca tcatgaggtt
     1201 gaagccgagg tgcagcagcc ccgcgtgcac gaaggtcgca gtgagcggtg taagccagac
     1261 cggcagcgcc ccgggcggcc ccgcattcgt cgccagccgg gccgggatga acccggcctg
     1321 ataggatgcc gcctcgagcc agcccgctag ccacaggagc aggaaagcga tcgccgtggc
     1381 ggcggcgatg ccttgtgtga cccggccctc gggaagattg ggcaagttcc caggtccgct
     1441 tagatgaact cgatcttgtc gacgaggtaa tagcggtcgc ccgagggcac cgtcacttcc
     1501 acttcgtcgc cgacccggcg gccgatcagc gcgcggccaa gcggcgagtt gtaggaaatg
     1561 cggccgagct tcgcgtccgc ctcggtctcg ccgacaatct ggtagcggat cggcttttcg
     1621 tcctcgtcga tcaaggttac ggtggcggcg aacacgacct tgtcgccacc cagttccttg
     1681 ggatcgatga tctgggcgcg gctcaggcga tcttcgaggc gcgcgatctc cgactcgatc
     1741 tggccctgcc gttccttggc ggcatggtat tcggcatttt cggaaaggtc gccatgggcg
     1801 cgcgcttcct cgatcgcgtc cacgatctgg ggccgttcct ctttcagacg cttcaggtcc
     1861 gcctggagct tctcatagcc ctcggccagc atcggcatct tctcgacggt cgccattcat
     1921 ccacccttcg tcgtcaaaac cggcgcgccc ggcggccctg tctcggaccg cctcccactt
     1981 cgatgcctct gtcgggagtg tcaggcgtgc gaaggcgaat agtaggattg gagcgaacgc
     2041 acttcaagag ggcgttccct cagcgccttg attgcccgca ccaccgccgc gcttgccgcc
     2101 gcggtggtga aataggggat cttggcattc agcgccgagg cgcggatgct cgcggagtcc
     2161 ttcagcgact gccagccttc ggtggtgttg aagatcaaat ccaccccgcc atccttgatg
     2221 cggtccacga tatgcggccg gccttgcgcg accttgttga cacgctcgat cggcacgcct
     2281 tcgcgctcga gatgatcggc cgtgccgccg gtcgcgatga cccggtagcc gagagcggcc
     2341 agctcgcgca ctggcgccac gatcgccgcc ttgtcgctat cctttaccga cacgaacaac
     2401 gtgcctccca gcggcagcat ggtgcccgcc ccgatctgcg ccttggcaaa ggcagtcgga
     2461 aaatcgtcgt ctattcccat cacttcgccg gtggacttca tttccggcga caggatcggg
     2521 tcgatgcccg ggaagcgcgc aaatggaaag acggcctcct tgaccgcgat atgaccggtc
     2581 ggccggttca cggcaggcag gtcggcgatc gcctcgcccg ccatcacccg cgcggcgagc
     2641 ttggcgattg gcgtccccac cgccttggcc acgaacggca ccgtccggct cgcgcgcgga
     2701 ttgacctcga tcagatagac ctgcccgtcc ttcacggcga actgaacgtt catcaggccc
     2761 ttgacgctga gcgcgcgcgc gagcgcctcg gtctggcgct cgatctcggc aacgatgtcc
     2821 gcgcccaggc tgtaaggcgg cagtgagcag gcgctgtcgc ccgaatgcac gcccgcttcc
     2881 tcgatgtgct gcatgacgcc ggtgacgacg acctgcgcac cgtcggcgat cgcatccaca
     2941 tccacttcga tcgcgtcccg cagatagcgg tcgatcagca ccggcgaatc gcccgaaacc
     3001 tgcacagcag tcgcgatata ggcgtcgagt tgggccggcc cgtcgacgat ctccatcgcg
     3061 cggcccccga gcacgtagga aggccggatc agaaccggat agccgatgcg gttggcaacg
     3121 gcgatcgctt cctcgcggct gcgcgcgatg ccgttctccg gctgcttcag gccgagcttg
     3181 ttgaccagct gggcgaaccg ctcccgatcc tccgccaggt caatcgcgtc ggggctggtg
     3241 ccgaggatgg ggatgccggc cttttccagc tcgtgcgcga gcttgagcgg cgtctgcccg
     3301 ccgaactgga cgatcacgcc caccagctcg ccgcgggact gctcgacgtg caggatctcg
     3361 agcacgtcct cggccgtcag cggctcgaaa tagagccggt ccgacgtgtc atagtcggtc
     3421 gagaccgttt cggggttgca gttgatcatg atcgtctcga agccggcgtc gcgcagcgcg
     3481 aaacaggcgt ggcagcagca ataatcgaac tcgatgccct gcccgatccg gttcggcccg
     3541 ccacccagga tcacgatctt gcgccggtcg gacggcaccg attcgtcctc cggctctccg
     3601 aagctcggcg cttcgtaggt cgaatacata tagggcgtct tcgcctcgaa ctcggcggcg
     3661 caggtgtcga tgcgtttgaa caccgggcgc acgccgaggc gatgccggag cgcgcgcact
     3721 tcctcctcgg tcgtgccgcc cgtcatcgcc cgcacggttt cgccgatcag gcccgaggca
     3781 tgcgcaaagg cgcggcgcgt gcccggctga aggttcgccg atcgtagcga cagaaaggcg
     3841 agccgcttgt ccgaaaagcc catcgccttc agccggcgca ttgccgccgc gtcgcgcggc
     3901 aggccgtcgc ggcagacctc ttcctcggcc gcgacgatct cggcgaggcg atcgaggaac
     3961 caggggtcgt atttcgcgac ctggtggact tcttccacgc tcagcccttc gcgcagcgcc
     4021 tgagcggcaa cgagcagccg gtctggcgtc ggccgggcga gcgcggccag gatttcctct
     4081 ttcggcgcgc cggccagcgt atcgacgatg ttgagcccgg ccagcccggt ctccagcccg
     4141 cgcagcgctt tctgcaggct ttcgtggaag ttgcgcccga tcgccatcac ttcgccgacg
     4201 gacttcatca tcgtcgagag atgcgggtct gagcccttga acttctcgaa agcgaagcgc
     4261 gggattttgg tgacgatgta atcgatcgtc ggctcgaagc tcgcgggcgt cgcgccggtg
     4321 atatcgttct ggatctcgtc gagcgtgtag ccgaccgcga gcttggccgc gaccttggcg
     4381 atcgggaagc cggtcgcctt ggacgccagc gccgaagagc gcgacacgcg cgggttcatc
     4441 tcgatcacga ccagccgccc gtccttcgga ttgaccgcaa actggacgtt ggaaccgccg
     4501 gtttcgacgc cgatttcacg cagcaccgcg atgctcgcgt tgcgcatgac ctgatattcc
     4561 ttgtcggtca gcgtcagcgc cggcgcgacg gtgatcgagt cgccggtatg gacgcccatc
     4621 gggtccacat tctcgatcga gcagatgatg atggcattgt cgttccggtc gcggacgacc
     4681 tccatctcat attctttcca cccgagcagc gattcctcga tcagcacttc ggtggtgggg
     4741 gacgcatcaa gccccttctt cacgatctcg acgaattcgt cgcggttgta ggcgacgccg
     4801 ccgccggtgc cgccaagcgt gaaggacggg cggatgatcg cgggcagccc ggtcttctcc
     4861 agcccggcca tcgcttcctc gatcgaatgc gcgatcgtgg aacgcgcgga ttccaggccg
     4921 atccggtcca tcgcctcgcg gaacttcagc cggtcctcgg ccttgtcgat cgcctcggca
     4981 tcggcgccga tcatcgtgac gccgaatttg tcgagcgtgc cgtcgtggaa cagcgcgagc
     5041 gcggtgttga gcgcggtctg cccgcccatg gtcggcagga tcgcgtcggg ccgctccttc
     5101 tcgatgatct tggcgacgat cgccggcgtg atcggctcga tataggtcgc gtcggcaaac
     5161 tcggggtcgg tcatgatcga cgccgggttc gagttgacca ggatgatccg atacccttcg
     5221 gccttcagcg ccttcgccgc ctgggtgccc gaataatcga actccgccgc ctgcccgatg
     5281 acgatcgggc cggcgccgac gatgaggatg gaggaaatgt cggtgcgttt gggcattatg
     5341 actcgccgct atctcgaacg gcctcattcc caatgaacac gaaacgaatg tcgtgctcat
     5401 tcgcatcaga cgccgcgaac attttggtca ggcagtaaat ggcatcggcc gatttct
//
LOCUS       DASQVK010000304         2049 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_240416,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000304 DASQVK010000000
VERSION     DASQVK010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2049
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240416"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1102)
                     /locus_tag="VE567_06460"
     CDS             complement(<1..1102)
                     /locus_tag="VE567_06460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HYZ48520.1"
                     /translation="MTDTAWIDAALTSARPQAVGALLRYFRNLDAAEEAYQNACLRAL
                     KSWPQNGPPRDPASWLIMVGRNAGIDEVRRHRKQEALPEDEAISDLGDAEAEIAERLD
                     GSHYRDDILRLLFICCHPDLPATQQIALALRIVSGLSVKQIARAFLVSEAAMEQRITR
                     AKARVAEARVPFETPGAVERSERLAGVAAMIYLIFNEGYSASGDTAEIRSPLCEEAIR
                     LSRLLLRLFQSEPEIMGLTALLLLQHARAAARFDADGAVILLEDQDRALWNKALIAEG
                     LALIDKAMRHRRSGPYQVQAAIAALHARAEKPEDTDWTQIDLLYGALEIMQPSPVVTL
                     NRAVAVSKVKGPQAALDMIEPLATRLSNYFHYF"
     gene            complement(1099..1467)
                     /locus_tag="VE567_06465"
     CDS             complement(1099..1467)
                     /locus_tag="VE567_06465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HYZ48521.1"
                     /translation="MLYAILCYHDEDFVGSWTKEQDAEVMNKLAVVQDKLTKQGRLGP
                     VARLLPTTAATTLRKDDPPLVLDGPYAETKEQLLGFYLVDCKNLDEAVDVARDLGAAN
                     PGGAYEIRPVGVFRPGSVAS"
     gene            complement(1601..2005)
                     /locus_tag="VE567_06470"
     CDS             complement(1601..2005)
                     /locus_tag="VE567_06470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48522.1"
                     /translation="MRKLILISALLLASVSAQAGETRSLSLAGIPTVTTTVAATGASA
                     IEAPQPIAEVSVRLAQAATTASDAAPAQVQAPAAAPVQAQTPAVTQTTTAPATTTTTA
                     TTTKPAKSVKKVRRESDEAKARRIAAKYGVYW"
BASE COUNT          335 a          641 c          704 g          369 t
ORIGIN      
        1 cgaaatagtg aaagtaattc gacagccgcg tcgccagcgg ctcgatcatg tcgagcgcag
       61 cctgcggtcc cttcaccttc gaaaccgcaa cagcgcgatt gagcgtcacg accggcgagg
      121 gttgcatgat ctcgagtgcg ccatacaaga gatcgatctg ggtccagtcg gtatcctcgg
      181 gcttttccgc acgtgcatgc agcgccgcta tcgccgcctg cacctgatac ggcccgctgc
      241 ggcgatgacg catcgccttg tcgatcagcg cgaggccttc ggcgatcaag gccttgttcc
      301 acagcgcgcg gtcctggtcc tcgagcagga tcaccgcgcc atcggcgtcg aagcgcgcgg
      361 cggcgcgggc gtgctgcagc aacaagagcg cggtgaggcc catgatctcg ggctcgctct
      421 ggaacagccg cagcaacagc cgcgacaggc ggatcgcctc ctcgcacagg gggctgcgga
      481 tttccgcagt gtcgccgctc gccgaatagc cctcgttgaa gatcaggtag atcatcgccg
      541 cgactccggc gagccgctcg gaacgctcga ccgcgccggg cgtctcgaac ggcaccctgg
      601 cttcggcgac gcgggctttc gcgcgggtga tgcgctgctc catcgccgct tcgctgacga
      661 ggaaggcacg cgcgatctgc ttcacgctga ggccggagac gatgcgcagc gcgagcgcga
      721 tctgctgcgt cgccggcaga tcgggatggc agcagatgaa gagcagccgc aggatgtcgt
      781 cgcgataatg cgacccgtcg agccgctcgg caatttccgc ctcggcgtcg ccgagatcgg
      841 agatcgcctc gtcctccggc agcgcctcct gcttgcgatg tcggcgcacc tcgtcgatgc
      901 cggcattgcg gccgaccatg atcagccagc ttgcgggatc gcgcggcggg ccgttctgcg
      961 gccagctctt gagcgcgcgc aggcaggcat tttgataggc ctcctccgcc gcatcgaggt
     1021 tgcggaaata gcgcaggagc gcgccgaccg cctgggggcg cgccgaggtg agcgcggcat
     1081 cgatccaggc ggtatcggtc acgatgcaac gctcccgggc ctgaacacgc cgaccgggcg
     1141 gatctcgtag gcgccgccgg gattggccgc gccaagatcg cgcgcgacgt ccaccgcttc
     1201 atcaagattc ttgcagtcga cgagatagaa gccaagtagc tgctccttgg tctcggcgta
     1261 gggaccatcc agcaccagcg gcggatcgtc cttgcgcagc gtggtcgccg cggtggtcgg
     1321 cagcaggcgc gcgaccggac cgagccgtcc ctgcttggtc agcttgtcct gcacgacggc
     1381 gagcttgttc atcacttcgg cgtcctgctc cttggtccag gagccgacaa agtcttcgtc
     1441 gtgatagcag aggatggcgt acagcattcg gcagttaact ccctacgtct tcaaggacga
     1501 cggaatatgc ctgcagccga caatgaagcg gaagaaattt ttcaatttct tccgcttcga
     1561 gagggaactt cgcaagaact tcgaaagagt tgtgtctggc ttaccagtac acgccatact
     1621 tggcggcgat gcggcgggcc ttggcctcgt cggattctcg gcggaccttc ttcacgctct
     1681 tggcgggttt ggttgtcgtc gccgtcgtgg tggtcgtcgc cggagctgtc gtcgtctgcg
     1741 tgacagccgg tgtctgggcc tgcaccgggg ccgcggcggg agcctggacc tgggcggggg
     1801 cggcgtcgct ggcggtggtg gcggcctggg cgagccggac ggacacctcg gcgatcggct
     1861 gtggcgcttc gatggcagag gcgccggtgg cggcgacggt cgtggtgacc gtgggaatgc
     1921 cggccaggct caggctgcgg gtttcgccgg cttgggcgga aacagaagcc agcagcagag
     1981 cagaaatcag gatcagtttg cgcatgggaa gtctccctgt ttgatggcat ggagactagg
     2041 gcaatcgct
//
LOCUS       DASQVK010000305         3340 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_50798, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000305 DASQVK010000000
VERSION     DASQVK010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3340
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50798"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..964)
                     /locus_tag="VE567_06475"
     CDS             complement(<1..964)
                     /locus_tag="VE567_06475"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HYZ48523.1"
                     /translation="MSAAVERPQGNGFDGPLAGVRVLDFSRVVAGPLCGLYFADLGAD
                     VIKVEAPGGDENRKWEPTLSGTSAGFYYLNRGKRGMTLNLKSEAGQEVLRELVASADV
                     LIQSYLPMDSLALGLSHEKLMAMNPDLIHVSISAYGMTGPMRDHPGYDLLAQAFTGIM
                     SMTGEADGPPNRAGASVVDLSTGMLSFGHAVSALYARALGRARGEHVQASLLQSGLEL
                     MSTHVANLAIGGAEPRRQGSGLWNLVPYQAFKAADGWVLIGVTNDPAWQRFCAASGLT
                     DLAENPVYATAKGRIENRRAIVDCIHELVGTMTVAEVVTLLEPAR"
     gene            complement(961..1734)
                     /locus_tag="VE567_06480"
     CDS             complement(961..1734)
                     /locus_tag="VE567_06480"
                     /inference="COORDINATES: protein motif:HMM:NF027439.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HYZ48524.1"
                     /translation="MADKTIVEDINRVRWIRFDRPEKRNALRIEDVEMIRTAIREAPA
                     GTACIVFTGENGHFAAGADVTSFSAASMGKLEIADESVGQKMMREVRTAQVPTIAAIE
                     GYCVGLAMVISAMCDIRVVSRTAKFSMPELKIGIPVIGDSGIFAQYIGMARARELLLT
                     GAFYSAEQLDSWGYINRLVDEGTAQQAVEEFTNIFRDLPVRTLQAQKRIFEAWYQMPP
                     RDAHRLSILEYAATVAHPEVGEWIDQFKATRAAAKEAKK"
     gene            complement(1734..2486)
                     /locus_tag="VE567_06485"
     CDS             complement(1734..2486)
                     /locus_tag="VE567_06485"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HYZ48525.1"
                     /translation="MTQASQVIFEEDGAVGVITIHRPPVNAISSDLRAQLSKVLTASL
                     AREISVLLIRGEGRGFSAGADTKEFAGRGGDPVRTAESLSEGSRFWETIYDVRVPVVA
                     AMHGFAVGAGFMLSTLCDFRLASASCKISLPEIAVGISVGGGGAQLRRLGLREGFIRD
                     LLMNGDVIDAGLALKEGLVDRVFPDESFDQDAIEFCRHLARHGRDALIAMKTALNITE
                     VAADWRSGLAQSRGLSVSFVDAHVKRLKGGAA"
     gene            complement(2559..>3340)
                     /locus_tag="VE567_06490"
     CDS             complement(2559..>3340)
                     /locus_tag="VE567_06490"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HYZ48526.1"
                     /translation="FNPVVAAKFGADMDQISGGRWAMNIVSGWGAHEFEAMGISLLDH
                     KERYVYTAEWLDIVRGLWEHGVFSFEGKHFTIKEATAWPRPVQNPRPLLVNAGQSYTG
                     MNFSARQVDYAFSYPANIPTFKEICEKVGREVGFIGNKRIIFGKTDADAQALAREICD
                     KGDKTAIRNHLIAAGAATKRPIEEVLATQADYDRYFLGDAIIGTPETVAQGLAEWILT
                     YRPNGCCLQFYNCIDDMRVFAEHTIPLLQKLLADEHPLLLH"
BASE COUNT          637 a         1078 c         1003 g          622 t
ORIGIN      
        1 tgcgcgcggg ctcgagcaga gtgacgactt ctgccacagt catcgtccct accagttcat
       61 gaatgcaatc aacgatcgcc cggcggttct cgatacggcc tttggcagtc gcatagaccg
      121 ggttttccgc cagatcggtc aatccggaag ccgcgcaaaa gcgctgccat gccggatcgt
      181 tggtgacgcc gatgagaacc cagccgtccg ctgccttgaa cgcctgatag ggcaccagat
      241 tccacaatcc agagccctgg cggcgaggct cggcaccccc aatggcaagg ttggcgacgt
      301 gcgtgctcat cagctcgagc ccgctctgaa gaagcgatgc ctggacatgc tcgccgcgag
      361 cccggccgag cgcgcgggcg tagagggcac tgacggcatg gccgaaggac aacatgccgg
      421 tcgacaagtc gacgaccgat gcgcccgcgc gattgggcgg gccgtccgcc tccccggtca
      481 tggacatgat cccggtgaat gcctgggcca gcagatcata gccgggatga tcgcgcatcg
      541 ggccggtcat gccataggcg ctgatcgaca catggatcag gtcggggttc atcgccatca
      601 gcttttcgtg ggaaagtccc aaggccaatg aatccatcgg cagatagctt tggatcagaa
      661 cgtcggcgct cgcgacaagc tcgcgaagca cttcctgccc tgcctcgctc ttgaggttca
      721 gggtcatccc ccgcttgccg cggttgaggt aataaaagcc ggcgctggtg cccgacaggg
      781 tcggttccca tttccggttt tcgtcgccgc ccggggcttc caccttgatg acatccgcac
      841 ccaggtcggc aaagtacagg ccgcacaagg gccccgcgac aacacggctg aagtcaagca
      901 cccgaacgcc ggcaagcggc ccatcgaaac cattgccctg cggccgttcc acagctgcgc
      961 tcatttcttg gcttcctttg cggcggcgcg cgtcgccttg aactggtcga tccactcgcc
     1021 gacctccggg tgagcgaccg tggctgcata ttcgaggatg cttaggcggt gcgcgtcgcg
     1081 cggcggcatt tgataccagg cctcgaagat ccgtttttgc gcctgcaagg tgcgcacggg
     1141 caaatcgcgg aagatgttcg tgaattcctc gacggcctgc tgcgctgtcc cctcatcgac
     1201 gaggcgattg atatagcccc agctgtccag ctgctcggca gaatagaagg caccggtgag
     1261 aagcagttcg cgcgcgcgcg ccatgccgat atattgcgca aaaatcccgg aatcgccgat
     1321 cacagggatg ccgatcttca gctcgggcat gctgaatttg gccgtgcgcg aaaccacgcg
     1381 gatgtcgcac atggccgaga tcaccatcgc caggccgaca caatagccct cgattgcggc
     1441 gatcgtcggc acctgcgccg tgcgaacctc gcgcatcatc ttctgtccga cgctctcgtc
     1501 ggcgatctcg agcttgccca tcgaagcggc actgaaactc gtaacgtcgg caccggcggc
     1561 gaagtgacca ttttcaccgg taaagacgat gcaggccgtt cccgccggcg cttcgcggat
     1621 cgccgtacgg atcatctcca catcctcgat gcgcagcgca ttgcgcttct ccggacgatc
     1681 gaagcggatc cagcgaacgc gattgatatc ctcgacgatg gttttgtccg ccatcaggca
     1741 gctcctccct tcaagcgctt cacatgcgca tcgacaaagc tcacgctgag cccgcgtgac
     1801 tgggcgagtc ccgatcgcca gtcggctgca acctcggtga tgttcagtgc cgtcttcatc
     1861 gctatcaggg cgtcccgccc gtggcgcgcg agatggcggc aaaactcgat ggcatcctga
     1921 tcgaagcttt catcggggaa gacccggtcg accaggcctt ccttgagcgc caagcccgca
     1981 tcgatgacat cgccgttcat caacagatcg cgaatgaaac cctcgcgaag ccccaggcgc
     2041 cgcaattgcg cgcctccgcc gccaaccgaa atgcccacgg cgatctcggg cagggaaatc
     2101 ttgcaactgg ccgaagcgag acgaaaatcg cacaacgtag atagcatgaa gccagcgccg
     2161 accgcgaagc cgtgcatggc cgccaccacc ggcacgcgca cgtcgtagat ggtctcccag
     2221 aatcgcgagc cctcgctcag cgattccgcg gtgcgcacgg ggtcgccgcc gcggcccgca
     2281 aactccttag tgtcggcgcc cgccgagaag cccctgccct caccccggat gagcagaacg
     2341 ctgatctcgc gagcaaggct cgccgttagc accttgctca actgggcgcg gagatcgctg
     2401 cttatggcgt tcaccggggg gcggtggatg gtgatgacgc cgaccgctcc atcctcctcg
     2461 aagatgacct gtgatgcttg ggtcattcgt gtttcctttt gcagctgcgt cctgccgagc
     2521 ttgagagccg gaattccacc agggcggtgc gccctacctc agtgcaacag cagtggatgc
     2581 tcgtcggcca gcagcttttg gaggagcggt attgtgtgct cggcgaagac gcgcatgtcg
     2641 tcgatacagt tgtagaactg caggcaacag ccgttcggac gataggtcag gatccactcc
     2701 gccaacccct gcgccaccgt ctcgggcgtc ccgatgatgg cgtcgccgag gaagtagcgg
     2761 tcataatcgg cctgggtagc gagcacttcc tcgatcggcc gcttggtcgc ggcgcctgcg
     2821 gcgatcaggt ggttgcggat cgcagtcttg tcgcccttgt cgcaaatttc gcgcgcgagg
     2881 gcctgcgcat ccgcatccgt cttgccgaag atgatccgct tattgccgat aaagccgacc
     2941 tcgcggccga ccttctcgca aatttcctta aaggtcggaa tattggcggg gtagctgaag
     3001 gcataatcga cctggcgcgc cgaaaagttc attcccgtat aggattggcc ggcgttcacg
     3061 agcaggggcc gcgggttttg gaccggacgc ggccaggccg tcgcttcctt gatagtgaaa
     3121 tgcttgccct cgaagctgaa cacgccgtgt tcccaaagac cacggacgat gtcgagccat
     3181 tcggcggtgt agacatagcg ctccttgtga tcgaggagcg aaatgcccat cgcctcgaac
     3241 tcgtgcgcgc cccagccgct gacgatgttc atggcccagc gaccaccgct gatctgatcc
     3301 atgtcggcgc caaatttcgc ggcaacgacc ggattgaaaa
//
LOCUS       DASQVK010000306         2886 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_114652,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000306 DASQVK010000000
VERSION     DASQVK010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2886)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2886)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2886
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114652"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            652..1653
                     /locus_tag="VE567_06495"
     CDS             652..1653
                     /locus_tag="VE567_06495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010165258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconolactonase"
                     /protein_id="HYZ48527.1"
                     /translation="MTVRQVLLLPLLALVAAAAPPSYRMSAALPGPDGGWDYAAVDPA
                     AHRLFVARGSNITAFDLMGAMPPRSLGTIARAHAAVPVPNSALVLVTSGNDASVRLLD
                     IGSGAETARITVGEKPDAAILDAGTGHAFVANAKDGTVSDIDVRAAKAVRTFRLKPGL
                     EFEAVGAGHILFVNNEDANEIETVDLGSGATGSAIPLPGCEGPSGLAYDRTSNVLISA
                     CANGKAAIVDASSRKLTRLVDIGSGPDAVLLDEMRRIALIPCGRDGVLEILALDGPAG
                     VRKIGSVKTEAGARTGAIDPATGRVYLPTASFAPPATAGGRPVPAPGSFHVLVLSPS"
     gene            1819..2568
                     /locus_tag="VE567_06500"
     CDS             1819..2568
                     /locus_tag="VE567_06500"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HYZ48528.1"
                     /translation="MHRPAQAHSPHEHRPVLALAAIATLGFIFARLASEMVEGDTLAF
                     DRAVLLALRRPGDAADPIGPAWLTDTIVNITSLGSNIVLGLISLIVVGYLLVSGRRSG
                     AALVAISTAGAGLLSLLLKDAFHRARPDIVAHIVQAHSASFPSGHALGSAAVYLTLGL
                     LLTRFDAERRVRVYTITVAVALTVLVGLSRLYLGVHWPSDVLAGWSIGSAWAIACWAI
                     AIQLQRRHVVEEPAAALRQVPDGADWQSRQG"
BASE COUNT          458 a          964 c          923 g          541 t
ORIGIN      
        1 tggtcagcaa gagcgtcgac ggtatgtgag cggcgcaggc tgggatggct gtgagcggcc
       61 tcccaaggaa atttccgcat acgggccggg aacggacaat ccgctcccgg cccgtcgtcg
      121 cttgacgagg cggatgccgg gcgcgctatc ctgtcttgcc tgggccgggg cctgatccga
      181 cgcttcgtgt cggcgacggg gcactcaatg ggcgggtcgc cagattctgc actgcccccc
      241 ctgcggtttc gttccagcgc agcgtcttac ggccatgggg gcagactatg catccgatga
      301 ccaagtgctc agttcctcgg cgagggctga caatggcgcc atattgcccg tgtcgcggaa
      361 tcgggagccg cggatcgagc tgccggctcg tcaggtgagc tcggcttttg acggcacccg
      421 aaatcgtgtc ggccatgttc tttgggcgcg actgctcatc tggagtacgc gcaacagtcg
      481 gggctgatga gccgttctga aaggcaaggc attggtggaa aatcgcgact gcgagtcctt
      541 tgcgggccgt accggctact cacctccgca ctaaagtaat ttaatgtccc ggcgctgctc
      601 tggacatcca aagttggcct atcaccgcaa gaatccttcg aggaggcgca tatgacggtc
      661 cgccaggttc tgctccttcc gctgctggcc cttgtcgctg ccgcagcgcc gcccagctac
      721 cgcatgtcgg cagcactccc ggggcccgac ggcggatggg actatgctgc ggtcgaccct
      781 gccgcgcatc ggctgttcgt cgcacgcggc agcaacatca ccgccttcga ccttatgggc
      841 gcaatgccgc cgcgctctct tgggaccatc gcgcgcgctc acgccgcggt gccggtgcca
      901 aactccgcgc tggttcttgt aaccagcggc aacgacgcca gcgttcgcct gctcgacatt
      961 ggctctggcg ccgaaactgc gcgcatcacg gtaggagaaa agcccgatgc cgcgatcctc
     1021 gacgcgggca cgggccatgc gttcgtggcc aatgcaaaag atggcaccgt ctcggacatc
     1081 gacgtgcgtg cagccaaagc ggttcgaacc tttcgtctca agccgggcct ggagttcgag
     1141 gccgtcggcg ccggacatat cctgttcgta aacaatgagg acgcgaacga gatcgagacc
     1201 gtggatcttg gcagcggcgc cactggctcg gccattcccc tgccgggctg cgaagggcca
     1261 agcggtctcg cctatgaccg cacgagcaat gtgctgatca gcgcctgcgc caatggcaag
     1321 gcggcgatcg tcgacgccag cagccgcaag ctcacgcgct tggtcgatat cggcagcggc
     1381 cctgacgccg tgcttctcga tgaaatgcgc cggatcgcgc tgatcccctg cggccgcgac
     1441 ggcgttctcg agatactcgc gctcgacggt ccagccggtg tccgcaagat cgggtcggtg
     1501 aagaccgaag ccggcgcgcg aacgggtgca atcgatccgg cgaccgggcg cgtctatctg
     1561 cccaccgcga gctttgcgcc cccggcgacg gcgggcggcc ggcccgtgcc ggccccgggc
     1621 agctttcatg ttctcgtgct gagcccgtcc tgagcttcgt tcatctatat cgggatgttg
     1681 aggccggagg gtcagcgcag gccaatgtcg cgaccggcat gacgaattct cgccgttctt
     1741 tttccgcgcc cctgtccgcc gcgcccgctg ccaagctgtc gatcggaacc accggcgcgg
     1801 ccgatattta acccggtgat gcatcgccct gcccaagctc attctccgca cgagcatcgc
     1861 cccgtactgg cgctggcggc gatcgctacc ttggggttca tctttgcgcg cctggcatcg
     1921 gagatggtcg aaggcgacac gctcgccttc gaccgcgccg ttctcctcgc cttgcgtagg
     1981 ccgggcgacg ctgccgaccc gatcggtccc gcctggctga ccgacaccat cgtcaacata
     2041 accagccttg gcagcaacat cgtgctcggc ctgatttcgc tgatcgtggt tggctacctg
     2101 ctcgtgtcgg ggcgccgatc cggagcggcc ctggtggcca tctcgacggc tggggccggc
     2161 ctgctctcgc tgttgctgaa ggatgccttc catcgcgccc ggcccgatat tgtggcgcac
     2221 atcgttcagg cgcacagcgc cagctttcca agcggccacg cgcttggctc ggccgccgtt
     2281 tacttgacct tgggactgct gctcacgcgg ttcgacgcgg aacggcgagt ccgcgtctat
     2341 acgatcaccg tcgctgtcgc gctgacggtg ctggtgggac tgtcacggct ctatctcggc
     2401 gttcactggc caagcgacgt gctggccggc tggagcatcg gatctgcctg ggcgatcgcg
     2461 tgctgggcta tcgcgatcca gcttcagcgg cgccacgtgg tggaggagcc cgctgcggcg
     2521 ctccgccaag tcccggatgg tgcggactgg caatcgcgcc aaggctgacg gcccgtctaa
     2581 tcgccgcttc agccaattgc cgcacctacg caaagcccga ggcaaaatgc ccgccttgct
     2641 cgtccggagc gataacggag cgcgcaccga taaaattcct atgttgcaga aggcgcagcg
     2701 cgatccgtca ccgtcatcaa tcggaccggc agagccggct tcctgagccc tatttttgga
     2761 ccagctttcc gtcgatcagc cgcggcaagc cggtcgcatc gtccctcagt tccggcggca
     2821 gcagtgccgg atcgacgttc tggtagcaga ccggccgcag gaatcggtcg atcgcgaggc
     2881 tgccga
//
LOCUS       DASQVK010000307         3928 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_335806,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000307 DASQVK010000000
VERSION     DASQVK010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3928
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335806"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..627)
                     /locus_tag="VE567_06505"
     CDS             complement(<1..627)
                     /locus_tag="VE567_06505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48529.1"
                     /translation="MPFESAKKRAAVIDLEQIEHVLAVVEACLCETFPQDFFRRCAFA
                     AFGLRALLQDAGIDAVLVGGQFAALVVTPEDGRLALQGFKSGPDLYPHLWVEAADRLI
                     DLGPYLLAFGSDYPVVPMPFLAWSMSAPLPGGLRYKAQRRLPAGHPMSNDSAVNRQCD
                     AFVDRCLELAIARDQRPRLPGWIATDYATLLAAAGRDDPWARGAMHFEQ"
     gene            complement(761..1195)
                     /locus_tag="VE567_06510"
     CDS             complement(761..1195)
                     /locus_tag="VE567_06510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017670580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48530.1"
                     /translation="MTAYAPRLFPCADGVRRVGERLLACTLPRPEWTHEAHLAATLYL
                     VVERPDLDLDAELPGIIRRYNESVGGRNTATEGYHETITRVFLAAVRDHAADTEGAEL
                     CARVNALLASPRGRRDWPLRFYSPERLFSVEARLSFVPPDLL"
     gene            complement(1246..2844)
                     /locus_tag="VE567_06515"
     CDS             complement(1246..2844)
                     /locus_tag="VE567_06515"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007687181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004612 - phosphoenolpyruvate
                     carboxykinase (ATP) activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase"
                     /protein_id="HYZ48531.1"
                     /translation="MADRVPAFSLARQGIETRAELHWNLTTAPLVEHAVRRGEGLLAK
                     DGPLVVATGRHTGRSAKDKFIVRDTETENSVWWGATNQGMTPDHFEALKLDFLAALKT
                     KPDLFVQDLYGGSQPEHRVRVRVINEFAWHNLFIRTLLVRPDEAELAGFEPEYTIVDL
                     PSFQADPERHGTRSETVIAVNFSERLILIGGTAYAGEMKKSVFGILNYLLPVRGVMPM
                     HCSANIGSNGDTAIFFGLSGTGKTTLSADASRTLIGDDEHGWSDTAVFNFEGGCYAKM
                     IRLSPEAEPEIFATTKRFGTVLENVVIDPVTRALDFDDASLAENSRGAYPIDFIPNAS
                     GENMGPVPKNVIMLTADAYGVLPPIAKLTPDQAMYHFLSGYTARVAGTEIGVTEPDAT
                     FSTCFGAPFMPRHPSVYGNLLKERIAKGGVDCWLVNTGWTGGKYGTGSRMPIKATRAL
                     LNAALDGSLNNAEFRTDPNFGFKVPVSVPGVDSAILDPRATWADKDAYDQTAGRLVQQ
                     FIDNFAQFEAHVDEGVRQSAPKAA"
     gene            complement(2986..3372)
                     /gene="rnpB"
                     /locus_tag="VE567_06520"
     ncRNA           complement(2986..3372)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="VE567_06520"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(3392..>3928)
                     /locus_tag="VE567_06525"
     CDS             complement(3392..>3928)
                     /locus_tag="VE567_06525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011445051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C biosynthesis protein"
                     /protein_id="HYZ48532.1"
                     /translation="AAFEPIAAALLLGLAGYALQGRPDLPGHPVAAPDSGSKANEAEI
                     EIRNKMGQQRFGSGPNWLMAADGAMRAGSPIAAVTFIKSGLKENPRDPDLWVGLGNAL
                     VVHNGGMVSPAATYAFQKAAEIAPQHPGPPFFMGLALAQSGQFAQARAIWAELLARSP
                     ADAPWRADLEARLAQLPG"
BASE COUNT          670 a         1273 c         1329 g          656 t
ORIGIN      
        1 ctgctcgaag tgcatagcac cgcgcgccca gggatcgtct cggccggccg cggcgagaag
       61 cgtggcgtaa tcggtggcga tccagccggg caagcgcggg cgctggtcgc gggcgatagc
      121 cagttccagg cagcggtcta caaatgcgtc gcactggcgg ttgacggcgg aatcgttgct
      181 cattggatgg ccggccggaa ggcgacgctg cgccttgtat cgaagccctc ccggcagcgg
      241 cgcgctcatg ctccaggcca ggaaaggcat gggcacgacc ggatagtccg agccgaaggc
      301 gagcaggtag gggccgagat cgatcagccg atcggcggct tcgacccata gatgcgggta
      361 aaggtcgggc cccgatttga aaccttgcag cgccaggcgc ccgtcctctg gcgtgaccac
      421 gagcgctgcg aattggccgc ccacaaggac ggcgtcgata ccggcgtctt gcagcaaggc
      481 gcgcaggccg aaggcggcga aagcgcagcg ccggaaaaag tcctggggga atgtctcgca
      541 gagacaggcc tcgacaaccg ccagcacatg ttcgatctgc tccagatcga tgactgccgc
      601 ccgctttttc gcggactcaa atggcacgcg cccagccccc agcgtcgctc attcgcatat
      661 tcgcaccgag ccccctcccc cggcccttgg ctaatcgcgc gtaaaccagc ctgtattgta
      721 tgcaaacgac atcagtgcgt gcagaccgcg agggggctgg tcagagcaaa tcgggcggaa
      781 cgaagctcag ccgcgcctcg accgagaaca gccgttcagg cgagtagaag cgaagcggcc
      841 agtcgcgacg gccgcggggg ctggcaagca gcgcattcac gcgggcgcaa agctccgcgc
      901 cttcggtgtc ggcggcatgg tcgcgcaccg cggcgagaaa cacccgcgtg atcgtctcgt
      961 gatagccttc ggtcgcggtg ttccgcccgc cgacgctttc attgtagcgg cggatgatgc
     1021 cgggcagctc ggcatcgagg tcgagatcgg gacgctcgac gacgaggtag agcgttgcgg
     1081 ccagatgggc ttcgtgggtc cattccggtc gaggcagcgt gcaggcgagc agccgctcgc
     1141 ccacgcggcg gacgccgtcg gcgcagggga acaggcgcgg cgcgtatgcg gtcatcggga
     1201 tcgggctttc ggttaggaag cgcccgatcc ggatgatcgg gctattcagg cggctttggg
     1261 cgcgctttgg cggacgcctt cgtcgacatg cgcttcgaat tgcgcgaaat tgtcgatgaa
     1321 ttgctggacc agcctgccgg cggtctggtc ataggcgtcc ttgtccgccc aggtggcgcg
     1381 cggatcgagg atcgccgaat ccacgcccgg cacgctcacc ggcaccttga agccgaaatt
     1441 cggatcggtg cggaactcgg cattgttgag gctgccgtcg agcgccgcgt tcagcagcgc
     1501 gcgggtcgcc ttgatcggca tgcgcgaacc ggtgccgtat ttgccgccgg tccagccggt
     1561 gttgaccagc cagcagtcga cgccgccctt ggcgatccgc tctttcagca gattgccgta
     1621 gacggacggg tggcgcggca tgaacggcgc gccgaagcag gtcgagaagg tcgcgtccgg
     1681 ctcggtgacg ccgatctcgg tgccggcgac gcgcgccgtg tagccggaga ggaaatggta
     1741 catcgcctgg tcgggcgtca gcttcgcgat cggcggcagc acgccatagg cgtcggccgt
     1801 cagcatgatc acgttcttgg gcaccgggcc catattctcg ccggacgcgt tcggaatgaa
     1861 gtcgatcgga taggcgccgc ggctgttctc ggccaagctg gcatcgtcaa agtccagcgc
     1921 gcgcgtgacg ggatcgatca ccacattttc gagcaccgtg ccgaagcgct tggtggtcgc
     1981 gaagatttcc ggctccgcct cgggcgagag gcggatcatc ttggcgtagc agccgccttc
     2041 gaagttgaag acggccgtat ccgaccaacc atgctcgtca tcgccgatca gcgtgcggct
     2101 ggcatcggcg gacagcgtgg tcttgccggt gccggacagg ccgaagaaga tcgcggtgtc
     2161 gccgttcgag ccgatattgg ccgagcagtg catcggcatc acgccgcgaa ccggcagcag
     2221 ataattgaga ataccgaaca cgcttttctt catctcgccg gcataggccg tgccgccgat
     2281 caggatcagc cgctccgaga aattgaccgc aatcaccgtt tccgagcgcg tgccgtgccg
     2341 ctccggatcg gcctggaagc tcggcaggtc gacgatcgta tattcgggct cgaagcccgc
     2401 cagctccgcc tcgtccgggc ggaccagcaa agtgcggatg aagagattgt gccaggcgaa
     2461 ctcgttgatc acgcgcacgc gcacgcgatg ctcgggctgc gagccgccat agagatcctg
     2521 cacgaacaga tccggcttcg tcttcagcgc ggcgaggaag tccagcttca gcgcttcgaa
     2581 atgatcgggc gtcatgccct ggttggtcgc gccccaccac acgctgttct cggtctcggt
     2641 atcgcggacg atgaatttgt ccttcgccga acggccagtg tgcctgccgg tcgcgacgac
     2701 cagcggccca tccttggcga ggagcccttc gccgcggcgc actgcatgct cgaccagcgg
     2761 cgcggtcgtc agattccagt gaagctcggc gcgggtctca ataccctgac gagcgagcga
     2821 aaaagcgggc acgcgatcgg ccaagagaat cctccccaaa caagaacaaa gggcgcgctc
     2881 ctgaggacca gggcgcgctc tgacttcacc gccgattaac ccgagggcga cttggcgtca
     2941 aatgaccggg atggtgaacg ggttccgccg ttcgtcccaa attagagcgc cagagggtct
     3001 gtaagccggg ttctgtcctc gccctgaagc gatgtgcggc cattcctctc gggccgccat
     3061 tgctgacggc ctccagcaac caacccgggc gactgggccg gaactgccct ggagccgaag
     3121 ccccgcgccg cccctattcg gtcttgctcc cggtggggtt tgccgtgccg gttccgttgc
     3181 cggtcccgcg gtgcgctctt gccgcaccct ttcgcccttg cctggccgaa gccgtggcgg
     3241 tctgctttct gtggcacttt ccctgatccc cgcctgcgcg aggaccgccg ggcgttaccc
     3301 ggcaccgtcg ttccgtggag cccggacttt cctcggcatc ccgaaagatg acgcggccgc
     3361 ccgaccctct ggctaagcgg ccgatatagc ctcagccggg caattgcgcc agccgcgcct
     3421 cgagatcggc ccgccagggc gcatcggcag ggctgcgggc gagcaattcg gcccagattg
     3481 cgcgcgcctg ggcaaattga cccgactggg cgagcgcgag gcccatgaag aagggcggcc
     3541 ccggatgctg gggcgcaatc tcggcggctt tctggaaagc ataggtggcc gcgggcgaca
     3601 ccatgccgcc attgtggacg accagcgcat tgccgaggcc cacccacagg tcgggatcgc
     3661 gcgggttttc cttgagcccc gacttgatga aagtgactgc ggcaatgggc gagccggcgc
     3721 gcatcgcgcc gtcggcggcc atcagccaat tgggaccgct gccgaagcgc tgctgaccca
     3781 tcttgttgcg gatctcgatc tccgcttcgt tcgccttcga gccgctatca ggcgcggcga
     3841 ccgggtggcc gggcaggtcg ggacggcctt gcagggcata gccggccagc ccgagcagca
     3901 gtgcggcggc aatcggctcg aacgcagc
//
LOCUS       DASQVK010000308         3007 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_177136,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000308 DASQVK010000000
VERSION     DASQVK010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3007
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177136"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(168..680)
                     /locus_tag="VE567_06530"
     CDS             complement(168..680)
                     /locus_tag="VE567_06530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48533.1"
                     /translation="MTDISQTNEGGAAGGSSEAGTTADKLRSQFAAFKDQAGEKAREV
                     AGKSVSQASDALDEAARFLENTARKVEEKLGPQYGRYGFSAAESVSGFAEQLREKDMD
                     DLVEDVRDVVRKSPAVAIGAAVGLGFVLARLLKAGAGYEARDQAASAGKPEPANAAPE
                     QPSASPTFPA"
     gene            829..2115
                     /gene="eno"
                     /locus_tag="VE567_06535"
     CDS             829..2115
                     /gene="eno"
                     /locus_tag="VE567_06535"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013039826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004634 - phosphopyruvate hydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HYZ48534.1"
                     /translation="MTAIIDINARQILDSRGNPTVEVDVELEDGSFGRAAVPSGASTG
                     AFEAVEKRDGDKTRWLGKGVGQAVEAVNGEIAEHILGLDAEDQADLDARMIALDGTEN
                     KSRLGANAILGVSLAVAKAAAQASGLPLYRYVGGVSAHLLPVPMMNIVNGGAHADNPI
                     DFQEFMIMPVGAESLSEAVRWGAEIFHTLKKNLHDKGLATAVGDEGGFAPNLASPSDA
                     LDLIMKSIEQAGYVPGDEVVLALDCAATEYYRNGAYALEGEGRTLSAEQMVDYLADLC
                     GRYPIRSIEDGMAEEDYDGWKLLTDRLGDRIQLVGDDLFVTNPKRLADGIARGLANSL
                     LVKVNQIGTLSETLEAVSTAQRARYTAVMSHRSGETEDATIADLAVATNCGQIKTGSL
                     ARSDRLAKYNQLIRIEEQLGPQAKYGGKAIFPHKAG"
     gene            2147..2476
                     /locus_tag="VE567_06540"
     CDS             2147..2476
                     /locus_tag="VE567_06540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HYZ48535.1"
                     /translation="MAKRRNVWDLVKGAAGPAAALLVIGFFGGYALAGPNGVMAWGDY
                     RRQLQHKRTELAKLEAQRKVIAHRVALLDPRKANPDLADELIRERLGYAHPDEIIIPM
                     DQADPAR"
     gene            2749..>3007
                     /locus_tag="VE567_06545"
     CDS             2749..>3007
                     /locus_tag="VE567_06545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HYZ48536.1"
                     /translation="MARAAKPKAPQSAPPATPNRERPPEPERFKASKEELLDMYRQML
                     LIRRFEEKAGQLYGLGLIGGFCHLYIGQEAVAVGLQSALKGG"
BASE COUNT          519 a         1008 c          969 g          511 t
ORIGIN      
        1 ccagcgcgag cgtgatcgca atcaccccat agagggcggc ctgcttgatc ggctgcgcct
       61 tgtcggcagc cttcgccttg taaagctcca cttcggcgcg cgcaaaacgc ttgccgtcgt
      121 cgaccagctg cgtgaacagc tgtccgatcg aaacctctgc gtccatctca ggccgggaaa
      181 gtgggggagg cggacggctg ctccggcgct gcgttcgccg gctccggctt gcccgccgac
      241 gccgcctggt cccgcgcttc atagccggcg cccgccttca acagccgcgc gagcacgaag
      301 cccagtccca cggccgcgcc aatcgcgacc gccgggctct tgcgcaccac gtcccggacg
      361 tcctcgacca gatcgtccat gtccttttcc cgaagctgct cggcaaagcc ggagacgctt
      421 tccgccgcgc tgaagccata gcggccatat tgcgggccca gtttttcctc gaccttgcga
      481 gcagtgttct caaggaagcg cgccgcttca tcgagcgcgt cgctggcctg gctcacgctc
      541 ttgcccgcaa cctcgcgcgc tttttcgccc gcctggtcct tgaacgcggc aaactgggag
      601 cgaagcttgt cggcggtcgt gcccgcctcg ctcgacccgc cggcagcccc gccttcgttc
      661 gtctggctta tgtccgtcat cgcgcgctct ctccatccag gctgttcgca accagaacaa
      721 tcgctccggc aacgcggttc ccgcttgccc gccccgccga ttgccttccg gccggctggc
      781 cgataggggc ggctcccgaa cccgcagccg atgtaggaag accgttacat gaccgcaatc
      841 atcgacatca atgcgcgcca gattctcgac agtcgcggca accccacggt ggaggtcgat
      901 gtcgagctcg aggacggcag cttcggtcgc gcggcggtgc cttccggggc gtccaccggc
      961 gcgttcgaag cggtcgagaa gcgcgacggc gacaagacgc gctggctggg caagggcgtc
     1021 ggccaagcgg tggaggccgt caatggcgaa atcgccgagc atatcctcgg ccttgatgcg
     1081 gaggaccagg ccgatctcga cgcccgcatg atcgcgcttg atgggaccga gaacaagtcg
     1141 cgcctgggcg cgaatgcgat cctcggcgtc agcctcgcgg tcgccaaggc ggccgcgcag
     1201 gcgagtggat tgccgctcta tcgctatgtc gggggggtgt cggcgcacct gctgcccgtg
     1261 ccgatgatga acatcgtcaa tggcggcgcg catgcggaca atccgatcga tttccaggaa
     1321 ttcatgatca tgccggtcgg ggccgagagc ctctccgagg cggtgcgctg gggcgccgag
     1381 attttccata ctctcaaaaa gaacctgcac gacaaagggc tggccaccgc agtgggcgac
     1441 gaaggcgggt tcgcgcccaa tctcgcctca ccttccgacg cgctcgacct catcatgaag
     1501 tcgatcgagc aggcgggcta tgtcccgggc gacgaggtcg tgctcgcgct cgattgcgcg
     1561 gcgaccgaat attacaggaa cggcgcctat gcgctggaag gggagggccg caccctctcg
     1621 gcggagcaga tggtcgatta cctcgccgat ctgtgcggcc gctatccgat ccgctcgatc
     1681 gaggatggca tggccgagga ggattatgac ggctggaagc tgctgaccga ccggctcggc
     1741 gacaggattc aactcgtcgg cgacgatctg ttcgtgacca accccaagcg cctggccgac
     1801 ggcattgcgc gcggccttgc gaattcgctg ctggtcaagg tcaaccagat cggcacgctt
     1861 tccgagacgc tggaggcggt ctccaccgcc cagcgcgccc gctacaccgc cgtcatgtca
     1921 caccgatccg gcgagaccga ggacgcgact atcgccgacc tcgcagtcgc gacaaactgc
     1981 gggcagatca agaccggcag tctcgcccgc tccgaccggc ttgccaaata caaccagctc
     2041 attcgtatcg aggagcagct cgggccacag gcgaaatatg ggggcaaggc gattttcccg
     2101 cacaaagcgg gttgatccgg cgactcggct gtgattcaac gattgcatgg cgaagcggcg
     2161 aaacgtctgg gatctggtaa agggggcggc agggcccgcc gccgcgctac tcgtcattgg
     2221 ctttttcggc ggctacgcgc tggccgggcc caatggcgtg atggcctggg gcgattatcg
     2281 ccgccaactc cagcacaagc gcaccgaact cgccaagctg gaggcgcagc gcaaggtgat
     2341 cgcgcatcgg gtcgcgctgc ttgatccccg caaggccaat cccgatcttg cggacgaact
     2401 gatccgcgag cggctgggct atgcccatcc tgacgagatc atcattccaa tggatcaggc
     2461 cgaccccgcc cgataggcta tagcggctca cgaccggggg tgggccatga ctttcgacaa
     2521 tgccaggccg ccggttgtgt tcgtcagcgt gcgcgatcgc gaggccggtc gcgcctgaag
     2581 cgcaagagcc gcgcccgacg gcacgtcaat gcggcctagt tcgccgatcc gttcgggaat
     2641 gtgctgagcc tgtcgtaaac ctgagttccg ctacgaccgg ctggttgcga aggcgggcgt
     2701 cccgcgccta taggcggccc caatcctcac ctgagaaggg attgtccttt ggcccgtgcc
     2761 gcaaagccca aggcgccgca aagcgcgccg cccgccacgc cgaaccgcga acgtccgcct
     2821 gaaccggagc gcttcaaggc gtctaaggaa gagctgctgg acatgtaccg gcagatgctg
     2881 ctcattcgcc gcttcgagga aaaagcgggt cagctttacg ggctcgggct gatcggcggc
     2941 ttctgccacc tctatattgg gcaggaggcg gtcgcggtcg gcctgcagtc ggcgctgaag
     3001 ggcgggc
//
LOCUS       DASQVK010000309         3615 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_240594,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000309 DASQVK010000000
VERSION     DASQVK010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3615
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240594"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..457)
                     /locus_tag="VE567_06550"
     CDS             complement(<1..457)
                     /locus_tag="VE567_06550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HYZ48537.1"
                     /translation="MFAERLPEFIVVGAAKAATTWIAHHLRERPDVFLPGPEPHFYSR
                     FYDKGFDWYAKCFRGAQPEQKVGEKSADYLAHPDVPARLAATIPGVRLVVQLRNPIDR
                     AYSDYCMFYRRGTVGSDVERHLRAGSAKYPRFLEDGLYYRHLSRFLEHFP"
     gene            complement(478..1725)
                     /locus_tag="VE567_06555"
     CDS             complement(478..1725)
                     /locus_tag="VE567_06555"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018251347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HYZ48538.1"
                     /translation="MSGVASILPGPALAPLVPASLPGEKGLPLRSRWPLHAADEVEAV
                     AEVLRSGRVNALLHGDECRAFEQAFAAFCDMPYAFSVANGTLALELALRALGIGPGDE
                     VIVPARSFFATASCVSICGATPVFADVDPESQNITADTLAAAITPRTRAVIVVHLAGW
                     PCAMDDIAGVAAAHGLRMIEDCAQAHGASYRGRLAGSFGDASAFSFCTDKIMSTGGEG
                     GMVLFRDRSAAQRARSFKDHGMNFAAHGQPGGPGFRWLRDTIGSNYRMTEMQAAIGRR
                     QLRKLPGWLHFRRQNADLLNTLLADTPALRLTVPGPEIKHAYYKYYAFVRSEELRSGW
                     TRDRIVAEVNERGCPCFTGICPEIYLELAYRGRPRTPRKRLPGAQRLGEESLMLQVDQ
                     TLSPDQVERMAEIVDVVMAQAAR"
     gene            complement(1722..>3615)
                     /locus_tag="VE567_06560"
     CDS             complement(1722..>3615)
                     /locus_tag="VE567_06560"
                     /inference="COORDINATES: protein motif:HMM:NF014740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="nucleoside-diphosphate sugar
                     epimerase/dehydratase"
                     /protein_id="HYZ48539.1"
                     /translation="LSLRVGDQVTPAMARGLLISTPIYLAIALPLFYSLGLHRRVWRF
                     ASVADLLIVAQAATISIAMLVIALITLGQFGWMPRSLPAIHWLVLVFTMGGMRMLRRL
                     VFEYRGPFGPGQVLRPQPPRALRRALIAGPADQVQTLLRLIENDPVTDLCPVGIVNND
                     GSQLNLRVRGIPVLGSIDELDHVVRRLIAEGRAPEQLIIGDTEEGLRSPRMVGLVNVA
                     ESLGLKIACLPRLVEMGKRQPANLDLRFINVAELLGRPQTELDNGKVTLAITGRRVLV
                     TGAGGTIGRELVRQVAAQSPAELILLDASEFNLYDVDLEVGEQFPGLARTPVLCSVRQ
                     RQHLMDVFATHRPEIVLHAAALKHVPLVERNPCAGILTNVIGTRNVADAARQYRARAM
                     VQVSTDKAVNPVGMMGATKRLGELYCQALDLDGRNDPGSPRFMTVRFGNVLGSSGSLI
                     PLFQRQLSRGLPLTVTHEDIERYFMTVNEAVHLVLQSMAYGLNSNAMRGRIFVLDMGQ
                     PIKIIDIARRMIRLAGLEPERDVKIEIVGLRPGEKLYEELFGEAERRLPSPLPGILVA
                     EPDAIPLSVLSEAFDALAHTSVAGDAHTAGQLVRALLEQERRVVRVDAFHGQPSQVSP
                     DMAVVA"
BASE COUNT          674 a         1176 c         1187 g          578 t
ORIGIN      
        1 gcgggaaatg ctcgagaaag cggctcagat gacggtaata caggccgtcc tccaggaagc
       61 gcggatattt ggcggaaccg gcgcgcaagt gccgctcgac atcgctgccc acggttcccc
      121 gccggtagaa catgcaataa tccgaatagg cccgatcgat gggattgcgg agctggacga
      181 ccaggcggac gccgggaatg gtcgccgcga gccgcgccgg cacatcggga tgggcaagat
      241 agtccgccga cttctcgccg accttctgct ccggctgcgc acccctgaag cacttggcgt
      301 accagtcgaa acccttgtcg tagaagcgcg agtagaagtg cggctccggc ccgggaagaa
      361 agacatcggg ccgctcgcga agatggtggg cgatccaggt ggttgccgcc ttggcggccc
      421 cgacgacgat gaactcgggc aatctctcag cgaacatgat ctatctactg tttctgtcta
      481 ccgggcggct tgcgccatga cgacatcgac gatttcggcc attcgctcga cctgatcggg
      541 ggacagggtc tggtcgacct gcagcatcag gctctcctcc ccaaggcgct gcgcgcccgg
      601 caggcgcttc cggggagtgc ggggacggcc ccgataggcc agctccagat agatttccgg
      661 gcagatgccg gtgaagcatg ggcaaccgcg ctcgttcacc tctgcaacga tccggtcgcg
      721 cgtccagcct gagcgcagct cctcggaccg cacgaaggcg taatatttgt aataggcgtg
      781 cttgatttca ggcccgggca cggtgagcct cagggccggc gtatcggcca gcagggtgtt
      841 gagaagatcg gcattctgac gccggaaatg cagccagcct ggcagcttcc ggagctgacg
      901 ccggccgatc gcggcctgca tttccgtcat ccggtagttg ctgccgatcg tgtcgcgcag
      961 ccaccgaaat ccggggccgc ccggctgccc gtgcgcggcg aagttcatcc cgtgatcctt
     1021 gaaggaccgc gcgcgctgcg cagcgctccg gtccctgaac agcaccatcc ccccttcccc
     1081 gcccgtcgac atgatcttgt cggtgcagaa ggaaaaggcg gaggcgtcgc cgaacgagcc
     1141 agccagccgg ccgcgataag aggcgccatg ggcctgggca caatcctcga tcatgcgaag
     1201 cccgtgtgcg gccgcaaccc cggcaatatc gtccatcgcg cagggccagc cggcgaggtg
     1261 gacgacgatc acggcacgcg tccgaggtgt gatcgcggct gcaagcgtgt ccgcggtaat
     1321 gttttggctc tcgggatcga catcggcaaa aacgggcgtc gcgccgcaaa tgctcacgca
     1381 gctggcggtg gcgaaaaagc tgcgcgccgg cacgatcact tcatcgcccg gcccgatgcc
     1441 gagcgcgcgt agggccagct ccagcgccaa tgtcccattc gcgaccgaga atgcgtaagg
     1501 catgtcgcag aaggccgcga aggcctgctc gaacgcccga cattcatcgc catgcagcag
     1561 cgcgttgacc cgccccgaac gcagcacctc cgccacagcc tcgacttcat cggcggcatg
     1621 gagtggccag cgggaacgga gcggcagccc cttttcgcct ggcagactcg cgggaacgag
     1681 cggcgcgagc gccggacccg ggagaatgga tgcaaccccg ctcatgcgac cacagccatg
     1741 tcggggctca cctgcgaagg ctggccgtgg aaggcatcga ctcgcacgac gcgccgctcc
     1801 tgttcaagga gcgcccgaac caattgcccg gcggtgtgcg catcgcccgc gacgcttgtg
     1861 tgggcgagcg cgtcgaacgc ttcgctcagc actgacagcg ggatcgcgtc tggttcggcg
     1921 acgaggatgc cgggcagcgg cgacggcagg cgccgttccg cttcgccgaa cagctcctca
     1981 tacagctttt cgcccgggcg cagtccgacg atctcgatct tcacgtcgcg ttcgggctcg
     2041 agtccggcaa ggcggatcat ccggcgcgcg atgtcgatga tcttgatggg ctggcccatg
     2101 tcgagcacga agatccgtcc gcgcatcgca ttgctattca ggccataggc catgctctgg
     2161 agaacgaggt gaaccgcttc attgacggtc atgaagtagc gttcgatgtc ctcgtgggtg
     2221 acggtgagcg ggagcccgcg gctcaactgg cgctggaaga gcgggatcag cgatccgctc
     2281 gagccgagca cgttgccgaa ccggaccgtc atgaagcggg gcgagcctgg atcgttcctg
     2341 ccgtcgagat caagcgcctg gcagtaaagt tcgccgaggc gctttgtcgc ccccatcatg
     2401 ccgactggat tgacggcctt gtcggtcgag acctgcacca tagcgcgcgc gcggtactgg
     2461 cgcgcggcgt ccgcgacgtt ccgcgtcccg atcacgttgg tgagaatgcc cgcacaggga
     2521 ttccgctcga ccagcggcac atgcttcagc gccgcggcat gaaggacgat ctccggcctg
     2581 tgggtggcaa agacgtccat caaatgctga cgctgccgga ccgagcaaag cacgggcgtg
     2641 cgcgccagcc cggggaattg ctctccgacc tccagatcga cgtcgtagag gttgaattcg
     2701 ctcgcatcga gcaggatcag ctcggccggc gattgcgcgg caacctggcg gaccagctcg
     2761 cggccaatcg tgccgcccgc gcccgtcacc agcacccggc ggccggtgat cgccaaagtc
     2821 accttaccgt tgtcgagctc ggtctgtggc cgccccaaca gttccgcgac attgatgaac
     2881 cgcaaatcga gattggcagg ctggcgcttg cccatttcga ccaggcgcgg gaggcacgcg
     2941 atcttgaggc cgaggctttc cgcgacattg accaggccca ccatgcgcgg gctgcgcagc
     3001 ccttcctcgg tgtcgccgat gatcagctgc tcgggcgcgc ggccttctgc aatcaaccgc
     3061 cgcacgacat ggtcgagctc gtcgatcgag cccagaacag gtatcccgcg gacgcgcaga
     3121 ttcaattggc tgccgtcatt gttgacgatg ccgaccggac agaggtccgt caccggatca
     3181 ttctcgatca gccgcaagag ggtctgaacc tggtcggccg gtccggcaat cagagcgcgc
     3241 cttaaagcgc gcgggggctg aggccggagc acctggccgg gcccgaacgg cccccgatat
     3301 tcgaacacga ggcggcgcag catgcgcatg ccgcccatcg taaagacgag caccagccaa
     3361 tggatggccg gcagggaacg cggcatccag ccgaactggc caagcgtgat cagcgctatc
     3421 accagcatcg cgatggagat cgtcgcggcc tgcgcgacaa tgagcaggtc cgcgacggag
     3481 gcgaagcgcc agactcggcg gtgcaggccc agcgaataga agaggggaag cgcgatcgcc
     3541 aaatagatgg gcgtcgagat cagcaagcca cgcgccatcg cgggcgtaac ttgatcgccg
     3601 actcttaggc ttagt
//
LOCUS       DASQVK010000310         2490 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_436437,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000310 DASQVK010000000
VERSION     DASQVK010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2490)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2490)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2490
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_436437"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            521..793
                     /locus_tag="VE567_06565"
     CDS             521..793
                     /locus_tag="VE567_06565"
                     /inference="COORDINATES: protein motif:HMM:NF018294.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1127 domain-containing protein"
                     /protein_id="HYZ48540.1"
                     /translation="MISIGRSHDAARFADGTSSAGLRHADGFRQALVAAPARVIDWLR
                     MWHQMRRAIRDVAALDDRMLADIGLSRGAVVYAVVRGRFPNREQDW"
     gene            935..1462
                     /locus_tag="VE567_06570"
     CDS             935..1462
                     /locus_tag="VE567_06570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48541.1"
                     /translation="MSNPHRKCTRGLASDHSIDGGRGRRSASADCGSQQLKVRDWSIA
                     RPFRATIVRIVISGLITAAAMAHAAAQTPVADLGCRDAVDWVARDWQARAVPTPSKPG
                     QAQVTGRDGRVYTGGEYRHIETEIRSAALDCEAGRVSDSLARARDAAALINPTGQVFA
                     RTADKTKVPPMSQAD"
     gene            2136..2288
                     /locus_tag="VE567_06575"
     CDS             2136..2288
                     /locus_tag="VE567_06575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1127 domain-containing protein"
                     /protein_id="HYZ48542.1"
                     /translation="MRLSSEGSRRISIAELTALDERMLADIGPSPYAIEYAVHHGRWP
                     SREPGW"
BASE COUNT          421 a          854 c          835 g          380 t
ORIGIN      
        1 tccccgatac ggaagtcgcg ctcgtcgccg cgccggaggc gaatcccgcc actcgccgcc
       61 tcgccgacgc ccttgccgag ttctgcaacg ccgtcgaggc gcgcgaagcc gcctgatcgg
      121 cgccgaccag gggcgcgttg cggcggctgc gttaccgctc tgcgggcgac cgcggcactc
      181 tcttgagcga catcgcagga tcgagcggcg tcctggcctg cagcgcgtcg acgggcagcg
      241 cgaggacgac agcaatccaa cctgcgccag gacgaatgcc tggtcccagt agatgtgctc
      301 gctctcgacc ttgccgtcgc ggacgggaat gccacgatgc gcgacccggc catttcaggg
      361 ccccaaattc ggattacggc tgcagcgcat cgaatgatcg aagaggtttc gtccgtaacc
      421 cgaagtccgg atcctgaaat cgtcgtgtag ccgctcgccc cgacgatccc tcctcggcaa
      481 gtcaggccaa accggcctga agcagaaccg aggaacagcg atgatctcaa tcggacgatc
      541 tcacgacgcg gcgcgctttg cggacgggac ctcctcagcc gggctccgcc acgcggatgg
      601 gttccggcaa gcgctggtcg ccgctcctgc gagggtgatc gactggctcc gcatgtggca
      661 ccagatgcgc cgcgccatac gcgacgtggc cgcgctcgac gatcgaatgc tggccgatat
      721 tggcctcagc cgcggcgctg tcgtgtacgc cgttgtgcgc ggcaggtttc cgaaccgcga
      781 acaggactgg tgacggagag cggcgaccaa agcgagatcg ccgcgatcga cgaacaaatc
      841 cgcgtccctc gcggaagcgc cggaattgat gggacttctc cgcgcactcg ccccgcagcg
      901 cgatgacggc agtgaaaaac gaaggagatc ggaaatgagt aatccacacc gcaagtgtac
      961 gcgtggactc gcgtctgatc attcaatcga tggcggcagg ggccgccgga gcgcgagcgc
     1021 cgattgcggt tcccagcagt tgaaggtgcg cgactggagc attgcacgtc ccttccgcgc
     1081 gacaatcgtg cgtatcgtga tctccggcct catcacggca gcggcgatgg cgcacgctgc
     1141 tgcgcaaacg ccagttgccg atctcggctg tcgtgatgcg gtcgattggg tcgcgcgcga
     1201 ttggcaggcg cgtgccgtgc cgacaccctc aaaacccggc caggcacagg tgaccggccg
     1261 cgacggtcgc gtctacaccg gcggcgaata caggcatatc gaaactgaga tccgcagcgc
     1321 cgcgctcgat tgcgaagcgg ggcgggttag cgactctctc gcgcgcgcga gagacgcggc
     1381 ggcgctcatc aatccaacgg gccaagtgtt cgcgcggacg gcggacaaga cgaaggtccc
     1441 gcccatgtcc caggcggact gatccgcggg tccgcactcg gtcagcccga gcggtagccc
     1501 gcaactgctg ccagctgcct gcttccgaga tgttgagcgg caatcccggg gctccgccga
     1561 gcgcgggcag agcaggccgg agcgagcagg aacctgagcc cgaacgacga ctcccgagga
     1621 gcggtcatga caacgagaca acgacttctc gcgccgtctt cgcgaaatcc actatcgcgt
     1681 gaggcgaacc atgcgcccgt ttgtgatgcg ccaaggtcgg ccgccgcgcg gccacgaagc
     1741 gccacctcta ccgagagcgt cgacttcagc ggcatcccga ccgcggccat ccgctcagca
     1801 ttgcgggctc ttccctgcgc agcgggggcg caggcggggc tgcgcgacgt aaggcgcttg
     1861 cgtccgctcg tcgcggaagc gcacgagatc ttacggaagc gcctcgaaac cggcggcgca
     1921 gtcgaggatt atctgcgcag ccgggcgcgt cttgcggaca gcgcggtcgt cgggctgctc
     1981 catattgcat cgctggcgac tgggcttcgg gacgacggca tggtcgcgcc gctcgccgcg
     2041 gtggcgtcgg cggctacggg cgaagcgaat tggcgccggg ttcgcttcga caaacccacc
     2101 ccgtcgctcc ggtcggacgc ggccgagcga cggtcttgcg cctctcctcc gaaggaagcc
     2161 ggcgaatctc gatcgccgag ctgacggcgc tcgacgagcg aatgctcgcc gatatcggcc
     2221 ccagcccgta cgcgatcgag tacgccgtcc atcacgggcg ctggccgagc cgcgagccgg
     2281 gctggtgacg gcggcagccc tggcggcgac ggagccgacc cggcgcggtc gcctcctccg
     2341 ctcgcctcgc acgtgtcgac aacaactcct gaccggatca tcggctgatg cgtatagcgc
     2401 ctgactgctt cgccttcacg ctcctgctcg ggctcatggt gtccctggcg tccgtcgggg
     2461 ccgacatgcg cttgccggcg ctcgccccga
//
LOCUS       DASQVK010000311         3737 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_146088,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000311 DASQVK010000000
VERSION     DASQVK010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3737
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146088"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(116..1153)
                     /locus_tag="VE567_06580"
     CDS             complement(116..1153)
                     /locus_tag="VE567_06580"
                     /inference="COORDINATES: protein motif:HMM:NF028129.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HYZ48543.1"
                     /translation="MKKLFLSSAVAISSAVLASGASMAVAAVVAPHFQIDRVGLPGEG
                     RGDYVTVDPQGRRLYVTHSSAVHILDLDTLKPVAAVDGLKAAHGVALDMATGHGFVSD
                     GEQNAVVMFDAKTGQVIKTIPTGQKPDSILRDDATGKIFVFNGDSEDVSVIDPATASV
                     VGSVKLPHGPEFSQADGKGKIWVNMEEGNNIGEIDSRTMTLVRTIDLPGCDGPAPLAF
                     DAVNRVLFSGCGNKVMTVTDADSGKVLTTVPIGGDPDGITFDPELKRVYVANRDGGWT
                     IVDQLGKNRYKVNQTLKIDEYAKTIALDPKSHRLFSSTADLVWPPAVPGKKHLPNAKS
                     GTFRLLVVSQK"
     gene            complement(1224..2588)
                     /locus_tag="VE567_06585"
     CDS             complement(1224..2588)
                     /locus_tag="VE567_06585"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF020110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HYZ48544.1"
                     /translation="MGGLVLPLGIFALLLGLGGALVIQASVQAVNDRILGAASRAIAE
                     SLAMDEGQIALNLSPAIFGMLEDNERDNVYYSVRHGKAVLTGYPDLPDIAPRGLRDLQ
                     VHFGSATYRGHEVRIVAEGRRLPGLAEPLVIQVAETIEARERIARRLLVALALLEGML
                     IALALLLLPLAVRWGMVPLRRLSAEMDRRAGADLTPLPTNAVPTELRDLVRAFNDMLA
                     RLDGALQSMRRFTADASHQMRTPLSILRTHIALLKGMVPPTADARESLEDIDQASARL
                     QHLLVQLLALARADHAITADVPLAQVDLVELARTVAAEHAPAAVQEGVELAFEGEEPV
                     PTIQTQPALAGELLSNLVDNAIRYNRAGGRVCVEVERRGNEIVASVEDDGPGIAAADR
                     ERVFDRFTRLDRDASRTGSGLGLPIARMLAGAIGARLTLGDGRNGRGLRAEVAFYLPQ
                     PTDS"
     gene            complement(2636..3304)
                     /locus_tag="VE567_06590"
     CDS             complement(2636..3304)
                     /locus_tag="VE567_06590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010338501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYZ48545.1"
                     /translation="MARILLVEDDPSLARGLAAALRRAGYAVDTAEDGETGISLALDE
                     PYAIVTLDIGLPDMSGFEVLRRVRREGLKTPVIMLTARDAIEDRVAGLDLGADDYLLK
                     PFEPAELEARLRALLRRSRGEASPVMTVGALTIDASRAHAEVAGRALNLRRREWAVLD
                     RLIARVGKVVSKDRLTAEVFGYDDPVAPNAIEVYVARLRRKLEPDGPEIRTIRGLGYM
                     LVAE"
     gene            3412..>3737
                     /locus_tag="VE567_06595"
     CDS             3412..>3737
                     /locus_tag="VE567_06595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48546.1"
                     /translation="MASTLACALTTCASEPFPPVPKGYPQAYFQTVEKAEDEGALMIW
                     SATDRQKVAPLLEAFHRFYPEVPVTYVELSAGELNDRFVKAADAGARVPDLLWSAAMD
                     LQIKLV"
BASE COUNT          675 a         1202 c         1221 g          639 t
ORIGIN      
        1 caaaagcggg ggccttcttc gccgtcgatc gtatgcgtct cgtcgatcgg ctggaccatt
       61 atcggttcgg ccggggccaa accctccttc tcggccggcg ccggcgccag cgagctcact
      121 tctgggacac cactaagagc cgaaacgtgc ccgacttggc attgggaaga tgcttcttgc
      181 cgggaaccgc gggcggccag accaaatcgg cggtcgatga aaagaggcgg tgcgacttgg
      241 gatcaagggc gatggttttg gcatattcat cgatcttgag cgtctgattg accttgtacc
      301 tgttcttgcc gagctgatcg actatggtcc agccgccgtc gcgattggcg acatagaccc
      361 gcttgagctc gggatcgaac gtgatgccgt cgggatcgcc gccgatcggc acagtcgtca
      421 ggaccttgcc gctatccgca tccgtgacgg tcatcacctt gttgccgcag ccgctgaaca
      481 agacgcggtt caccgcgtcg aaggcgaggg gagcgggccc gtcgcaaccg ggcagatcga
      541 tcgtccggac gagcgtcatg gtccgggaat cgatttcgcc gatattgttg ccttcttcca
      601 tgttgaccca aatcttgccc ttgccgtcgg cctgggagaa ttcgggaccg tgcggcagct
      661 tgaccgagcc gacgacggaa gccgtggcgg gatcgatgac gctgacgtct tcggaatcgc
      721 cgttgaacac gaagattttg ccggtggcat cgtcgcgaag gatgctgtcg ggcttctggc
      781 cggtcgggat cgtcttgatg acctggcccg tcttggcatc gaacatcacg acggcgttct
      841 gctcgccgtc ggacacgaat ccatggcccg tcgccatgtc caatgcgacc ccgtgcgcag
      901 ccttcaggcc gtcaacggcg gcgacgggct tgagcgtatc gagatcgagg atgtgcactg
      961 ccgaggaatg agtgacgtag agccgccggc cctggggatc gaccgtgaca tagtcgccgc
     1021 ggccctcacc ggggaggcca acgcgatcaa tctggaaatg cggggcgacg accgccgcaa
     1081 cagccatcga cgcgccggaa gcaaggaccg cgctcgaaat ggcgacggcg ctcgacagga
     1141 acagcttctt cataatcctc tccgttcgtg gccgggaagt gtcggagccc ggcttgtgcg
     1201 cgagggatta ggcgctcaag ctgtcacgag tctgtcggct ggggcaggta gaaggcaact
     1261 tcggcgcgca atccccggcc attgcggcca tcgcccagcg tcagccgcgc accgatcgcg
     1321 ccagccagca tccgggcgat cgggaggccg aggccgctgc cggtccgcga ggcgtcgcgg
     1381 tcgagacgag taaagcgatc gaacacgcgc tcgcggtcgg cagcggcgat gccgggacca
     1441 tcgtcttcca cgctcgcgac aatctcattc cctcgccgtt cgacctcgac gcaaacacgc
     1501 ccgccggccc gattgtagcg gatcgcgttg tcgacaagat tcgagagaag ctcgcctgcc
     1561 agcgccggct gcgtctggat ggtggggaca ggctcttcgc cctcgaacgc cagttcgaca
     1621 ccttcctgta ccgccgcggg cgcgtgttcc gctgcaaccg tgcgcgccag ctcgacaaga
     1681 tctacctggg cgagggggac atcggcggtg atcgcatggt cggcgcgggc cagcgcgagc
     1741 agctggacga gaagatgctg caagcgcgcg ctggcctgat caatgtcttc gagcgactcc
     1801 cgggcgtccg ccgtgggcgg aaccatgcct ttcaaaagcg cgatatgggt ccgcaggatc
     1861 gaaagcggcg tccgcatctg atgcgacgca tcggcggtga aacggcgcat gctttgcaac
     1921 gcgccgtcca gccgcgccag catatcgttg aaggccctga ccaggtcgcg cagttcggtc
     1981 ggcaccgcgt tcgtcggaag cggcgtcaaa tccgccccgg cgcgcctatc catctctgcg
     2041 ctcagtcggc gcaacggaac catgccccat cggaccgcga gcggtagcag gagcagggcc
     2101 aaggcaatca gcattccttc cagcagcgcc agcgcgacga gaagccggcg cgcgatccgc
     2161 tcgcgcgctt cgatcgtttc cgcaacctgg atgacgagcg gctccgcgag accggggagc
     2221 cgccgtccct ccgccacgat gcggacttcg tgtccgcgat atgtggcgct gccgaaatgg
     2281 acttgcaggt cccgcagtcc gcgcggtgca atgtccggga ggtctggata gccggtcagc
     2341 accgctttgc cgtgccgcac cgaataatag acattgtcgc gctcattatc ctcgagcatc
     2401 ccgaagatcg caggcgaaag attgagcgca atctgcccct cgtccatcgc aagcgattcg
     2461 gcgatggcgc gcgacgccgc gcccaggatg cgatcgttga ccgcctgtac cgaagcctgg
     2521 atgacgagtg cgccccccag gcccagcagg agggcgaaaa tgcccaatgg cagaacaagc
     2581 ccgcccaaaa ggcggcctgt cagggattgg gggcttttga tgcgcggccc gcgcatcatt
     2641 cggcgacgag catatagccc aggccgcgga tggtgcggat ctcagggccg tcgggctcaa
     2701 gcttgcggcg gagccgggcg acgtaaacct ctatggcgtt cggggcgacg ggatcgtcat
     2761 atccaaacac ctccgcggtc agccgatcct tcgagacgac cttgccgacc cgcgcgatca
     2821 gccgatcgag gacagcccat tcccgccttc tgagattgag tgcgcgtccg gcaacttcgg
     2881 catgagcgcg ggaggcatcg atggtgagcg cgccaaccgt catcacgggc gaggcttccc
     2941 cgcgggatcg gcggagcagc gcgcgcagcc gggcctcgag ctcggctggt tcgaacggct
     3001 tgagcaggta atcgtccgcg ccaaggtcga gccccgccac ccggtcttcg atggcgtcgc
     3061 gtgcggtcag catgatcacc ggcgtcttca ggccttcgcg ccggacgcgc cggagcacct
     3121 cgaaaccgct catatcaggc aggccgatgt cgagcgtgac gatcgcatag ggctcgtcga
     3181 gcgcaagcga gatcccggtc tcgccgtcct ccgcggtatc gacggcgtaa ccggcgcggc
     3241 gcagcgcggc agccagaccg cgggcgagag atggatcgtc ttcaacaagc agaattcggg
     3301 ccacgtctct cgtccccatt gacgccggcc agcataggga cggattatgg ccgatgaaag
     3361 ccgcccgacc gcgaggcaga tgaacgaatg ccccgaacat attggcgcat tttggcaagc
     3421 acgcttgcgt gcgcgctgac gacctgcgcc tccgagccgt ttccaccggt tccgaaaggc
     3481 tatccgcaag cctatttcca gacggtcgaa aaggccgagg acgagggcgc gctgatgatc
     3541 tggtccgcga ccgaccggca aaaggtcgcg cctcttctgg aggcgtttca ccgcttctat
     3601 ccagaggttc ccgtcaccta tgtggagctt tccgcaggcg agctgaacga ccgtttcgtc
     3661 aaagccgccg acgcgggcgc gcgcgttccg gatctcctct ggtcggccgc gatggatttg
     3721 cagatcaagc tggtgaa
//
LOCUS       DASQVK010000312         2263 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_367486,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000312 DASQVK010000000
VERSION     DASQVK010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_367486"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..188)
                     /locus_tag="VE567_06600"
     CDS             complement(<1..188)
                     /locus_tag="VE567_06600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48547.1"
                     /translation="MSSPVEKWKAHPAISWIEYKAGEARKGVSRIRHQAMKKAPAEAG
                     AFTTQVRERSVLGDDRATA"
     gene            220..405
                     /locus_tag="VE567_06605"
     CDS             220..405
                     /locus_tag="VE567_06605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010164009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48548.1"
                     /translation="MRKLLVTLGLLALAIGLLWIGQGTGAIAWPASSFMIGSLQWAEY
                     GALLAAVGLILIWQGKR"
     gene            594..1361
                     /locus_tag="VE567_06610"
     CDS             594..1361
                     /locus_tag="VE567_06610"
                     /EC_number="1.1.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF005559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose 1-dehydrogenase"
                     /protein_id="HYZ48549.1"
                     /translation="MTKLFDLSGKVAVVTGGNGGIGLGLARGLADAGADIAVVGRNEA
                     KSAAAVEDLRKRGVRAIAVATDVTDKAAVAAMIERVGKELGRIDILVNNAGTSIRKPT
                     HQLELDEWHTVMNTNLTSAFLCSKAAYPALKAAGRGKVINIGSMMSIFAGSYAPAYAA
                     SKGGIVQFSRSCACAWAPDNIQVNAILPGWIDTDLTKGARQQVAGLHERVLARTPAGR
                     WGEIDDFAGIAVFLASSASDFVTGTAIPVDGGFSVMS"
     gene            complement(1488..>2263)
                     /locus_tag="VE567_06615"
     CDS             complement(1488..>2263)
                     /locus_tag="VE567_06615"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HYZ48550.1"
                     /translation="DIESDLTVGCDGRHSTVRERAGLAVEDIGAPMDVLWFRAGKAAN
                     ETESLFARVDPGKMMVTFDRGDYWQCAFVIPKGGYDAVKARGLPALLDDVVRMAPVLK
                     SGVSDVRSWDDVKLLTVAINRLKKWSSPGLLCIGDAAHAMSPVGGVGVNLAVQDAVAT
                     ANLLAARLQSGVPAEAELEAVQARREFPVKVTQRMQVVVQNNIIRLALKPGAQPLKPP
                     LLMRVITAVPWLQGLTARFVGIGVRPEHVHSPLAGGRMG"
BASE COUNT          390 a          736 c          742 g          395 t
ORIGIN      
        1 gcggtggccc ggtcgtcgcc aagtactgat ctctcccgga cttgagttgt gaaagccccg
       61 gcctcggccg gggctttttt catggcctgg tggcggatgc gacttacccc cttgcgggcc
      121 tccccggcct tgtattcgat ccaggaaatg gccggatgcg ccttccattt ttcaactgga
      181 ctggacaagg ctgacgctgc gacaggcaaa ggggagtgaa tgcgcaagct gctcgtcacg
      241 cttggccttc tcgcgctggc gatcgggctg ctctggatcg gccagggcac cggcgcgatc
      301 gcctggccgg catcgagctt catgatcggc agcctgcaat gggcggaata tggcgccctg
      361 cttgctgcgg tcgggctgat cctgatctgg cagggcaagc gctgattgtc ctctcgcgtt
      421 atggccgggc ttgccgcctt cgctaaagct tcggcggcac gagcatgcta ttggcctcgg
      481 cggagccttg gcggagacgg gacccggcca tctacgtctt cctttcttga gcggcagtaa
      541 cgtggatgcc cgggacgaag cccgggcatg acggggaaag aggaacctgg caaatgacaa
      601 aactcttcga tctctcgggc aaggtcgcgg tcgtgaccgg cggcaatggc ggcatcgggc
      661 tcggcctggc gcgggggctg gcggatgcag gcgccgacat cgcggtggtc gggcgcaacg
      721 aggcgaagtc ggcggcagcc gtcgaggatt tgcgcaagcg cggcgtgagg gcgatcgcgg
      781 tcgccaccga cgtaaccgac aaggccgcgg tagctgcgat gatcgagcgg gtcggcaagg
      841 aactcggcag gatcgacatc ctcgtcaaca atgccggcac cagcatccgc aagccgacgc
      901 atcaattgga actggacgag tggcacacgg tgatgaacac caacctgacc agcgcattcc
      961 tgtgctcgaa ggcggcctat ccggcgctga aggccgcagg ccgcggcaag gtcatcaaca
     1021 tcggatcgat gatgtcgatc tttgccggca gctacgcgcc tgcctatgcg gcaagcaagg
     1081 gcggcatcgt gcagttctcg cgttcctgcg cctgtgcctg ggcgccggac aacatccagg
     1141 tcaacgccat cctgccgggc tggatcgaca ccgacctgac caaaggcgcg cgccagcagg
     1201 tcgccggatt gcacgagcgc gtgctggcac gaacgccggc cggacgctgg ggtgagatcg
     1261 acgatttcgc aggcatcgcc gtgtttctcg cctcgagcgc atccgatttc gtgacgggca
     1321 ccgcgatccc cgtcgatggc gggttctcgg tgatgtcctg acggctgtgc cagttgcgca
     1381 gcttcgtagg atgggttgag cccttgcgaa acccatcatc cttgccgcga acaaattaat
     1441 gggtttcgct tccgctgcgc agggggagcc ggggcggatg gggtcgctca acccatccta
     1501 ccgcccgcca gcggcgaatg cacatgctcg ggacgcacgc cgatcccgac gaagcgcgcg
     1561 gtcagaccct gtagccacgg cacggcggtg atcacgcgca tgagcagcgg cggcttcagc
     1621 ggctgcgctc ccggcttcag ggccagcctg atgatgttgt tctgtaccac cacctgcatg
     1681 cgctgggtca ccttcacggg aaactcgcgt cgcgcctgca ccgcttcgag ctcggcctcg
     1741 gccggcacgc ccgactgtag cctcgcggcg aggaggtttg cggtggcgac cgcgtcctgc
     1801 acggcaagat tgacgccgac gccgccgacc ggcgacatcg catgcgcggc atcgccaatg
     1861 cagagcagtc cgggtgacga ccatttcttc agccggttga tcgcaacggt cagcagcttg
     1921 acgtcgtccc aactccgcac atcagacacg ccggatttca gcaccggcgc catccgcacg
     1981 acgtcgtcga gcagcgccgg caatcccctc gccttcaccg cgtcatatcc gcccttcggg
     2041 atcacgaaag cgcattgcca gtagtcgccg cgatcgaagg tcaccatcat cttgccggga
     2101 tcgacccggg caaagagaga ctcggtttcg ttcgcagcct tgccggcgcg aaaccacaac
     2161 acatccatcg gcgcgccgat gtcctccacc gcgaggcccg cacgctcgcg cacggtggag
     2221 tggcggccgt cgcagccgac ggtcagatcg ctctcgatgt cga
//
LOCUS       DASQVK010000313         2123 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_336385,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000313 DASQVK010000000
VERSION     DASQVK010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336385"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..642)
                     /locus_tag="VE567_06620"
     CDS             complement(<1..642)
                     /locus_tag="VE567_06620"
                     /inference="COORDINATES: protein motif:HMM:NF016064.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE thiosulfate transporter family
                     protein"
                     /protein_id="HYZ48551.1"
                     /translation="MIALAAAGLMGFANQRGGTCTVAAIEEIAATRRFGRMIALLEAS
                     LWVGGGLVVLNAVNCLPPMPAGYAAGLATIAGGILFGLGAFVNGACLFGTVARLGSGE
                     WAYAATPVGLFLGSLVTARLRFAEEIHEPSLVLRASAWGAVVALALIAVRLYTHGADI
                     RRNQRPILTHLWSPHVATTMIGIAFLVAFLMAGNWDYPEFLRDLAQGDTVRWLP"
     gene            complement(639..920)
                     /locus_tag="VE567_06625"
     CDS             complement(639..920)
                     /locus_tag="VE567_06625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48552.1"
                     /translation="MTEIDGSLEFGRFRVLVPRRQMLASGVAVELGTRAFDLLMALIE
                     ANGSVVSESELMTRRTSGRDAGCPGRSTNGRDGGSGAHCVPLKCKSQAF"
     gene            complement(1235..>2123)
                     /locus_tag="VE567_06630"
     CDS             complement(1235..>2123)
                     /locus_tag="VE567_06630"
                     /inference="COORDINATES: protein motif:HMM:NF015177.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48553.1"
                     /translation="EAADGCGLWDEADGFYYDMLSLPDGRCAPLKVRSVVGLVPLFAV
                     EVLEPDLLARCPGFTARLRWLLENRPDLARLVSRWEEPGIGERHLLSLLRGSRMKRLL
                     RRTLDEAEFLSPYGVRSLSKKYEADPYILAIDGHAAEVRYDPAESRVNQFGGNSNWRG
                     PIWLPINYLLVQSLHRFHRYYGDDFRIECPTGSGCYVTLASAADEVARRLVRLFLLGG
                     DGRRPIWGGNSRSRSGPAFDDLLLFHEYFDGDTGKGLGASHQTGWTGLVANLLQEGVH
                     GLGVSFVQHSPTMGRKEAG"
BASE COUNT          413 a          699 c          675 g          336 t
ORIGIN      
        1 ggggagccag cgaacggtgt ccccctgcgc caaatcgcgg aggaattccg gatagtccca
       61 attcccggcc atgaggaagg cgacgagaaa agcgatgccg atcatcgttg ttgcgacatg
      121 gggtgaccat agatgggtca atatcggtcg ctgattgcgc cgaatgtcag ctccatgtgt
      181 atagagacgt acggcgatga gagctagagc taccaccgcg ccccacgccg atgccctgag
      241 cacaagtgac ggctcgtgta tctcttctgc aaagcgcaat cgcgccgtta ctaggctgcc
      301 aagaaagagc ccgacgggtg tggcggcata ggcccattcg ccagacccaa gtcgcgcgac
      361 ggttccgaat aggcatgccc cattcacgaa ggcacctagc ccgaacagaa tgcctccagc
      421 gatcgttgcg agcccggctg cgtaaccagc gggcatcggt gggaggcagt taacggcgtt
      481 gaggacaacc agaccgcctc cgacccacag cgacgcctca agaagcgcga tcatcctgcc
      541 aaatcgtcgc gtcgcggcga tctcttcgat ggccgcgacc gtacatgtgc cgcctcgctg
      601 attggcgaac cccatcaggc cagcggcagc aagagcgatc aaaaagcctg cgacttgcat
      661 ttcagcggca cacaatgagc tccgctgccc ccatcgcgcc cgttggtcga tcgaccaggg
      721 cagccggcgt cccggccgct ggtgcggcgc gtcatcagct cgctctcgct gacgaccgag
      781 ccattcgctt cgatcagggc catcagaaga tcgaaggcgc gcgtgccgag ctcgaccgcg
      841 acgccgctgg cgagcatttg cctgcgcggc accaggacgc ggaagcggcc gaactcgagc
      901 gagccatcga tttcggtcac ggcgtggcgc tcgtgatcac ccggcggcat cgacccacaa
      961 ctcctttgtt gaggtgacaa cccaggtggg gtgccgccat ggatgtttta atgtgtaaca
     1021 agcttgctta aatgctctcg cgtctcattt ctgctgctga gcgcgacagc gcggacgacg
     1081 taagcgccga acccccacga cgcgggacgc ccctcacccg ccggattact ttcggtgcga
     1141 tgtcccgctg cgggttatcc gcaccatgtg tggcagaccg tggggccggg atgcggggac
     1201 gatggggacg aaagcccggc atttgctgag ccagtcatcc ggcttccttc cgtcccatcg
     1261 tcggtgagtg ctgcacaaac gagacaccga gcccgtgtac gccctcctgc agcagatttg
     1321 ccacgagccc ggtccagccg gtctggtgcg aagcgccgag ccccttgccg gtgtcgccgt
     1381 cgaaatattc gtgaaagagg aggaggtcgt cgaaggcggg gccggagcgc gaccgggagt
     1441 tgccgcccca gatcgggcgc cgtccgtcgc cgccgaggag gaacaggcgg acaagccggc
     1501 gcgccacttc gtccgccgcc gaggcgagcg tcacgtaaca ccctgacccc gtcgggcact
     1561 cgatgcggaa atcgtcgcca taatagcggt ggaaccgatg cagcgactgc accagcaggt
     1621 aattgatcgg cagccagatc ggcccgcgcc agttcgagtt gccgccaaac tgattcaccc
     1681 tcgactccgc cggatcgtag cgcacctcgg ccgcatgccc gtcgatcgcg aggatgtagg
     1741 gatcggcctc gtatttcttg gatagcgagc gcacgccgta gggcgacagg aactccgcct
     1801 cgtcgagcgt gcgccgcaac agtcgcttca tgcggctgcc gcgcagcaat gacaggagat
     1861 gacgctcgcc gatgccgggc tcctcccaac gcgagacgag ccgcgcgagg tcggggcggt
     1921 tctcgagcag ccaacggagc cgtgcggtga agccggggca gcgcgcaaga aggtcgggct
     1981 ccaggacttc gacggcgaac agcggcacca gtcccacgac cgaacgcacc ttcagcggcg
     2041 cgcatcggcc gtccggaagg ctcagcatgt cgtagtaaaa cccgtcggcc tcgtcccaca
     2101 gcccgcagcc gtcggcagcc tcg
//
LOCUS       DASQVK010000314         2803 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_51377, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000314 DASQVK010000000
VERSION     DASQVK010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2803)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2803)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2803
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51377"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..773)
                     /locus_tag="VE567_06635"
     CDS             complement(<1..773)
                     /locus_tag="VE567_06635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007404065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HYZ48554.1"
                     /translation="MTPPAAAHDFVRNAGWTNFEILPLAGDASFRRYFRVVAPNRSAV
                     LMDAPAPHEDPRPFLTVAEHLIALGFSAPRTLAADLEHGLVLLEDFGDARMREVIDAA
                     PEAELRIYSDAVDLLVRLHKHRAADLPPYDEREYLREACLLPEWYAPALGLAVDNAGY
                     RAAWGEALAPLLTDHSVTVLRDYHAENIMLIEGRDGIEGLGLLDFQDALAGHPAYDLV
                     SLLQDARRDVAEALEADMLNRYLEEAGPGPGFTDTYWLLG"
     gene            complement(770..1219)
                     /gene="tsaE"
                     /locus_tag="VE567_06640"
     CDS             complement(770..1219)
                     /gene="tsaE"
                     /locus_tag="VE567_06640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HYZ48555.1"
                     /translation="MIRDLPDEAATLAFGAELASVARPGDVIALSGGLGAGKTTLARG
                     LLAALGLQGEAPSPTFAIVQTYGPPETRLPVAHIDMYRIEAPEDAEELGLDELRTDHL
                     LIVEWPERLDADQWSDALRLALEPLPDGGRRLTATTPPSWEARCMPR"
     gene            complement(1216..>2803)
                     /locus_tag="VE567_06645"
     CDS             complement(1216..>2803)
                     /locus_tag="VE567_06645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010217362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYZ48556.1"
                     /translation="ISGERRSLRVVDVPLGDAGVAGYAIDVEELEQARAAFKRFAEAQ
                     RDLLDRLSAGVVQFEADRTLSFYNQAFMRMFAMKPEWLAEAPEFARVLDRMREAGRLP
                     EVRDHRAWREERRAWFTAADEGQEENWMLPGGVHLRVVPQPLPDGGLLLIFEDRTEQV
                     ALASARDTLLRVRTATFDNLFEAIGVFAADGRLQLWNQKFRDVWEFDETFLATHPRVD
                     GLAEAAGRQLANPSRAAVIRELVRVATQERKQRSGRVALRNGRHFEFAAVPLPDGNAL
                     FTMLDISDSRRIDTALRERNDALEEADRVKTAFVANMSYELRTPLTSIGGFAEMLAGG
                     YAGDLAPTAAEYVKAILDSVARLSTLIDHVLDLTQSEAGALPLEKKSVDIRRIAREAA
                     KGAAEAAKEKSIELEVTLDRSLGTVHGDARRLRQVLDHLLNNALRFTPPGGRVLLLGD
                     GDPNNARLVISDNGPGMSPKDQARAFDRFSRGGERGNGTSLGLGLPLARQFVEAHGGT
                     FSLLSEPGQGTAVTVELPRK"
BASE COUNT          479 a          931 c          938 g          455 t
ORIGIN      
        1 ccgagcagcc aataggtatc ggtaaagcca gggcctggcc cggcttcttc cagatagcgg
       61 ttcagcatat cggcttcgag cgcttcagcc acatcgcgcc gcgcgtcctg gagcagcgag
      121 acgaggtcgt aagcggggtg gccagcgagc gcatcctgga aatcgagcag gccaaggcct
      181 tcgatgccgt cccggccttc gatcagcatg atgttttcgg cgtgatagtc gcgcaaaact
      241 gtgaccgaat ggtccgtcag cagcggtgcg agcgcctcgc cccaggcggc tctatagcca
      301 gcattgtcca cggcaagccc cagcgcaggc gcataccatt cggggagcag gcaagcctcg
      361 cgcagatatt cgcgctcatc ataggggggc agatcggcgg cgcgatgctt gtgcaggcgg
      421 acgagcaggt ccacagcgtc cgaatagatg cgcagctccg cttcgggcgc ggcgtcgatg
      481 acttcgcgca tacgggcatc accgaaatcc tcgagcagga cgaggccgtg ctccagatcg
      541 gcagcgagtg tgcggggcgc cgagaagccg agcgcaatca gatgctctgc gacggtgagg
      601 aatggccgcg ggtcttcgtg cggcgcgggg gcgtccatca agaccgcgct gcggttcggc
      661 gctaccacgc ggaaatagcg gcggaaggag gcgtcgccag caagaggcag gatttcgaaa
      721 ttggtccagc cggcgttccg gacgaagtca tgcgcggcag caggcggggt catcggggca
      781 tgcatcgcgc ttcccatgac ggcggcgttg tcgctgtcaa gcgccggccg ccgtcgggca
      841 agggttcgag cgccaagcgg agcgcatcgg accactggtc ggcgtccagg cgttctggcc
      901 attcgacgat cagcagatga tcggtacgga gttcgtcaag cccgagttcc tcggcatcct
      961 cgggcgcttc gatccgatac atgtcgatat gggcaacggg cagacgggtt tcgggtgggc
     1021 cgtaagtctg cacgatcgcg aacgtcgggc tcggtgcctc gccttgcagc cccagcgctg
     1081 cgagaaggcc gcgcgcgagc gtggtcttgc cggcacccag tccgcccgac agcgcgatca
     1141 cgtccccagg ccgcgccaca gacgccagct cagctccgaa cgcgagcgtg gccgcttcgt
     1201 ccggcaggtc ccggatcact tgcgcggcag ctcgaccgtg acggcggtgc cttggcccgg
     1261 ctccgaaagg aggctgaacg ttccgccatg cgcctcgacg aactggcgcg cgagcggcag
     1321 accgaggcca agcgaagtgc cgttgccgcg ctcgccgccg cggctgaagc gatcgaaggc
     1381 acgcgcctgg tccttcgggc tcatgcccgg gccgttgtcc gatattacca gccgcgcatt
     1441 gttcggatcg ccgtcgccga gcagaagcac gcggccgccc ggcggcgtga agcgcagcgc
     1501 gttgttgagc agatggtcga gcacctgacg aagccgccgc gcgtcgccgt gaacggtgcc
     1561 aagcgaccgg tcgagcgtga cttcaagctc gatcgacttt tccttcgccg cctcggccgc
     1621 gcctttcgcc gcctcgcgcg cgatgcgacg aatgtcgacc gacttcttct ccagcggcag
     1681 cgcgcccgcc tcgctctgcg tgaggtccag cacatggtcg atcagcgtgc tgagccgcgc
     1741 gacggaatcc agaatggctt ttacatattc ggcagctgtc ggcgccaggt cgcccgcata
     1801 tccgccggcg agcatctccg cgaatcctcc gatcgaggtc agcggcgtgc gcagctcata
     1861 gctcatattg gcgacgaaag cggtcttgac ccgatcggct tcctcaagtg cgtcgttgcg
     1921 ctcgcgaagc gccgtgtcga tgcggcggct atcgctgatg tcgagcatcg tgaacagggc
     1981 gttgccatcg ggcaaaggga cggcggcgaa ttcgaaatgc cggccattcc tgagcgcgac
     2041 gcgaccgctg cgctgcttgc gttcctgggt cgcaacgcgc accagctcgc ggatgacggc
     2101 ggcgcgcgag gggttggcaa gctgccgccc cgccgcttcc gcgagcccgt caacgcgcgg
     2161 atgcgtggcg agaaaagttt cgtcgaattc ccaaacatcc ctgaatttct ggttccatag
     2221 ctggagacgc ccgtcggccg cgaacacgcc aatcgcctcg aacagattgt cgaacgttgc
     2281 cgtgcgcacg cgcagcagcg tgtcgcgcgc gctcgcgagc gcgacctgct cggtgcggtc
     2341 ctcgaagatc agcagcagcc caccatcggg aagcggttgc gggacgacgc gcagatggac
     2401 gccgcccggc agcatccaat tttcttcctg cccctcgtcg gctgcggtga accaggcgcg
     2461 gcgctcctcg cgccaggcgc gatggtcgcg cacttcgggc aagcgacccg cttcgcgcat
     2521 ccgatcgagc acgcgcgcga actccggcgc ttccgccagc cattcgggct tcatcgcaaa
     2581 catgcgcatg aacgcctgat tgtagaaact gagcgtgcgg tccgcctcga actggaccac
     2641 cccggccgac agccgatcga gcaagtcgcg ctgcgcctct gcaaaacgct tgaacgcggc
     2701 gcgggcctgt tcgagctcct cgacgtcgat cgcatagccg gcaacgcctg catcgccgag
     2761 gggtacgtcg accacgcgga ggctacggcg ctcgccgctg atc
//
LOCUS       DASQVK010000315         6807 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_209829,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000315 DASQVK010000000
VERSION     DASQVK010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6807)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6807
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209829"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            63..1220
                     /locus_tag="VE567_06650"
     CDS             63..1220
                     /locus_tag="VE567_06650"
                     /inference="COORDINATES: protein motif:HMM:NF015863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-associated TM helix domain-containing
                     protein"
                     /protein_id="HYZ48557.1"
                     /translation="MTIKRTLLRLHVWLGITIGFFWALQGLTGAVLMFNRDGQTAWFA
                     GHQQGPILPFDTIIARAGAATHAKVTHLETFGPDPALMYAYHDTPAGERVAVVDGRTG
                     AVLDVRDLEAPLPVGGSTFPWLLRLHEALLGGDTGQLVVGSSGILLLSSILVGLWNAW
                     PQRSWRDSFRTSLWRTPTRQLIGWHRMIGLIVVPALVVTFLCGIYLAFAPKLRPLLAE
                     VAGYQMPFKAKPQSEAPRVAISAERAFQLARAHFPGATMVRLVLPTAKSPVYLFRLLQ
                     PDDERRWAGTSTIAIDPATGAVVNAYDSRNGPLANRFTDEIYTIHTGDLGGAPGRALM
                     LLAGLSLPFFYVTGLTTWLWARQRKRRNRAGQAGTPAIGRLAGEGGITDQV"
     gene            1256..2029
                     /locus_tag="VE567_06655"
     CDS             1256..2029
                     /locus_tag="VE567_06655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008066806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48558.1"
                     /translation="MIARFLAPAATMLALACPTVATAAPEEIQVYMDEMGAPGEIGLD
                     VHNSYVLSGDKTPAYPGEQQSVHRYRITPEFSLGLSRAFELGAYLPLATIDHGGAFRI
                     QGVKLRLKYLVPRPADSHWFYGLNFEIGRVGHSLDANPYNAELKGIAGTHQGKWTLAA
                     NLNFDFKVSGPAPAPASLELATKANFAVTPKFALGIENYTGLGEVRGLGRFGSSEQTT
                     YVTADTSIGKWDLNLGVGRGYGANPDRWIVKAIVGVPFR"
     gene            complement(2034..2432)
                     /locus_tag="VE567_06660"
     CDS             complement(2034..2432)
                     /locus_tag="VE567_06660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SET domain-containing protein-lysine
                     N-methyltransferase"
                     /protein_id="HYZ48559.1"
                     /translation="MMMVDTELRPSTIEGLGVFLLQPLAKGALVWRFDSRIDRVYSED
                     EIASMPQRSQEYLRRYSTWHEGTRVWVLCGDNGRYFNHADAPNTISDGVAFGTDVAAF
                     DLQAGAELTSNYSAICDHFRRNGMPFEQRA"
     gene            complement(2655..4082)
                     /locus_tag="VE567_06665"
     CDS             complement(2655..4082)
                     /locus_tag="VE567_06665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016746627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HYZ48560.1"
                     /translation="MSRRNVRGPNFALAALLLAGCSLAPDYIPPTAAPPSAFKEMPTG
                     WTTATPLDASPRGPWWTMFGDPVLNALEDRIEGASPTLAAAVARYDAARATAGEAAAD
                     LYPRVDAATTLVRERTSARRPGASTSSRATDATVAASLSYEIDLWGRVRNSVRAARVT
                     AEASAADLESVRLSLQASLADAYIRLRGLDAQAALLRETVGAYRKALELTQARQEGGA
                     ASGLDVSRAQTLLSDARAQISDVANQRAATEHEIAALVGALPSDLTLAAVGTDLAPPP
                     AVPVAAPAALVQRRPDVAAAERRMAAANAEIGVARAPLFPDLSLGAATGFEASHGSLL
                     SSPAAFWALGPLSAALDLFDGGRRNARIRISRAHYDEAAASYREATLTAFREVEDQLA
                     AARLLEMQALDQGAAAAAAGRSSDLALTRYREGASNYLEVVAAQTAALESRRRELAVR
                     TLRNRTAVALVRALGGGASWPVSVK"
     gene            complement(4054..5202)
                     /locus_tag="VE567_06670"
     CDS             complement(4054..5202)
                     /locus_tag="VE567_06670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HYZ48561.1"
                     /translation="MSEEIRLPRLKRAGLLAAVVAIGVAAAGIAARSSADHQLAATAQ
                     EAAIPTVAVVRPKPGGGDSDLVLPGNVQAFNSAPIFARTNGYVRRWLVDIGDPVQAGQ
                     TLAILDAPEIDQQLAQARADYQTAVANQRLAATTARRWNTLLQKDAVSRQEFDEKAGD
                     YAAKSAVANAQMANVRRLKALQGFERLAAPFAGVVTSRTAQIGALVTSGTAASQPLFT
                     VSDTHRMRVYVRVPQNFSAQVHPGLHGNLTVPEYPGRNFDVVIVRTAKAVDPQSGTVL
                     VELQAQNADRALQPGAYAQVSFRLVSGASTLRLPGSAILFREAGPTVVAVGPNNRVRL
                     RPVKLGRDQGKEVEILSGLTGAERIVDTPPDAIESGDQVHVEAERARP"
     gene            complement(5195..>6807)
                     /locus_tag="VE567_06675"
     CDS             complement(5195..>6807)
                     /locus_tag="VE567_06675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008831475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYZ48562.1"
                     /translation="RYYGALLGQALASRKPFVLGFLGLVVASFALTPFLGRDFFPHVD
                     SGQIMMHVRAPVGSRVEDTASQFDRIQRRIRQIIPSNELLSVADNIGLPVSSINTIYN
                     NSGTIGPQDGDMLIALAKGHRPTEDYVRKLRQELPQSFPGTTFSFLPADITSQILNFG
                     APAPIDVQISGTKMENNAAHAEKLLRRLRTIPGLADARIQQPARAPQLNVDIDRSRIG
                     QYGLTERDVTASLATSLAGTGTTEPVYYVNPDNGVSYSVVTQAPEYKVGSMSALEGIP
                     ISGRDGTPRQTLGGIARVSRSSTLPVVNQYDVQPVIDIFAAPSGRDLGAVSRDVQQAI
                     DALAKEQPKGVTVTMRGQYQTMNAAFSGLGLGLLSAIVLIYLLIVVNFQSWLDPFVII
                     TALPAALAGIVWTLFGTGTTLSVPALTGAIMCMGVATANSILVVSFARERLAELGDPT
                     QAALEAGLVRFRPVLMTALAMIIGMLPMALGLGEGGEQNAPLGRAVIGGLVVATVATL
                     FFVPAVFALVHRRRRCDQAPQELQLAHV"
BASE COUNT         1224 a         2138 c         2272 g         1173 t
ORIGIN      
        1 tttctccgca ccgacgccgc ccaggcgatc gtcgcccgcg gcccctatcg acggatcatg
       61 ccatgaccat aaaacgcacg ctgcttcgcc tccatgtttg gctcggaatc acgatcggct
      121 tcttctgggc gctgcaaggg ctgactggcg ccgttctgat gttcaaccgc gacgggcaga
      181 cggcgtggtt cgccgggcat cagcaaggcc cgatactgcc gttcgatacg atcatcgccc
      241 gggccggcgc ggcgacccac gcaaaggtga cgcatctgga gacgtttggc ccggatcctg
      301 cccttatgta cgcctatcac gacacgccgg ctggggaacg agtggcggtg gtcgacggtc
      361 gcaccggcgc ggttctggac gtccgcgatc tcgaggcgcc gctgccggtc ggcggatcaa
      421 ccttcccctg gctgctgcgg ctgcacgagg cactgttggg cggcgacacc ggccagctcg
      481 tggtgggaag ctcgggaatc ctgctgttgt cgagcatcct cgtcggcctg tggaatgcct
      541 ggccgcagcg gagctggcgc gactcgtttc gaacgtcgct gtggcggacg cctacgcggc
      601 aactgatcgg ctggcaccgg atgatcggtc taatcgtcgt tccggcgctt gtggtcactt
      661 ttctctgcgg catctatctc gccttcgcac cgaagctgcg tccgctgctc gccgaggttg
      721 ccggctacca gatgccgttc aaggccaagc cccagagcga ggcgccgcgc gtcgcaatat
      781 ccgccgaacg cgccttccag ctcgcccgcg cgcatttccc cggcgcgaca atggtgcggc
      841 tggtgctccc gaccgcgaaa tcgccagtct atctcttccg tctgctgcag cccgatgacg
      901 agcggcgctg ggccggcact tcgacgatcg cgatcgatcc ggcgaccggg gcagtggtga
      961 acgcctatga ttcccgcaac gggccgctcg ccaatcgttt caccgacgaa atatatacca
     1021 tccataccgg cgacctcggc ggggcgcccg gccgggccct gatgctgctg gcggggctgt
     1081 cgctgccatt tttctatgtt acgggcctta ccacttggct atgggctcgg caacggaagc
     1141 ggcgaaaccg cgccggccag gccggtacgc cggctatcgg tcgccttgca ggggaaggcg
     1201 gtattacgga tcaggtgtga aacggcgctc gaagcgggtc aaaacaggag ctttcatgat
     1261 tgcacgtttc ttggcgccgg cggcgacgat gctggcgctg gcctgcccca cggtcgccac
     1321 ggccgcgccg gaagagatac aggtctatat ggacgagatg ggtgcgccgg gcgaaatcgg
     1381 gctcgacgtt cacaacagct atgtgttgag tggcgataaa acgcccgcgt atccgggaga
     1441 acagcagtcg gtccatcgct atcggatcac gccggaattt tcactgggcc tgtcgcgggc
     1501 attcgagctt ggcgcctatc tgccgctggc gacaatcgat catggcggcg ctttccgcat
     1561 ccagggcgtg aagctgcgcc tcaaatatct cgtaccccgt ccagccgata gccattggtt
     1621 ctacggcctt aatttcgaga tcgggcgcgt tggtcattcg ctcgacgcca acccatataa
     1681 tgcggagctg aaggggatcg ccggcactca tcagggtaaa tggacgctgg cggccaatct
     1741 gaatttcgat ttcaaggtat cgggcccggc gccggccccg gcctcgctcg agctggcgac
     1801 caaggcgaac tttgcggtca cgcccaaatt cgcgctgggc atcgagaatt acaccggcct
     1861 gggcgaagtc cgcggcctgg gacgcttcgg cagctccgaa caaacgacct acgtcactgc
     1921 ggacaccagc atcggcaaat gggacctgaa tctgggcgta gggcgcggtt atggcgccaa
     1981 ccccgatcgt tggatcgtca aggcgatcgt cggcgtgccg ttccgctgaa gaattaggcg
     2041 cgctgctcga acggcatgcc attgcgccga aaatggtcgc agattgcgga ataattcgat
     2101 gtaagctcag caccggcctg gagatcgaac gctgcgacgt cggtcccaaa ggcgactccg
     2161 tcagaaatcg tattcggagc gtctgcgtgg ttgaagtagc gcccattgtc gccgcagaga
     2221 acccagacgc gggtgccttc gtgccaagtc gaatatcgcc gtagatattc ttgggaacgc
     2281 tgcggcatac tggcgatctc gtcctcggaa tagacccgat cgatacggga gtcgaagcgc
     2341 caaaccagcg cacccttggc aagcggttga aggaggaaga ccccaagtcc ctcgatcgtg
     2401 cttggacgca gctcggtgtc gaccatcatc atacaacgac cctcctgaac gccgtccaac
     2461 aagcgtgcat gaatgtcgtt ccttgcccga gtcataagaa tgggagggcg ttattcggcc
     2521 tcaagaaata cggtgggccg ggcgtcggtg ccgagcggga tcggcgaccc ctatggccct
     2581 gaagacgtgc tgcaatcccg atcccatgct gccggttcgc ggcgccagaa cttaccgcgt
     2641 ctttgttcca gggttcattt gactgaaaca ggccatgacg cgccgccgcc caaggctcgc
     2701 acaagagcca cggcggtgcg gttgcgcagc gtgcggacgg cgagttcacg ccgccggctc
     2761 tccaatgctg cggtctgtgc ggcgacgact tccagataat tggaagcgcc ctcccgatac
     2821 cgcgtgaggg caagatcgct gctacggccc gcggcggcgg cggcagcgcc ctgatcgagt
     2881 gcctgcatct cgagcagtct tgcggcggca agttggtcct cgacctcccg gaacgccgtg
     2941 agcgtcgcct cccgatagct ggcagccgct tcgtcatagt gggcgcgcga aatgcggatt
     3001 cgagcgttgc gacggccgcc atcgaacagg tcgagagcag cggagagggg cccaagcgcc
     3061 cagaaggctg caggtgagct gagaagcgag ccgtgggatg cttcaaagcc tgttgccgcg
     3121 ccgagggaca ggtcaggaaa tagaggagcg cgcgcgacgc cgatctccgc attggctgcg
     3181 gccatgcggc gctccgcggc ggccacgtcc ggtcgccgct ggacgagcgc ggcaggcgcc
     3241 gcaacgggaa ccgcgggcgg tggggcgaga tcggtgccga ctgcagccag cgtcaggtcg
     3301 gacggaagcg cgcccactaa tgccgcgatt tcgtgttcgg tggcggcgcg ctgatttgcc
     3361 acgtcggaga tctgcgcccg cgcgtcggat agcaatgtct gggcgcggct tacgtcgagg
     3421 ccggacgcgg cgccgccttc ctgtcgcgcc tgagtaagct cgagtgcctt ccgataggcg
     3481 ccgaccgttt cgcgcagcag cgcggcctgg gcatcaagcc cgcgtaaacg aatatacgcg
     3541 tccgcgagag aggcctgaag actgaggcgc accgattcaa gatcggccgc gcttgcctcc
     3601 gcggtcacgc gggcggcccg cacggagttc cgcacacggc cccacagatc gatttcgtag
     3661 gacagcgagg cggcaacagt cgcgtctgtg gcgcgagatg aagtgctggc acccggtctg
     3721 cgagcggaag tacgctctcg aacaagggtc gtcgccgcgt cgactctagg atagaggtcg
     3781 gcggctgcct cgccggcagt cgcgcgggca gcatcgtagc gcgcgacggc ggcagcgagc
     3841 gtggggctgg cgccttcgat ccggtcctca agcgcattca ggacaggatc gccgaacatc
     3901 gtccaccaag gtccgcgtgg actggcgtcg agcggcgtgg cggtggtcca gccggtcggc
     3961 atctccttga atgcggaggg aggggcagcc gtcggcggga tgtagtcggg tgccagcgaa
     4021 cagcccgcga gcagaagcgc cgcaagggcg aaattagggc cgcgcacgtt ccgcctcgac
     4081 atgaacctgg tcgccgctct cgatcgcgtc cggcggcgtg tcgacgatcc gctcggcccc
     4141 ggtcaggccg gagagaatct cgacctcctt gccctggtca cggccaagct tgacggggcg
     4201 gagacgtacg cggttgttcg ggccaactgc gacgaccgtg ggtccggcct cgcgaaacag
     4261 gatagcgctg cctgggagtc gcagcgtgct ggcgcccgac acaagccgga aactcacttg
     4321 cgcataggcc ccgggctgca gcgcgcggtc agcattctgt gcctggagct cgacgagcac
     4381 cgtaccggat tggggatcaa cggccttggc ggtgcggacg atcaccacgt cgaagtttcg
     4441 cccgggatac tccgggacgg tcaggttgcc atgaaggcct ggatgaacct gcgccgaaaa
     4501 gttctgcggc acgcgtacgt aaacgcgcat gcggtgcgta tctgaaacgg tgaaaagcgg
     4561 ctgcgaggcg gccgtgccag aggtcacaag cgcgccgatt tgcgcagtgc ggctcgtcac
     4621 gactccggca aagggtgccg ccagccgttc aaagccttgc aacgccttca ggcggcggac
     4681 attggccatc tgagcgttgg cgaccgcgga cttagccgca taatcgcccg ccttttcgtc
     4741 gaattcctgc cgcgagacag cgtccttttg cagaagcgta ttccatcgcc gtgcggtggt
     4801 ggcggccaga cgctggttgg cgaccgcagt ttgatagtcg gcgcgtgcct gggcaagctg
     4861 ctgatcgatc tcgggagcat ccaggatcgc gagagtctgg ccggcctgga ccgggtctcc
     4921 gatgtcgacg agccaccgcc gcacataacc gttggtgcgc gcgaagatcg gcgcgctgtt
     4981 gaaggcctgc acattgccgg gcagcacaag atcggaatcg cccccacccg gcttcggtcg
     5041 gacgactgca accgtgggaa tcgccgcctc ctgggccgtg gcagcgagct gatgatcggc
     5101 gctgctgcgc gctgcgatgc cggccgcggc gacgcctatc gccacgacag ccgcgagcag
     5161 gcccgctctc ttcaagcggg gcaaccggat ttcctcagac atgggcgagt tgaagctcct
     5221 gcggagcctg gtcgcaacgt ctgcgacggt ggaccagggc gaaaacggcg gggacgaaga
     5281 acagggtggc gactgtcgcg acgacgaggc cgccgatcac cgcacggccc agcggcgcat
     5341 tctgctcgcc gccttcgccc agtccgagcg ccatcggcag cattccgata atcatcgcaa
     5401 gcgccgtcat cagcaccggg cggaagcgga ccagcccggc ctccagggcc gcctgggtgg
     5461 ggtcgcccag ctccgccagc cgttcgcgcg cgaagcttac gaccaggatc gagttggcgg
     5521 tcgcgacccc catgcacatg atggcgccgg tgagcgcagg gaccgatagc gtcgtcccgg
     5581 ttccaaacag cgtccagacg atgccggcga gtgccgcagg gagcgcagtg atgatcacga
     5641 aaggatcgag ccagctttgg aaattgacga caataagcag atagatgagc acgatcgcac
     5701 tcagtaggcc gaggccaagg cccgagaagg cggcgttcat ggtctggtac tggccgcgca
     5761 tggtgactgt cacgcccttg ggctgttcct tcgcgagcgc gtcgatcgcc tgctgcacat
     5821 cgcgggaaac ggccccgaga tcgcgacctg acggcgctgc gaagatgtcg ataaccggct
     5881 gcacatcgta ctggttgacg accggcagcg tgctgctgcg gctcaccctg gcaatgccgc
     5941 ccagcgtctg ccggggcgtg ccgtcgcggc cggaaatcgg aattccctcc agcgcggaca
     6001 tcgagccgac cttgtactca ggagcttggg tcacgacgga atatgaaacg ccgttgtcgg
     6061 ggttgacata atagaccggc tccgtcgtgc cggttccggc gagcgacgtg gcgaggctgg
     6121 ccgtcacgtc ccgctcggtc aaaccatatt ggccgatgcg cgagcggtcg atgtcgacat
     6181 tcagctgcgg cgcacgtgcc ggttgctgga tgcgggcgtc cgccaagccg gggatggtgc
     6241 gcaggcggcg caacagcttt tcggcgtgcg cggcattgtt ctccatcttg gtgccgctga
     6301 tctggacatc gatcggtgcc ggggcgccga agttcaggat ctgactggtg atgtcggccg
     6361 gcaggaatga aaaggtcgtc ccaggaaagc tttgcgggag ttcctgcctt aatttcctga
     6421 cgtaatcttc ggtcggccgg tggcctttgg caagggcgat cagcatgtca ccgtcctgcg
     6481 ggccgatcgt ccccgaatta ttgtagatcg tgttgatgga actgaccggc aggccgatat
     6541 tgtccgcgac cgaaagcagc tcattggacg ggatgatctg gcggatacgg cgctggatac
     6601 gatcgaactg cgacgccgta tcctcaacac gtgagcccac cggcgcgcgc acatgcatca
     6661 tgatctgccc ggaatccaca tgcggaaaga agtcacgacc gagaaagggc gtcagcgcaa
     6721 aagacgcaac caccagcccc aggaatccca gaacgaacgg cttgcgcgag gcgagcgcct
     6781 ggccgagcag cgcgccataa tagcgcc
//
LOCUS       DASQVK010000316         2406 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_273011,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000316 DASQVK010000000
VERSION     DASQVK010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2406)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2406)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2406
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273011"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..492)
                     /locus_tag="VE567_06680"
     CDS             complement(<1..492)
                     /locus_tag="VE567_06680"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HYZ48563.1"
                     /translation="MTEAPQPGLARRLGLFDVTMLVMGGIIGSGIFVTPAEVARHVQT
                     PTLIVGAWLIGGAIAMAGALVYAELAARRPDVGGQYAYLRDAWGPMPAFLYGWSLLLV
                     IQSGGMAAVAITFARYALDLAPLNLPEGAVAVAALALLTAINCLGVRAGGTAQSLLMV
                     LKIG"
     gene            complement(489..1205)
                     /gene="dapB"
                     /locus_tag="VE567_06685"
     CDS             complement(489..1205)
                     /gene="dapB"
                     /locus_tag="VE567_06685"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013846975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HYZ48564.1"
                     /translation="MTSIGILGAAGRMGRAIAEAADAAGVPVAGGVDQGGDVATLASG
                     CHVLIDFSVPDALAEHLAAAREAKRPIVIGTTGLAPEHHALIDATAREVAVLQSANMS
                     LGVNLLAALVEQAAARLGPDWDIEILEMHHRHKIDAPSGTALLLGDAAARGRDVALGQ
                     PALDRNGKRREGAIGFASLRGGSVAGDHQVILATEGERLELGHRAESRIIFARGAIRA
                     ALWLAGKGPGRYAMADVLGL"
     gene            1289..1684
                     /locus_tag="VE567_06690"
     CDS             1289..1684
                     /locus_tag="VE567_06690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HYZ48565.1"
                     /translation="MRYVLLALALFALTSSARAAPSDWGAAHQIEIRLANFSFTPNKI
                     ELKSGGAYRLHLVNTANGGHNFDAPEFFAAAQVAPSDQARIRKGTVELKKGESVDIRL
                     VAPAPASYKLRCSHFLHSSFGMTGEILVR"
     gene            complement(1688..1861)
                     /locus_tag="VE567_06695"
     CDS             complement(1688..1861)
                     /locus_tag="VE567_06695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48566.1"
                     /translation="MKNETEADRFDAIEQEQHNLRESIARSKELARRSQEILDDHRRK
                     HANTDDDDSGQAA"
     gene            1995..2114
                     /locus_tag="VE567_06700"
                     /pseudo
     CDS             1995..2114
                     /locus_tag="VE567_06700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020819207.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent protein deacylase"
     gene            complement(2165..>2406)
                     /locus_tag="VE567_06705"
     CDS             complement(2165..>2406)
                     /locus_tag="VE567_06705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48567.1"
                     /translation="EEPVAVERMWVIVRERVGDQYLGILDNDPYAISENDELWSGIEL
                     PFSPRHVVNIERAGAAEVSQPVPLPRRFWDRTRNH"
BASE COUNT          408 a          844 c          745 g          409 t
ORIGIN      
        1 gccgatcttc agcaccatca acaggctttg cgcggtgccc ccggcgcgca cgcctaggca
       61 gttgatcgct gtcagcagcg ccagcgccgc caccgccact gcgccttcgg gcaggttcag
      121 cggcgcgaga tcgagcgcgt agcgggcgaa cgtgatcgcg actgccgcca tgccgcccga
      181 ctggatcacg agcagcagcg accagccgta aagaaaggcc ggcatcggcc cccaggcgtc
      241 gcgcagatag gcatattggc cgccgacatc gggccgccgc gccgcgagtt cggcatagac
      301 cagggcgccg gccatcgcga tcgcgccgcc gatcagccag gcgccgacga tcaaggtcgg
      361 ggtctgcacg tgccgcgcca cctcggccgg agtcacgaaa atgcccgagc cgatgatgcc
      421 gcccatcacc agcatcgtca cgtcgaacag gccgagacgg cgggcgagcc cgggctgcgg
      481 cgcttcggtc acaggccgag cacgtccgcc atcgcgtagc ggccggggcc cttccccgcg
      541 agccagagcg cggcgcgaat ggcgccgcgt gcgaagatga tgcggctctc ggcccggtga
      601 ccgagttcca gccgctcgcc ttcggtcgcg aggatcacct gatggtcgcc cgccaccgat
      661 ccgccgcgca ggctggcaaa gccgatcgcg ccttcccgcc gtttcccgtt gcggtcgagc
      721 gcgggctggc cgagcgccac gtcccgtcct cgcgccgctg cgtcgcccag cagcagcgcc
      781 gtgccgctcg gcgcatcgat cttgtggcga tggtgcattt ccaggatctc gatgtcccag
      841 tcgggcccca gccgcgccgc cgcctgctcg accagcgccg ccagcagatt gacgcccagc
      901 gacatgttcg ccgactgaag caccgccacc tcgcgcgcag tcgcgtcgat cagcgcatga
      961 tgctcgggag caagcccggt cgtcccgatc acgatcggcc gctttgcctc gcgcgccgcc
     1021 gcaagatgct cggccaacgc atcgggcacg gaaaaatcga tcagcacatg gcagccagag
     1081 gcaagagtag cgacgtcgcc gccctggtcg acgccgcccg ccaccggcac gcccgccgca
     1141 tccgcggctt cggcgatcgc gcgccccatg cggccggccg cgccaaggat tccgatgctt
     1201 gtcatcccgc cctgttcggc gaatttccgg ggatgaacaa gcaccccgaa acgattacaa
     1261 tcgaatctgc catcgggaga actgcctcat gcgttacgtg ctgctcgcgc ttgccctgtt
     1321 tgccctcacg tcatccgcgc gtgcagcgcc gtccgattgg ggcgccgcgc atcagatcga
     1381 aattcgcctc gccaatttct cgtttacgcc gaacaagatc gagctgaaga gcggcggggc
     1441 ctatcgcctt cacctcgtca acacggcaaa tggaggccat aatttcgacg cgcccgaatt
     1501 cttcgccgct gcccaggtgg cgccgtcgga ccaggcgcgt atcaggaaag gcacggtcga
     1561 gctgaaaaaa ggcgagagcg tcgacatccg cctcgtcgcc cctgcgccgg ccagctacaa
     1621 gctccgttgc tcgcacttcc tgcattcgag ctttggcatg accggggaaa tcctggtccg
     1681 ttgactgcta ggcggcctgg ccgctgtcgt cgtcgtccgt gttcgcatgc ttgcggcggt
     1741 gatcgtcgag gatctcctgc gagcgccgcg ccagttcctt cgaccgcgcg atgctttctc
     1801 gaaggttatg ctgctcctgt tcgatcgcat cgaagcgatc ggcctctgtc tcgttcttca
     1861 cgttccaaag ctcgtcaacc tgaccagatg cgggccctta ttctagcttc cccggccgaa
     1921 acaagccggt tttgccacga cccgatggct gtccgcgctt agctgaggcg cgccgatcgg
     1981 ctagacggga gcgcatgcgc gagatcgaga acatcgtcat cctcaccggc gcgggcgtct
     2041 ccgccgaaag cgccctggcc accttccggg gccccgacgg cctgtgggaa gggcaccggt
     2101 tcgagaatgc atgtcttttg tggacagtat gagcggatga ccgcaatcga cccgttgcgg
     2161 acgttcagtg atttcgagtt cgatcccaaa agcgccgggg cagcgggacc ggctgtgaca
     2221 cctcggcagc gcccgctcgt tcgatgttga caacgtggcg gggagagaag ggaagctcta
     2281 tgccactcca aagctcgtcg ttttcgctaa tcgcgtaagg atcattgtcg aggataccaa
     2341 gatactggtc gcctactcgt tcccgaacaa tgacccacat ccgttcgaca gcgacgggtt
     2401 cctctt
//
LOCUS       DASQVK010000317         2146 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_273036,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000317 DASQVK010000000
VERSION     DASQVK010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2146
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273036"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..276
                     /locus_tag="VE567_06710"
     CDS             <1..276
                     /locus_tag="VE567_06710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48568.1"
                     /translation="SWAVRLMGLSPVIKLAVIPLLIDQFERSGRGHWTLIAFVASCSL
                     LMGFSWLDYLVSGLHIATDKAPAFPSGITSTRARNSGWQFSGLRRYC"
     gene            270..911
                     /locus_tag="VE567_06715"
     CDS             270..911
                     /locus_tag="VE567_06715"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HYZ48569.1"
                     /translation="MLIFIQQRRMAAAIACGALLLGFLANMAFVVVARTAFIFMPVLV
                     VAFAFHFFSPRARNIALVAAVGAATLAIVGSPYLRYRVERTIYDYRLNERTDIATSYG
                     ERLFYWRSSIKSIEEAPLFGHGTGSTKQIFEREAGGKSGEWANLVRNPHNQTLYVAVQ
                     WGLLGVILLWLMWYYHLALFLDRTLVSWMGLIVVVQNIVSSLLNSHLFDFHEG"
     gene            complement(1004..1837)
                     /locus_tag="VE567_06720"
     CDS             complement(1004..1837)
                     /locus_tag="VE567_06720"
                     /inference="COORDINATES: protein motif:HMM:NF013706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HYZ48570.1"
                     /translation="MLNWRPHNNNIREAATMDKILEAAKIIAAARRNRAPLEPFSPEL
                     APADEAEGYRIQRALHDLLLPQTGAMVGYKIGCTSAVMQEYMNINHPCAGGVFAKGVY
                     DSGAKLKVADYVRVGVECEIAVRLARDLAPTEAPFTAEWMAEAVEAYHPAIEIVDDRY
                     VKWETMDALTLIADDFFAAGCVLGAPVARAGAPDLHEIIGRALINGKEAGRGTGADVL
                     GHPHNALAWLANQLAAEGRGLHAGQIVLTGSLIKTVWLAAGDSVAMELKGLGKVKATF
                     D"
     gene            complement(1882..>2146)
                     /locus_tag="VE567_06725"
     CDS             complement(1882..>2146)
                     /locus_tag="VE567_06725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde reductase"
                     /protein_id="HYZ48571.1"
                     /translation="ILEIAKVLRRELGRSARRVPRFQAPDWMVRLAARHNPMLRYALP
                     MLGKIRRATSAKARQRLGWTPRGNEETILATAESLIRLGLVKP"
BASE COUNT          328 a          693 c          687 g          438 t
ORIGIN      
        1 agctgggcgg tgcggctgat gggcctctcc ccggtgatca agctcgcggt catcccgctg
       61 ttgatcgacc aattcgaacg gtccgggcgc gggcactgga ccttgatcgc attcgtagcg
      121 tcctgttcgc tgctgatggg attttcctgg ctcgactatc ttgtttccgg cctgcacatc
      181 gcaaccgaca aggcgccggc gttcccgtca ggaattacat cgaccagagc caggaattcg
      241 ggctggcagt tttcgggctt gcgccgctat tgctgatctt catccagcaa cggcgaatgg
      301 cggcggcgat cgcctgcggc gcgctgctgc tcggatttct cgccaacatg gctttcgtcg
      361 tggtggcccg cactgccttc atcttcatgc cggtgctggt ggttgcgttc gcgttccact
      421 ttttcagtcc cagagctcgc aacattgcgc tggtggccgc ggtcggcgct gccacgctcg
      481 ccatagtggg gtcgccttat ctgcgctacc gcgtcgagcg aacgatctat gactacaggc
      541 tcaatgaacg caccgatatc gccacctcgt acggcgagcg cctgttctac tggcgctcgt
      601 cgatcaaatc gatcgaggaa gccccgttgt tcgggcacgg caccggctcg accaagcaga
      661 ttttcgaacg cgaggccggt ggcaagagcg gcgaatgggc caatctggtc cgcaatcccc
      721 acaaccagac gctctacgtg gccgtgcagt ggggcctgct cggcgtcatc ctgctatggc
      781 tgatgtggta ctatcacttg gcgctgttcc tcgaccgtac cctggtgtcc tggatgggat
      841 tgatcgtggt cgtgcagaac atcgtcagtt cgcttctcaa ttcccatctg ttcgatttcc
      901 acgagggttg actgtacgtg ctcggcgtcg ccggtgggac ggtgctcgcg aaacgaaggc
      961 tcgagcattc cgccgaatcc ggcggctgat gcgcgcggtc aaatcagtcg aacgtcgcct
     1021 tcactttgcc gagccccttg agttccatcg ccacgctgtc gccggcggca agccacacgg
     1081 tcttgataag gcttccagtc agcacgatct gacccgcatg cagtcccctg ccttcggcgg
     1141 caagttggtt ggcaagccag gcgagcgcgt tgtgcggatg gccgagcacg tcggcgccgg
     1201 tgccgcggcc ggcctccttc ccgttaatga gcgcgcggcc gatgatttcg tgcaagtcgg
     1261 gcgcgccggc gcgcgcaacc ggcgcgccca gcacgcagcc ggcggcgaag aaatcgtcgg
     1321 cgatcagcgt cagcgcgtcc atcgtctccc atttcacata gcgatcgtcg acgatctcga
     1381 tcgcggggtg ataggcctcg accgcttcgg ccatccattc ggcggtgaat ggcgcttcgg
     1441 tcggcgcaag atcgcgcgcg aggcgcaccg cgatctcgca ttcgacaccg acgcggacgt
     1501 aatcggcgac cttcagcttg gcgccgctgt catacacccc cttcgcgaac accccgccag
     1561 cgcaagggtg gttgatgttc atgtattcct gcatcaccgc gctggtgcag ccgatcttgt
     1621 aaccgaccat cgcgccggtc tgcggcagca gcagatcgtg cagcgcgcgc tggatgcgat
     1681 agccttcggc ttcgtcggcg ggggcgagtt cgggcgagaa cggctccagc ggcgcgcggt
     1741 tgcgccgggc cgcggcaatt atctttgcgg cctcgagaat tttgtccatc gtcgccgcct
     1801 cccggatatt gttgttgtgc gggcgccagt tcagcaccgc cggggacgct tgacaagcgc
     1861 atcgcgccgg ggacgtcgcg cttatggctt gacgaggccg agccggatca ggctttcggc
     1921 ggtcgcaagg atcgtctcct cattgccgcg cggcgtccag ccgagccttt gtctggcctt
     1981 ggcgctggtg gcgcggcgga tcttgccgag catcggcagc gcgtagcgca gcatcgggtt
     2041 gtgtcgcgcc gcaaggcgga ccatccagtc gggcgcctgg aaccgcggca cccggcgcgc
     2101 agaacggccg agctcgcgcc gcagcacctt tgcgatctcg aggatc
//
LOCUS       DASQVK010000318        12647 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_20325, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000318 DASQVK010000000
VERSION     DASQVK010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 12647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12647
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20325"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(15..1382)
                     /gene="radA"
                     /locus_tag="VE567_06730"
     CDS             complement(15..1382)
                     /gene="radA"
                     /locus_tag="VE567_06730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HYZ48572.1"
                     /translation="MAKPQKRYVCQVCGSVSPKWAGQCVDCGEWNTLVEDAGAVVTPF
                     QARHNLQSGGRAIDLVGLNADVPLPPRLPTGIAELDRALGGGFVAGSATLIGGDPGIG
                     KSTLLLQATAKLASGGKSVAYVSGEEAADQVRLRARRLGLGQAPVLLAAATSVRDILT
                     TLQTTAPDLLVIDSIQTMHSDLIEGAPGTVSQVRASAGELIRFAKERGTAAVLVGHVT
                     KDGSIAGPRVLEHMVDTVLSFEGERSHQYRILRAIKNRFGGTDEIGVFAMGDQGLDEV
                     SNPSALFLTHRDENVSGAIVFPALEGTRPVLVEIQALTVRLASGATPRRAVVGWDSGR
                     LAMILAVLEARCGLSFSTAEVYLNVAGGYRISDPAADLAVAAALVSALSDRPLPSDAV
                     AFGEIALSGEVRPVAHGPLRLKESAKLGFERALVPTSVKDGAGVKLSGFARLGGFVDH
                     LLGRG"
     gene            complement(1416..2732)
                     /locus_tag="VE567_06735"
     CDS             complement(1416..2732)
                     /locus_tag="VE567_06735"
                     /inference="COORDINATES: protein motif:HMM:NF016994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="erythromycin esterase family protein"
                     /protein_id="HYZ48573.1"
                     /translation="MPTDTLTRHTVELIAGATEPLPEIDEPAFGSFFDRFGDARVVCL
                     GEASHGTSEFYRARAAITRRLIERHGFTMVAVEADWPDAAAIDRAVRGKPAPPEAEMP
                     FRRFPTWMWRNAEFAAFLGWLRDYNRSAAAQVSFHGLDLYNMNASIEAVIGYLDRTDP
                     EAASEARRLYGCLKPWKEQPAIYGRIALSEGYGRCEKAVVRMLRELFAKQQSYVDGDP
                     DAFIDAAQNARLIANAEAYYRAMYHGSAASWNLRDEHMADTLALLLRWKGPDAKAVVW
                     AHNSHIGDARFTDMGEQREELNLGQLVREAHGEEARLIGFGTHAGTVAAADDWDAPMK
                     IKQVNPSRPDSYERLMHDSGVERFLLDLREGEHDEAREALMEQRLERYIGVIYRPDTE
                     RWSHYSEATLPKQYDAFVWFDRTQAVTALPGAEEHGSTDETWPFGL"
     gene            complement(2782..4545)
                     /locus_tag="VE567_06740"
     CDS             complement(2782..4545)
                     /locus_tag="VE567_06740"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HYZ48574.1"
                     /translation="MRSFLRGSEPRDIALPKLWATNVYHDLGYSSALNTPVPGVQPNN
                     PLTVHIQAVSNDTDYLAGRMWGMYGDKTSPANAYGSQAGEAWAAGYTGSTKVAIGVVD
                     SGVDYTHPDLYSNIWLNQGEIPSSMRSLLVDTDGDKLITFRDLNAPANGGLVSDLNGN
                     GHIDAGDLLKDARWANGVDEDGNGYVDDLVGWDFANNDNNPMDDQGHGTHVSGTIAAR
                     GGDGIGVAGVSWNTEIVALKFMDSTGSGLSSNAAKAIDYFTSLKSTNPGIDFAATNNS
                     WGGGGYTQDLQDAITRAAKADILFVAAAGNGGSDQIGDNTDVTANYPSNYSTASTAGY
                     DNVISVAALTSTGALAGFSNYGAKTVDIAAPGVGIYSTTMGGGYGYMSGTSMATPHVT
                     GAIALFAAAHPTYTAAQIRSELLSSGIATASLAGKTVTGARLDVASFVDVAPAGQHAL
                     YGTAGNDTLHGTTASERIFGVAGTGLNPGRGSVDKLYGGGGNDTFVLGDSRGAFYDDG
                     VTGVGRGDYAQVMDWNSGDKIQLAGTAADYFFKLGTYNGLLGTWILEDSNHNHVWDSA
                     DEFIGHIVGMNKVVSDAFTYA"
     gene            complement(4744..6423)
                     /gene="ettA"
                     /locus_tag="VE567_06745"
     CDS             complement(4744..6423)
                     /gene="ettA"
                     /locus_tag="VE567_06745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0045900 - negative regulation of
                     translational elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HYZ48575.1"
                     /translation="MAVQYSFVMKGLTKTFPGHPKPILNNIHLQFLPGTKIAIIGVNG
                     AGKSTLMKIMAGYDTEYQGEAWAAEGVRVGYLPQEPALDPNKTVKENVMDGVRPVADL
                     VDRFNEISNLMADPPEDADFDALMAEMGELQEKIDAVDGWTLDNQLEIAMDALRCPPG
                     DWPVTSLSGGERRRIALCRLLLEKPEILLLDEPTNHLDAESVAWLEKHLIDYAGNVIL
                     VTHDRYFLDNVVGWVLELDRGRGIPFEGNYSAWLEAKSKRMEQEEREEAGRQKAIKEE
                     LDWIRQSPKARQAKSKARIRAFDELVERQEARAPGKAQIVIQTPERLGGKVIEAKSLT
                     KAYGDKLLFEDLSFTLPPGGIVGVIGPNGAGKSTLFKLITGQEKPDAGSIDIGPTVHL
                     GYVDQSRDALDPNKTVWEEVSGGHDIMTLGKHELSTRAYVGAFNFKGPDQQKKVGQLS
                     GGERNRVHMAKMLKAGGNVLLLDEPTNDLDVETLRALEEALENFAGCAVVISHDRFFL
                     DRLATHILAFEGDSHVEWFEGNFEAYEEDKHRRLGDEADRPHRMSYKKLTR"
     gene            6523..7896
                     /locus_tag="VE567_06750"
     CDS             6523..7896
                     /locus_tag="VE567_06750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYZ48576.1"
                     /translation="MRKQRLALFALPLLAAAAPPHDPVKLRDAALKDEVAWDIVEGLS
                     TEIGPRLAGSAAEARARDWAIKKLTAMGFKNVHVETFDIPGWERGEERGEIVGPYSQR
                     LALTALGNSGATPPDGVEAPLIAFASVAELQAAPPEQVRGKIVYVGHAMRATQEGSSY
                     GYFGPVRRAAPNIAAQKGAVAIVIRGLGTDTHRLPHTGVTNFDAGVTPIAAAALANPD
                     ADQIERVLERGKPVRLKLVLTPRRIGTLQSGNVIAEVPGTDPAAGVIAIGGHLDSWDL
                     GTGAIDDASGVAITAAAAKRIMDAGRPRRTIRVIWFGSEEIGGNGGQAYFDRHKAEPH
                     ALVAESDFGADRVWRFQTKLRPASAPLAARLEAVLAPMGITKGAGAASAGADLGPWVR
                     AGANGVDLDQNGLRYFDIHHTADDTLDKIDREQLGQNVAAWTAMLAVAANAPESLVDG
                     GNQTLLK"
     gene            7984..8283
                     /locus_tag="VE567_06755"
     CDS             7984..8283
                     /locus_tag="VE567_06755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48577.1"
                     /translation="MKKLIIVAAAAGLMSLAACNKNTPAENASENTAAALDNQGDNLE
                     AAADNATNQASANALENAADNMHSASNNAEAAADNNVAVNAAEAKNGVVSNTTKK"
     gene            complement(8402..8478)
                     /locus_tag="VE567_06760"
     tRNA            complement(8402..8478)
                     /locus_tag="VE567_06760"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8442..8444),aa:Pro,seq:tgg)
     gene            complement(8618..8692)
                     /locus_tag="VE567_06765"
     tRNA            complement(8618..8692)
                     /locus_tag="VE567_06765"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8658..8660),aa:Ile,seq:cat)
     gene            complement(8672..10393)
                     /locus_tag="VE567_06770"
     CDS             complement(8672..10393)
                     /locus_tag="VE567_06770"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HYZ48578.1"
                     /translation="MRFDDRLATALAQAADSPAARQAVWRQLVDLLGQPDEGESELRA
                     LAFERLRAWRGEVPIIGRQSAALLLLASQPIPADLIEFFAEDATAVSAPLLAGVTLRG
                     ADWRALIPRLSPVARALLRHRRDLPGSAVRTLDAYGQADLVLSGPALAPEPESARYAA
                     PDIGELRARVDAFRDARSHAEPARETEFALETGTDGVIRWCDSAAPAAIIGLSIAEAL
                     PGQAQGVDGQAAGAFRRRAPFRDARLAIAGAGPAGGDWSISGVPVFDPATGRFQGYRG
                     TARRPRIGERAEAAGLFGSPLSADSLRQLAHEVRTPLNAIAGFAEMIERQMLGPASVA
                     YRQRAAAILTETRELETVLDDLHQAALLEAGAVRHQSQEIDCGLLLARLATALNPLAE
                     EKGVALALAIAPSCAPVLLDPSSAERMVSRLLSAAIGLARAGERIGIGLSPGSGDRPE
                     TCVSVGRPKLVADYDEQALFDACDVEGEEEGAPPTLGLGFTLRLVRSLVESCGGRLAV
                     APTVFRLHFPAAGAVDGPDEAPTRVAGGSECDWTMWVSRNGTGTSCQSEDSSAIAPGP
                     GGPVAQR"
     gene            10542..11039
                     /locus_tag="VE567_06775"
     CDS             10542..11039
                     /locus_tag="VE567_06775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HYZ48579.1"
                     /translation="MPSQTLDSVDLEILAALQADGRMTNVELAARVGLTAPPCLRRVR
                     ALEQAGVIKGYHARLEPAALGYGITVFAMVSLKSQAEHELRAFEDHVAKLPQVRECHM
                     LNGEIDFILKIVAPDLQSFQRFLTSELTTAPNVASIKTSLTIRTSKDSPGVPIAGADP
                     LLEGA"
     gene            complement(11040..12317)
                     /locus_tag="VE567_06780"
     CDS             complement(11040..12317)
                     /locus_tag="VE567_06780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48580.1"
                     /translation="MKVSKLALALALAAGMGMAGPSLAKEKKEAAAPAAWAPQLGKDF
                     RNAAASLQKAIQAKDYATAQSLLPAAEAAAKAPDEKFVLGQFRLQIATGTNDAAGQQK
                     AVDEMIASGAGPAEMKGQLLFYQGQFAYKANNFPLAIQALSGAQQAGYAPKDASGQAT
                     RDLDLLLAESYFKSNQVQQGLAVVDRAVQAEKAAGRKAPQEWYGRAASMAYKAKLMPE
                     VAKWTKAQVVDYPSPENWRSALVIFGDANHFDDQTQLDLMRLQRFAGALAGERDYYEY
                     ALLADKVGLPGEAKAVVDEGKAKGAYNASSKAVNEIGTAAGAKVAADRASLIAAEKNA
                     ANAPNGRAALGTGDAFFGYGDYAKAAAMYRLALQKGGVDTNTANLRLGMALAKAGQAA
                     EAKQAFAQVTSGPRAEIAQFWTLWVDQSGRAAG"
     gene            12483..>12647
                     /locus_tag="VE567_06785"
     CDS             12483..>12647
                     /locus_tag="VE567_06785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HYZ48581.1"
                     /translation="METRPNYITPAGFAALRAEYDRLFGDERPKLVETISWAAGNGDR
                     SENGDYIYGRK"
BASE COUNT         2168 a         4261 c         4079 g         2139 t
ORIGIN      
        1 gtcatgctga ctcgctaacc gcgcccgagc agatggtcaa cgaagccgcc cagccgcgcg
       61 aaaccggaga gcttgacgcc ggcgccatcc ttcacgcttg tcggcaccag tgcgcgttcg
      121 aacccaagct ttgcggattc cttgagccgg agcgggccgt gcgcgactgg ccgcacttcg
      181 ccagacagcg caatctcgcc gaacgcgacg gcatcggacg gcagcggccg atcgctgagc
      241 gccgacacga gcgcggcggc gaccgcgagg tccgccgcgg ggtcggagat gcgatagccg
      301 ccggccacgt tcaaatagac ttccgcggtc gagaagctga gaccgcaacg ggcttccaga
      361 accgccagga tcatcgccag ccggcccgaa tcccagccga ccactgcccg gcgaggcgtc
      421 gccccgctcg ccagccgcac cgtcagcgcc tggatttcga ccagcacggg acgcgtacct
      481 tccagggcgg ggaaaacgat cgcgccgctg acattctcgt cgcggtgcgt gaggaacagc
      541 gcggatggat ttgaaacctc gtccaagccc tgatcgccca tcgcgaagac accgatctcg
      601 tcggttccgc caaagcggtt cttgatcgcg cgcagaatgc gatattggtg gctgcgctcg
      661 ccttcgaagc tgagcacggt gtcgaccatg tgctcgagca cgcgggggcc ggcgatcgac
      721 ccgtccttgg tcacatggcc gaccagcacc gcggcggtgc cgcgctcctt ggcaaagcgg
      781 atcagctcgc ccgccgaggc acggacctgg ctgaccgtgc ccggcgcgcc ttcgatcagg
      841 tccgaatgca tggtctggat cgaatcgatc acgaggaggt cgggcgcggt ggtttgcaac
      901 gttgttaaga tatcgcgcac cgaggtggcg gcggcgagca gcactggcgc ctgacccagc
      961 cccaagcgcc gcgcgcggag ccggacctga tcggccgctt cttcgccaga tacataggcg
     1021 acactcttgc cacccgatgc gagcttggcg gttgcctgga gcagcaaggt cgatttgccg
     1081 attcccggat cgccgccgat cagcgtcgcc gatcccgcga cgaacccgcc gcccagcgcg
     1141 cggtcgagct cggcgatgcc ggtgggcagg cgcggcggca gcggcacatc ggcattgagc
     1201 ccgaccaaat cgatcgcgcg gccgcccgac tggagattgt gccgcgcctg aaacggcgtg
     1261 accaccgcgc cggcatcctc caccagcgtg ttccactccc cgcaatcgac gcactgaccc
     1321 gcccatttgg gcgacaccga tccgcagacc tgacagacat atcgtttctg gggcttggcc
     1381 atagccccga gcttaggaac aaaaggcgat cagggctaga gcccgaaggg ccaggtctcg
     1441 tccgtcgagc cgtgttcttc cgctcccggc agcgccgtca ccgcctgcgt gcgatcgaac
     1501 cacacgaacg cgtcgtactg cttcggcagc gtcgcttccg aataatggct ccagcgctcg
     1561 gtatcggggc ggtagatcac gccgatatag cgctccagcc gctgctccat gagcgcttcg
     1621 cgcgcctcat cgtgttcgcc ctcgcgaaga tcgagcagga agcgctcgac accgctgtcg
     1681 tgcatcagcc gctcatagct gtcgggacgc gacgggttga cctgcttgat cttcatcggc
     1741 gcatcccaat catccgcggc ggcgacggtg ccggcatgcg tgccgaagcc gatcagccgg
     1801 gcctcctcgc catgcgcctc gcggacgagc tggcccaggt taagctcttc gcgctgctcg
     1861 cccatgtcgg tgaaccgcgc atcgccgata tgactgttat gcgcccacac cacggccttg
     1921 gcgtcaggtc ccttccaccg caggagcagc gcaagcgtat ccgccatatg ctcgtcgcgc
     1981 aggttccagc tggcggccga gccgtgatac atcgcccggt aataggcctc cgcgttcgcg
     2041 atcaggcggg cgttctgggc agcatcgatg aacgcgtccg gatcgccatc gacatagctt
     2101 tgctgctttg cgaacagctc gcgcagcatc cggacgaccg ccttctcgca gcgtccatag
     2161 ccctcgctga gcgcgatgcg gccataaatc gccggctgct ccttccaggg cttcaggcag
     2221 ccgtaaaggc gccgggcttc cgacgcggct tcggggtccg tacgatcgag atagccgatc
     2281 accgcctcga tggaggcgtt catgttgtag agatcgaggc cgtggaagct gacttgcgcg
     2341 gcggccgagc gattatagtc gcgcagccag cccaggaatg cagcgaactc ggcgttgcgc
     2401 cacatccagg tcgggaagcg tctgaacggc atctccgcct cgggcggcgc cggcttgccg
     2461 cgtaccgccc ggtcgatcgc ggccgcatcg ggccagtccg cctcgactgc gaccatggtg
     2521 aagccatgcc gctcgatcag ccggcgcgta atcgccgccc gcgcgcggta gaattcggac
     2581 gtgccgtggc tcgcttcgcc aagacaaacc acgcgcgcat cgccgaaccg gtcgaagaac
     2641 gacccgaaag ccggttcgtc gatctcgggc agcggctcgg tggctccggc gatcagctcc
     2701 accgtatggc gggtgagagt gtcggtcggc atcgtcctgc tcctctacag gagcagaacg
     2761 aacaccaagg ccgctggttc gtcaggcgta ggtgaaggcg tcggagacga ccttgttcat
     2821 gccgacgatg tggccgatga actcgtcagc cgaatcccac acatgattgt ggttcgaatc
     2881 ctccagaatc caggtgccga gcaggccgtt ataggtcccc agcttgaaga aataatcggc
     2941 ggccgtgccg gccagctgga tcttgtcgcc gctgttccaa tccatgacct gggcataatc
     3001 gccgcggcca acgccggtca caccgtcatc gtagaacgcg ccgcgcgaat cgccgaggac
     3061 gaaggtgtcg ttgccgccgc cgccataaag cttgtcgacg ctgccgcggc ccggattgag
     3121 gccagtcccc gcgacaccga agatgcgctc actcgcagtg gtgccatgga gcgtgtcatt
     3181 gcctgcggtg ccgtaaaggg cgtgctggcc ggcgggggca acatcgacga agctggcgac
     3241 gtcgagccgc gcgccagtga cggtcttccc ggccagcgac gccgtggcaa tgcccgaaga
     3301 cagcagctcg gagcggatct gcgccgccgt gtaggtcgga tgcgccgccg cgaagagcgc
     3361 gatcgcgccg gtgacgtggg gcgtcgccat cgaggtgccg ctcatatagc catagccgcc
     3421 gcccatcgtc gtcgaataga tgcccacgcc aggtgctgcg atgtcgacgg tcttggcgcc
     3481 gtagttggag aagccggcga gagcgcccgt cgaggtgagc gccgcgaccg agatcacatt
     3541 gtcataaccc gcggtcgacg cagtgctgta gttggacgga taattcgcgg tcacgtcggt
     3601 gttgtcgccg atctggtcgc tgccgccatt gcccgccgcg gcgacgaaca ggatgtccgc
     3661 cttggccgcg cgcgtgatcg cgtcctgcag gtcctgggta tagcccccgc cgccccagct
     3721 gttgttggtc gcggcaaagt cgatgccggg attggtgctc ttgaggctgg tgaaatagtc
     3781 gatcgccttg gcagcattgc tggaaaggcc gctgccggtc gaatccatga acttcagcgc
     3841 gacgatctcg gtgttccagc tgacgccggc cacaccgatt ccgtctccac cccgcgccgc
     3901 gatcgtgccg gacacatgcg tgccatggcc ctgatcgtcc atcgggttat tatcgttgtt
     3961 cgcgaagtcc cagccgacca gatcgtcgac atagccgttc ccgtcctcgt ccacgccatt
     4021 cgcccagcgg gcgtccttca gcaggtcgcc cgcatcgata tggccattgc cgttaagatc
     4081 ggagaccagg ccgccgttcg ccggcgcatt gaggtcacgg aaggtgatca gcttgtcgcc
     4141 atcggtgtcg acgagcaggc tccgcatcga ggacggaatc tcgccctggt tgagccagat
     4201 gttcgagtag agatccgggt gggtgtaatc gacgccgctg tcgaccaccc cgatcgcgac
     4261 tttcgtcgag ccggtatagc cagccgccca ggcctccccc gcctggctgc cataggcatt
     4321 cgcaggcgac gtcttgtcgc cgtacatccc ccacatgcga cccgcgagat aatccgtgtc
     4381 gttgctgacc gcctggatgt ggacggtaag cggattgttc ggctgcacgc ccggcacggg
     4441 cgtgttcagc gccgacgaat agcccagatc gtgataaacg ttcgttgccc agagcttagg
     4501 caaagcgata tcgcgcggct cggagccgcg taaaaaagag cgcatgaagt gatccccgct
     4561 agatcgattg ccgcgctcct atagctaaga tgttgattat tcgtagtaaa tcataacgcc
     4621 cgcgaaacaa attcacgatg gcgggttggc tttgcgcggc gagccgcgga acctacagaa
     4681 atgttacgaa aatcggtcgg ggccgccgct ctcagggcgg cccgacgcca ggctcttcga
     4741 cgcttaccgc gtcagtttct tatagctcat ccggtgaggg cggtcggctt cgtcgccgag
     4801 gcggcggtgc ttgtcttcct cataggcttc gaaattgcct tcgaaccatt cgacatggct
     4861 atcgccttcg aaagcaagaa tgtgcgtcgc gaggcgatcc aggaagaagc gatcgtggct
     4921 gatgaccacg gcgcagccgg cgaaattctc gagcgcttct tcgagcgcac gcagcgtctc
     4981 gacgtcgagg tcgttggtcg gctcgtcgag cagcagtacg ttgccgccgg ctttcagcat
     5041 cttggccata tggacgcggt tgcgttcgcc gcccgaaagc tggccgactt tcttctgctg
     5101 gtccggaccc ttgaagttga aggcgcccac ataggcgcga gtcgaaagct cgtgcttgcc
     5161 gagcgtcatg atgtcatgac cgcccgagac ttcttcccac actgtcttgt tggggtcgag
     5221 cgcgtcgcgg ctctggtcga catagccgag atggacggtc gggccgatgt cgatgctgcc
     5281 cgcatcgggc ttttcctggc cggtgatcag cttgaagagc gtggatttgc cggcgccatt
     5341 ggggccgatt acgccgacaa tgccgcccgg cggcagcgtg aagctgagat cttcgaacag
     5401 caatttatcg ccataggcct tggtgaggct cttcgcctcg atgaccttgc cgccgagccg
     5461 ctcgggcgtc tggataacga tctgggcctt gcccggtgcg cgcgcttcct ggcgctccac
     5521 cagttcgtcg aacgcacgga tacgcgcctt ggatttggcc tggcgcgctt tgggcgattg
     5581 ccggatccag tccagctctt ccttgatggc cttctggcgg cccgcttcct cgcgctcttc
     5641 ctgctccatg cgcttggact tcgcttcgag ccaggcggag taattgccct cgaacgggat
     5701 gccgcggcca cggtcgagct cgagcaccca gccgacgaca ttgtcgagga agtagcgatc
     5761 gtgggtgacg aggatgacgt tccccgcata gtcgatcaga tgcttttcga gccacgcgac
     5821 gctctcggcg tccaaatggt tggtcggttc gtcgagcagc aggatttcgg gcttttccag
     5881 cagcagccgg cacagcgcga tgcggcgacg ctcgccgccc gacaggctgg tgaccggcca
     5941 gtcgcccggc gggcagcgca gcgcgtccat cgcgatttca agctggttgt cgagcgtcca
     6001 gccatcgacc gcgtcgatct tttcctgcag ctcgcccatc tcggccatca gcgcgtcgaa
     6061 atcggcgtcc tcgggcgggt ccgccatcag gttggagatt tcgttgaacc ggtccaccag
     6121 gtcggcgacg gggcggaccc cgtccatcac gttttccttg accgtcttgt tgggatcgag
     6181 cgccggctcc tgcggcagat agccgacgcg gacgccttcg gccgcccagg cctccccctg
     6241 atattcggtg tcgtagccgg ccatgatctt catgagcgtc gacttgccgg cgccgttcac
     6301 gccgatgatc gcgatcttcg tgcctggcag gaactgcagg tggatattgt tgaggatcgg
     6361 cttgggatgg cctgggaagg tcttggtcag gcccttcatg acgaaactat actgcacggc
     6421 catcggccct ggtctccgaa ctcgaaatgt tggatttggc gcgggcccta gccgagccgc
     6481 caaggcttgg caaacacgct ggaacataag tagggcaggc gcatgagaaa acaacggctc
     6541 gcgctcttcg ccctccccct cctcgccgcg gccgcaccgc cgcacgatcc ggtcaagctg
     6601 cgcgacgcgg cgctgaagga cgaagtcgcc tgggacattg tcgaaggact ttcgaccgag
     6661 atcggtccgc ggctggccgg cagcgccgcc gaggcccggg cgcgggactg ggcgatcaaa
     6721 aagctgaccg cgatgggctt caagaatgtc catgtcgaaa ccttcgacat ccccggctgg
     6781 gaacgcggcg aggaacgcgg cgagatcgtg gggccatatt cccaacggct cgccctcacc
     6841 gcgctcggca atagcggggc aaccccgccc gatggcgtag aggcgccgct gatcgccttc
     6901 gccagcgtcg ccgaactcca ggccgcaccg cccgagcaag tgcggggcaa gatcgtctat
     6961 gtcggccacg caatgcgcgc gacgcaggag ggatcgagct acggctattt cggccccgtg
     7021 cggcgggcag cgcccaatat cgcggcgcaa aaaggcgcgg tcgcaatcgt gatccgcggg
     7081 cttggcaccg acactcaccg gctgccgcac accggcgtca ccaatttcga tgcgggcgtg
     7141 acgccgatcg ccgcggcggc gctcgccaat cccgacgccg accagatcga gcgcgtgctg
     7201 gagcggggga agccggtgcg gctgaagctc gtgctcacgc cgcgccggat cgggacgctc
     7261 caatcgggca atgtgatcgc cgaggtgccc ggcaccgacc ccgccgcggg cgtgatcgcg
     7321 atcggcggcc atctcgacag ctgggacctg gggaccggcg cgatcgacga cgcctcaggc
     7381 gtcgcgatca cggccgcagc ggcaaagcgc atcatggatg ccggccgccc gcgccgcacg
     7441 atccgggtca tctggttcgg cagcgaagaa atcggcggca atggcggcca ggcctatttc
     7501 gaccggcaca aggccgagcc ccacgctctg gtcgccgagt ccgatttcgg cgcggaccgg
     7561 gtgtggcgct tccagaccaa gctgcggccc gcttccgcgc cgctcgccgc ccggctcgaa
     7621 gcggtgctgg cgccgatggg catcaccaag ggcgcaggag cggccagcgc gggcgccgat
     7681 ctcggcccct gggtgcgggc cggggccaat ggcgtcgatc tcgaccagaa cggcctgcgc
     7741 tatttcgaca tccatcacac ggccgacgat acgctcgaca agatcgaccg ggaacagctc
     7801 gggcagaacg tcgccgcatg gaccgcgatg ctcgccgtgg cggcaaacgc acccgaatca
     7861 ttggtggacg gaggcaacca aactctactg aaatagtttg acgaacttgt tgttgcggct
     7921 aaataccgcc gacgcggacg gcatcgggcc gggcgcgact attatccctt ggggagcaca
     7981 ggaatgaaga agctgatcat cgttgctgct gccgccggcc tgatgtcgct ggccgcctgc
     8041 aacaagaaca cgccggccga gaacgcctcg gagaacaccg cggcggcgct cgacaatcag
     8101 ggcgacaatc tcgaagctgc tgccgacaac gccaccaacc aggcgtcggc gaacgcgctc
     8161 gagaacgcgg cggacaacat gcacagcgcg tccaacaacg ccgaggccgc ggccgacaac
     8221 aatgtcgccg tcaacgccgc cgaagcgaag aacggcgtgg tctcgaacac caccaagaag
     8281 taagctcgct ccggctatcg gccggacaag caataagggc ggttccctaa gggagccgcc
     8341 cttttctatg cctgcgtcgt ccggtcgcgg cccgatcggc gtctatcgcg gcgcggcaaa
     8401 atggtcgggg agacaggatt cgaacctgcg accctctgct cccaaagcag atgcgctacc
     8461 aggctgcgct actccccgac cggggcctca tgccttttgc tcggcttaca cgcaagcggc
     8521 gcggcaacgc cgcgccgtcg gtcctcgctt tgggcgaggc cagccgagcg cgcctagagg
     8581 ccggccgcag ctctcgctgc ggtcttgccc ggcgcgctgg tgggcccgga gggattcgaa
     8641 cccccaacca agccgttatg agcggccagc tctaccgttg agctacaggc ccgccgggcc
     8701 cgggggcgat agcggagctg tcttcactct ggcaagacgt gccggtgccg ttgcggctga
     8761 cccacatcgt ccaatcgcat tcgctgccgc cggcaacccg ggtcggggct tcgtcagggc
     8821 catccaccgc gccggctgcg ggaaagtgga gacgaaagac ggtcggcgcc accgccagcc
     8881 gcccgccgca cgattcgaca aggctgcgca cgagccgcag cgtgaagccg aggccgagcg
     8941 tgggcggcgc gccttcttct tccccttcga catcacaggc atcgaacagc gcctgctcgt
     9001 cataatcagc gacgagcttg ggacggccga ccgaaacgca cgtctcgggt ctgtccccgc
     9061 tgcctggtga caggccgatg ccgatgcgtt cgcccgcgcg cgcgagccca atcgccgcgc
     9121 tcagcaagcg cgataccatc cgctcggccg aggacgggtc gagcagcacc ggcgcacagg
     9181 acggcgcgat cgcgagagcg agggcaacgc ctttttcttc ggccaacggg ttgagcgccg
     9241 tcgcgaggcg cgcgagcagc agcccgcaat caatctcctg cgactggtga cgcaccgcgc
     9301 ctgcttcgag cagcgcagcc tgatgcagat cgtcgagcac cgtctcgagc tctcgcgtct
     9361 cggtcaaaat cgcggcggcg cgctgccgat aggcgaccga tgccggcccc agcatctggc
     9421 gctcgatcat ctcggcaaag ccggcgatgg cgttcagcgg cgtgcgcact tcatgcgcaa
     9481 gctggcgcag cgaatccgcc gaaagcggcg agccgaacag gccggccgcc tcggcccgtt
     9541 cgccgatccg cggccgccgc gccgtgccgc gatatccctg gaaccgcccc gtcgccgggt
     9601 cgaagacagg cacgccagaa atcgaccagt cgcctcctgc cggcccagcc cccgcgatcg
     9661 ccagccgggc atcgcggaac ggcgcgcggc ggcggaacgc accggctgcc tggccgtcca
     9721 ccccttgggc ctgcccgggc agggcctccg cgatcgaaag gccgatgatc gcggccggtg
     9781 cagccgaatc gcaccagcgg atcacgccgt cggttccggt ttcgagcgcg aactcggttt
     9841 cccgcgccgg ctccgcatgg ctgcgagcgt cgcgaaacgc atcgacgcgc gcacggagct
     9901 ccccgatgtc gggcgccgca tagcgcgccg actcgggctc gggcgcgagc gctggtccgg
     9961 aaaggaccag atcggcctgg ccataggcgt ctagcgttcg cacggcgctg cccggcagat
    10021 cgcggcggtg gcgcagcagc gcgcgggcca ccggcgacaa tcggggaatg agtgcgcgcc
    10081 aatcggcccc gcgcaacgtg acgcctgcga gcaaaggggc actgaccgcc gtcgcgtcct
    10141 cggcgaaaaa ctcgatcaga tcggcgggga tgggctggct ggcgagcagc agcagcgccg
    10201 cgctctgccg cccgataatg gggacttcac cgcgccaggc ccgcagccgc tcgaatgcga
    10261 gcgcccgcag ctccgactcg ccttcgtcgg gttggcccag cagatcgacg agctggcgcc
    10321 acacggcctg ccgcgcggcg ggactatccg ccgcctgcgc aagcgcagtc gccaatctat
    10381 cgtcgaatcg caccctgttc ctcctgcccg caagtatttg gaatagcgcg ccatgggagc
    10441 gctcgacaga ccgaatattg ctgcgtcaca aagtgagaca attgcgaggc gccgcaatta
    10501 tcttataaaa ccggcaggac tattccgcgg ggtattgcgc aatgccgtct cagacgctcg
    10561 attcggtcga tttggagatt cttgctgcac tgcaggcaga cggcagaatg acaaatgtgg
    10621 aattggcggc ccgggtcggc ctgaccgcac cgccctgtct gcgccgcgtc cgcgcgcttg
    10681 aacaggcggg ggtgatcaag ggctatcatg caaggctgga gccggctgcc ctgggctacg
    10741 gcatcaccgt ctttgcgatg gtcagcctga aaagccaggc cgagcatgag ctgcgcgcgt
    10801 tcgaggacca tgtcgccaag ctcccgcaag tgcgcgaatg ccatatgctg aacggcgaga
    10861 tcgacttcat cctgaagatc gtcgcgccgg accttcagtc gttccagcgc ttcctgactt
    10921 cggagctgac gaccgcgccc aatgtggcga gcatcaagac ctcgctcacg atccgcactt
    10981 caaaggacag ccccggcgtt ccgatcgccg gggccgaccc tttgctcgag ggcgcgtaat
    11041 cagccggccg cgcggccgct ctgatcgacc cagagcgtcc agaattgcgc gatctccgcg
    11101 cgcgggccgg acgtgacctg cgcgaaagcc tgcttcgcct ccgcggcctg gccggccttg
    11161 gcaagcgcca tgccgaggcg cagattggcg gtgttggtgt cgacgccgcc cttctgcagc
    11221 gcaaggcggt acatcgcggc cgccttggca tagtcgccat agccgaagaa cgcatcgccg
    11281 gtgccgagcg cggcgcgacc gttcggggcg ttggcagcgt tcttctcggc ggcgatcagc
    11341 gaggcgcggt cggcggcgac cttggcgcca gccgccgtgc cgatctcgtt cactgccttg
    11401 ctgctggcgt tgtaggcgcc tttggccttg ccttcgtcga cgactgcctt ggcttcgccc
    11461 ggcaagccca ctttgtcggc aagcaaggca tattcataat aatcccgctc gccggcgagc
    11521 gcgcccgcaa agcgctggag ccgcatcaga tcgagctggg tctggtcgtc gaaatgattg
    11581 gcatcaccga agatgacgag agcgctgcgc caattctcgg gcgacggata atcgaccacc
    11641 tgcgccttgg tccatttcgc gacttcgggc atcagcttgg ccttgtaagc catcgaggcg
    11701 gcgcgaccgt accattcctg cggcgccttc cggcccgcag ccttctcggc ctggaccgcg
    11761 cggtcaacga ccgccagccc ctgctggacc tggttgctct tgaagtagga ttcggcgagc
    11821 agcaggtcca ggtcgcgggt cgcctgaccg ctcgcgtcct tgggcgcata gcccgcctgt
    11881 tgcgcgccgc tcagcgcctg aatggcgagc gggaaattgt tggccttgta cgcgaactgg
    11941 ccctggtaga agaggagctg ccccttcatc tcggccgggc ccgcgcccga agcgatcatc
    12001 tcgtcgaccg ccttttgctg gcccgccgcg tcgttcgtgc ctgtcgcgat ctgcagccgg
    12061 aactggccga gcacgaactt ctcgtcgggg gcctttgccg cagcttcggc ggcgggcaac
    12121 agcgactggg ccgtcgcata atccttggcc tggatggcct tctgaagcga cgcggcggcg
    12181 ttgcggaaat ccttgccgag ctgcggcgcc caggcggccg gcgcggcggc ttccttcttt
    12241 tccttcgcga gcgaggggcc ggccatcccc atgccggcgg cgagcgccaa cgcgagcgcc
    12301 agtttcgaaa ccttcatgtc tacatctctc ctctcgagga acctgacttg ggcgatgatc
    12361 gctgcgcgat tccctaaacc ccgtcccagc cccaaacaag cgccggctgt gacgattcgc
    12421 cactgaacaa aggttgaacc cgtctctcga cttaagcccc tgccccaccc taatcagtcg
    12481 ttgtggagac cagacccaat tacatcaccc cggccggctt tgccgcgctg cgcgccgaat
    12541 atgaccggct gttcggcgac gagcggccca agcttgtcga gacgatcagc tgggccgcgg
    12601 gcaatggcga ccggtccgaa aatggcgact atatctatgg ccgcaaa
//
LOCUS       DASQVK010000319         5219 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_336551,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000319 DASQVK010000000
VERSION     DASQVK010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5219
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336551"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1795)
                     /locus_tag="VE567_06790"
     CDS             complement(<1..1795)
                     /locus_tag="VE567_06790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010337940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HYZ48582.1"
                     /translation="MRLSSKLKSGAAFAAVAIAVLAGPASAQVVQTAPTAADETGTIV
                     VTGSRIRVDPLNQTSPVVTLDQSALGQTGLSSVADILQRLPSASGGLNSKVNNSGNLG
                     NPPDGGGVGAGSAEIDLRYLSAKRTLVLVDGMRFVNGTSASGIPATVDINTIPANMIE
                     RIEVLQAGASPLYGSDAIAGVVNIITVAQQEGLRASAQFGTFRQGDGHTWDINASYGF
                     KGETTNLVFGAAYVKQEPVRSSARRISLFPNPGQTSCTDQIGGCSSAAVNGRFLTDFG
                     NQTISNPPNSHPTMADLRPFTAADRFNFAPFNYILTPNERYGVWMSFQQQLGDDINLR
                     VKAQYNHRKSQNQAAFEPLFIGPDAGNGAGSLFDRLSIDATNPYNPFGVTLSAGLPGQ
                     PAQNYSFIARRLVEAGQRTFNQRVDTFSATATLDGSFMLADHKWYWDANASFGVNDAH
                     QSFTGNVRADRVAQAIGPISQCTAPCVPLNLFGGAGSITPDQLAFIAFTEHDRSNQTL
                     YDYTLNLTGEIFDLPAGPVGVAVGYEHRIQSASFTPDPIVSAGLGADIPAQPAHGRYH
                     VDEVYGEVRVPILKDTPFFYSLEANGAIRHSS"
     gene            complement(1940..2185)
                     /locus_tag="VE567_06795"
     CDS             complement(1940..2185)
                     /locus_tag="VE567_06795"
                     /inference="COORDINATES: protein motif:HMM:NF022890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3008 family protein"
                     /protein_id="HYZ48583.1"
                     /translation="MQEEQWRRRSRWCRCSKENGTMPAKSKKQQMAAGAALAVKEGKK
                     PKSSLKGASRQMAQSMSKPELEKLAHTKRSKLPDKAG"
     gene            2257..3453
                     /locus_tag="VE567_06800"
     CDS             2257..3453
                     /locus_tag="VE567_06800"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HYZ48584.1"
                     /translation="MREAAIVSTARTGIGKAYRGYFNATEAPVLAAHVMNAAVERAGI
                     DPARIDDVFWGVGNQWGTQGGNAGRMAVFAAGIPQSVPAFTLDRKCGSGLTAAALAAR
                     SIIAGDIDVALSGGMESISSTVTKDAPRYVNRSVTARQPAAYIPMIETAEIVAERYGV
                     SRARQDEYGALSQQRAAKGLASGAFAEEIAPITVEKAIFDKEGNRTGSETVTVTQDEG
                     IRAGTTVDVLAGLKTVWPGGEFTGPGTNVTAGNASQLSDGASAQILMERSLAEAEGRD
                     ILGIYRGFQAAGCAPDEMGIGPIFAIPKLLDRAGLSVGDIGLWELNEAFASQCLYCRD
                     HLGIDPDKYNVNGGAIAIGHPFGMTGSRLLGHALIEGRKRGVRWVVVSMCTAGGMGAA
                     GLFEIV"
     gene            3659..3931
                     /locus_tag="VE567_06805"
     CDS             3659..3931
                     /locus_tag="VE567_06805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48585.1"
                     /translation="MSSLDEMRPAPETSTGRASAGNAAWGAKETPVNEIVKTAQEVKD
                     GEERASPAENRAAWIAAGVGVGIGSAALVAALLYANRDKPKGSKRS"
     gene            4080..>5219
                     /gene="alaS"
                     /locus_tag="VE567_06810"
     CDS             4080..>5219
                     /gene="alaS"
                     /locus_tag="VE567_06810"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HYZ48586.1"
                     /translation="MSSTNDIRRTFLDYFEGERHARVASAPLVPHNDPTLMFVNAGMV
                     PFKNVFTGLETRPYSTATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYF
                     KERAISLAWNLITREFGIDRNRLLVTVYHTDDQAFDLWKKIAGLPDDRIIRIATKDNF
                     WAMGDNGPCGPCSEIFYDHGEHIPGGPPGSPDEDGDRFTEIWNLVFMQYEQEANEIVR
                     DLPKPSIDTGMGLERIAAVLQGVHDNYDTDTFRALIGESAALTSTPADGAHKASHRVI
                     ADHLRASGFLVADGVLPANEGRGYVLRRIMRRAMRHAHLLGSKEPLMHRLVPSLVAEM
                     GAAFPELVRAQPLIEATLKQEETKFRQTLVNGLRLLDEATAAMKPG"
BASE COUNT          913 a         1648 c         1764 g          894 t
ORIGIN      
        1 agctcgaatg gcgaatggca ccattcgctt ccagcgagta gaagaagggc gtgtccttca
       61 ggatggggac gcggacttcg ccatagactt cgtccacatg gtagcggcca tgggcgggct
      121 gggcagggat gtcggcgccc aatccggccg aaacgatcgg gtcaggcgtg aagctcgcgc
      181 tctggatccg gtgctcatag ccgaccgcga ccccgaccgg gccggccggc aagtcgaata
      241 tttcgccggt aaggttcaga gtatagtcgt agagcgtctg gttgctgcgg tcatgctcgg
      301 taaaggcgat gaacgcgagc tggtcgggcg tgatcgatcc agcgcccccg aacaggttca
      361 gcggcacgca aggcgccgtg cattgcgaga tcggtccgat cgcctgggcg acacggtctg
      421 cgcgcacatt gccggtaaag ctttgatgcg cgtcgttcac gccgaacgaa gcattcgcgt
      481 cccaatacca tttgtggtcg gccagcatga acgagccgtc cagcgtggct gtcgccgaga
      541 aggtgtcgac ccgctgattg aatgtgcgct ggcccgcctc gaccaggcgc cgcgcgatga
      601 acgagtaatt ctgagccggc tgccccggca atcctgccga caaggtgacg ccgaacggat
      661 tataggggtt cgtcgcgtcg atcgacagcc ggtcgaacag gctgccggcg ccattgccgg
      721 cgtcggggcc gatgaacagc ggctcgaagg ccgcctgatt ctgcgacttg cgatggttgt
      781 actgagcctt caccctcagg ttgatgtcgt cgcccagctg ctgctggaag ctcatccaca
      841 cgccataacg ctcattcggt gtcaggatgt agttgaaggg tgcgaagttg aatcggtccg
      901 ccgcggtaaa cggccgcagg tcggccatgg tcgggtggga attcggcggg ttggagatcg
      961 tctggttgcc aaagtcggtc aggaatcggc cgttgaccgc cgcgctcgag cagccgccga
     1021 tctgatcggt gcaactcgtc tggccaggat tggggaatag ggaaatgcgg cgggcgctgg
     1081 agcgcaccgg ttcctgcttc acataggccg cgccgaacac caggttagtg gtctcgccct
     1141 tgaagccgta gctggcgttg atgtcccagg tatggccatc gccctggcgg aaggtgccga
     1201 attgggcgga ggcccgcagc ccttcctgtt gcgccacggt gatgatgttg acgacgcccg
     1261 cgatcgcgtc cgacccgtaa agcggcgacg cgcccgcctg cagcacctcg atgcgttcga
     1321 tcatgttcgc cgggatcgtg ttgatgtcga cggtcgcggg aatgccgctg gcgctcgtgc
     1381 cgttcacgaa ccgcatcccg tcgaccagca ccaatgtgcg cttggcgctc aggtagcgga
     1441 ggtcgatttc cgcggagccg gcgcccacac cgccgccatc gggcggattg ccgagattgc
     1501 cgctgttgtt gaccttgctg ttgagcccgc ccgacgcgct cgggaggcgc tggaggatat
     1561 cggcgactga ggagaggccg gtctgaccga gcgcggattg gtcgagcgtg accaccggcg
     1621 acgtctgatt gagcggatcg acgcgaatgc gggaaccggt gaccacgatc gttccggttt
     1681 catcggccgc agttggcgca gtctgcacca cttgcgccga ggccggaccg gccagaacag
     1741 cgatggcaac ggcggcaaat gccgctccgc tcttaagctt cgacgacagc cgcataagaa
     1801 tgcccctgta tagtggaggg ccaaacctag ctctgcggcc gtgcgggcga aacggcgtgc
     1861 cgacaaggcg agtgcgattt gcgcactacc gttgcgaaaa tgttacaatc gcgcgacagt
     1921 cgtcccggcg ccgcgccgct caacctgcct tgtcgggcag cttgctgcgc ttggtgtggg
     1981 cgagcttttc cagttccggc ttggacatcg actgtgccat ttgcctggag gcgcctttga
     2041 gactcgactt cggctttttg ccttccttga ccgcgagcgc agcgcccgcc gccatttgct
     2101 gctttttcga tttcgccggc atggttccgt tctccttgct gcagcggcac caacgagagc
     2161 ggcggcgcca ctgttcctcc tgcacagggc tcttgccgaa cgggtgctcc tatggtcgag
     2221 gaacgaagcg ctagcgcaac aggagattcc ctacagatga gagaagccgc catcgtatcg
     2281 accgcccgaa cgggcatcgg caaagcctat cgcggctatt tcaatgcgac cgaggcgccg
     2341 gtgctcgccg cgcacgtcat gaacgccgcg gtagagcgcg ccggcatcga tcccgcacgg
     2401 atcgacgatg tgttctgggg cgtgggcaat cagtggggca cgcagggcgg caatgccggg
     2461 cggatggccg tattcgccgc cgggattccg caatcggtgc ccgccttcac gctggaccgc
     2521 aaatgcgggt cgggcctcac cgccgctgcg ttggccgccc gttcgatcat cgccggggac
     2581 atcgacgtcg cgctctccgg cggcatggaa tcgatcagca gcaccgtaac caaggatgcg
     2641 ccgcgctacg tcaacaggag cgtcaccgcc cgccagcctg cggcctatat cccgatgatc
     2701 gagacggccg aaatcgttgc ggagcgctac ggcgtcagcc gggcgcgcca ggacgaatat
     2761 ggcgcgctca gccagcagcg ggccgctaag ggcctggcat ccggcgcctt tgccgaggaa
     2821 atcgcgccga tcacggtcga aaaggcgatc ttcgacaagg aaggcaatcg gaccggctcc
     2881 gaaaccgtga cggttacgca ggacgaaggc attcgtgccg gcacgacagt ggacgtgctg
     2941 gcaggcctga agaccgtctg gcccggcggc gagttcaccg ggccgggcac gaacgttacg
     3001 gccggcaatg ccagccagct ctccgacggc gcatcggcgc agatcctgat ggaacgcagc
     3061 ctcgccgaag cagagggcag ggacatactg ggcatttatc ggggtttcca ggccgccggc
     3121 tgcgcgcccg acgaaatggg gatcgggccg atcttcgcga tccccaaatt gctcgaccgc
     3181 gcgggacttt cggtcggcga tatcgggctg tgggagctga acgaggcgtt cgcttcgcag
     3241 tgcctctact gccgcgacca tctcggcatc gaccctgata agtacaacgt caatggcggc
     3301 gcgatcgcga tcgggcaccc gttcggcatg acgggcagcc gcttgctggg ccacgcgctg
     3361 atcgaaggac gcaagcgcgg cgtgcgctgg gtggtggtct cgatgtgcac tgccggcggc
     3421 atgggcgcgg cgggcctgtt cgagatcgtc tgaccggctg gccggagcgc gcatcctttg
     3481 gggcggccgc gcacgggcgt ggcggccggg tcgcgctccg caacccagcg gtcgagcgcg
     3541 tccgaaggga tggcttcaac aaaggcgagg ccgaactcgc cgccgcccat cgggtcggcg
     3601 ccttcgcggg gaaacgtccg cgcggctgat cgttggagcc atgtgcagga gttgtgtcgt
     3661 gtccagtctt gacgaaatgc gtcccgcccc ggaaacgtcg accggaaggg cgtcggccgg
     3721 caacgcggcc tggggcgcca aggagacgcc ggtgaacgag atcgtgaaga cagcgcagga
     3781 agtgaaggac ggcgaggaaa gagcgtctcc cgccgaaaat cgcgcggcct ggatcgctgc
     3841 cggcgtcggt gtcggcatcg gctccgcggc gctcgtcgcg gcgctgctct atgccaatcg
     3901 ggacaagccc aaaggcagca aaaggagctg aggcgacagt tcgcgcaccg gcgcggagcc
     3961 ggcgccgctg ccaacagcgg cttgccgcct gacttcgccc gcgttcggcc tgtccgcgcc
     4021 caagcgggac cgcagcgcca gttgctcccg ttcccgctct accctacatc gcgctggcca
     4081 tgagctcgac caacgacatc cgccggacct ttctcgatta tttcgaaggc gaaaggcatg
     4141 cgcgcgtcgc gtccgcgcct ctggtgccgc acaacgaccc gacgctgatg ttcgtgaacg
     4201 ccggcatggt gccgttcaag aacgtgttca cggggctaga gacgcgcccg tattcgacgg
     4261 ccacgtcctc gcagaagtgc gtgcgcgccg gcggcaagca caacgatctc gacaatgtcg
     4321 gctataccgc gcggcaccac actttctttg aaatgctggg gaatttctcc tttggcgatt
     4381 atttcaagga acgcgcgatc tcgctcgcct ggaacctgat cacgcgcgag ttcgggatcg
     4441 accggaaccg gctgctcgtc actgtctatc acaccgatga ccaggccttc gatctgtgga
     4501 agaagatcgc gggcctgccg gacgaccgga tcatccgcat cgcgaccaag gacaatttct
     4561 gggccatggg cgataacggc ccctgcggtc cctgctcgga gattttctac gatcatggcg
     4621 agcatattcc gggcggcccg cccggcagcc cggacgagga cggcgaccgc ttcaccgaga
     4681 tctggaatct cgtcttcatg caatatgagc aggaagcgaa cgagatcgtg cgcgacctgc
     4741 ccaagccctc gatcgacacc ggcatggggc tggagcgcat tgccgccgtg ctccagggcg
     4801 tgcacgacaa ttacgacacc gacacgttcc gcgcgctgat cggcgagagc gcggcgctga
     4861 cctcgacgcc ggccgacggc gcgcacaagg cctcgcaccg ggtgatcgcc gaccatctgc
     4921 gcgcgtcggg attcctggtt gcggacggcg tgctgccggc gaacgaaggc cgcggttatg
     4981 tgctgcgccg gatcatgcgc cgggcgatgc ggcacgccca tctgctgggc tcgaaagagc
     5041 cgctgatgca ccggctggtg ccctcgctgg tggccgagat gggcgctgcg tttcccgagc
     5101 tcgtccgcgc gcagccgctg atcgaagcga cgctcaagca ggaagagacg aagttccgcc
     5161 agacgctcgt caacggcctg aggctgctgg acgaggcgac cgcggcgatg aagccgggc
//
LOCUS       DASQVK010000320         6339 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_304728,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000320 DASQVK010000000
VERSION     DASQVK010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6339
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304728"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..187)
                     /locus_tag="VE567_06815"
     CDS             complement(<1..187)
                     /locus_tag="VE567_06815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYZ48587.1"
                     /translation="MSTTYLPTLKQLQYLVALHDHGHFGRAADACFVTQSTLSAGLRE
                     LESLIGVTLAERTRRVVR"
     gene            305..847
                     /locus_tag="VE567_06820"
     CDS             305..847
                     /locus_tag="VE567_06820"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014849222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HYZ48588.1"
                     /translation="MLTVGDKLPELTLPVQQGTSDLPAGETIKLGEKNGKWKILFYWP
                     KDFTFVCPTEIVGYGQLKSEFADRDAELIGASTDTAHVHFAWRRSDPELAQADFPWIA
                     DNGAQLASALGILDANEHVAYRATFIVDPDNVIQHVTVNGLNVGRNPQETLRVLDALQ
                     TDELCPCNWTKGEQVLRPAA"
     gene            985..1506
                     /locus_tag="VE567_06825"
     CDS             985..1506
                     /locus_tag="VE567_06825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010164468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HYZ48589.1"
                     /translation="MSLKEFADTLPDFAKDLRLNVSSILNDQLLGDQRKYGLLLATAH
                     GTGYRPLVAATEAEVDGKLSPDAANAARAAAAVMAMNNVYYRFTHLASNPEYQTMPAK
                     LRMNVIGNPGIDKADFELFSLAVSAQNGCGMCIDSHEKVLRQHSVNAETIQAAARIGA
                     VMTAVATVHSAIN"
     gene            complement(1513..3021)
                     /locus_tag="VE567_06830"
     CDS             complement(1513..3021)
                     /locus_tag="VE567_06830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019052926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HYZ48590.1"
                     /translation="MVAIVSTCAYLGLEARAVEVQVQIAPGMPGFVVVGLPDKAVAES
                     RERVRAAIASLGLSLPPKRITVNLSPADLPKEGSHYDLPIALGLLAAMGVIDIESLGQ
                     YVAVGELGLDGRIAPCPGALLAALHASERGLGLICPDAQGGEAAWAGSIEVLAAPDLL
                     ALLNHLRGSALLPAPAPGDADAPNHGPDLAQVKGQETAKRALEIAAAGGHNLLMVGPP
                     GAGKSLMAACLPRILPELTPAEALEVSMVASVAGALEGGRISRTRPFRAPHHSASMAA
                     LVGGGIRARPGEVSLAHLGVLFLDELPEFQRGVLDSLRQPLETGNVSVARANAHVTFP
                     ARVQLVAAMNPCRCGHLGDPALACARAPRCAADYQAKVSGPLLDRIDLHVEVAAVSAA
                     DLVLPPPSEGSAQVADRVRAAREAQTRRYNGHRVRTNAEADGTVLEAVATPDEPGRKL
                     LAQAAEAMRLSARGYTRIQRVARTIADLACAETVGRIHVAEALSYRRQPPRS"
     gene            3139..3393
                     /locus_tag="VE567_06835"
     CDS             3139..3393
                     /locus_tag="VE567_06835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010407693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48591.1"
                     /translation="MLRLVYLGLGWLLLILAPIVGALPGPGGIFIFAAGAALLLKNSN
                     WVKRAYVRFSRRYPKYGRLADRGLRRPPAPRGRAKPERAD"
     gene            3483..3617
                     /gene="rpmH"
                     /locus_tag="VE567_06840"
     CDS             3483..3617
                     /gene="rpmH"
                     /locus_tag="VE567_06840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005980833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HYZ48592.1"
                     /translation="MKRTFQPSNLVRKRRHGFRARMSTVGGRKVLAARRARGRKTLSA
                     "
     gene            3629..3940
                     /gene="rnpA"
                     /locus_tag="VE567_06845"
                     /pseudo
     CDS             3629..3940
                     /gene="rnpA"
                     /locus_tag="VE567_06845"
                     /inference="COORDINATES: protein motif:HMM:NF013022.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004526 - ribonuclease P activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
     gene            3958..4158
                     /gene="yidD"
                     /locus_tag="VE567_06850"
     CDS             3958..4158
                     /gene="yidD"
                     /locus_tag="VE567_06850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HYZ48593.1"
                     /translation="MLIGLARFWQRYPSAILQPSCRYTPSCSAYAIEALERYGAARGG
                     WLALKRVCRCHPLGGHGYDPVP"
     gene            4171..5886
                     /gene="yidC"
                     /locus_tag="VE567_06855"
     CDS             4171..5886
                     /gene="yidC"
                     /locus_tag="VE567_06855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0032977 - membrane insertase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HYZ48594.1"
                     /translation="MDNQRNMILAIVLSALVLLGWSLLSDRLLPTANPPATKVVQGKQ
                     VPVPPPATVAPKAVQDRATVLRESMGQRVRIDTPSVAGSINLKGARVDDLVLKRHRET
                     IAKNAPPVRLLSPEGGPQPIYAQFGWAGQGVQLPGNDTVWQADGTLLAPGHPVTLSWS
                     NGSGQTFRIRLSIDQNYMIAAEQSVANGGSAPVAVRPFALVKHTGLSPDPDTWTVHTG
                     PMGVFDGVANYSIKSKDLDGAGPEGKSFTSTGGWLGFTDKYWLTAIIPPQGAHVNASF
                     RSIGDKVYLAAFTPTDQAVLAPGKAATSTSHLFSGAKEVGVLQAYERDLKITQFDKAI
                     DWGWFAFFERPIFWLLDYLFKAVGNFGFAIILLTLIVRGAMFPIAQRQFASMAAMRAL
                     QPKVKALQERHKEDKQKLQQEMLELYKREKVNPLAGCLPIVIQIPIFYALYKVLILTI
                     EMRHQPFILWIKDLSAPDPATVVNLFGYLPFTPPHFLALGVLPILLGITMYIQFKLNP
                     AQMDPAQQQVFSIMPWVFMFIMSGFAAGLQLYWTVSNLLAIAQQKFLYSRYPALKNAP
                     GTATT"
     gene            5886..>6339
                     /gene="yihA"
                     /locus_tag="VE567_06860"
     CDS             5886..>6339
                     /gene="yihA"
                     /locus_tag="VE567_06860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019514912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTP-binding protein
                     YihA/YsxC"
                     /protein_id="HYZ48595.1"
                     /translation="MDGELIEQARKLFAGPIAFLKSAPDLKFLPDPEAPEVAFAGRSN
                     VGKSSLLNALTGRNGLARTSNTPGRTQELNFFDVGEPLVLRLVDMPGYGFAKAPKDLA
                     RKWRYLVNDFLRGRAVLKRVLVLVDSRHGLKDVDRELMDMLDQAAVSYR"
BASE COUNT         1068 a         2129 c         2083 g         1059 t
ORIGIN      
        1 aacgaacgac gcggcgagtt cgttcggcca gggtgacccc gatcagcgat tcgagttcgc
       61 gcaagcccgc cgaaagcgtc gactgagtga caaagcaggc atcggccgcg cggccgaaat
      121 ggccgtgatc atgcagcgcc acaaggtact gaagctgctt gagcgtgggc aggtaggtgg
      181 tgctcatttc attgcgccaa tcgattaatc ggagtggaat aatctattag ctcactgaaa
      241 gccagcattc tatatcggcc cccgactcgc acttcgttgc gctgcacaac aaggagatga
      301 aagcatgctg accgttggcg acaaacttcc cgaactcacc ctgccggtcc agcagggcac
      361 gtccgacctg cccgcggggg agacgatcaa gctcggcgag aagaacggga agtggaaaat
      421 cctgttctac tggccgaagg acttcacgtt cgtttgcccg acagagatcg tcggctatgg
      481 ccaactcaag agcgaattcg cggatcgcga tgccgaactg atcggcgcgt cgaccgacac
      541 cgcgcacgtc cacttcgcct ggcgccgttc ggacccggag ctggcccagg cggatttccc
      601 gtggatcgcc gacaacggcg cacagctcgc ttcggcgctg ggcattctgg atgcgaacga
      661 gcatgtcgcc taccgcgcga cgttcatcgt cgatccggac aatgtgatcc agcatgtgac
      721 ggtgaacggc ctcaatgtcg gccgcaaccc gcaggagacg ctgcgcgtgc tcgacgcgct
      781 gcagaccgat gagctctgcc cctgcaactg gaccaagggc gagcaagttc tccgccccgc
      841 tgcttaagcc tgctcccggg cgcgggcgaa aagctccgcg cccaccccgt cgtccccgcg
      901 aacgctggga ccagcttctt cccccttcaa gacagctggc ccccgctttc gcggggcgat
      961 ctttgacgtg cattggagac ccccatgtcc ctcaaggaat tcgcggacac gctccccgat
     1021 ttcgccaagg atttgcggct gaacgtcagc tcgatcctca acgatcaatt gctgggcgac
     1081 cagcgcaaat atggcctgct gctcgcgacc gcgcacggca ccggctatcg cccgctcgtc
     1141 gctgcgactg aagcggaggt ggacggcaag ctgtcgcccg acgcggccaa cgccgcgcgt
     1201 gccgccgcgg cggtgatggc gatgaacaat gtctattacc gcttcacgca cctcgcttcg
     1261 aacccggaat accagactat gcccgcaaag ctgcggatga acgtgatcgg caatcccggc
     1321 atcgacaagg cggacttcga gctgttcagc ttggccgtct ccgcccagaa tggctgcggc
     1381 atgtgcatcg acagccacga aaaagtgctg cgccagcaca gcgtcaatgc cgagacgatc
     1441 caggcggccg ctcgtatcgg cgcggtgatg accgccgtgg cgacggtgca cagcgcgatc
     1501 aactgagcgc gactaactcc ggggcggttg gcgcctgtag ctgagcgcct cggccacatg
     1561 gatgcggccg accgtctccg cgcaggccag gtccgcgatc gtgcgggcga cgcgctgaat
     1621 gcgggtatag ccgcgggcag acagccgcat tgcctccgcc gcctgggcga gcagcttgcg
     1681 ccccggctcg tccggggtgg cgacagcttc cagcacggtg ccatccgctt cggcattggt
     1741 acgcacgcgg tgtccgttat agcgccgcgt ctgagcctcc cgagcggcgc ggacccggtc
     1801 ggccacttgt gcagagcctt cgctgggcgg cggcagcacc agatcggcgg cgctgaccgc
     1861 cgccacctcc acgtgcaggt cgatacggtc gagcaggggc cccgagactt tcgcctgata
     1921 gtcggcggcg cagcgcggag cgcgggcgca ggcgagggcg ggatcgccca gatgcccgca
     1981 acggcagggg ttcatggccg cgacgagctg gacgcgggcc gggaacgtca catgcgcatt
     2041 ggcgcgcgcg acgctgacat tgcccgtctc cagcggctgg cggagcgaat cgagcacgcc
     2101 gcgctgaaac tcgggcagct cgtccaggaa cagcacgccc agatgcgcca ggctcacttc
     2161 gcccggcctg gcacgaatgc cgccacccac cagcgctgcc atcgaggccg aatgatgcgg
     2221 cgcgcggaac ggccgtgtgc gcgagatgcg gccgccctcc agcgcgccgg cgacgcttgc
     2281 gaccatcgag acttccagcg cttcggcggg cgtgagctcg ggcaggatgc gcggcaggca
     2341 tgccgccatc agcgatttgc ccgcgcctgg cgggccgacc atcaatagat tgtgcccgcc
     2401 cgcggcggcg atctcgagcg cccgcttggc ggtttcctgc cccttcacct gggccagatc
     2461 gggcccgtga ttcggggcat cggcgtcgcc gggcgccggg gcggggagca gagccgagcc
     2521 gcgcagatgg ttgagcagtg ccagcagatc gggggcggcg agcacttcga tcgaaccggc
     2581 ccaggccgct tcgccgccct gtgcgtccgg acagataagg ccgagcccgc gctcggacgc
     2641 atgcagcgcc gccagcaacg cgccggggca gggggcgatg cgcccatcga gccccagctc
     2701 gccgaccgcg acatactggc cgagcgattc gatgtcgatc acgcccatgg ccgccagcag
     2761 gcccagcgcg atcggcaggt cgtaatgcga gccttccttg ggcaggtccg cgggcgacag
     2821 gttgacggtg atgcgcttgg gcggcagcga caggcccagc gaggcgatcg ccgcgcggac
     2881 gcgctcgcgg ctttcggcca ctgccttgtc gggcaggccg accacgacaa acccgggcat
     2941 gccgggcgcg atctgaacct gaacttcgac ggcgcgcgcc tccagcccca gataggcgca
     3001 cgtcgaaaca atggcgacca tgaaactccc ccctgaatca ggcgcatagt ctggggcgcg
     3061 acgtgatgtc gagcgtcctg cttgcgcgcg cctgcgccgg tgcccatctg cggacgtgtg
     3121 aaagcgcctc ccgattccgt gctgcgtctc gtctatctcg gccttggctg gttgctgctg
     3181 atcctggcgc cgatcgtcgg cgcactgccg gggccgggcg ggatcttcat tttcgccgct
     3241 ggcgccgcgt tgctgctcaa gaactcgaat tgggtgaagc gcgcctatgt ccgcttcagc
     3301 cggcgctatc ccaaatatgg ccgcctcgcc gatcgcggct tgcgccggcc ccccgcgccg
     3361 cgcggccgtg caaaacccga gcgagccgat tgacttttct gacgagcccg cttaaccgcc
     3421 cgccaatggt gcggccgccc ttgtttggcg gccctttttg ttcagatttt gaggaatgag
     3481 cgatgaagcg cacgtttcag ccgagcaacc tggtgcgcaa gcggcgtcac ggcttccgcg
     3541 cgcggatgtc gacggtcggc ggccgcaagg tgctggccgc gcgccgcgcc cgcggccgca
     3601 agacgctgtc ggcctaaaga agctcacgcg ccgcgccgac ttcctcgcgg ccaatgctgg
     3661 ccggcgggcg ccgatgcccg gtttcgtgct tctcgtccgc ccgcgcgacg acgatgatca
     3721 ggcgatgcgc tacggcatta ccgtcacgaa gaagatcggc ggcgcggtgg tgcgcaaccg
     3781 gatgaagcgc cgcttccgcg cgcttgtgca ggagctgctg ccggaacagg gcgtgcccgg
     3841 cgccgatcac gtgctgatcg gccgcgccgg gggcgtcgag cgggatttcg gcctgttgcg
     3901 cacagagctg caaaaggcgc tcgggaggct cgccaagtga cgatcgtctc ccggcgcatg
     3961 ctgatcggcc tcgcccgttt ctggcagcgc tacccctccg ccatcctcca accctcgtgc
     4021 cgttacacgc cttcatgttc ggcctatgca atcgaggcgc tggagcgcta tggcgcggcg
     4081 cggggcggct ggctggcgct caaacgcgtg tgccgctgcc accccttagg cgggcacgga
     4141 tacgaccccg tcccatgatt ggagcgacgc ttggataatc agcgcaacat gatccttgcg
     4201 atcgtgctct cggccctcgt gctgctcggc tggagcctgt tatcggaccg gctgctgccg
     4261 accgccaacc cgcccgcgac caaggtggtg cagggcaagc aggtgccggt gccgccgccg
     4321 gccacggtgg cgcccaaggc cgttcaggac cgcgcgacag tgctgcgcga gagcatggga
     4381 cagcgcgtgc ggatcgacac gccttccgtc gccggctcga tcaatctcaa gggcgcgcgc
     4441 gtcgacgatc tggtgctcaa acggcatcgc gagacgatcg cgaagaatgc gccgccggtg
     4501 cgcttgctgt cgcccgaagg cgggccgcag ccgatctacg cgcaattcgg ctgggccggc
     4561 cagggcgtcc agctgccggg caacgacacc gtctggcagg cggacggtac gctgctcgcg
     4621 ccgggccatc cagtcacgct gagctggtcg aatgggtcgg gtcagacgtt ccgcatccgg
     4681 ctgtcgatcg accagaatta catgatcgcg gccgaacaga gcgtggcgaa tggcggttcg
     4741 gcgccggtcg ccgttcggcc cttcgcgctc gtcaagcaca ccgggctctc gcccgatccg
     4801 gacacctgga cggtgcatac cgggccgatg ggcgtgttcg acggcgtcgc gaactacagc
     4861 atcaagtcca aggatctgga cggcgccggg ccggagggca aaagctttac gtcgactggc
     4921 gggtggctcg gcttcaccga caaatattgg ctgaccgcaa tcatcccgcc tcagggtgcg
     4981 catgtgaacg cctcgttccg cagcatcggc gacaaggttt atctcgccgc gttcacgccg
     5041 accgaccagg cggtgctcgc gcccggcaag gcggccactt cgacatcgca tctgttctcc
     5101 ggtgcgaagg aagtcggcgt gctccaggcc tatgagcgcg acctcaagat cacgcagttc
     5161 gacaaggcga tcgattgggg ctggttcgcc tttttcgagc gtccgatctt ctggctgctc
     5221 gactatctgt tcaaggcggt ggggaatttc ggattcgcga tcatcctgct gacgctgatc
     5281 gtgcgcggcg cgatgttccc gatcgcgcag cggcaattcg cctcaatggc ggcgatgcgc
     5341 gcacttcagc ccaaggtgaa agcgctgcag gagcggcaca aggaggacaa gcagaagctg
     5401 cagcaggaaa tgctggagct ctacaagcgc gagaaggtca acccgctcgc cggctgcctg
     5461 ccgatcgtga tccagatccc gatcttctac gccctctaca aagtgctgat cctgacgatc
     5521 gagatgcgcc accagccctt catcctctgg atcaaggatc tgtccgcgcc ggatccggcg
     5581 accgtggtca atctgttcgg ctatctgccc ttcacgccgc cgcacttcct ggcgctcggc
     5641 gtgctgccga tcctgctcgg catcaccatg tacatccagt tcaagctgaa cccggcccag
     5701 atggacccgg cgcagcagca ggtcttctcg atcatgccct gggtgttcat gttcatcatg
     5761 tcgggattcg cggccgggct gcagctctac tggacggtct ccaacctgtt ggcgatcgcg
     5821 cagcagaaat tcctgtacag ccgctatccg gcgctcaaga acgcgcccgg gaccgccacg
     5881 acctgatgga cggggaactg atcgaacaag cccgcaagct gttcgccggg ccgatcgcgt
     5941 tcctgaaatc ggcgccggat ctcaagttcc tgcccgaccc tgaggcgccc gaagtggcgt
     6001 ttgcgggccg gtcgaacgtg ggcaagtcgt cgctgctgaa cgcgctgacc ggccgcaatg
     6061 ggttggcgcg cacttcgaac acgcccggcc ggacgcagga gctcaatttc ttcgatgtcg
     6121 gcgagcccct cgtgctacgc ctcgtcgaca tgcccggcta tggctttgcg aaggcgccga
     6181 aggacctggc ccgcaaatgg cgctacctgg tcaatgactt cttgcgcggt cgcgcggtgc
     6241 tgaagcgggt gctggtgctg gtcgatagcc gccatgggct gaaggatgtc gatcgcgagc
     6301 tgatggacat gctcgaccag gccgcggtca gctatcgac
//
LOCUS       DASQVK010000321         2108 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_273279,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000321 DASQVK010000000
VERSION     DASQVK010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2108
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273279"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..448)
                     /locus_tag="VE567_06865"
     CDS             complement(<1..448)
                     /locus_tag="VE567_06865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-eliminating lyase-related protein"
                     /protein_id="HYZ48596.1"
                     /translation="MRFFSDNAAAAHPAVLDALRAANALDTAYDGDAWSKRLDGAFSD
                     LFERAVRAIWVPTGTAANSLALAALCPAYGGIICHREAHINVDECGAPEFFTAGAKLL
                     LAEGPGAKLTPGSVEAVAGAIRPDVHQVQPHALSITNATEYGLAYTP"
     gene            646..1263
                     /locus_tag="VE567_06870"
     CDS             646..1263
                     /locus_tag="VE567_06870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010219096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HYZ48597.1"
                     /translation="MKKWILAATAAAAMGLTGAASAAVITLQSVTQNGPSDFTWSYQG
                     TLGPDEGLRSGDNLIIYDFAGYIPGSIFSPSANVTTSVEFLSPTGVVQPGFSDDPTIP
                     NLVFTYVGPDFRASGGPFAPLDFNGLGARSTFNNRIQDAFFTLTTKNNPDNTPGGTGS
                     PIYTLGQVTVPQAVPEPATWAMMLGGFGLAGMAMRRRPRIARVAA"
     gene            1330..1935
                     /locus_tag="VE567_06875"
     CDS             1330..1935
                     /locus_tag="VE567_06875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014077393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HYZ48598.1"
                     /translation="MKKYILGAIAALGLAAPASAAVLTLQGITPSGPNDFTYSYQATL
                     GPDEGVRNGNRFVIFDFAGYIGGSIFSNSPNFALNVENSSPSALVTPGFNDDPSIPNL
                     VFTYTGPDFRNTGGPFSSFDFPSIGAHSTFSGTVIDAFFATTTKNNPVGEANRLLFTL
                     GSISVPRSPVPEPSTWAMLLGGFGLIGLSTRRRGRMVRVAA"
BASE COUNT          369 a          685 c          657 g          397 t
ORIGIN      
        1 ccggcgtata ggcaaggcca tattccgtcg cgttcgtgat cgagagcgcg tgcggctgca
       61 cctggtgcac gtccggccgg atcgctccgg cgaccgcctc cacggaaccc ggcgtcagct
      121 ttgcccccgg cccttcggcg agcagcagct tcgcgcccgc ggtgaagaac tcgggcgcac
      181 cgcattcgtc cacattgatg tgcgcctcgc ggtggcagat gatgccgcca taagccgggc
      241 agagcgccgc cagcgcgagc gaattcgcgg ccgttcccgt cggcacccag attgcgcgca
      301 ctgcccgctc gaacaggtcg gaaaaggcgc cgtccagccg tttggaccag gcatcgccgt
      361 cataggcggt atcgagtgcg ttggcggcgc gaagcgcgtc cagcaccgcg ggatgcgccg
      421 cggcggcatt gtctgaaaaa aagcgcatgg ccgcgcccct tgcagcgctt tggccggccg
      481 gtcaacgcgg ctgtgaggcc cccgccgcac cccgaaaaaa aagattaatc gcgagtgaac
      541 cggaatacct tcagcgtgtt ctgaccgtcg aggtgccgtc tcgcagctgc gaagccggca
      601 acttgcatat gggcggggga tcgacttgca cagggagctt gagatatgaa aaagtggatt
      661 ttggctgcga cggcggccgc ggccatgggc ctgacaggcg cggcaagtgc agctgtcatc
      721 acgctgcaaa gcgtcactca gaacggtccc agtgacttta cctggagcta ccagggcacg
      781 ctcggccccg atgagggcct ccgctctggc gacaacctca tcatctacga cttcgccggt
      841 tatattcccg gctcgatctt ctcgccgtcg gcgaatgtca cgacgtcggt ggaattcctc
      901 tcgccgaccg gcgtcgtcca gcccggcttc agcgacgatc cgaccattcc caacctggtc
      961 ttcacctatg tgggtcccga tttccgcgcc tcgggcggcc cgttcgcgcc gctcgacttt
     1021 aacgggctcg gcgcgcgctc gacgttcaat aacaggattc aggacgcgtt cttcacgctg
     1081 acgacgaaga acaatcctga caataccccg ggcggcaccg gctcgcccat ctatacgctt
     1141 ggtcaggtca cggtgccgca ggccgttcct gaaccggcga cctgggcgat gatgctcggt
     1201 ggtttcgggc tcgccggcat ggcgatgcgc cggcgtccgc gcatcgcgcg cgtcgcagct
     1261 tgatatcgtt cgcgcctgcc cggcctcttg tcgggcaggc gcgatagatt gaccgaaggg
     1321 agcacgctca tgaaaaaata tatcctgggg gccattgccg cactcggcct tgctgcgcct
     1381 gccagtgcgg cggtgctcac gctgcagggg atcaccccta gcggccctaa cgacttcacc
     1441 tacagctatc aggcgacttt gggccccgat gagggcgtcc gcaacgggaa ccggttcgtg
     1501 atcttcgatt tcgccggcta tatcggcggt tcgatcttca gcaatagccc gaatttcgcg
     1561 ctcaatgtcg agaacagctc gccgtcggcc ttagtcacgc cgggcttcaa cgacgatccg
     1621 tcgatcccga atctggtgtt cacttatacc ggacccgatt tccgtaacac aggtggcccg
     1681 ttttcttcct ttgatttccc gtcgatcggg gcgcactcga ctttcagtgg cacggtcatc
     1741 gacgccttct ttgccacgac gacaaagaac aatccggtgg gtgaggccaa tcggctgctg
     1801 ttcacgctcg gcagcatctc ggtcccgcgc agtccggtgc ccgagccgtc gacctgggcg
     1861 atgctgctcg gcggctttgg cctgatcggg ctgagcacgc ggcggcgcgg caggatggtg
     1921 cgcgtggcgg cctaaaacag aataaaaagg ggtgaaatga cgccgctgct aaatcgcgca
     1981 gcggcgtcat ttttgtcgtg aaacaggata ttgcagctag agcgcgggac agcggtctcg
     2041 ccgcccctcc cgtcagccga agcgtccggt cacgtaattg cgcgtgcgca caaggcgcgg
     2101 cgtcgaaa
//
LOCUS       DASQVK010000322         3842 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_83808, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000322 DASQVK010000000
VERSION     DASQVK010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3842
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83808"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1258
                     /locus_tag="VE567_06880"
     CDS             <1..1258
                     /locus_tag="VE567_06880"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010215701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HYZ48599.1"
                     /translation="GHEVVREYYVNDAGGQVDVLARSAHLRYREALGEDIGEIPQGLY
                     PGDYLKPIGETLAKEFGPRFVDAPESEWLTLFRERAVAAMIELIKADLALLGIHHDLF
                     SSEAEVQAAGKPAQAEQWLRQRDLVYDGYLEAPKGETPEDWEPVELPLFRSTRFGDDQ
                     DRPIRKSDGSWTYFGADMAYHFQKAQGVDALIDIWGADHAGTVKRIKAAVAALTENKV
                     QFDVKLIQMVRLLRAGEPVKMSKRAGNFVTLADVVREVGKDVVRFTMLTRKADAQMDF
                     DFAKVVEASKDNPVFYVQYAHARICSIRRRIAEAGIDCAGAPDLDRLDAEELALVKLA
                     AQFPRVVEGAATAREPHRIAFYLYDLAAAFHAFFNMGNDRPDRRVLVADDPATTCARL
                     YLVEAIGQIIRNGLGIMGVTAVEEMH"
     gene            1258..1977
                     /locus_tag="VE567_06885"
     CDS             1258..1977
                     /locus_tag="VE567_06885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007711700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HYZ48600.1"
                     /translation="MAHDPFALSDEDRLPWLEPVDEVEESGHRPSLRWLAPVLGLLLL
                     GAIAIGGVWWWQNREIAPSGTGELIAAPKEPYKVKPAEEGGTRFEGQGDVVYQTSQGG
                     QVQGSLDLNAVPETPVTRTPAPQPKAEPKPAKSAVAAVEDSGEKLAAKAPPAPIAPEG
                     AAGATLQLGAFPSEAVAKKTWESMSKRFAYLAELNSSIMKAEVNGHTYYRLRVNAGSA
                     PQAKDVCARLRVAGENCLVVN"
     gene            1982..2983
                     /gene="nagZ"
                     /locus_tag="VE567_06890"
     CDS             1982..2983
                     /gene="nagZ"
                     /locus_tag="VE567_06890"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HYZ48601.1"
                     /translation="MKPVIYGLAGLELTPDERAFFKDADPAGYILFRRNCEDRAQLRA
                     LTDALRDLHGCDLLIMIDQEGGRVARMQPPEWPAFPAGAMFDALYDKAPISAIEAARA
                     NGEAIGLTLSEAGITVDALPLLDVRQEGADAVIGDRALGAEPMRVAALGRAVLEGLQA
                     GGVTGIVKHMPGHGRVLVDSHKALPVVEATEQELETDLAPFRQLAWAPIGMTAHIVYT
                     AWDAARPGTLSHYVVQRIIRERIGFDGLLMTDDIDMKALSGTPAEKACGAIEAGVDLV
                     LDCWARMDEMVAIADALPEARERTRERLEKALAFRKAPDPTRLADLFAKRDDLLALS"
     gene            3131..>3842
                     /locus_tag="VE567_06895"
     CDS             3131..>3842
                     /locus_tag="VE567_06895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ScpA family protein"
                     /protein_id="HYZ48602.1"
                     /translation="MHTPLVNNADSDALTIDIDGWEGPLDLLLALARAQKVDLRELSI
                     LALVEQYLAFIADAKALKLEIAADYLVMAAWLAYLKSALLLPKDPTVDPSPEELALRL
                     QIRLQRLQAMREAGARLMARDRIGRDVFLRGAPDGLRTVRKSDWQADLYELIAAYGAV
                     MARTRPVVHQVMRRPVMSLEDALHRLEAMLGQKVDWTRIEAFLPAISDPQFRRSALAS
                     SFVAALELAKQGKAELMQD"
BASE COUNT          647 a         1246 c         1332 g          617 t
ORIGIN      
        1 gggccatgag gtggtgcgcg aatattatgt gaacgatgcc ggcggccagg tggacgtgct
       61 cgcccgctcg gcgcacctgc gctaccgcga ggccctgggc gaggatatcg gcgagattcc
      121 gcaaggcctt tatccgggcg attatctgaa gccgatcggg gaaacgctgg cgaaggagtt
      181 cggcccgcgc ttcgtggatg cgccggagtc cgaatggctg acgcttttcc gtgagcgggc
      241 ggtggcggcg atgatcgagc tgatcaaggc cgatctcgcg ctgctcggca tccatcacga
      301 cctgttctcg tccgaagccg aagtgcaggc ggccggcaag cccgcgcagg cggaacaatg
      361 gctgcgccag cgcgaccttg tttatgacgg gtatctggag gcccccaaag gcgagactcc
      421 ggaggattgg gagccggtcg agctgcccct gttccgctcg acgcgctttg gcgacgatca
      481 ggaccggccg atccgcaagt cggacggcag ctggacctat ttcggcgcgg acatggccta
      541 tcacttccag aaggcgcagg gcgtcgatgc gttgatcgac atctggggcg cggaccatgc
      601 cggcactgtc aagcggatca aggcggcggt cgcggcgctc acggaaaaca aggtccagtt
      661 cgacgtcaag ctgatccaga tggtgcgtct cctgcgcgcg ggcgagccgg tcaagatgtc
      721 gaagcgcgcc ggcaatttcg tgacgcttgc cgatgtggtg cgtgaagtcg gcaaggacgt
      781 ggtgcgcttc accatgctca cccgcaaggc cgatgcgcag atggacttcg acttcgccaa
      841 ggtggtcgaa gcctcgaagg acaatccggt cttctacgtc caatatgccc atgccaggat
      901 ctgctcgatc cggcggcgca ttgccgaggc ggggatcgac tgtgcgggag cgccggacct
      961 cgaccgcctc gacgccgagg agctggcgct ggtgaagctc gcggcgcaat tcccgcgcgt
     1021 ggtggagggc gcagcgacag cgcgcgagcc gcaccggatc gccttctatc tttacgacct
     1081 cgccgccgcc ttccatgcct ttttcaacat gggcaatgat cggcccgacc ggcgcgtgct
     1141 ggtcgccgac gatccggcga cgacgtgcgc gcgcctttat ctggtcgagg caatcgggca
     1201 gatcatccgc aacggcctcg gcatcatggg ggtgaccgcg gtcgaggaga tgcattgatg
     1261 gcgcacgacc ctttcgcgct gtcggacgaa gaccggctgc cctggctcga gccggtcgac
     1321 gaagtcgagg agtccggcca tcggccgtcc ctccgctggc tcgcgccggt gctggggctg
     1381 ctcctgctcg gcgcgatcgc gatcggcggc gtctggtggt ggcagaatcg cgagatcgcg
     1441 ccctcgggca cgggcgagct gatcgccgcg cccaaggagc cctacaaggt gaagcccgcc
     1501 gaggagggcg gcacgcgctt cgaggggcag ggcgatgtcg tttatcagac cagccagggc
     1561 ggccaggtcc agggttcgct cgacctcaac gctgtgcccg aaaccccggt gacgcgcacg
     1621 cccgcgcccc agccaaaggc agagcccaag ccggccaaga gcgcggtcgc ggcagtcgag
     1681 gacagcggcg aaaagctggc ggccaaggcg ccgcccgccc cgatcgcgcc cgaaggtgcc
     1741 gccggcgcca cgctccagct cggcgccttt cccagcgaag cggtcgcgaa gaagacctgg
     1801 gagtcgatgt cgaagcgctt cgcctatctc gccgaactca attcgtcgat catgaaggcc
     1861 gaagtaaacg gccacactta ttaccgtctc cgcgtcaatg ccggctcggc cccccaggcc
     1921 aaggacgttt gcgcccggct ccgcgtggcg ggcgagaatt gcctggtggt gaactaaggc
     1981 cgtgaagccg gtcatctatg gccttgccgg ccttgagctg acgcccgacg agcgcgcctt
     2041 tttcaaggat gccgatcccg ccggctacat tctgttcagg cgcaattgcg aggaccgggc
     2101 gcagctccgg gcgttgaccg acgcgctgcg cgacctgcac gggtgcgacc tgctgatcat
     2161 gatcgaccag gaaggtggac gggtcgcgcg gatgcagccg cccgaatggc cggcctttcc
     2221 ggcgggggcg atgttcgacg cgctgtacga caaggcgccc atctcggcga tcgaggcggc
     2281 gcgggcgaat ggcgaggcga tcggactcac gctcagcgaa gccggcatca ccgtcgatgc
     2341 gctgccgttg ctcgacgtgc ggcaggaagg cgcggacgca gtcatcggcg accgcgcgct
     2401 cggcgccgag ccgatgcgcg tcgccgcgct cggccgcgcc gtgctcgaag ggctgcaggc
     2461 cggcggcgtg accgggatcg tcaagcatat gccggggcac ggccgggtgc tggtcgacag
     2521 ccacaaggcg ctgccggtgg tggaggccac cgagcaagag ctggagacgg acctcgcgcc
     2581 gttccgccag ctcgcctggg ccccgatcgg catgaccgcg cacatcgtct ataccgcctg
     2641 ggacgctgcc cggcccggca cgctctccca ttatgtcgtg cagcggatca tccgcgagcg
     2701 gatcggcttc gacggcctgt tgatgaccga cgatatcgac atgaaggcgc tctccggcac
     2761 gcccgccgaa aaagcgtgcg gcgcgatcga ggccggagtc gatctggtgc tggattgctg
     2821 ggcccgcatg gacgagatgg tcgcgatcgc cgacgccttg ccggaagcaa gggagcgcac
     2881 gcgcgaacga ctggagaaag cgctggcgtt ccgcaaggcg cccgatccca cccgcctcgc
     2941 ggacctcttc gccaaacgcg atgacctgtt agccctgtcc tgaccgtcgt cccgaacttg
     3001 tttcggcaca agcgcgaggc aggcgtggtg ttcaagaata ggctccgctt caacaccgaa
     3061 cccatccaca gatttggaac ggcgcgaccc gtgtcccgaa acaagttcgg gatgacgaga
     3121 aggtgtttcc atgcatactc ccctcgtgaa caacgccgac tcggacgcgc tcaccatcga
     3181 cattgacggc tgggaagggc cgctcgacct gctgctggcg ctcgcgcggg cccagaaggt
     3241 cgatttgcgc gagctgtcga tcctggcgtt ggtcgagcaa tatctggcct tcatcgccga
     3301 cgcgaaggcg ctgaagctgg agatcgccgc cgattatctc gtgatggcgg cctggctggc
     3361 ttacctcaaa tcggcgctgt tgctccccaa ggacccgacc gtcgatccga gccccgagga
     3421 actggcgttg cggctccaga tccggctcca gcggctgcag gcgatgcgtg aggccggcgc
     3481 gcggctgatg gcgcgggacc ggatcggccg cgacgtattc ctgcggggcg cgccggatgg
     3541 cctgcgcacg gtgcgcaaga gcgactggca ggccgatctc tacgagctga tcgccgccta
     3601 tggcgctgtg atggcgcgca cgcggcccgt ggtgcatcag gtgatgcgac ggccggtgat
     3661 gagcctcgag gatgcgctgc accggctcga ggcgatgttg gggcagaagg tcgattggac
     3721 gcggatcgag gcgttcctgc ccgccatctc ggacccacag ttccgacgct ctgcgctcgc
     3781 gtccagcttc gtcgccgcgc tcgaactcgc caaacagggc aaggccgaac tgatgcagga
     3841 cg
//
LOCUS       DASQVK010000323         3037 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_83816, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000323 DASQVK010000000
VERSION     DASQVK010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3037)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3037)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3037
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83816"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..825
                     /locus_tag="VE567_06900"
     CDS             <1..825
                     /locus_tag="VE567_06900"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008602012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HYZ48603.1"
                     /translation="TAGLTYSFQNRSNIDAAYRATRIEDWYGEHDLDSVVRTLAGVPL
                     EFSPGEAWNYSIATDVLGLIIERIEGKKLDAVFRERLFAPLGMEDTFFQVPTDKLDRL
                     ADCYTMQPEKGAAMYDRGDESAWSRAPTQFSGGGGLVSSAADYHRFCRMLLNKGELEG
                     VRILAPKTVALMTANHLPGGADLASMSRSLFSEATNAGVGFGLGFAVTINVAPTLVPG
                     SVGEYYWGGMFSTAFHIDPVERLIFIFMTQLSPSNTYPVRRELKTMIYSSITGPAA"
     gene            822..2135
                     /locus_tag="VE567_06905"
     CDS             822..2135
                     /locus_tag="VE567_06905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010216554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HYZ48604.1"
                     /translation="MSRSALETVAAIRAGETSAVAETEAAILRIEAGDGTINAVVVRD
                     FDRAREQARAADARLTDGDPAPLLGLPMTVKESFDIAGLPTSWGFAEHAGHIAHADSV
                     AVQRLKAAGAVILGKTNIATGLADLQCNNPVYGRTVNPLDPERVCGGSSGGAAAALAA
                     GFVTAELGSDIGGSIRTPAAFCGVWGLKATYGIINNNGHFLPGTDAASEAMGVMGPMA
                     RNADDLASLLDVLADFPLPRVEPLEPGPLSILLLPEHPLARASAEVKRAVEAVGQAFE
                     REGAEVERAPDIFPDLAAQHGNYMKMLLTALSRGAPGPRGEAMPLKSWFALEDEQVRC
                     IRAWQRLFREYDAVIAPVFGTTAFPHDDTPSQERVLTIDGEATPFGAQFAYAGLATFP
                     NLPSASVPVAAGADGLPIGLQVICDLYQDHKAIEIGRLAQALMRS"
     gene            2139..>3037
                     /locus_tag="VE567_06910"
     CDS             2139..>3037
                     /locus_tag="VE567_06910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYZ48605.1"
                     /translation="MSDLDSFRAEVRAWLEANCPPSMREPVRGEQDIVWGGRKAKLSP
                     DQKAWLDSMASRGWTVPDWPKEFGGGGLPPEETKILRQEMARLGCRNPLNSFGISMLG
                     PALLKYGTEEQKKRFLPPIARGEIRWCQGYSEPNAGSDLAGLQTSAEDKGDHFLVNGQ
                     KVWTSYADKADWIFCLVRTSKESKQGGISFLLFDMDSPGVSTRPILLISGYSPFCETF
                     FDNVEVPKDQLLGELNKGWNVAKYLLGHEREMISGMGLGGGGLGSGGPAALAEDAKRT
                     IGVDAEGRLADSLLRAQMALFEVR"
BASE COUNT          523 a          995 c         1019 g          500 t
ORIGIN      
        1 accgcgggcc tgacctacag cttccagaac cgcagcaata tcgacgcagc ctatcgcgcg
       61 acgaggatcg aggattggta tggcgagcac gacctcgaca gcgtcgtgcg cacgctcgcc
      121 ggtgttccgc tcgaattctc gccgggcgag gcgtggaatt attccatcgc caccgatgtg
      181 ctcgggctga tcatcgagcg gatcgaaggc aagaagctcg acgcggtgtt tcgcgagcgc
      241 cttttcgcgc cgctcggcat ggaagacacg ttctttcagg tgccgacgga caagctcgat
      301 cgcctcgccg attgctacac catgcagccg gaaaagggcg cggcgatgta cgatcgcggc
      361 gacgaaagcg cctggtcgcg ggcaccaacc caattctccg gcgggggcgg gctggtttcg
      421 agtgcggccg attatcaccg cttctgccgg atgctcctga acaaaggcga gctggaaggc
      481 gtacgcatcc tcgcgcccaa gacggtggcc ctaatgaccg caaaccatct gcccggcggc
      541 gcagacctcg ccagcatgtc gcgctcgctg ttcagcgagg caaccaatgc gggcgtcggc
      601 ttcgggctgg gatttgcggt gacgatcaac gtcgcgccga cgctggtccc cggttcggtc
      661 ggcgaatatt attggggcgg gatgttctcg accgcgttcc acatcgatcc ggtcgagcgg
      721 ctgatcttca tcttcatgac tcagctcagc ccttcgaaca cctatccggt ccggcgggag
      781 ctgaagacga tgatctattc ctccatcacc gggccggcgg cgtgagccga tccgcgctcg
      841 agaccgtcgc ggcgatccgc gcgggggaga ccagcgcagt cgcggagacc gaagcggcga
      901 tcttgcgcat cgaggctgga gacggcacga tcaacgccgt cgtcgtgcgc gatttcgacc
      961 gcgcgcgcga gcaggccagg gccgccgacg cgcgccttac cgatggcgat ccggcaccgc
     1021 tgctcggcct gccaatgacg gtcaaggaaa gcttcgacat tgcgggcctg ccgaccagct
     1081 ggggttttgc cgagcatgcc ggccatatcg cccatgccga ttccgtcgcc gtgcagcggc
     1141 ttaaggcggc cggcgcagtg atcctcggca agaccaatat cgcgaccggc ctcgccgatc
     1201 tgcagtgcaa caatccggtc tatggccgga cggtcaatcc gctcgatccg gagcgcgtgt
     1261 gcggcggctc gtccggcggt gcggcggcgg cgttggcggc cggcttcgtc acggccgagc
     1321 tcgggtcgga catcggcggg tcgatccgca cgccggcggc cttctgcggc gtttggggcc
     1381 tcaaagccac ctacgggatc atcaacaata acggccattt cctacccggc accgacgccg
     1441 cgagcgaggc gatgggcgtg atggggccga tggcgcgaaa cgccgacgat cttgccagcc
     1501 tgctggacgt gctcgccgat tttcccctgc cgcgcgtcga gccgctggaa cccggcccgc
     1561 tcagcatcct gctgctcccc gagcatccgc tcgcccgcgc ctccgccgag gtgaaacggg
     1621 cagtggaagc cgtgggccag gcgttcgagc gcgaaggcgc cgaagtcgag cgcgcgcccg
     1681 acatcttccc ggaccttgcc gcccagcacg gcaattacat gaagatgctg ctgaccgcgc
     1741 tgtcacgagg cgcgccaggg ccaagggggg aggcgatgcc gctaaagtcc tggttcgccc
     1801 ttgaggacga gcaagtgcgc tgcatccggg cctggcaaag gctgttccgc gaatatgatg
     1861 cggtgatcgc gccagtgttc ggcaccaccg ctttcccgca cgacgacacg ccgagccagg
     1921 agcgggtgct gacgatcgac ggcgaagcga cgcctttcgg cgcgcaattc gcctatgccg
     1981 gcctcgccac tttcccgaac ctgccgtccg ccagcgtgcc ggtggcggcc ggcgccgacg
     2041 gcctgccgat cggattgcaa gtgatctgcg atctctatca ggaccataag gcgattgaga
     2101 tcgggcgcct cgcccaggcg ctgatgagga gttgagccat gagcgacctc gatagcttcc
     2161 gcgccgaggt gcgtgcctgg ctggaggcga attgcccgcc ttcgatgcgt gagcccgtgc
     2221 gcggcgagca ggacatcgtc tggggcggac gcaaggccaa gctctcgccc gaccagaagg
     2281 cctggctcga ctccatggcc tcgcgaggct ggacggtgcc cgactggccg aaggaatttg
     2341 gcgggggcgg gctcccgccg gaggaaacca aaatcctccg ccaggaaatg gcccggctcg
     2401 gctgccgcaa tccgctcaac agcttcggca tttcgatgct cggcccggcg ctgctcaaat
     2461 atggcacgga agagcagaag aagcgcttcc tgccgcccat cgcgcgcggg gagatccgct
     2521 ggtgccaagg ctattccgag cccaatgccg gttcagacct ggccgggctg cagacttcgg
     2581 ccgaagacaa gggcgatcac ttcctcgtga acggccagaa ggtgtggacc tcctacgccg
     2641 acaaggcgga ctggatcttc tgcctggtgc gcaccagcaa ggaatcgaag cagggcggga
     2701 tcagcttcct gctgttcgac atggacagcc cgggcgtctc gacgcgaccg atcctgctga
     2761 tctccggcta ttcgcccttc tgcgagacgt tcttcgacaa tgtcgaagtg ccgaaggatc
     2821 agctcctcgg cgaactcaac aagggctgga acgtcgccaa atatctgctg gggcatgagc
     2881 gcgagatgat ctcgggcatg ggcctgggcg gcggcgggct cggctcgggc gggccagcgg
     2941 ccctggccga ggacgccaag cgcacgatcg gcgtcgatgc agaggggcgg ctcgccgatt
     3001 cgctgctccg cgcgcaaatg gcgctgttcg aagtgcg
//
LOCUS       DASQVK010000324         5838 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_83933, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000324 DASQVK010000000
VERSION     DASQVK010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5838)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5838)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5838
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83933"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..808)
                     /locus_tag="VE567_06915"
     CDS             complement(<1..808)
                     /locus_tag="VE567_06915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017670280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase S41"
                     /protein_id="HYZ48606.1"
                     /translation="MIKRWRNFGALLSLAAILSACGGGGGPSADSPTAQSPTPTPSSA
                     TCSLASRQNWAFGVLQEWYLFPETLPASLDPSPYATVGDYVDALTATARSQGRDRFFT
                     YLTSIKEEDAYYNSGSTAGFGFRLSTDAAQKRAFVAEAFETAPAFAAGLDRGDEILAI
                     GDTPGNLRLVSDIIATEGTGGVSNALGPSTVGITRTLRLSGPSGTREITITKADYSLQ
                     PVSNRYGATIIVDGGRQIGYLNLRTFITTADTQLRTAFDQFRQAGVTDLIV"
     gene            complement(863..3247)
                     /gene="pheT"
                     /locus_tag="VE567_06920"
     CDS             complement(863..3247)
                     /gene="pheT"
                     /locus_tag="VE567_06920"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020817518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HYZ48607.1"
                     /translation="MKFTLSWLKEHLETDASLEQIVETLTRIGLEVEGVENAAEKLAP
                     FRIAKVLTAERHPQADKLQVLSVDAGEGPVQVVCGAPNARAGLVGVFGAPGAYVPGSD
                     LTLKVAAIRGVESRGMMCSARELELGEDHDGIIELAADAPVGAAYAEWAGLNDPVIDV
                     AITPNRQDCMGVRGIARDLAAAGLGTLKPLGDVYRMGELKAVAGKDPAPDVRADDPEG
                     CPAFYAQAVSGVTNGASPAWMTVKLKAIGQKPISVLVDITNFISLDLGRPLHVYDRAK
                     LSGPLVARRARPGEQVLALNGKTYALDETMTVIADDVAVHDIGGIMGGEHSGVSEATT
                     DVLIECAYFTPEHIARTGQKLGLTSDARQRFERGVDPAFLDDGLALATRLVLEHCGGT
                     PSAVTRAGQPPVARKALRYDPALCERLGGLAVPADEQRAILERLGFQASVDWAVTVPT
                     WRRDIDGQADLVEEVVRIAGIDKVPSTPLPRAEGVAKPTATPEQLIERKVRRTAAARG
                     LNEAVTWSFISESEAAALGGGAWALANPISEDMKVMRPSLLAGLLAAAQRNTDRGAKS
                     VRLFELGRRYLADAERPTMGFVLAGERAARDWQNGKAQPFDAFDAKAETLALLDAAGA
                     PVENLQVMGEASAAYHPGQSATLRLGPKTVVGEFGALHPALIKRFGLEGTVVAGEIFL
                     DAIPARRASGRMRPAYVPPSLQAVTRDFAFIVPEALPAGDLVRAVRNADKTAIAGARL
                     FDIFTGSGVPEGHKSLAIEMTLQPVEKSFTDEDLAAISAKIVAAAAKLGASLRC"
     gene            complement(3244..4305)
                     /gene="pheS"
                     /locus_tag="VE567_06925"
     CDS             complement(3244..4305)
                     /gene="pheS"
                     /locus_tag="VE567_06925"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HYZ48608.1"
                     /translation="MTDIDQLKAEALSAVGEAATLEALEAERVRLLGKQGQVTALVKT
                     LGGMSPEHRQSEGPRINGLREAVSTAIAERKAMLENAALEARLASEWIDLSLPAPERP
                     RGSVHPVSQVMDELAEIFADLGFAVATGPEIEDDWHNFTALNIPETHPARAMHDTFYF
                     PDGKLLRTHTSPVQIRTMQSQQPPIRVIAPGRVYRSDSDATHTPMFHQIEGLAIDRGI
                     HMGHLKWTLETFLKAFFERDDIVLRLRPSYFPFTEPSAEVDVGFTWKNGRRVLGGSEG
                     WMELLGSGMVHPRVLRNCGLDPDEYSGFAFGVGVDRLAMLKYGMDDLRAFFDGDLRWL
                     RHYGFAALDVPTLSGGVGA"
     gene            4443..4922
                     /locus_tag="VE567_06930"
     CDS             4443..4922
                     /locus_tag="VE567_06930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017181501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RcnB family protein"
                     /protein_id="HYZ48609.1"
                     /translation="MRKLLIPALIAATILPAVGASAQSYHEARQSQRDVRDARRDVQD
                     ARRYGDRRDIRDARENLRDARQEAREDWRDYRNSHRQLYTMRRYYAPRGLAYRPVATG
                     ARLAPAYWGRSYLISDPYRYRLPRAYGVQRWIRYGNDVVLVDTRNGHVIQVIRSFFY"
     gene            5023..>5838
                     /locus_tag="VE567_06935"
     CDS             5023..>5838
                     /locus_tag="VE567_06935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HYZ48610.1"
                     /translation="MRLALLLASAALALPAVLVAAPAAAAQPTADYDAQLKQLFQDSD
                     EAQLKLNPISAIFRGDMRYADRLGDFGSDAYYNASRAAAESDLQRLHAIPRDRLTPID
                     QIAYDVFEWQTLDTLKGLSPAILALTAVRPIDHFFGFHVFYPSFASGQGAAPFKTVLD
                     YENNLKRHRDYVAYLDRAILRFRQGMRTGVVQPKLIVNNVIEQLDTQINQGVEGSPFY
                     QPVTKFPEGISAAEQARLKTEYAAAIRDGIMPANVRLRDFLKNEYLPAARDGVG"
BASE COUNT          988 a         1989 c         1878 g          983 t
ORIGIN      
        1 cgacgatcag atcggttaca ccggcctggc ggaattgatc gaaggcggtg cggagttgcg
       61 tgtcggcggt ggtgatgaac gtgcgcaggt tcagatagcc gatttggcgg ccaccatcga
      121 cgatgatcgt cgcgccatat cggttggaca ccggctgcag cgaataatcg gccttggtga
      181 tcgtgatctc gcgcgtgccc gatgggccgc tcagccgcag cgtgcgcgtg atgccgacgg
      241 ttgaggggcc gagcgcgttc gagacgccgc ccgtgccttc ggtcgcgatg atgtccgaga
      301 cgagccgcag attgcctggc gtgtcgccga tcgccagaat ctcatcgccc cggtccaagc
      361 cggcggcaaa ggccggcgcg gtctcgaatg cctcggcgac aaaagcgcgc ttctgcgcgg
      421 cgtcggtcga caggcggaag ccgaaacccg cggtcgagcc cgaattataa taggcgtcct
      481 cttccttgat cgaggtcagg taagtgaaga agcgatcacg cccttgcgac cgtgccgtcg
      541 cggtcagagc gtcgacatag tcgccgacgg tggcgtaagg gctgggatcg agactggccg
      601 gcagcgtctc ggggaacaga taccattcct gcagcacccc gaacgcccag ttctggcgcg
      661 acgccagcga gcaggtagcg ctgcttggcg ttggcgtcgg agattgggcc gtcggcgaat
      721 cggcagaggg cccgccgccc ccgccgcaag ccgagagaat cgctgccaga ctcagcagcg
      781 cgccgaagtt acgccagcgc ttgatcaagg aaacttcccc tgcagatcag gcgcttatgg
      841 caaaatcaag ctgtcctgac aattaacagc gtagcgacgc cccgagcttt gccgcggccg
      901 ccacgatctt tgccgagatg gccgccagat cctcgtcggt gaagcttttc tccaccggct
      961 gcagcgtcat ttcgattgcg agcgacttat gcccttccgg gacgccgctg cccgtgaaga
     1021 tgtcgaacag ccgcgcgccc gcgatcgccg tcttgtcggc attgcggaca gcccggacca
     1081 gatcgcccgc cggcagcgct tcggggacga taaaagcgaa gtcgcgcgtc acggcctgca
     1141 gagagggcgg cacgtaagcg gggcgcattc gcccgctcgc ccgccgggcg gggatcgcat
     1201 cgaggaaaat ctcgcctgcg accaccgtgc cctccaggcc gaagcgcttg atcaacgccg
     1261 ggtgaagcgc gccgaactcg ccgacgacag tcttggggcc aagccgcagc gtcgccgatt
     1321 gaccgggatg ataggcggcg gaggcttcgc ccatgacctg gagattctca accggcgcgc
     1381 cggccgcatc gaggagcgcc aaagtttccg ccttggcgtc gaacgcgtcg aaaggctgcg
     1441 ccttgccgtt ctgccaatcg cgcgcggcac gttcgccggc cagcacgaag cccatggtcg
     1501 gccgctcggc atcggccagg tagcgccggc cgagctcgaa cagccgcacc gacttcgcgc
     1561 ccctgtccgt gttgcgctgc gccgccgcca gcaacccggc cagcagcgat gggcgcatga
     1621 ctttcatgtc ctcgctgatc gggttcgcga gcgcccaggc tccgccgccc agggccgccg
     1681 cttcgctttc ggaaatgaag ctccaggtca ccgcctcgtt gagcccgcgc gcggcggcgg
     1741 tccggcggac cttacgctcg atcagctgct cgggcgtcgc tgtgggcttc gccacgcctt
     1801 cggcgcgcgg cagcggggtc gagggcactt tgtcgatgcc ggcgatgcga accacttcct
     1861 cgaccagatc ggcctgacca tcgatgtcgc gccgccacgt cggtacagtt acggcccaat
     1921 cgacagaggc ttggaagccg agccgttcaa ggatcgcgcg ctgctcgtcg gccggcacag
     1981 cgaggccgcc gagccgttcg cacagagcgg gatcatagcg cagcgccttg cgcgcgaccg
     2041 gaggctggcc ggcacgcgtg accgcgctgg gcgtgccgcc gcaatgctcg agcaccagcc
     2101 gggtcgcgag cgcgagtccg tcgtcgagaa aggcaggatc gacaccgcgc tcgaagcgct
     2161 gccgcgcatc cgacgtgagg ccgagcttct ggcccgtgcg ggcgatatgc tccggcgtga
     2221 aataggcgca ctcgatcagc acgtcggtcg tcgcttcaga cacgcccgaa tgctcgccgc
     2281 ccatgatgcc gccgatgtca tggaccgcca catcgtcggc aatcaccgtc atcgtctcgt
     2341 cgagcgcata ggtcttgcca ttgagcgcga gtacctgttc gcccggcctg gctctgcgcg
     2401 cgacgagcgg tccgctgagc ttcgcgcggt catagacatg caagggccgg ccgagatcga
     2461 gcgagatgaa attggtgatg tcgaccaaca ccgagatcgg cttctggcca atggctttca
     2521 gcttgacggt catccaggcc ggcgacgcgc cgttcgtgac gccggacacc gcctgggcgt
     2581 agaaggcggg gcagccttcg ggatcgtcgg cacgcacatc gggggcaggg tctttacccg
     2641 ccacggcctt cagctcgccc atgcgataga cgtcgccaag aggcttgagc gtacccagtc
     2701 ccgccgccgc cagatcgcgg gcgatgccgc gcacgcccat gcagtcctgg cggttgggcg
     2761 taatcgccac atcgatgacc gggtcgttca gccccgccca ttcggcatag gccgcgccca
     2821 ccggcgcatc ggccgcgagc tcgatgatgc cgtcatgatc ctcgcccagc tcaagctcgc
     2881 gcgcggagca catcatgccc cggctctcga cgccgcggat cgccgccacc ttaagcgtga
     2941 ggtccgagcc cggcacatag gcgcccggcg cgccgaacac gccgaccagc ccggcgcggg
     3001 cgttcggcgc gccgcacacg acctgcaccg gcccttcgcc ggcatcgacg gagagcacct
     3061 ggagcttgtc cgcctgcgga tgccgctcgg cggtcagcac tttcgcgatc cggaagggcg
     3121 caagcttctc ggcggcgttc tcgacgcctt caacttcaag cccgatccgc gtgagcgtct
     3181 cgacgatctg ctcgagcgaa gcgtcggttt cgagatgctc cttgagccag ctcagcgtga
     3241 acttcatgcg cccactcccc cggaaagcgt gggcacatcg agcgcggcga agccgtaatg
     3301 gcgcagccag cgcagatcgc cgtcgaagaa ggcgcgcaga tcgtccattc cgtatttgag
     3361 catcgcgagc cggtcgacac cgaccccaaa agcaaagccg ctatattcgt ccgggtcgag
     3421 cccgcaattc ctgagcaccc gcggatgcac catgccgctg ccgagcaact ccatccagcc
     3481 ttcgctgccg ccgagcaccc ggcggccatt cttccaggtg aagccgacat ccacttcggc
     3541 tgacggctcg gtgaacggga aatagctggg ccgcaggcgc agcacgatgt cgtcgcgctc
     3601 gaaaaacgct ttcaggaacg tttccagcgt ccatttgaga tgccccatat ggatgccgcg
     3661 atcgatcgcc agcccttcga tctggtggaa catgggcgtg tgcgtcgcat cgctgtcgga
     3721 gcgatagacc cggcccggcg cgatcacccg gatcggcggc tgctggctct gcatcgtccg
     3781 gatctgcacc ggcgacgtgt gggtgcgcag cagcttgcca tcggggaagt agaaagtatc
     3841 gtgcatcgcc cgggctgggt gtgtctccgg gatgttgagc gcggtgaaat tgtgccagtc
     3901 gtcctcgatc tcggggccgg tcgcgaccgc gaagcctaga tcggcgaaaa tctcggcaag
     3961 ctcgtccatc acttggctga ccggatgcac ggagccgcgc ggccgctcgg gtgccggcag
     4021 gctgaggtcg atccactccg aggcgaggcg cgcttcgagc gcggcgtttt cgagcatggc
     4081 cttacgctcg gcgatcgccg tcgaaaccgc ctcgcgcagg ccgttgatgc gcggcccctc
     4141 gctctggcgg tgttcagggc tcatgccgcc cagtgttttc acgagcgcgg tgacctggcc
     4201 ctgtttgccg agcaagcgca cgcgctcggc ctccagcgcc tccagcgtcg cggcctcgcc
     4261 gaccgcgctc agcgcctcgg ccttcagttg atcgatgtcc gtcatgccgg cgaccccaaa
     4321 gcaaaaggga acgggaggcg caagcaaagc gtctccgcgc cttgctgttt gctgacagcg
     4381 cgattccgga cgcgttcagg ctgcccgcgc catttcaacg ccgtccagtc aaggaggaca
     4441 tgatgcgtaa gctgcttatt ccggccctta tcgcggccac cattctcccc gccgtcggag
     4501 cctcggccca gtcctatcac gaagcacggc agagccagcg cgacgtgcgg gatgcccggc
     4561 gggacgttca ggacgcccgg cgctacggcg atcggcgcga catacgcgac gcgcgcgaga
     4621 atctgcgcga cgcacggcag gaagcccgcg aggattggcg cgactatcgc aactcccatc
     4681 gccagctcta cacaatgcgt cgctactacg cgccgcgcgg cctggcttac cgcccggtcg
     4741 cgaccggggc ccggctggcc cctgcctatt ggggccgctc ctatttgatc tccgatccat
     4801 atcgctaccg cctgccgcgc gcctatggcg tgcagcgctg gatccgctac ggcaatgacg
     4861 tggtgctggt cgacacgcgc aacggccatg tgatccaggt gatccgcagc ttcttctact
     4921 gaggctcacg ccctctcccc ggccggggag agggcattcg ctcttttctt ggccataata
     4981 gctgttctat aggcgcaaca cactttccgt ttggagattg cgatgcgcct tgccctgctg
     5041 cttgcttccg ctgcccttgc cttgcccgca gtcctggtcg ccgcgccggc ggccgccgcc
     5101 caaccgaccg ccgactacga cgcgcagctg aagcagctct tccaggacag tgacgaagcg
     5161 cagctcaagc tcaacccgat cagcgcaatc tttcgcggcg atatgcgcta tgccgaccgg
     5221 ctcggcgatt tcggcagcga cgcctattac aatgcttcgc gcgcggcggc ggaaagcgac
     5281 ctgcagcgcc tgcacgcaat cccgcgcgac aggctcacgc cgatcgacca gatcgcctat
     5341 gacgtgttcg aatggcagac gctggatacg ctgaagggct tgtcgccggc gatcctggcg
     5401 ctgaccgcgg tgcggccgat cgatcacttt ttcggcttcc atgtcttcta tcccagcttc
     5461 gcctcgggcc agggcgcggc gccgttcaag acggtgctgg actatgagaa caatctgaag
     5521 cggcaccgcg actatgtcgc ctatctcgac cgcgcgatct tgcgcttccg ccagggcatg
     5581 aggactggcg tcgtccagcc caagctgatc gtgaacaatg tgatcgagca gctcgatacg
     5641 cagatcaacc agggcgtgga aggatcgccc ttctaccagc ccgtgacgaa gttcccggaa
     5701 gggatttccg ccgccgagca ggcaaggctc aaaaccgaat atgccgcggc catccgcgac
     5761 ggcatcatgc ccgccaatgt gcggctgcgc gatttcctga agaacgaata tctgcccgcg
     5821 gcgcgggacg gggtcggc
//
LOCUS       DASQVK010000325         3397 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_51966, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000325 DASQVK010000000
VERSION     DASQVK010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3397
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51966"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..866)
                     /locus_tag="VE567_06940"
     CDS             complement(<1..866)
                     /locus_tag="VE567_06940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase family protein"
                     /protein_id="HYZ48611.1"
                     /translation="MTSFSSLLQPDRGQPARSVHAIDKASHDDWVKTLPPRAKAAAAA
                     QRFAGKAGELAILPGDNPEDWSAAIGVESAAALGPWDLAKAAETLPEGVFRLESGPGA
                     ALLGWLLAQHRFERYRKPETSTGPRVLLTGDVARIDEAVRQAEAVALVRDLVNTPTED
                     LGPVQLQEAVEQVANAHGASVRATTGDVLEDGFPLVHAVGRAAARDRAPRLIELEWGD
                     PAHPRIAIVGKGVCFDTGGLDIKPASGMRLMKKDMGGAAHALALAGLVMQANLPVRLH
                     LLIPAVENAVSAA"
     gene            950..1402
                     /locus_tag="VE567_06945"
     CDS             950..1402
                     /locus_tag="VE567_06945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48612.1"
                     /translation="MQHRIWAAAIAATASLPVQAAAPTISVSVSSNDRIGLDFSKSKG
                     RSAGSAVLGMWSDDGALELGGFQDGALAGTPDTLERTAELVSGKAMKTRGVRFAATIH
                     RKGPPEARGWTLGVEARQQRVSDIGAALGGAWRTAGDSRLSISGKLRF"
     gene            complement(1410..1868)
                     /locus_tag="VE567_06950"
     CDS             complement(1410..1868)
                     /locus_tag="VE567_06950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006962867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PA2169 family four-helix-bundle protein"
                     /protein_id="HYZ48613.1"
                     /translation="MIGSDKNVSTLNSLIATTIDSINGYRESAKEVENPRFRELFEQL
                     AQDREQALTQLRAEVARLGGEPEDDGTMAAAAHRGWVDLKSAITGRNDKAIVNEVERG
                     EDHIKHKFESALEDDDLSAECRSVVQRAYESVRRGHDRARDLKHSLEAAG"
     gene            complement(1964..2524)
                     /locus_tag="VE567_06955"
     CDS             complement(1964..2524)
                     /locus_tag="VE567_06955"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HYZ48614.1"
                     /translation="MLKKLMVCLTAAFAALMAPAAAEATVIQFSYDGTLAGSVNGFDF
                     DTAVTVNSQIDPDSLFAGPLVDLTHVTLDAPAVGITGFALPDLQLLPFPEGFLLGVND
                     APFAAFGLDFSTAVFLGNSVSVDGGLISAIPFTLNGLDFELTGGEGTFTFTIVPEAAT
                     WAMMILGFGLVGAAARRRSPAKAVLA"
     gene            2667..3179
                     /locus_tag="VE567_06960"
     CDS             2667..3179
                     /locus_tag="VE567_06960"
                     /inference="COORDINATES: protein motif:HMM:NF019614.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1697 domain-containing protein"
                     /protein_id="HYZ48615.1"
                     /translation="MTSYVALLRAVNVGGTGKLPMTELKAMCEKAGFDRVRTYIASGN
                     AAFAADGSEAEVKTALETRLEAYAGKKVGVLVRTAVEIADVLTANPYPDVPPAKVLVI
                     FLDEPPGRDALAVRRQTSEELRPGKREIYIHYPDGMGRSQLVVPAAKAGTGRNINTVK
                     ELARMAAEIS"
     gene            complement(3172..>3397)
                     /locus_tag="VE567_06965"
     CDS             complement(3172..>3397)
                     /locus_tag="VE567_06965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HYZ48616.1"
                     /translation="ISAARLAAKVGRTLPVIIDEVDDEGGATGRSQADAPEIDGNVLL
                     RDAPGLAPGDIVPVLVEAADDHDLFGVPVS"
BASE COUNT          609 a         1095 c         1145 g          548 t
ORIGIN      
        1 gcggcagaga cggcattctc caccgccggg atcagcaggt gcagccggac cggcagattc
       61 gcctgcatca ccagcccggc cagcgccagc gcgtgcgccg cgccgcccat gtccttcttc
      121 atcagccgca tgccggaggc aggcttgatg tcgagcccgc cggtatcgaa gcagacgcct
      181 ttgccgacaa tggcaatgcg cggatgcgcc gggtcgcccc attccaattc aatcaaccgc
      241 ggcgcgcgat cgcgtgccgc cgcgcggccg acggcgtgca caaggggaaa gccgtcctcg
      301 agcacgtcgc cggtcgtggc gcgcacgctc gcgccatgcg cgttcgcgac ttgctcgacg
      361 gcttcctgga gctggacagg tcccagatcc tccgtcggcg tgttgaccaa gtcacggacg
      421 agcgcgaccg cctcggcctg gcgcactgcc tcgtcgatcc gcgcgacatc gccggtcagc
      481 agcacgcgcg ggccggtgga cgtctccggc ttgcgataac gttcgaagcg atgctgggcg
      541 agcagccagc cgagcagcgc ggcgcccggc ccactctcca gccggaagac gccttcaggc
      601 agggtctccg ccgctttggc caggtcccag gggccgagcg ccgcggcact ctcgaccccg
      661 atcgcggctg accagtcctc gggattgtcg ccaggcagga tcgcgagctc gcctgccttg
      721 cccgcgaagc gctgggctgc agcagcagcc ttggcgcggg gcggcagcgt cttcacccag
      781 tcatcatgac tggccttgtc aattgcgtgg accgaccgtg ccggctgccc gcgatcaggc
      841 tgaaggagcg atgagaaaga agtcactaac catatccatc aaccaagatc ttaaggccac
      901 tcgcatattg gagtcgcgag cgcaaagcgc gagctgaaag cgaattcaaa tgcaacatcg
      961 gatatgggct gcggcgatcg cggcgacggc gagcttgccc gtgcaggccg ccgcgccgac
     1021 gatcagtgtt tcagtatcaa gcaatgaccg aatcggtctc gacttttcga agtcgaaagg
     1081 gcggagcgcg ggatcggccg tgctcggcat gtggagcgac gacggtgcgc tggagctggg
     1141 cggcttccag gatggcgcgc tcgccggcac gccggacacc ctcgagcgca ctgccgagct
     1201 ggtgtccggc aaggcgatga agacccgtgg cgtgcggttc gcggcgacca tccaccgcaa
     1261 gggaccaccc gaggcgcggg gctggacgct cggtgtcgag gcgcgtcagc agcgcgtgag
     1321 cgacatcggc gcggcgctcg gcggcgcatg gcgcaccgcc ggcgactcgc gcctgtcgat
     1381 cagcggcaag ctgaggttct gacgaaccct tagcccgcgg cttccagcga atgcttgagg
     1441 tcgcgggcgc ggtcatggcc ccggcggacc gattcatagg cgcgctgcac gacgctgcgg
     1501 cactcggccg agagatcgtc gtcttccagc gcgctttcga atttgtgctt gatgtggtcc
     1561 tcgccgcgtt cgacttcgtt gacgatcgcc ttgtcgttgc ggccggttat cgccgatttg
     1621 agatcgaccc agccgcgatg cgccgcagcc gccatcgtgc cgtcgtcttc cggctcgccg
     1681 cccaggcggg ccacttcggc cctgagctgc gtcaacgcct gctcacggtc ctgcgccagc
     1741 tgctcgaaca gctcgcggaa gcgcggattt tcgacctctt tggccgactc gcgatagccg
     1801 ttgatgctgt cgatcgtcgt cgcgatcagc gagttgagcg tcgaaacatt cttgtccgaa
     1861 ccgatcatga ttgcctccga ttgatgtcgg agggagaacg cgctggccgt aaaatgggtg
     1921 cagcgaaata tggggcggcc ggcacaggcc gccccgtagt cggtcaggcc aggacggcct
     1981 tggccgggct acgacggcgg gccgccgcgc cgacgagacc gaagcccagg atcatcatcg
     2041 cccaggtcgc tgcttccggc acaatagtga aggtgaacgt gccctcgccg ccggtcagct
     2101 cgaagtcgag accgttcagc gtgaaaggaa ttgcgctgat gagtccgcca tcgaccgaaa
     2161 cgctattgcc cagaaacacc gcggtcgaaa aatcgagccc gaacgccgcg aacggggcgt
     2221 cattgacgcc gaggaggaat ccttccggga aggggagcag ctggagatcc ggcaaagcaa
     2281 agccggtgat gccgaccgca ggcgcatcga gcgtcacgtg cgtcagatcc acgagaggac
     2341 cggcgaagag cgaatccggg tcgatctggc tgttgacggt gaccgcggtg tcgaaatcga
     2401 atccgttcac cgagccggcg agcgtgccat cgtagctgaa ctggatgacc gtcgcctcgg
     2461 cggcagcggg cgccatcagc gcggcgaacg ccgcggtaag gcagaccata agctttttga
     2521 gcatcttaac cccctatttt tgaattgccg aaggctcata gtgcggccga tacgatgggt
     2581 ccacgccgtg cttgtcctcc caatcccaat tcgggacagg cccagcgagc cgagggtcga
     2641 atatattggt gcggagcgag cgagagatga cgagctatgt cgctctgttg cgggcggtga
     2701 atgtcggcgg gaccggcaag ctaccgatga ccgaactcaa ggccatgtgc gagaaagccg
     2761 gcttcgatcg agtccggacc tatatcgcca gcggcaacgc cgcgttcgcg gcggacggta
     2821 gcgaggccga ggtgaagacc gcgctcgaaa ccaggctgga ggcctatgcc ggcaagaagg
     2881 tcggcgtgct ggtgcgcacc gctgttgaga tagcggacgt gctaaccgcc aatccctatc
     2941 ccgatgttcc gcctgccaag gttctcgtga ttttcctcga cgaaccgccg gggcgtgacg
     3001 ccctcgccgt gaggcgacag acctccgaag aacttcggcc gggcaaacgc gaaatctaca
     3061 tccactatcc cgacgggatg ggccgatcgc aactcgtcgt gcccgcggcg aaagccggga
     3121 ccggacgcaa tatcaacact gtcaaagagc tggcgaggat ggcggcggaa atcagctgac
     3181 cggcaccccg aacaggtcgt gatcgtcggc ggcctccact agcaccggga cgatgtcgcc
     3241 gggcgcgagg ccgggggcgt cgcggaggag gacattgccg tcgatctcgg gcgcgtcggc
     3301 ctggctgcgg ccggtcgcgc cgccttcatc gtcgacttcg tcgataatga cggggagggt
     3361 gcggccgact ttcgcggcga gccgggccgc gctgatc
//
LOCUS       DASQVK010000326         4600 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_305190,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000326 DASQVK010000000
VERSION     DASQVK010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4600
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_305190"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..406)
                     /locus_tag="VE567_06970"
     CDS             complement(<1..406)
                     /locus_tag="VE567_06970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014076384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HYZ48617.1"
                     /translation="MKAFTNVRLPDGRAATVLIEGETIAAIGGGVPEGAEIIDGGGKL
                     LAPGIVDLGVFRVDGPAFRFGGIVRAALMPDQSPPLDDPGLIQRAAYSGKPDIWVHPL
                     AAATRGLNGAELAELGLMKVAGAKAVATGRHWI"
     gene            complement(403..1359)
                     /locus_tag="VE567_06975"
     CDS             complement(403..1359)
                     /locus_tag="VE567_06975"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015456887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HYZ48618.1"
                     /translation="MHDAHLFPHRHLLGIAGLQPHEISFLLDEAEQWVELNRATTKHD
                     DRLRGLTLINAFFENSTRTLLSFEIAGKRLGADVVNMHAAQSSVKKGETLIDTAMTLN
                     AMRADMLVIRHASSGAVRLIAGKVDCPVLNAGDGRHEHPTQALLDALTIRRRKGSVHG
                     LTVAICGDVLHSRVARSNILALTALGADVRVVGPPTLIPGAIEQMGVRVFTDMDAGLD
                     GADVVMMLRLQMERMTGGFVPSLREYHSFWGLTPERLARAKPDALVMHPGPMNRGVEI
                     ASSVADHPERSAITEQVEMGVAVRMACLDVLTRRRRGVEGWA"
     gene            1497..1811
                     /locus_tag="VE567_06980"
     CDS             1497..1811
                     /locus_tag="VE567_06980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011540672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HYZ48619.1"
                     /translation="MRKFMMALAIAGIAVPAIEAPASAEYRGYRHYHGRTYYAGDYRY
                     ACRRGNGTTGLIVGGALGALLGRAIDGGRDHTLGTVAGAAGGALLGREVQRSEQRRDC
                     YR"
     gene            1854..2117
                     /locus_tag="VE567_06985"
     CDS             1854..2117
                     /locus_tag="VE567_06985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007011725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper domain-containing protein"
                     /protein_id="HYZ48620.1"
                     /translation="MRRMIIAATIAASVMPVAATPADARQYRARTSYHHRCVRGHGTT
                     GLIIGGATGALVGSAVTHGAAGPIIGAAGGALLGRHIQRHRRC"
     gene            2133..2537
                     /locus_tag="VE567_06990"
     CDS             2133..2537
                     /locus_tag="VE567_06990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008065238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HYZ48621.1"
                     /translation="MRKLILAAAMAAVAAPTVPAFADPPSWAPAHGRRAKEAYYRGDE
                     HRGYDRGDYRGRDRDYYRGQYYAGPVWRGGDGRVYCRRSNGTTGLILGAGAGALLGRA
                     VDTRGERTTGTLLGAAAGALLGRQLDRNVRCR"
     gene            complement(2575..4599)
                     /locus_tag="VE567_06995"
     CDS             complement(2575..4599)
                     /locus_tag="VE567_06995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HYZ48622.1"
                     /translation="MPGRSETTRAIALVGPGGAGKTSLAEALLFCSGAIDRQGSVDHG
                     NCIGDSSPEARARRGSTELNLMHFEFLEDRFALIDTPGSVGFVGDGALGMAAADLAVV
                     VVDPEPARAQLAEPMLRQLEAMDMPHLIFVNKIDQARGRLRDLLEALQPLSSKPLLAR
                     HIPIWEGDRITGFVDVGLERAFHYVPGKPSERIEIPSELVDREIADRMHLLEQLADHD
                     DSLLEQLLMDETPDQQTVLNDLARETGEHLGVPVMFGSAQNGFGVRRLLKALRHEAPA
                     PKHAAVRLGAEDGCAFVFKVANGNQIGRLALARVFGGPLSEGAELKSANGTVRIGTLL
                     RMQGEKAAKVPRAEIGDVVAIAKAEGVQAGEWLTARGAPLSAPEVERPAANHVLAIAP
                     KNRNDDVKLSTALHKLTEEDAALAWEQDEVHHETLLKGMGDEHLNVVLARLKRRYGVD
                     VTSRPATIGYKESIRKTVTQRGRHKKQSGGHGQYGDCVIELKALPRGSGFVFEDKITG
                     GAIPRQYIPAVEAGIRDAMMKGPLGFPVVDVAVTLTDGSFHSVDSSELAFRTAGRIAM
                     SEALAAAQPYLLEPICKVTILTPNAATSRITSAISSRRGQMLGMEPRQGWHRWDRIEA
                     LIPEASLRGLDADLRSLSQGLATYAAEFDHLQEISGKLADEVVSKQLEAA"
BASE COUNT          712 a         1574 c         1555 g          759 t
ORIGIN      
        1 cgatccagtg tcgcccggtc gcgaccgcct tggcgcccgc cactttcatc aaaccaagct
       61 ccgccaattc ggcgccgttc agcccgcgcg tcgcggcggc aagcgggtgg acccagatgt
      121 cgggcttgcc cgaataggct gcgcgctgga tcaggcccgg atcgtcgaga ggcggggact
      181 ggtcgggcat cagggcggcg cgcacgatgc cgccgaagcg gaaggccggc ccgtcgacgc
      241 ggaacacacc cagatcgaca atgccgggcg caagcagctt gccgccgccg tcaatgatct
      301 cggcgccttc cgggacaccg ccgccgatcg ccgcgatcgt ctcgccttcg atcagcacag
      361 tcgccgcgcg cccgtctggc aggcggacat tggtgaaggc cttcatgccc agccctccac
      421 gccgcgacgc ctgcgcgtca gcacgtccag gcaagccatg cgcaccgcca cccccatttc
      481 cacctgctcg gtaatcgccg agcgctcggg atgatcggca acgctcgacg cgatctcgac
      541 gccccggttc atgggcccgg gatgcatgac gagcgcgtcc ggcttcgcgc gcgccagccg
      601 ctccggcgtc agcccccaaa agctgtgata ttcgcgcaag gaaggcacga agcccccggt
      661 catccgctcc atctgcagcc gcagcatcat caccacgtcc gcgccatcga gcccggcgtc
      721 catgtcggtg aagacgcgca cgcccatctg ctcgatcgcg ccggggatga gggtcggcgg
      781 gccgaccacc cgcacgtcgg cgccgagcgc tgtgagcgcg aggatgttcg agcgcgcgac
      841 ccggctgtgc agcacgtcgc cgcagatcgc gaccgtcagc ccgtggacgc ttcccttgcg
      901 ccgccggatg gtgagcgcgt cgagcagcgc ctgggtcgga tgctcgtgcc gcccgtcgcc
      961 ggcattgagc accgggcaat cgaccttgcc cgcgatcagc cggactgcgc ccgagctggc
     1021 gtggcggatg acgagcatgt cggcgcgcat cgcgttcagc gtcatcgccg tatcgatcag
     1081 cgtctcgcct ttcttcacgc tggactgggc cgcatgcatg ttgacaacgt ccgcgccgag
     1141 ccgtttgccg gcgatctcga aggagagaag cgtgcgcgtc gagttctcga aaaaggcatt
     1201 gatcagggtc aggccgcgca agcggtcgtc atgcttggtc gtcgcccggt tgagctccac
     1261 ccactgctcc gcctcgtcga gcaggaacga aatctcgtgc ggctgaaggc cggcaatccc
     1321 gagcaggtgc cggtgcggaa acaggtgggc gtcgtgcatt aaagccgcct cttaacgtcg
     1381 attccccgcc gcgtcaccgg gtcaccactc ctgctgcgcg atgaacgaag cgctcggaat
     1441 cggttcaggc gggctttggc attgtccgat tcgcaacgtc gcgagaggag gagacaatgc
     1501 gcaaattcat gatggccctg gccatcgcgg gcatcgcggt tccggcgatc gaagcgccgg
     1561 cctcggccga gtatagggga taccgccatt atcacggccg cacctattat gcgggcgatt
     1621 accgctacgc ctgccggcgc ggcaacggaa ccacgggtct gatcgttggc ggtgcgctgg
     1681 gcgcgctgct gggccgggcg attgacggcg ggcgcgacca tactcttggc accgtcgccg
     1741 gcgcggcggg cggcgcgctg ctgggccgcg aggtccagcg tagcgagcaa cgccgcgatt
     1801 gctaccgctg atgttgattg agcggggagg ggctgaatga ggaggataag ataatgcgta
     1861 gaatgatcat tgccgcaacg atcgcggcga gcgtgatgcc ggtggctgcg accccggccg
     1921 atgcgcgcca atatcgtgcg cggacgtcct atcaccaccg gtgcgtgcgc gggcacggca
     1981 ccacggggct gatcatcggc ggtgcaaccg gcgcgctcgt cggcagcgcc gtcacccatg
     2041 gcgcggccgg gccgatcatc ggggccgcgg gcggcgcgct gctgggccgt cacatccagc
     2101 gccaccgccg ctgctgatcg gagaaaagaa tgatgcgtaa attgatcttg gccgccgcga
     2161 tggcagccgt cgcggcgccc accgtaccgg cctttgccga tcccccttca tgggcaccgg
     2221 cgcacggccg ccgtgcgaaa gaagcctatt accggggcga tgagcatcgc ggctatgatc
     2281 gcggtgatta tcgcggtcgc gatcgcgact attatcgcgg tcaatattat gccgggccgg
     2341 tctggcgcgg cggcgacggc cgtgtctatt gccgccgctc caacgggacg accgggctga
     2401 ttctcggcgc gggtgcgggc gctttgctcg gccgcgccgt cgatacgcgc ggcgagcgga
     2461 cgacgggcac gctcctcggg gcggccgcgg gcgctctgct cggccgccag ctcgaccgta
     2521 acgtgaggtg ccgataggcc ggatcccctc ccgcgcacgc gggaggggaa ttcctcatgc
     2581 ggcctcgagc tgcttgctga ccacttcgtc cgccagcttg ccgctgattt cctgcagatg
     2641 atcgaactcg gccgcgtagg tggcgaggcc ctggcttagc gagcgcaggt ccgcatcgag
     2701 gccgcgcagc gacgcttcgg ggatcagcgc ctcgatccgg tcccagcggt gccacccctg
     2761 gcgcggctcc atgcccagca tctgcccgcg ccgcgacgag atcgccgaag tgatgcgcga
     2821 tgtggcggcg ttcggcgtca ggatcgttac tttgcagatc ggttcgagca gataaggctg
     2881 ggccgccgcc agcgcctcgc tcatcgcgat gcggccggcg gtgcggaagg cgagctcgga
     2941 gctgtccacc gaatggaagc tgccatcggt cagcgtcacc gcgacatcga cgacgggaaa
     3001 acccagcgga cccttcatca tcgcgtcgcg gatgcccgcc tcgacggcgg ggatatattg
     3061 ccgcggaatc gcgccgccgg tgatcttgtc ctcgaatacg aagccggagc cgcggggcag
     3121 ggccttaagc tcgatcacgc aatcgccata ttggccgtgc ccgccggatt gcttcttgtg
     3181 ccgcccgcgc tgggtcacgg tcttgcggat cgattccttg tagccgatcg tcgccggccg
     3241 cgaggtgaca tcgacgccat agcgccgctt cagccgcgcg agcacgacgt tcagatgctc
     3301 gtcgcccatg cctttcagca gcgtttcgtg atgcacttcg tcctgttccc aggcgagtgc
     3361 cgcatcctcc tcggtcagct tgtggagcgc ggtggaaagc ttcacatcgt cgttgcggtt
     3421 cttgggcgcg atcgcgagca cgtgattggc cgccggccgc tcgacctcag gggcggaaag
     3481 gggagcgccc cgggccgtca gccactcgcc ggcctgcacg ccttcggcct tggcgatcgc
     3541 gaccacgtcg ccgatctcgg cgcgggggac cttggccgcc ttctcgccct gcatgcggag
     3601 cagcgtgccg atccgcaccg tcccgttcgc gctcttgagc tcggcgcctt ccgagagtgg
     3661 gccgccgaac acccgcgcca gcgccagccg gccgatctgg ttgccgttcg cgaccttgaa
     3721 gacgaaagcg cagccgtcct ccgcgccgag ccgcaccgcg gcgtgcttgg gcgccggcgc
     3781 ttcgtgacgc agcgccttta gcagccgccg caccccgaag ccgttctgcg cggagccgaa
     3841 catcaccggc acgcccagat gctcgccggt ctcgcgcgcc aggtcattga gcaccgtctg
     3901 ctggtccggc gtctcgtcca tcagcaattg ttcgagcagc gaatcgtcgt ggtcggcgag
     3961 ctgctcgagc aggtgcatgc gatccgcgat ctcgcggtcc accagctcgg acgggatctc
     4021 gatccgctcg gagggcttgc cgggcacata gtgaaaggcg cgttcgagcc cgacatcgac
     4081 aaagccggtg atgcggtcgc cttcccagat cggaatgtgg cgtgcgagca gcggcttgct
     4141 ggagagcggc tgcagcgctt ccagcagatc gcgcagccgc ccgcgggcct ggtcgatctt
     4201 gttcacgaaa ataaggtgcg gcatgtccat ggcttcgagc tggcgcagca ttggttcggc
     4261 aagctgggcg cgggccggct cggggtcgac gaccactacc gccaggtccg cggcagccat
     4321 gccgagcgcg ccatcgccga cgaacccgac cgatcccggc gtgtcgatca gcgcgaacct
     4381 gtcttccaga aactcgaaat gcatcaggtt gagctcggtc gagccgcgcc gcgcccgtgc
     4441 ctcgggcgag gagtcgccga tgcaattgcc atggtcgacg ctgccctgcc ggtcgatcgc
     4501 gccactgcaa aaaagaaggg cctcggcaag gctggttttg ccagctccgc caggcccgac
     4561 gagcgcgatt gcgcgtgtgg tctctgatct tccgggcatg
//
LOCUS       DASQVK010000327         7140 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_116029,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000327 DASQVK010000000
VERSION     DASQVK010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 7140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7140
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116029"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..459
                     /locus_tag="VE567_07000"
     CDS             <1..459
                     /locus_tag="VE567_07000"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HYZ48623.1"
                     /translation="RELPGIALTALGSFIWACSSLIQRNLKGVPVLTIYAWIGLIGTL
                     VLAPVVLIFEPEGMRSIPHIPLKSFAWVAFSAIGSTLIGHGSMSWLLQRHPVASVTPL
                     TLASPVLSVLFASWFFRTPLTPIMILGGVVALTGVAIVTIRSAKAGEGRA"
     gene            516..1148
                     /locus_tag="VE567_07005"
     CDS             516..1148
                     /locus_tag="VE567_07005"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HYZ48624.1"
                     /translation="MIVLHYTGMQDAASAIQRLCDPEAKVSSHYLVTEDGKILRLVDE
                     GKRAWHAGRSYWRGITDVNSASVGIEIVNPGHEFGYRPFPDEQIGALIPLVADIKDRY
                     GITRGNIVGHSDIAPARKQDPGELFPWGQLARLRLALPRPAKNLMDPGWTDAGFLLAL
                     ERFGYDVADSLAAVVAFQRRFRPELIDGLIDGECRAILLALLLPRPQGDE"
     gene            complement(1156..2259)
                     /gene="ald"
                     /locus_tag="VE567_07010"
     CDS             complement(1156..2259)
                     /gene="ald"
                     /locus_tag="VE567_07010"
                     /EC_number="1.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010403040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000286 - alanine dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006522 - alanine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HYZ48625.1"
                     /translation="MRVGVPKEIKNHEYRVGLTPPSVAELVAAGHEVIVETKAGAGID
                     FDDQDYVEAGARIVGTAAEVFAQSDMIVKVKEPQPQEIALLEPRHLLFTYLHLAPDPE
                     QAKGLIKSGATCIAYETVTARDGSLPLLKPMSEVAGRMSVQVGAHYLEKEQGGRGVLL
                     GGVPGVAPAKVAILGGGVSGVNAAQMAVGMRADVTIYDINNARLAELDMFFSNQIKTA
                     FASKAAVAAAVRSAHLVIGAVLVPGAAAPKLVTREMVRTMKRGSVMVDIAIDQGGCFE
                     TSHPTTHQDPVFEVDGVIHYCVANMPGAVARTSAFALNNATLPFALKLANMGAEAAMR
                     ADQHLANGLNVMDGKIRHDAVAEALGLDYVPFA"
     gene            2398..2865
                     /locus_tag="VE567_07015"
     CDS             2398..2865
                     /locus_tag="VE567_07015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007012896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HYZ48626.1"
                     /translation="MDRIDRAILKALADDARATVSQVAEQVGLSQSACTRRIQTLEAS
                     GQIIGYGARLGHKRLGFHVTALVDITLSTQVEEDLARFERAVAEIDGVVECALISGAH
                     DYRLKIIAKDLDDYERLHREHLGRLPGVTTISSSFVLRSVPTRSEADALFGAG"
     gene            3023..4918
                     /locus_tag="VE567_07020"
     CDS             3023..4918
                     /locus_tag="VE567_07020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015456915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter Kup"
                     /protein_id="HYZ48627.1"
                     /translation="MPAEEISVHHHGHGQDSLLKLAVGAIGIVFGDIGTSPLYALKES
                     FIGHHPLTVDSLHIFGVISLMFWSLIMIVTVKYVFVIMRADNKGEGGSLALLALINRS
                     TPGKRWSSSIIMLGVFATALFYGDSIITPAISVLSAVEGLGVVDAHFDRFILPLSIAI
                     LVGLFLLQARGTERVGRLFGPVMLLYFAVIAVLGVVNLVQRPEVLAALSPHYIILFFA
                     HDPVLAFLALGSVVLAVTGAEALYADMGHFGRRPISIAWLYLVFPALILNYLGQASLL
                     MRSPEAVENPFFLLAPEQLRLPLVILATFATIIASQAVISGAFSVTQQAIQLGFIPRL
                     KIAHTSASTVGQIYIPVVNWALLVLVVLLVLTFRSSSNLASAYGIAVTGTMFITTCMM
                     AVLVFRVWSWNKLLGGLIIGTFLLIDGAYFTSNMTKIVDGGWFPLLVGLIAFTLLTTW
                     AKGRQLMMERLREAAMPISIFIDSAATSATRVPGTAVFMTYTPDGVPHALLHNLKHNK
                     VLHERVILLTVKIADVPYVEQPNRCQLEPLGHGFHRLVIKYGFMQEPDVPAALKQITG
                     CGPEIKMMDTSFFLARQTLLASSRPGMAIWREKLFAWMLRNAESAMEFFKLPTNRVVE
                     LGSQVEI"
     gene            complement(4965..5630)
                     /locus_tag="VE567_07025"
     CDS             complement(4965..5630)
                     /locus_tag="VE567_07025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013521170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HYZ48628.1"
                     /translation="MIDFYTAATPNGYKVAIMLEECGLDYTPHFLDLSAQDQKQPDFL
                     AINPNGRIPAIVDDGFPVFESGAILIWLAEKTGRFLPADPNGRSTVVQWVMWQMSGLG
                     PMMGQLNVFKRYFPEHIPAAIERYERESYRLFGVMDERLAHVPYLAGAEYSIADIACW
                     PWVRAYEWPGLTLDNHPRLKAWAGRIGERAAVKRGLQVPPRGEMTEAAQQAFVERARK
                     ILA"
     gene            5658..6158
                     /locus_tag="VE567_07030"
     CDS             5658..6158
                     /locus_tag="VE567_07030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010185976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2'-5' RNA ligase family protein"
                     /protein_id="HYZ48629.1"
                     /translation="MSAPIIVTALLGASDFAWADGLRRAHYPAERNQAPAHLTLFHHL
                     PPGIAAELREQLKAETRAKPPMARLAGLRHLGNGVAYRIDSPELEAIRERLADHFTGL
                     LTPADRAPWQPHITVQNKVEPKIAKALLIQLQAVFAARPLQIVGLASWWYRGGPWERL
                     SEHRFR"
     gene            complement(6155..>7140)
                     /locus_tag="VE567_07035"
     CDS             complement(6155..>7140)
                     /locus_tag="VE567_07035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003040196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYZ48630.1"
                     /translation="TVDPEAHEVGTDTGERIGYGRLIWAAGGRARMLRCPGADCADVY
                     GIRNRDDVDRLVARLGTAERIAVVGGGYIGLEAAAVLTKLGKRVSLFEALPRVLARVA
                     GERLSRFYEAEHKAHGVDLWLGAQVEAFELDAEGDRLAGVRMADQHMVAADLAIVGIG
                     IVPEVEPLIAAGANGTNGVDVDAQCRTSLADIFAIGDCAAHENRFAGGARLRLESVQN
                     ANDQAAVAAKTIMGEEVAYDAVPWFWSNQYDLRLQTVGLSIGHDDVVLRGDPAARSFS
                     VIYLKAGRVIALDCVKATKDYVQGRKLVEAGSEIDSLLLADTAKPLKELVA"
BASE COUNT         1159 a         2385 c         2224 g         1372 t
ORIGIN      
        1 cgcgagctgc ccggcatcgc gctcaccgcg ctcggcagct tcatctgggc ctgctcttcg
       61 ctcatccagc gcaacctgaa gggcgtgccg gtgcttacca tatatgcctg gatcgggctg
      121 atcgggacgc tcgtcctggc acccgtcgtg ctgatcttcg agcctgaagg catgcggtcg
      181 atcccgcata tcccccttaa aagcttcgcc tgggtcgcct tttccgcgat cggctcgacc
      241 ctgatcggtc atggttcgat gtcgtggctg ctgcagcggc atccggtggc gtcggtcacc
      301 ccgctgacgc tcgcttcgcc agtgctttcg gtcctgttcg cctcctggtt tttccgcact
      361 cccttgacgc cgatcatgat tttgggcggg gtcgtggcgc tgaccggggt cgcgatcgtg
      421 acgatcaggt cggcaaaggc aggggagggc cgcgcttgac cgagatcatc gagacgccgt
      481 cgcccaattt cgacgagcgc agcagcgcgg tgtcgatgat cgtgctccat tataccggga
      541 tgcaggacgc cgcctctgcc atccagcggc tgtgcgatcc ggaggccaag gtctcgtcgc
      601 attatctggt gacggaggac ggcaagatcc tccggctggt cgacgagggc aagcgcgcct
      661 ggcacgcagg ccgctcatat tggcgcggca ttacggacgt gaactcggcg agcgtgggga
      721 tcgagatcgt caatcccggc catgaattcg gctaccggcc ctttccggac gagcagatcg
      781 gggcgctgat cccgctcgtc gccgacatca aggaccggta cggcatcacg cggggcaata
      841 tcgtcggtca ttccgacatt gcaccagccc gcaagcagga tccgggcgag ctgtttccct
      901 gggggcagct cgcccgtctg cgcctggccc tgccgcggcc ggccaagaac ctgatggatc
      961 cgggctggac cgatgccggc ttcctgctgg cgctggagcg gttcggctac gatgtcgccg
     1021 actcgctcgc ggcggtcgtg gcgttccagc gccgcttccg ccccgaactg atcgacgggc
     1081 tcattgacgg cgaatgccgc gcgatcctcc tcgccttgct gctccccagg cctcagggcg
     1141 acgagtgagc tgagctcagg cgaagggcac gtaatccagc ccaagcgctt cagcgactgc
     1201 gtcgtggcgg atcttgccgt ccatgacgtt gagcccgttg gcgaggtgct ggtcggcccg
     1261 catcgccgct tccgcgccca tgttcgccag cttgagcgcg aacggaagcg tcgcgttgtt
     1321 aagggcgaag gccgaagtgc gggcgaccgc gcccggcatg ttggcgacgc aatagtgaat
     1381 gacgccgtcc acctcgaaca ccgggtcctg gtgcgtggtc gggtgcgagg tctcgaagca
     1441 gcctccctgg tcgatcgcga tgtcgaccat gaccgagccg cgcttcatcg tcctgaccat
     1501 ctcgcgcgtg acgagcttgg gcgcggctgc acccggcacc agcaccgcgc cgatcaccag
     1561 atgcgcgctc cgcactgcag cggcgactgc cgctttggag gcgaacgccg tcttgatctg
     1621 gttcgaaaag aacatgtcga gctcggcgag ccgggcattg ttgatgtcgt atatggtgac
     1681 gtccgcacgc atgccgacag ccatctgcgc ggcgttcacg ccggagacgc cgccgcccag
     1741 gatcgcgacc ttcgccggcg cgacgccggg cacgccgccc agcagcacac cgcgcccgcc
     1801 ctgttccttt tccagatagt gcgcgccgac ctgcaccgac atgcggcccg cgacttctga
     1861 catcggcttg aggagcggca gcgagccgtc ccgggcggtg accgtctcat aggcgatgca
     1921 ggtcgcgccg gacttgatca gccccttggc ctgctccgga tcgggcgcga ggtgaagata
     1981 ggtgaagagc agatgccgtg gctccagcag cgcgatttct tgcggctgcg gctctttcac
     2041 tttcacgatc atgtcgctct gggcgaacac ttcggcggcg gtgccgacga tccgcgcgcc
     2101 cgcctcgaca tagtcctggt cgtcgaaatc gatgccggcg ccagccttgg tctccacgat
     2161 cacttcatgg ccggcggcga ccaattcggc caccgaaggc ggggtcagtc cgacgcgata
     2221 ttcgtgattc ttgatctctt tgggcacgcc gacgcgcatg atcgctctcc tgatgatccg
     2281 ggtgcggcgt catactccga ttcggtatcg caaatccctg caaaaagcag tggtgcaaaa
     2341 gagcgttcac gcatagaaat cacgtgtttt tggttgaatt gaaggaaatc gtgcagaatg
     2401 gaccggatcg accgtgccat cctgaaagcg cttgcggacg acgcgcgggc gacggtcagc
     2461 caggtggcgg agcaagtggg gctttcgcaa tcggcgtgca cgcgccgcat ccagacgctg
     2521 gaggcctcgg gtcagatcat cggctacggc gccagacttg gtcacaagcg gctcggcttt
     2581 cacgtgaccg ccctggtcga catcaccctc tcgactcaag tggaggaaga ccttgcccgc
     2641 ttcgaacgcg ctgtggcgga gatcgacggc gtggtcgaat gcgcgctgat ttcgggcgcg
     2701 catgattatc ggttgaagat catcgccaag gacctcgacg attatgagcg gctccaccgc
     2761 gagcatctcg gccggctgcc cggcgtgacg acgatcagca gcagcttcgt gctacgctcc
     2821 gttcccacgc gcagcgaggc cgatgcattg ttcggggccg gttgacccca tattgcagcc
     2881 cttccggtcc cgtgataggg cgcgccgccg tccagagggg gcgaaggacg catttgttcg
     2941 ttatgcgcat catgccaaat tccttgagat atacccgccc gtgagcaccg ggatttcgga
     3001 cacggcgacg gtttcgagcg ccgtgccggc cgaggaaatc tcggtccatc accacggcca
     3061 tgggcaagac agcctgctga agcttgccgt cggagcgatc ggcatcgtct tcggcgatat
     3121 cggcaccagc ccgctctacg cgctcaagga atcgttcatc ggccaccatc cgctgaccgt
     3181 cgactcgctg cacatctttg gcgtgatcag cctgatgttc tggtcgctga tcatgatcgt
     3241 gaccgtcaaa tatgttttcg tcatcatgcg cgccgacaac aaaggggagg gcggcagtct
     3301 tgctttgctc gcgctcatca accgcagcac gcccggcaag cgctggtcgt cgagcatcat
     3361 catgctgggc gtgtttgcga ccgcgctttt ctacggcgac agcatcatca ctccggcgat
     3421 ctccgttctt tcggcggtgg aaggcctggg cgtcgtcgat gcgcatttcg accggttcat
     3481 cctgccgctg tcgatcgcaa tcctggtggg gctattcctg ttgcaagccc gcggcacgga
     3541 acgggttggc cgcctgttcg ggccggtgat gctgctctac ttcgcggtga ttgcggtgtt
     3601 gggcgtcgtc aatctcgtcc agcggccgga agtgctagcg gcacttagcc cgcattacat
     3661 catcctattc ttcgcgcatg atccggtgct ggcgttcctg gcgcttggtt cggtcgtgct
     3721 ggcggtcacg ggcgcggagg cgctctatgc cgatatgggc catttcgggc ggcggccgat
     3781 ctcgatcgcc tggctctacc tcgtcttccc ggcgctgatc ctcaactatc tcggccaggc
     3841 ctcgttgctg atgcgctcgc cggaggccgt cgaaaatccc ttcttcctgc tcgcgcccga
     3901 gcagctgcgc ctgccgcttg tcatcctggc gacgttcgcg accatcatcg caagccaggc
     3961 ggtgatttcc ggcgcatttt cggtgacgca gcaggcaatc cagcttggct ttatcccgcg
     4021 cctgaagatc gcccatacca gcgcatccac tgtcgggcag atctatatcc cggtggtgaa
     4081 ctgggcgctg ctcgtgctgg tcgtgctgct ggtgctgacc ttccgcagct cgtcgaacct
     4141 cgcctcggcc tatggcatcg ccgtgaccgg cacgatgttc atcacgacct gcatgatggc
     4201 ggtgctggtc ttccgcgtgt ggagctggaa caagctgctc ggcggcctca tcatcggcac
     4261 gttcctgctg atcgacggcg cctatttcac ctcgaacatg acgaagatcg tcgatggcgg
     4321 ctggttcccg ctgctggtcg gcctgatcgc cttcactttg ctcacgacgt gggcaaaggg
     4381 ccgccagctg atgatggagc ggctgcgcga ggcggcgatg ccgatctcga tcttcatcga
     4441 ctcggctgcc acctcggcga cccgcgtgcc cggcactgcc gtgttcatga cctatacgcc
     4501 cgacggcgtg ccgcatgcgc tgctccacaa cctgaagcac aacaaggtgc tgcacgagcg
     4561 ggtgatcctg ctgaccgtga agatcgccga tgtgccctat gtggagcagc cgaatcgctg
     4621 ccagctcgag ccgctggggc acggtttcca ccgtctggtc atcaagtatg gcttcatgca
     4681 ggagccggac gtgccggcgg cgctgaagca gatcaccggc tgtggacccg agatcaagat
     4741 gatggacacg agcttctttc tcgcccgcca gaccctgctc gcctcgtcgc ggccgggcat
     4801 ggcgatctgg cgcgaaaagc tcttcgcctg gatgctgcgg aacgctgaaa gcgcgatgga
     4861 attcttcaag ctgccgacca accgggttgt ggagctcggc agccaggtgg agatctgacg
     4921 aggaacagcg ctcctcgtca tcctgaccaa gtccggcgcg acgattaggc caatatcttc
     4981 cgcgctcgtt ccacgaacgc ttgttgcgcg gcttccgtca tctcgccccg cggcggaacc
     5041 tgaaggcccc gcttcaccgc cgcgcgctcc ccgatccgtc ccgcccaggc tttcagcctc
     5101 gggtgattgt cgagggtaag ccccggccat tcataggccc gcacccaggg ccagcaggca
     5161 atgtcggcga tgctgtactc ggcgcccgcg agatatggaa cgtgcgccag ccgctcgtcc
     5221 attaccccga acagccggta gctctcgcgc tcatagcgtt cgatcgcggc ggggatgtgc
     5281 tcggggaaat agcgcttgaa gacgttgagc tgccccatca tcgggccaag cccgctcatc
     5341 tgccacatca cccactggac gaccgtgctg cggccattcg ggtcggcagg caaaaaacgg
     5401 ccggttttct cggccagcca aatcaggatc gcgcccgact cgaacaccgg aaagccgtcg
     5461 tcgacgatcg ccggaatgcg cccattgggg ttgatcgcca gaaagtcggg ctgcttctgg
     5521 tcctgggcgg agagatccag gaaatgcggc gtgtagtcga gcccgcattc ctccagcatg
     5581 atcgcgacct tgtagccgtt cggcgtggcg gcggtataga agtcgatcat ccggctttcc
     5641 tctcgcaaag gctttgcgtg tccgcaccga tcatcgtcac ggccttgctt ggcgcaagcg
     5701 atttcgcctg ggcggacggg ttgcgacgtg cccattatcc ggcggaacgg aaccaggcgc
     5761 ccgcccacct caccctgttt caccatttgc ccccgggcat tgcggctgaa ctacgcgagc
     5821 agctgaaggc cgagacgcgc gccaagccac ccatggcgcg gctggctggc ctgcgccatc
     5881 tgggcaacgg cgtcgcctat cggatcgaca gccccgagct cgaagcaatt cgcgagcggc
     5941 tggccgacca tttcaccggg ctgctcacgc ccgcggaccg ggccccttgg caaccgcaca
     6001 tcacggtcca gaacaaggtc gagcctaaaa tcgccaaggc gctgctcatc cagctgcagg
     6061 cagttttcgc agcgcgcccg ctccagatcg tcggcctggc gagctggtgg tatcgcggcg
     6121 gcccgtggga acggctcagc gagcaccggt tccgctaggc gaccagctcc ttcagcggct
     6181 tcgccgtatc cgccagcagc agcgaatcga tctccgaccc ggcctcgacc agcttgcggc
     6241 cctgtacgta atccttggtt gctttgacgc agtcgagcgc aatcacccgg ccggccttta
     6301 ggtagatgac cgaaaaactc cgcgccgccg gatcgccgcg taacactaca tcgtcatggc
     6361 cgatcgacag gccaacggtc tgcagtcgca gatcatattg gttcgaccag aaccagggca
     6421 cggcgtcata ggccacctct tcgcccatga tcgttttcgc ggccaccgcc gcctgatcgt
     6481 tcgcgttctg caccgattcg agccgcaggc gcgcgccgcc ggcgaacctg ttctcgtgcg
     6541 ctgcgcagtc gccgattgcg aagatgtcag ccaggctcgt gcgacactgc gcatcgacat
     6601 cgacgccgtt cgtgccgttg gcgccggccg cgatcagggg ctcgacctcg ggcacgatgc
     6661 cgatgccgac gatcgccagg tccgctgcca ccatatgctg gtccgccatg cgcacgccgg
     6721 cgagccggtc gccttcggcg tcgagttcga acgcttcaac ttgcgcgccc agccacagat
     6781 cgacgccatg cgccttgtgc tcggcttcgt agaagcgcga cagccgttcg ccggcgacgc
     6841 gcgccagcac gcgcggcagc gcctcgaaca ggctgactcg cttgccgagc ttcgtcagca
     6901 ccgccgccgc ttcaagcccg atatagccgc cgcccaccac cgcgatccgc tcggccgtac
     6961 ccagccttgc caccagccgg tccacatcgt cgcggttgcg gatgccgtac acgtcagcac
     7021 agtctgcgcc ggggcagcgg agcattcgcg cccggccgcc tgctgcccag atcagcctgc
     7081 catagccgat cctctcgccc gtgtcggttc cgacttcatg cgcctcggga tcgacggtca
//
LOCUS       DASQVK010000328         3467 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_84324, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000328 DASQVK010000000
VERSION     DASQVK010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3467)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3467)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3467
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84324"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..209)
                     /locus_tag="VE567_07040"
     CDS             complement(<1..209)
                     /locus_tag="VE567_07040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48631.1"
                     /translation="MLSLSLWLRLAAAGLLIAAADPATAQVRTADTASLTARPDGAEV
                     NRGAVRMRVTALTHSILRVRIARDGR"
     gene            complement(223..1287)
                     /locus_tag="VE567_07045"
     CDS             complement(223..1287)
                     /locus_tag="VE567_07045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cupin-like domain-containing protein"
                     /protein_id="HYZ48632.1"
                     /translation="MKAAPALLPEAAAAPLDHLPSVASASAGSRMEIETLALAGEPVV
                     LKGLVDAWPAVAAGRRSPAALNAYLKVLDQGAPVPVMEAPAASGGKFGYGPDLREFSF
                     SKRQRPLGETLDRIERNAGTPGAPIVAIQMLPLAERLPAFPRHNPMPWLTPDAAPRLW
                     LGGPVRTQTHNDPDHNLACVLAGRRRFLLFPPDQVANLYIGPPDRPPPLSLVDPEAPD
                     FDRFPRFAEALAAARVAELGPGDALLLPKYWWHHVTSRDPYNAMVNYWWGSAPRGVDN
                     ARDCFLAALLAIRSLPSSERRYWRAMFENHVFDETGEGVAHIPAALRAYLGDMPPHER
                     AALKRELEQAILNPFASRRP"
     gene            complement(1284..2762)
                     /locus_tag="VE567_07050"
     CDS             complement(1284..2762)
                     /locus_tag="VE567_07050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan 7-halogenase"
                     /protein_id="HYZ48633.1"
                     /translation="MMSPPQRVTIVGRDAALWLTATALQRALAPTGVAVVAVELPTAL
                     SAASIHVSLPPLEALHAKLGLEESALLDATGGSFSLGYNVVGPAGTAPFFLAHGSYGA
                     PIDGSDFFHYWNKAQHYGLGVALEHFSLTAMAARQGRMMLPDAATSVFGRTDYGYHLP
                     ALAYAAALKTYACGSGLVLHQARNLHVERDSFSGAIRAVRLDDGSRIESDLFVDATGA
                     DRLLIGPGRPGHCDAADRRLIARAPAFTSIAPYSELRIGETGWAALHATPAATYVVHI
                     FSAAEQSDEEALAAASRLSGLALADAVVAPAPSGASEATWAGNCIAIGASARAFDPLF
                     DCDLHVIQLGIVHLLSLFPATADFAAERAEYNRITTSAFDRLADLASAFYAANRFHGV
                     FWDRTGAAAAPEPVALKLATFRARGEIPPMEDETFAPDFWRAMLVGLGERAESWPPAI
                     DRTPPERMKQEFRRMLAFVRDKVLEQPTHDSCLSGLGRSRAA"
     gene            complement(2759..>3467)
                     /locus_tag="VE567_07055"
     CDS             complement(2759..>3467)
                     /locus_tag="VE567_07055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tryptophan 7-halogenase"
                     /protein_id="HYZ48634.1"
                     /translation="LQHRIGNGYIFSSSFLSEDEARQTLLANLDGAPQAEPRLLRFMP
                     GRRVDAWRGNCVAVGLASGFLEPLESTSIYLIQAAVIDLINLIPPPKAGRRTDPRLAN
                     EFNRLNAMQYERVRDFLILHYIANRREDEPFWDALRTTRLPDTLAHKLDLFRGRGTVP
                     NYQYGLFARDSWLSVLVGQGIRPRAYDRLAEGFDLDRVAARLEDFRGRIASAVSAMPS
                     HATFLRGYCGGAQELPS"
BASE COUNT          616 a         1139 c         1204 g          508 t
ORIGIN      
        1 cggccatcgc gcgcgatccg cacgcgcaga atcgaatgcg tgagcgctgt gacgcgcatc
       61 cgcaccgcgc cgcgattgac ctcggcgccg tcggggcgcg ccgtcaggct cgcggtgtcc
      121 gcggtgcgga cctgggcagt cgcggggtcc gccgccgcga tcaagagtcc ggcagcggca
      181 aggcggagcc aaaggctcaa ggacaacata ggggctccgg ggttaggggc gtctggacgc
      241 gaatgggttg aggatcgcct gctcaagctc gcgcttcagc gcggcgcgct catggggagg
      301 catgtcgccg agataggcac gtaaggccgc cgggatatgg gcaactccct cccccgtctc
      361 gtcgaacaca tggttttcga acatggcccg ccagtagcgg cgctcggagg aaggcagcga
      421 tcggatcgcg agcaaggcgg caaggaagca gtcgcgcgca ttgtcgacgc cccgcggcgc
      481 gcttccccac cagtaattga ccatcgcgtt ataggggtcg cgcgaggtga catggtgcca
      541 ccaatatttg ggcagcagca aggcgtcgcc cggccccagc tccgccacgc gcgcggcagc
      601 gagcgcttcg gcgaagcgcg gaaagcgatc gaaatcgggc gcctcgggat cgacgagcga
      661 gagcggcggc ggccggtctg gcgggccgat atagaggttg gcgacctgat cgggcgggaa
      721 aagcaggaag cggcgccgtc ccgccagcac gcaggcgaga ttatggtcgg gatcgttgtg
      781 ggtctgcgtc ctgaccggtc cgcccagcca caggcgcggc gcggcgtccg gggtcagcca
      841 cggcatcgga ttgtggcgcg ggaaggcggg caggcgctca gcaagcggca gcatctggat
      901 cgcgacgatg ggcgcgccgg gcgtgccggc attccgttcg atccggtcga gcgtctcgcc
      961 aagcggccgc tgccgcttgc tgaagctgaa ctcgcgcagg tccgggccgt agccaaactt
     1021 gcctccgctc gcagccggcg cttccatgac tggcacgggc gccccttggt ccagcacctt
     1081 tagataggcg ttcagcgccg ccggtgagcg ccgtcccgcg gcaacagccg gccaggcatc
     1141 gaccaggcct ttgagcacga ccggttcgcc ggccagggcc aatgtctcga tctccatccg
     1201 cgagccggcg ctggcggagg cgaccgacgg caagtggtcg agcggggcgg cagcggcctc
     1261 cggcagaagg gcgggcgcgg ccttcacgcc gcccggctcc ggcccaggcc gctcaagcag
     1321 gaatcgtgcg tcggctgctc aagcaccttg tcgcggacaa aggcgagcat ccgccggaac
     1381 tcctgcttca tccgttcggg cggcgtacgg tcgatcgccg gcggccagct ttcggcccgt
     1441 tcgccaagac cgaccagcat ggcgcgccag aaatcgggcg cgaacgtctc atcctccatc
     1501 ggcgggatct cgccacgcgc acggaacgtg gcgagcttga gcgcgaccgg ctccggcgcc
     1561 gctgcggcgc ctgttcgatc ccagaatacc ccatggaagc gattggcggc ataaaaggcg
     1621 ctggcgagat cggcgaggcg atcgaacgcg gaagtggtga tgcggttata ttccgcgcgc
     1681 tcggcagcga aatcggccgt agccggaaac agcgacagca agtgaacgat gccgagctga
     1741 atgacgtgca gatcgcagtc gaacaaagga tcgaacgcgc gcgcggaagc gccaatggct
     1801 atgcaattgc ccgcccatgt cgcctcgctc gctccggacg gcgccggcgc gacgaccgca
     1861 tcggcaagcg ccagccccga aaggcgcgag gcggccgcga gcgcttcctc gtcgctttgc
     1921 tccgccgcgg aaaagatatg gacgacataa gtggccgcgg gagtggcgtg cagcgccgcc
     1981 catcccgtct ccccgatcct gagctcggaa taaggcgcga tcgacgtgaa cgccggcgcc
     2041 cgcgcaatca ggcggcgatc cgctgcgtcg caatggcctg gccgtccagg gcctatgagc
     2101 agccggtccg cgccggtggc atcgacgaaa aggtcgcttt cgatgcggga gccgtcgtcc
     2161 agcctcacgg cccgtatcgc accgctgaat gagtcccgct cgacgtgcag gttgcgcgcc
     2221 tggtgcagaa ccagccccga tccgcaggca taggttttaa gcgcagcggc ataagccaga
     2281 gccggcagat ggtagccata gtcggtgcgg ccgaaaaccg acgtcgccgc atcgggcagc
     2341 atcattcggc cttgccgcgc ggccatggcc gtcaggctga aatgctcaag cgccactccc
     2401 agcccgtaat gttgggcctt gttccaatag tgaaagaagt cgctgccatc gatcggtgcg
     2461 ccgtaagaac cgtgcgcgag gaagaaaggc gccgtccccg ccggaccgac gacattgtag
     2521 ccgagcgaga agctgccgcc cgtggcatcg agcagcgccg attcctcgag ccctagcttg
     2581 gcgtgcagcg cctcaagcgg cggcagcgag acatggatcg aagcggcgct gagcgcagtc
     2641 ggcagctcga ccgcgacgac cgcaacgccg gtcggcgcca gcgcacgctg gagcgcggtt
     2701 gcggtcagcc ataaggcggc gtctcgccca acgatcgtca cccgctgcgg cggcgacatc
     2761 atgacggcag ttcctgcgcg ccgccgcaat agccgcgcag aaacgtggcg tggctcggca
     2821 tggctgatac ggctgaggcg atccgccccc ggaaatcctc cagccgagcg gcaacccggt
     2881 ccagatcgaa accctccgcc aatcggtcgt aagcccgggg tcgaatcccc tgccccacca
     2941 gaacggacag ccagctgtcg cgcgcgaaca gcccatattg gtagttcgga accgtgccgc
     3001 ggccccggaa cagatccagc ttgtgcgcca gcgtgtcggg cagcctggtg gtgcgcagcg
     3061 cgtcccagaa gggttcgtct tcgcgccgat tggcgatgta gtgcaggatc aggaaatccc
     3121 gcacccgttc atattgcatc gcattgagcc ggttgaactc gttggcgagg cgcggatcgg
     3181 tacggcggcc cgcttttggc ggggggatca ggttgatgag atcgatcacc gccgcctgga
     3241 tcagatagat gctggtcgat tccagcggct cgagaaaccc gctggcgagt ccgaccgcga
     3301 cgcaattgcc gcgccaggca tcgacccgtc ttcccggcat gaagcgcagc aggcgcggct
     3361 cggcctgtgg cgcgccgtcg agattggcga gcaacgtctg gcgtgcttcg tcttccgaca
     3421 gaaagctgct ggagaagatg tagccattgc cgatgcgatg ctggagc
//
LOCUS       DASQVK010000329         3379 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_400428,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000329 DASQVK010000000
VERSION     DASQVK010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3379
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_400428"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..771
                     /locus_tag="VE567_07060"
     CDS             <1..771
                     /locus_tag="VE567_07060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006958198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HYZ48635.1"
                     /translation="PFRDQVVIATKFGFLGGVPTKGVDSRPENIRAVADAALKRLRTD
                     RIDLFYQHRVDPAVPIEDVAGTVGELIRQGKVKHFGLSEAGVETIRRAHAVQPVTALQ
                     SEYSLWWREPEKEVLPALEELGIGFVPFSPLGRGFLTGAIGADTRFEQGDFRNTLPRF
                     SPEARAANQALVDRIGAIAAAKNATPAQIALAWLLAQKPWIVPIPGTTKLHRLEENLG
                     AAHIALTPDDLRQIGEALADIEVQGERYPPQFQATVSR"
     gene            812..1864
                     /locus_tag="VE567_07065"
     CDS             812..1864
                     /locus_tag="VE567_07065"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HYZ48636.1"
                     /translation="MKTHAYGNEAADRPLHPLTIERREPSPRDVAIDILFCGVCHSDL
                     HTARGEWNGTLYPCVPGHEIVGRVSAVGGDVTRFREGDIVGVGCMVDSCRTCPSCHAG
                     EEQYCTGTGLVGTYNSKDRHLGGHTFGGYSKHIVVDEDFVLRIGHDEKDLAAVAPLLC
                     AGITTYSPLRHWKVGPGQEVGVVGLGGLGHMGVKLAAAMGARVTVFTTSPDKREDALK
                     LGAHDVIVSRDPEQMAAAEGRFDFILNTVAARLDLDPYLAALKRDGTMVLVGVPAEPH
                     KSPEVGKLVFARRSLAGSLIGGIRETQEMLDFCQQHGITSDIEMIRMDEIDQAYDRMV
                     RSDVKYRFVIDMATLG"
     gene            2032..2970
                     /gene="dmeF"
                     /locus_tag="VE567_07070"
     CDS             2032..2970
                     /gene="dmeF"
                     /locus_tag="VE567_07070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018251375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family Co(II)/Ni(II) efflux transporter
                     DmeF"
                     /protein_id="HYZ48637.1"
                     /translation="MSEAQFIHDYLGAHHDRHGQRMRWVVALNAAMMVGEIAAGYATG
                     SMALLADGFHMATHAGALGVAALAYGYARRHARNPRFSFGTGKVGDLAGFASALFLAI
                     VAIGIAGESVARLVQPAHIDFGNAGLVAAIGLLVNLASAALLSGGHHHHDHGHGHGHG
                     HGHGHGHHHDHDHDHHHDNNFRAAYLHVLADALTSVLAIAALVAGRYLGWSWLDPVVG
                     IVGALVIAQWSLSLMKETSAVLLDTTDAQVAEQVRTVVGELDASILDLHVWRVGPGAL
                     AVIVDVAEPASPCAIRERLRGLKGVVHMTVQTHPGS"
     gene            3030..>3379
                     /locus_tag="VE567_07075"
     CDS             3030..>3379
                     /locus_tag="VE567_07075"
                     /inference="COORDINATES: protein motif:HMM:NF013703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HYZ48638.1"
                     /translation="MHGSTSPKARPWLNEAAATAWLAGPLILTNLAQSAINATDVVLL
                     GRLGANELAASSIGVNLYIAFLIFGMGLVMAASPILAKQLGRQKHSLREVRRTVRQAI
                     WAAMTISVPVWAIL"
BASE COUNT          550 a         1122 c         1112 g          595 t
ORIGIN      
        1 ccctttcgcg accaggtggt gatcgccacc aaattcggct ttctgggcgg cgtgccgacc
       61 aagggcgtcg acagccggcc ggagaatatc cgcgcggtgg ccgacgccgc gctcaagcgg
      121 ctgcgcacgg atcgcatcga ccttttctac cagcaccgcg tcgatccggc cgtgccgatc
      181 gaggacgtgg ccggcacggt cggggagctg atccggcaag gcaaggtcaa gcatttcggc
      241 ctctccgagg cgggagtgga gaccatccgc cgcgctcatg ccgtgcagcc agtgacggcg
      301 ctgcagagcg aatattcgct ctggtggcgc gagcccgaga aggaggtgct gccggcgctc
      361 gaggagctcg gcatcggctt cgtgccgttc agcccgctcg gccgcggttt tctgaccggc
      421 gcgatcggcg ccgacacccg tttcgaacaa ggcgatttcc gcaacaccct gccccgcttc
      481 tcccccgagg cgcgcgccgc gaatcaggct ttggtcgacc ggattggcgc gatcgcggcg
      541 gcaaagaatg caacgccggc gcagatcgcg ttggcctggc tgctcgcgca aaaaccctgg
      601 atcgtgccga tccccggcac gaccaagctg caccggctcg aggagaatct cggcgcggcg
      661 catattgcgc tcacccccga cgatctccgg cagatcggcg aagcgctggc cgacatcgag
      721 gttcagggcg aacggtatcc gccgcaattc caggcgacgg tcagccgctg agcgccgcca
      781 gtttcgattt ctttcacccc gaggaccagc aatgaaaacg cacgcttatg gcaatgaggc
      841 agccgacagg ccgctccatc cgctgacgat cgagcgccgc gagcccagcc cgcgcgacgt
      901 cgcgatcgac attctcttct gcggcgtctg ccattccgac ctgcacaccg cgcgcggcga
      961 atggaacggc actctttacc cctgcgtgcc cggccacgag atcgtcggcc gcgtaagcgc
     1021 agtcggcggc gacgtcaccc gttttcggga aggcgatatc gtcggcgtcg gttgcatggt
     1081 ggatagctgc cgcacctgtc cctcatgcca tgccggcgag gagcaatatt gcaccggcac
     1141 gggccttgtc ggcacctata acagcaagga ccggcatcta ggcggccaca ccttcggcgg
     1201 ctattcgaaa catatcgtcg tggacgagga tttcgtgctg cgcatcggcc atgacgagaa
     1261 ggatctagcc gccgtcgcgc cgcttctttg cgccggcatc accacctatt cgccgctccg
     1321 ccactggaaa gtggggccgg ggcaggaagt cggtgtcgtg ggcctgggcg gccttggcca
     1381 tatgggcgtc aagctcgccg ccgcgatggg tgcgcgtgtg accgtcttca ccacctcgcc
     1441 cgacaaacgc gaggacgcgc tgaaactcgg cgcgcacgac gtgatcgtct cgcgcgaccc
     1501 cgagcagatg gcagccgcgg aaggtcggtt cgacttcatc ctgaacacgg ttgccgcacg
     1561 gctcgacctc gatccatatc tcgccgcgct gaagcgcgac ggcacgatgg tgctggtcgg
     1621 cgttccggcc gagccgcaca aatcgcccga agtcggcaag ctggtctttg cccgccgatc
     1681 gctggccggc tcgctgatcg gcggcatccg cgagacgcag gaaatgctcg atttctgcca
     1741 gcaacacggc atcacgtcag acatcgagat gatccggatg gacgagatcg accaggccta
     1801 tgaccggatg gtgcgcagcg acgtgaaata tcgcttcgtg atcgacatgg cgacgctcgg
     1861 ctgatcagga cttcacggcc gggatcgcgc ccgccgccac gcggtggtgc tcgacccggt
     1921 cggtgcgttc gagcaggtag cgatcgcctt ccgggatgag gcgaggccag catcggcccg
     1981 ccttatcgca gcgcctcgac aacggtgtcc gagatgcgca aatagccgac catgagcgaa
     2041 gcgcagttta ttcacgatta cctgggcgcc catcacgacc gccatgggca gcgcatgcgc
     2101 tgggtggttg cgctgaatgc ggcgatgatg gtcggcgaaa ttgccgcggg ctacgccacc
     2161 ggatcgatgg cgctgctggc cgacggcttt cacatggcga cgcatgccgg cgctctgggc
     2221 gtggccgcgc tcgcttatgg ctatgcccgg cgacatgcgc gcaacccgcg cttcagcttc
     2281 ggcaccggca aggtcggcga tctggccggc ttcgcctcgg cgctgttcct cgccatcgtc
     2341 gcgatcggga tcgccggcga atctgtggcc cggctggtcc agccggccca tatcgacttc
     2401 ggcaacgctg gcctggtcgc ggcgatcggc ctgctggtca atctcgcgag cgcagcgctg
     2461 ctttccggcg ggcaccacca ccacgatcac ggtcacggtc acggtcatgg gcacggtcat
     2521 gggcacggcc accatcatga tcatgaccat gaccatcatc acgacaataa tttccgggcg
     2581 gcctatctcc atgtgctggc cgacgcgctg acctccgtgc tggcgatcgc ggcgctggtt
     2641 gccgggcgct atctcggctg gtcctggctc gatccggtcg tcggcatcgt cggcgcgttg
     2701 gtgattgctc aatggtcgtt gtcgctgatg aaggagactt cggcggtttt gctcgacacg
     2761 accgatgcgc aagtcgccga gcaagtgcgg accgtggtgg gcgagctcga cgcgagcatt
     2821 ctcgacctgc acgtctggcg cgtgggcccc ggggcgctcg cggtgatcgt cgacgttgcc
     2881 gagcccgcct ccccttgtgc gatccgggaa cggctgcgcg gcctgaaggg cgtggtgcat
     2941 atgactgtcc agacgcatcc gggcagttag gtccggggtg ccaatccttt tctgcttagg
     3001 ctatggcgcg cggctcatga gccgccccga tgcatggatc cacctccccg aaagcccgcc
     3061 cgtggctgaa tgaagctgct gccaccgcgt ggctggcggg gccgcttatc ctcacgaacc
     3121 tggcccaatc ggcgatcaac gcgacggatg tggtgttgct cggccggctg ggcgcaaacg
     3181 agctcgccgc gtcctcgatc ggggtcaatc tttacatcgc cttcctgatc ttcggcatgg
     3241 ggctggtgat ggccgcctcg ccgatcctgg cgaagcagct tggccggcag aagcacagcc
     3301 tgcgcgaggt ccgccgcacg gtgcgccagg cgatatgggc ggcgatgacg atcagcgtcc
     3361 ccgtatgggc aatcctgtg
//
LOCUS       DASQVK010000330         6507 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_337384,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000330 DASQVK010000000
VERSION     DASQVK010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6507
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337384"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..153
                     /locus_tag="VE567_07080"
     CDS             <1..153
                     /locus_tag="VE567_07080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007705860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYZ48639.1"
                     /translation="MDAGVTINRPPRDGHMAFVRTPDGISIELLQEGRLEPAEPWVSM
                     PNTGSW"
     gene            150..1214
                     /locus_tag="VE567_07085"
     CDS             150..1214
                     /locus_tag="VE567_07085"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016703 - oxidoreductase activity, acting
                     on single donors with incorporation of molecular oxygen,
                     incorporation of one atom of oxygen (internal
                     monooxygenases or internal mixed function oxidases)
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HYZ48640.1"
                     /translation="MTGWPNRSLLDRLGIEHPILLAPMAGAGGVDLAIAVARSGGLAA
                     LPCGMATPAQIEEEVARFRAATDRPLNLNFLCHELVEQVDDGAWRALLDPYYAELGAP
                     PGDPPPLRRPFSAEWAELIERLRPEVVSFHFGLPAPALLDRVRATGAFLIGNATSLAE
                     GRWLAERGVDAVIAQGWEAGGHNGHFLTVAPSEAGLFALLPQLAEALDLPVIAAGGIM
                     DGRGVVAALTLGASAVQLGTAFLACPESLIGAHHREALASSRAERTAATNLISGRIAR
                     SIPNRLIDELGPVNPAAPPYPHASAALAPLRRAAEALGRDDFTPLLAGQGAPLVRAEP
                     ASDKIRWLARDALDLLSARS"
     gene            1218..1949
                     /gene="gloB"
                     /locus_tag="VE567_07090"
     CDS             1218..1949
                     /gene="gloB"
                     /locus_tag="VE567_07090"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004416 - hydroxyacylglutathione hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0019243 - methylglyoxal catabolic process
                     to D-lactate via S-lactoyl-glutathione [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HYZ48641.1"
                     /translation="MPLDIVRVPVLSDNYVWLAHEPGSGETMVVDPAVAKPVLDAAAE
                     RRWRITQIWNTHWHPDHTGGNAEIKAATGCTITGPAAEAARIPTLDRTVRERDRVRLG
                     PLEAEVIEVPAHTAGHIAYHFASENVIFVGDTLFAMGCGRLFEGTAEQMFANMRRLAA
                     LPEDTRVYCAHEYTLSNGRYALAAEPDNQAVIARMAEVAAARDRGEATVPTTIGLELA
                     TNPFMRARDAVQLAERRAAKDSFRG"
     gene            1988..2395
                     /locus_tag="VE567_07095"
     CDS             1988..2395
                     /locus_tag="VE567_07095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48642.1"
                     /translation="MRKTITLIGLSVALIGTGAFAQMGGRVSPRDLKLMDQWLAGKEA
                     GKPVSCIPHSRIRATYYVGGQTILYKFDNNLVYRNDPPGGCPGLNSNLALETRNPTGL
                     LCQGEIAQVRDYSQGYSPGGCALGAFVPYRKVK"
     gene            complement(2400..4190)
                     /locus_tag="VE567_07100"
     CDS             complement(2400..4190)
                     /locus_tag="VE567_07100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-dependent synthetase/ligase"
                     /protein_id="HYZ48643.1"
                     /translation="MRQFEHFPNLVTMFFRRARENGDKPFLWRKQDGEWRPIGWSEAA
                     RRVAAVAAGLKGLGLQPGDRVMLVSENRPEWCLADLAIMAAGCITVPTYTTNTERDHL
                     HILENSGAAAAIVSTEKLARTLLPAVLRANEARHLISMENLRTPQGGDLAFHLWDALL
                     ATAGDLAATERDAAAMRREDLACIIYTSGTGGAPRGVRQHHGALLSNVEGCAQIIADD
                     FGWDDEVFLSFLPLSHAYEHTGGQFLPIGLGGQIYYAESLEKLAANMEEARPTIMVVV
                     PRLFEVLRQRISKNIEKQGGLAPHLLSRALSLGAKELEGKTSFVDKPLDFALDKLFRP
                     KVQRRFGGRLKAMVSGGAPLNPEIGVFFHSLGLTLLQGYGQTEAGPVISCNRPKAGIA
                     MHTVGPPLKDVEVRIAEDGEILVRGELVMHGYWRNEAETARVLRDGWLHTGDIGHLDE
                     KGRVVITDRKKDLIINDKGDNVSPQRVEGMLTLQPEILQAMVYGDRRPYLVGLIVPDP
                     EWTAEWAVANNYKCDFAALADNPMCRAALMAAVDRVNRELSVIEKVRRIAIADEPFTI
                     ENEQLTPSLKIRRHVLKQVYGARLDALYKG"
     gene            complement(4218..5921)
                     /gene="ggt"
                     /locus_tag="VE567_07105"
     CDS             complement(4218..5921)
                     /gene="ggt"
                     /locus_tag="VE567_07105"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HYZ48644.1"
                     /translation="MIERLLRFLLPLSLLAGCATAQTPAAPASHAAGGAVSAADPRAA
                     AAGQEILRAGGSATDAAIAIAIALTVVEPQSSGIGGGGFMVVHDAKTGKLSSYDGRET
                     APAAATPALFLDASGKPMPFGEAVPGGKSVGVPGNLRMWAMAHRAHGKLPWAKLFEPA
                     SRLARDGFEITPRMHEFLQSRAAGAGFTPWGRSYFFDANGAPKPTGTVLRNPELAATL
                     ESIARRGADSFYVGPTAQALVNTVRGAPKNPSQMTAGDLASYDAKARPVYCGSYRGYR
                     ICGMGPPSGFVTMYEVLKQLERFDLRVLGPNNPEAWHLIAESERLAYADRDAFMADPD
                     FASVPAQGLMSDVYLAERSALIRPDARIAQAMAGTPPGARPVTPAKSPEPAGTSHMVA
                     VDAQGNVATMTSTIEGPFGSGLTVGGFYLNNELTDFSFAPERDGAPVANRVEGGKRPR
                     SAMSPTVVYGPDGHVLVALGAAGGATIIAQVAKTIIAIIDWGLPAEGAIAAPQLFATG
                     DTVTVEQGSALEAMIPALQAKGHNVTARALPLKGNAVEWRDGRWIGAADRRSEGAALE
                     E"
     gene            complement(5954..>6507)
                     /locus_tag="VE567_07110"
     CDS             complement(5954..>6507)
                     /locus_tag="VE567_07110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011540991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase (quinone)"
                     /protein_id="HYZ48645.1"
                     /translation="YLTINVSSPNTPGLRALQSAEALRALIGGVMGALAGPKPVFLKV
                     APDLEHGEIDAIARVAIEGGVSALIVANTTVSRPPLRSRHAGESGGLSGAPLAALALE
                     TLRAFRAATGRALPLVAAGGIGSADDAYARIRAGASLVQLYSALVYEGPGLARGIARG
                     LVERLRRDGFHRVADAVGMESPA"
BASE COUNT         1038 a         2222 c         2196 g         1051 t
ORIGIN      
        1 atggacgcgg gggtgacgat caaccgcccg ccccgcgacg gccatatggc gttcgtgagg
       61 acgcccgacg gcatctcgat cgagctgctc caggaaggcc ggcttgagcc cgccgaaccc
      121 tgggtgtcga tgccgaacac aggcagctgg tgaccggctg gccgaaccgg tcgctgctcg
      181 accggctcgg catcgagcat ccgatcctgc tcgctccgat ggcgggcgcg ggcggcgtcg
      241 atctggccat tgcggtcgcg cgcagcggcg gcctcgctgc cctcccctgc ggtatggcga
      301 cgccggcgca gatcgaggag gaagtggcgc gcttccgcgc cgcgacggac aggccgctca
      361 atctcaattt cttgtgccac gagctggtgg agcaggtgga cgacggcgct tggcgcgccc
      421 tgctcgatcc ctattatgcc gagctcggcg ccccgcccgg cgatccgccg ccgctgcgcc
      481 gcccgttctc ggcggaatgg gccgagctga tcgagcggct gaggccggaa gtggtcagct
      541 tccatttcgg cctgcccgca ccggcgctgc tcgatcgggt gcgcgcgacc ggggcctttc
      601 taatcggcaa tgcgacgagc ttggccgaag ggcgctggct cgccgaacgc ggcgtcgacg
      661 cggtgatcgc gcagggctgg gaagcaggcg ggcataacgg ccatttcctg accgttgcgc
      721 cttccgaggc cgggctattc gcgctcctgc cgcagctcgc cgaggcactg gacctgccgg
      781 tgatcgcggc gggcgggatc atggacggac gcggcgtcgt ggcggcgctg acactcggcg
      841 cgtcggcggt ccaactcggc acggccttcc tcgcctgccc cgaaagcctg atcggcgcac
      901 atcatcgcga ggcgctggcg agcagccggg ccgagcggac ggccgcgacc aatctcatct
      961 ccggccgcat cgcacggagc atcccgaacc ggctgatcga cgagctcggg cccgtgaacc
     1021 cggcggcgcc accctatccg cacgcctcgg cagcgctggc tcccctccgt cgcgccgcgg
     1081 aagcgcttgg acgtgacgac ttcacgccgc tcctcgccgg ccaaggggct ccccttgtcc
     1141 gcgccgaacc tgctagtgac aagatccgct ggctggcgcg cgacgcgctg gacctgctgt
     1201 cagcacggag ctgagtcatg cctctcgata tcgtccgcgt gcccgtcctc agcgacaatt
     1261 atgtttggct ggcgcacgag ccaggctcag gagagacgat ggtggtcgat ccggccgtcg
     1321 ctaaaccggt tttggatgcg gcagcggaac gccgctggcg gatcactcag atctggaaca
     1381 cgcattggca tccggaccac accggcggca atgccgagat caaggcggcg accggctgca
     1441 caatcaccgg ccccgccgcc gaagccgcac gcatcccgac gctcgaccgc accgtgcggg
     1501 agcgggatcg ggtgcggctc ggcccactcg aggccgaggt gatcgaagtg ccggcccaca
     1561 cggccgggca catcgcctat cacttcgcgt ccgaaaatgt gatcttcgtc ggcgatacct
     1621 tgttcgcaat gggctgcggc cggctctttg aggggaccgc cgagcagatg ttcgccaata
     1681 tgcgccgcct ggccgcgctc cccgaggaca cgcgcgttta ttgcgcgcac gaatatacgc
     1741 tgtcgaacgg ccgctacgcg cttgcggccg agccggacaa tcaggcggtg attgcacgca
     1801 tggccgaagt ggcggcggcg cgggaccgtg gtgaagcgac agtgccgacc acgatcggcc
     1861 ttgagcttgc caccaacccg ttcatgcgcg cccgcgacgc cgttcagctt gccgaaaggc
     1921 gcgccgccaa agatagcttc agggggtaaa tgcgttcagg actccgaaca gacggaagga
     1981 cggaaccatg cgcaagacga tcacgcttat cggcctttcg gtcgctctga tcggcaccgg
     2041 cgcgttcgct cagatgggcg gccgcgtctc tccgcgcgac ctgaagctta tggaccagtg
     2101 gctggcgggc aaggaggccg gcaagccggt cagctgcatt ccgcacagcc gcatccgcgc
     2161 cacttattat gtcggcggac agacgatcct ctacaagttc gacaacaacc tggtgtaccg
     2221 caacgacccg cccggcggct gcccggggct caacagcaat ctggcgctgg agacgcgcaa
     2281 tccgaccggg ctgctctgcc aaggcgagat cgcgcaggtg cgcgactata gccaaggcta
     2341 ttcgcccggc ggctgcgcgc tgggcgcgtt cgtgccttat cgcaaagtga agtagcacct
     2401 caccccttat agagcgcgtc cagcctggcc ccgtacacct gcttcagcac gtggcggcgg
     2461 atcttcaggg acggggtgag ctgctcgttc tcgatcgtga acggctcgtc ggcaatggcg
     2521 atgcggcgga ccttttcgat cactgacagc tcccgattga cgcggtccac cgccgccatc
     2581 agcgccgccc tgcacatcgg attgtccgcc agcgcggcga aatcgcattt atagttgttc
     2641 gcgaccgccc attccgcggt ccattcggga tcgggcacga tcagcccgac caggtagggc
     2701 cggcggtcgc catagaccat tgcctggagg atttcgggct gcagcgtcag catgccctcg
     2761 actctttgcg ggctgacatt gtcgcccttg tcgttgatga tcaggtcctt cttgcggtcg
     2821 gtgatgacga cgcggccttt ctcgtcgaga tggccgatat cgcccgtgtg cagccagcca
     2881 tcccgcagca cgcgcgccgt ctccgcctcg ttcctccaat agccgtgcat gacgagttcg
     2941 ccgcgaacca ggatctcgcc atcctcggcg atccgaacct cgacatcctt gagcggcgga
     3001 ccgacggtgt gcatcgcgat ccccgccttc gggcggttgc agctgatcac tggccccgcc
     3061 tcggtctggc cgtagccttg cagcaaggtc agccccagcg aatggaagaa gacgccgatt
     3121 tcgggattga gcggggcgcc gcccgacacc atggctttca gccgcccgcc gaaccggcgc
     3181 tggaccttcg gacgaaagag cttgtcgagt gcgaaatcga gcggcttgtc gacgaaggag
     3241 gttttgccct ccagttcctt ggcgccgagc gaaagcgcgc ggctgagcag atgcggggca
     3301 aggccgccct gcttctcgat gttcttggaa atgcgttgac gcagcacttc gaacaggcgc
     3361 ggcaccacga ccatgatcgt cggccgcgct tcctccatat tggcggcgag cttctcgagg
     3421 ctttccgcat aatagatctg tcccccaagc ccgatgggga ggaactgccc gccggtatgc
     3481 tcataggcgt ggctgagcgg caggaaggac aggaagactt cgtcgtccca gccgaaatcg
     3541 tcggcgatga tctgggcgca gccttcgaca ttgctgagga gcgcgccgtg atgctggcgc
     3601 acgccgcgcg gggcgccgcc agtgccgctc gtatagatga tgcaggcaag atcctcgcgc
     3661 cgcatcgcgg cggcgtcgcg ctcggttgca gccaggtcgc ctgcggttgc aagcagcgcg
     3721 tcccacagat ggaaggcaag gtcgccgccc tggggcgtgc gcaggttttc catcgagatc
     3781 agatgccgcg cctcgttcgc ccgcagcacc gccggcaaca gcgtcctggc gagcttctcg
     3841 gtcgagacga tcgccgcggc cgcgccgcta ttctccagga tgtggagatg atcgcgctcg
     3901 gtattggtcg tgtaggtggg gacggtgatg cagcccgcgg ccatgatggc gagatcggcg
     3961 aggcaccatt cgggccggtt ctccgatacc agcatcaccc ggtcgccggg ctgcagcccc
     4021 aggcccttga gcccggcggc gaccgcggcg actcggcgcg ccgcctccga ccagccgatc
     4081 gggcgccatt cgccgtcctg cttgcgccac agaaacggct tgtcgccatt ctcgcgcgcc
     4141 cgcctgaaga acatcgtcac cagattcggg aaatgttcga actggcgcat cacccctcct
     4201 gatttcacgc gcttctttta ttcttcgagc gcggcaccct cgctacggcg gtcggccgcg
     4261 ccgatccagc ggccgtcccg ccattccacg gcattgcctt tgagcggcag cgcgcgggcg
     4321 gtgacgttgt gccctttggc ctgcaaggcc gggatcatcg cttcgagcgc gctgccctgt
     4381 tcgaccgtca ccgtgtcgcc ggtcgcgaaa agctgcggcg ctgcaattgc gccctcggcc
     4441 ggcaagcccc agtcgattat cgcgatgatg gtcttggcga cctgggcgat gatcgttgcc
     4501 ccgcccgccg cgccgagcgc aacaagcaca tggccgtcgg gcccatagac gaccgtcggc
     4561 gacatcgcgc tacgcggccg cttcccgcct tccacccgat tggctacagg agcgccatcg
     4621 cgctcgggcg cgaagctgaa atcggtgagc tcgttgttca gatagaagcc gccgaccgtc
     4681 aggcccgacc caaacgggcc ttcgatggtc gacgtcatgg tcgcgacatt cccttgcgcg
     4741 tccaccgcga ccatgtgcga ggtgcccgcg ggctcgggcg acttggcggg cgtgaccggc
     4801 cgcgctcccg ggggcgtgcc ggccatagct tgggcgatcc gcgcatcggg ccggatcagc
     4861 gccgagcgct cggcgagata gacatcgctc atcagccctt gcgcgggcac ggacgcgaaa
     4921 tcgggatcgg ccatgaatgc gtcgcgatcg gcataagcga gccgctccga ttcggcgatc
     4981 agatgccagg cctcgggatt gttcggcccg agcacgcgga ggtcgaaccg ctcgagctgc
     5041 ttcagcactt cgtacatcgt gacgaagccg gagggcgggc ccatgccgca gatgcggtag
     5101 ccgcgatagg aaccacaata gaccggccgc gccttcgcgt catagctggc gaggtcaccg
     5161 gccgtcattt gcgagggatt cttgggcgcg ccgcgaaccg tgttcaccag cgcctgggcc
     5221 gtcggtccga catagaagga gtcggcgccg cgccgggcga tcgactcaag ggtggcggca
     5281 agctcgggat tgcgcagcac cgtgccggtc ggcttgggcg cgccattcgc gtcgaagaaa
     5341 tagctgcggc cccagggggt gaagccggcg ccggcggccc ggctttggag gaattcatgc
     5401 atgcgcgggg tgatctcgaa gccgtcccgc gcgaggcggc tcgccggctc gaacaatttc
     5461 gcccaaggga gcttgccgtg cgcccggtgc gccattgccc acatgcgcag attgccgggc
     5521 acgccgacgc tcttgccgcc gggcacggct tcgccgaacg gcatcggctt gccgctggcg
     5581 tccaggaaca gggccggcgt cgctgcggcg ggcgcggtct cgcggccgtc atagctggaa
     5641 agctttccgg tcttcgcgtc gtggacgacc atgaagccgc cgccgccaat gccggaagat
     5701 tgcggctcga ccaccgtcaa cgcgatcgcg atcgcaatcg ccgcgtccgt ggcgctgccg
     5761 ccggcgcgga gaatctcctg ccctgcagcg gcggcgcggg ggtcggcagc ggagaccgcg
     5821 ccgccagccg catggctggc aggagcggcg ggagtctggg cggtggcgca gccggcgagc
     5881 aggctcagcg gcagcaggaa tctgagcagg cgttcgatca tcgggcgcga ccctagaacg
     5941 atcgcgccaa agctcaagcg ggcgactcca tccccacggc gtcggcgact cgatggaaac
     6001 cgtcgcgccg cagccgttcg accagtccac gggcaatccc gcgcgcgagg ccggggcctt
     6061 catagaccag cgcggagtag agttgcacca gcgacgcgcc agcacggatg cgggcatagg
     6121 catcgtccgc gctaccgatg ccgccggccg ccaccagcgg cagtgcgcgc ccggtcgcgg
     6181 cgcggaacgc ccgcagcgtt tcaagcgcaa gtgccgccag cggcgcgccg gagagcccac
     6241 ccgactcgcc ggcgtggcgg gaacggagcg gcgggcgcga cacggtcgtg ttggcgacga
     6301 tcagcgcgct cactccgccc tcgatggcaa cgcgtgcgat cgcgtcgatc tcgccatgct
     6361 ccagatcggg tgcaaccttg aggaagacgg gcttggggcc cgccagtgcg cccatgacgc
     6421 cgccaatcag cgccctgagc gcctcggcgc tctgcaatgc gcgcaggccc ggggtgttgg
     6481 gggagctcac attgatcgtc agataat
//
LOCUS       DASQVK010000331         6999 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_116399,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000331 DASQVK010000000
VERSION     DASQVK010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6999)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6999)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6999
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116399"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..976)
                     /locus_tag="VE567_07115"
     CDS             complement(<1..976)
                     /locus_tag="VE567_07115"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mandelate racemase/muconate lactonizing enzyme
                     family protein"
                     /protein_id="HYZ48646.1"
                     /translation="MKIVDVKTAVVAYHGQATIVRIDTDIGISGFGEANPDAGAAAIV
                     GLVSELKAELIGEDPRNVEACWEKIRRKHVFSGAQSGVFLIALTGLEMALWDIAAKAA
                     GQPLYRMFGGKFRDRIRLYADCGDGDDETGLPEACAARATRMVAEGFTALKFDIDNLN
                     HPAKFDRFNHTINGAELRSMIERVAAVREAIGPDIDLCIDLHARYDVPSACRIAAAME
                     RFELLWLEEPVPAENVEALKQVRMRSRTPICVGENLYLRWGFRELFQLQGTDVIMPDV
                     PKCGGLSESRKIAHLAEMYYIPFAPHLVSTPLGTMATCHVCASVPNFLV"
     gene            complement(983..1723)
                     /locus_tag="VE567_07120"
     CDS             complement(983..1723)
                     /locus_tag="VE567_07120"
                     /inference="COORDINATES: protein motif:HMM:NF006093.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease activity regulator RraA"
                     /protein_id="HYZ48647.1"
                     /translation="MVHNQDITRPPKDMIEALKDIGAATVASTLGHMGFKNPHMVGPL
                     PQNRGKSVVGPALTLRFMPQRPDLFSEGEYADPETQLHRHVLYHVQEGDVVVVDARAD
                     MSSGVFGDMMATFFKGRGGAGIVIDGCMRDRPNVEALDLPLWLRGWTPNYHVQTSIYP
                     DAVNVPIACGNVTVIPGDIIVADDDGAVVLPVSMARAVIESAQKHHEWEVFSREKLMQ
                     GAPLQRYYPLHPDANDEYQAWRAAQPKT"
     gene            complement(1742..2902)
                     /locus_tag="VE567_07125"
     CDS             complement(1742..2902)
                     /locus_tag="VE567_07125"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mandelate racemase/muconate lactonizing enzyme
                     family protein"
                     /protein_id="HYZ48648.1"
                     /translation="MAAKLKITAIKPYPVWVGMRNQMLVKVETDGSVFGWGESGLSGR
                     ERAVTGAIEHFREFLIGRDAMQIGRIWQQTYRSQYFEGGRVLQAAISAIDIALHDVKG
                     KALGVPVYELLGGKQRDRIPTFASTGDEAEGEAAIERASELRAQGWQAIRFFPAGQSS
                     REIFEPRGSIAPTAKMLNQARKVLGDEVVLGVDYHHRLSVAEAASFCGKLGRGVLDFL
                     EEPIRDETPEAYEALRRMTEIPFAIGEEFASKWQFLPYVERDIHQFNRLDVCNVGGLT
                     EAMKVASWSEAHYVDLMPHNPLGPICTAASIHLGAAVANFAWLETRVPEAKGFDSAEF
                     FPIQPRLDGVDYPVTGLPGLGVEVNEAAVSAQSQRFWEAPHLKRRDGSVTNW"
     gene            complement(2936..4033)
                     /locus_tag="VE567_07130"
     CDS             complement(2936..4033)
                     /locus_tag="VE567_07130"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYZ48649.1"
                     /translation="MADVLLTNLVKAYGAFKAVNDVSLTVKDGEFVALVGPSGCGKTT
                     TLNLVAGLLPITSGTITIAGRVVNDVDPKDRDIAMVFQNYALYPQKSVYRNLAFPLQM
                     RKLPRDEIDRRVKRTAQVLDMTHLLERKPRELSGGQQQRVALGRALVRDPAVFLMDEP
                     LSNLDAKLRVQMRSEIKRFHQDLAATIVYVTHDQLEAMTMADKMAVMNGGFLQQYDSP
                     ARVFADPVNMFVASFIGSPAMSLIPVQRSSVDGQPALTGQGGWTMALSARNQRKVATA
                     RSDNVVLGARHSTIKLHTSEVAGRIPANVYTVEPTGDVTFVQVALSGALVNISVPPEM
                     SVVPDQSVWLEFDQDRLHLFDAETQMALKAD"
     gene            complement(4045..4806)
                     /locus_tag="VE567_07135"
     CDS             complement(4045..4806)
                     /locus_tag="VE567_07135"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HYZ48650.1"
                     /translation="MLLTSIKSGFAAMQFPPQWWPDEPTFASYRKLLDPTNSVGHDFL
                     RFFWNSLFVATATTILAVAVAVPAAYAFSRFDFPGRSVLFFAVLLRNMFPAVIFLVPL
                     FILMRLLGLVNTHYSLILTYLTFGLPLAIWLLKGFYDNIPPQLEQAARIDGATRFQAF
                     LQIVMPLSTPGIIATAIYSFIGAWNEYIFAYTFLNRNDQLTLPIGIQRFFSENTTDFP
                     GLMAASFIMSLPVVVLFLLLQRYFVRALTEGAVKH"
     gene            complement(4926..5783)
                     /locus_tag="VE567_07140"
     CDS             complement(4926..5783)
                     /locus_tag="VE567_07140"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HYZ48651.1"
                     /translation="MLPALLAMLVVIAYPIYYTIELSFYTTPPGLQLRDKVFVGLDNY
                     GLILKSDVFWRVTVNTLIWTVASTLFSFALGLGSALALHRAFIGRGILRGILIIPWVI
                     SAVAASYIWKWIYHSDFGVIGAILVGLGITNRPPNLIDSVDTVLPALIVVNVWREFPF
                     AMIMLMAGLQTVPDQLLHAAKVDGANTWQRFWHVTFPHLRSVSTVTVLLLAVANFNSF
                     IIPWIMTGGGPSNASHIWITHIYELAFGRQRWGIAAAYSVLLFLILMLFGYFYVRALG
                     GREARTLAA"
     gene            complement(5961..>6999)
                     /locus_tag="VE567_07145"
     CDS             complement(5961..>6999)
                     /locus_tag="VE567_07145"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HYZ48652.1"
                     /translation="QELKPEDVGYKTEDFWPGAMKSVIWKGKTYGIPTNNETMAFIWN
                     ADVFKRAGLDPEKPPATWDDVVAYSKQIHDRLGIAGYGLVARKNAGNTPYRFLPQLWG
                     YGGGVFDEATAKPTYKDVELNSAASKRALQASYDMYVRDKSVPVSALTNQQADNQPLF
                     LAGQLGMMISHPSDYDVMQDLKKKATGSDLAKAQTVIDNMRYGPIPTGPDGRRAVVFG
                     GSNMHIVKPQYVDGGKVDLPAAKALICFWTGPEWSLKMAYAGSNPGNLNGFKTKWMKD
                     RLEHIKFLDVTTSMLPYGVPFPAIPEAPEIMNIVVPDMLQNALTGAMSVDQAAEDAAK
                     KVKTIMGGGGL"
BASE COUNT         1326 a         2194 c         2199 g         1280 t
ORIGIN      
        1 ggacaaggaa attgggtacg ctggcgcaga cgtggcaagt cgccatggta ccgagcggcg
       61 tggaaacgag atgcggcgcg aatggaatgt agtacatctc cgcgagatgc gcgatcttgc
      121 ggctctccga aagcccgccg cacttcggga catccggcat gatgacatca gtcccctgca
      181 gctgaaacag ttcgcggaag ccccatcgca ggtaaagatt ttcgccgacg cagatcggcg
      241 tgcggctgcg cattcggact tgcttgagcg cttcgacgtt ttccgccgga accggttcct
      301 cgagccagag cagttcgaag cgctccatcg cggctgcgat ccggcatgcg ctcgggacgt
      361 catagcgggc gtgaagatcg atgcagagat cgatgtcggg cccgatggcc tcgcgcacgg
      421 cggccacacg ctcgatcatc gagcggagtt ctgcaccgtt gatcgtgtgg ttgaaccgat
      481 cgaacttggc gggatgattc agattgtcga tatcgaactt gagcgcggtg aacccttccg
      541 cgaccatgcg tgtcgctcgc gcggcgcatg cctcaggtaa gcccgtctcg tcgtcgccgt
      601 cgccacagtc ggcatagagc cggatccggt cgcggaactt gccgccgaac atccgataca
      661 gcggctgtcc cgccgccttg gccgcgatgt cccacaacgc catctcgagc ccggtcagtg
      721 caatcaggaa cacacccgac tgcgcgcccg agaacacgtg tttgcggcga atcttctccc
      781 agcacgcctc gacattgcgc ggatcctcgc cgatcagctc ggctttcagc tccgagacga
      841 gcccaacgat cgcagctgcg ccagcatcgg gattggcttc accaaagcca gagatgccta
      901 tatccgtgtc gatcctgacg atcgtcgcct gaccatggta ggcgacgacc gccgtcttga
      961 cgtcgacgat cttcatatcg ggtcaggtct tgggctgggc ggcgcgccag gcctggtatt
     1021 cgtcattcgc gtcggggtgc agcgggtaat agcgctgcag cggcgcaccc tgcatgagct
     1081 tctcgcgcga gaacacttcc cattcgtggt gtttctgtgc gctttcgatg acggctcttg
     1141 ccatcgagac gggcaggacc acggcgccgt catcgtcggc gacgatgatg tcaccgggga
     1201 tcaccgtgac attgccgcac gcgatcggca cgttcactgc atcgggataa atgctggtct
     1261 ggacgtgata attcggcgtc cacccccgca gccagagcgg caggtcgagc gcctccacgt
     1321 tcgggcgatc acgcatgcac ccgtcgatga cgatgcccgc gccgccgcgt cccttgaaga
     1381 acgtcgccat catgtcgccg aagacgcccg aactcatgtc ggcacgcgcg tccaccacga
     1441 cgacgtcgcc ttcctgcacg tggtagagaa cgtggcgatg cagctgagtc tcgggatcgg
     1501 catattcgcc ttccgagaac aggtccggac gctgcggcat gaaccgcagc gtcagggccg
     1561 gtccgacgac cgacttgccc cggttctgcg gaagcggccc gaccatatga gggttcttga
     1621 aacccatgtg gcccagcgtc gacgcgaccg tcgcggcacc gatgtccttg agcgcctcga
     1681 tcatgtcctt gggcgggcgc gtgatgtctt ggttgtgaac catatacgaa cctttcaatg
     1741 gttaccagtt cgtgacggag ccgtcccgtc gcttcaaatg cggcgcctcc caaaagcgct
     1801 ggctctgcgc gctgacggcc gcttcgttca cctcgacgcc gaggccaggc agcccggtga
     1861 cgggatagtc cacaccgtcg agacgcggct ggatcgggaa gaactctgcg ctgtcgaacc
     1921 ccttcgcctc aggcaccctc gtctcgagcc aggcgaagtt ggcgacggcc gccccaagat
     1981 gaatcgacgc cgccgtgcag atcggaccga gcggattgtg cggcatgagg tcgacatagt
     2041 gcgcctcgct ccaacttgcg accttcatcg cctcggttag cccgccgaca ttgcacacat
     2101 cgagacgatt gaactggtga atgtcgcgct cgacatatgg gaggaactgc cacttgctgg
     2161 cgaattcctc gccgattgcg aagggtattt cggtcatgcg ccgcagtgcc tcgtaggcct
     2221 ccggcgtctc gtcgcgtatc ggctcctcga ggaagtccag aacgccacgg ccgagcttgc
     2281 cgcagaagct cgcggcttcc gctaccgaca ggcgatggtg gtagtcgacg ccgagcacca
     2341 cctcgtcgcc caaaaccttc cgtgcctggt tgagcatctt ggccgtgggc gcgatcgacc
     2401 cgcgcggctc gaagatttca cgactgctct gccctgcggg aaagaagcgg atcgcctgcc
     2461 aaccctgggc gcgcagctcg ctcgcccgtt cgatcgcggc ctccccctct gcttcgtcgc
     2521 ccgtcgaggc gaaagtcgga atgcggtcgc gttgcttgcc gccgagcagt tcgtaaaccg
     2581 gcacacccag cgccttgccc ttcacatcat ggagcgcgat gtcgatcgcc gagatcgcgg
     2641 cctgcagcac acggccgccc tcgaaatact ggctgcgata ggtttgctgc caaatccggc
     2701 cgatctgcat ggcatcgcgg ccgatcagga actcgcgaaa atgctcgatc gcgccggtga
     2761 ccgcgcgctc acggccgctg aggccgctct cgccccagcc gaacacgctg ccatcggtct
     2821 cgaccttgac gagcatctgg ttgcgcatgc cgacccagac cggatacggc ttgatcgcgg
     2881 tgatcttcag cttcgctgcc acgtgcccgc agttccggtt cgttccgatt ccgcctcagt
     2941 ccgccttgag tgccatctgc gtctcggcgt cgaacagatg caggcgatct tgatcgaact
     3001 cgagccagac cgactggtcg ggcacgacgg acatctccgg cggcacgctg atgttgacga
     3061 gagcgccgga gagcgccacc tggacgaacg tcacgtcgcc cgtgggctcg accgtgtaga
     3121 cgttggccgg gatgcggcct gcgacttcgc tcgtatgcag cttaatcgtc gaatgcctcg
     3181 cgccgagcac cacattgtcc gaacgcgccg ttgcgacttt ccgctggttg cgcgcagaga
     3241 gcgccatcgt ccatcccccc tgacctgtca gcgcaggttg gccatcgacg ctcgagcgct
     3301 gcacggggat gaggctcatc gccgggctgc cgatgaagct cgcgacgaac atgttgacgg
     3361 gatctgcgaa aaccctggca ggagagtcgt attgctggag gaacccgccg ttcatgaccg
     3421 ccatcttgtc ggccatcgtc atcgcctcga gctgatcgtg ggtgacgtag acgatagttg
     3481 ccgccagatc ctgatgaaag cgcttgatct ccgagcgcat ctgcacgcgc agcttggcgt
     3541 ccaggttcga tagcggctcg tccatgagga aaacggcggg gtcgcggacc aaggcgcggc
     3601 cgagcgccac ccgctgctgc tgcccgccgg agagctctcg cggcttacgc tcgagcaggt
     3661 gcgtcatatc gagcacttgc gcggtccgtt tcacccgacg gtcgatttcg tcgcgcggca
     3721 gctttcgcat ctgcagggga aaggcgaggt tccggtaaac cgatttttgc gggtagagcg
     3781 cgtagttctg gaacaccatc gcgatgtccc gatccttcgg atcgacgtcg ttgaccaccc
     3841 gcccagcgat ggtgatcgtg ccggaggtga tcggcagcag gcccgcgacg aggttgagcg
     3901 tggttgtctt gccgcatccg gacggtccga cgagtgcaac gaactcgccg tctttgacgg
     3961 tcaacgagac gtcgttcacc gctttgaacg ccccatacgc tttgaccaga ttggtcagga
     4021 gcacatcggc cacggagatg ccctctaatg ttttacggcg ccctccgtga gggcgcgaac
     4081 gaagtagcgt tgcagcagca ggaagagcac gaccacgggt aggctcatga tgaagctggc
     4141 ggccatcagc ccggggaagt ccgtcgtgtt ttcggagaag aatcgctgga tgccgatagg
     4201 cagcgtcagc tggtcgttcc tatttaagaa cgtataggca aagatgtact cattccaggc
     4261 gccgatgaac gagtagatcg ccgtcgcgat gattcccggt gtcgacagcg gcatgacgat
     4321 ctgcaggaac gcctggaagc gggttgcgcc gtcgatgcgg gcggcctgct cgagctgtgg
     4381 agggatgttg tcgtagaagc ccttcaacag ccagatcgcg agcggaaggc cgaaggtgag
     4441 ataggtcagg attagcgagt aatgcgtgtt cacgaggccg agcaggcgca tcaggatgaa
     4501 cagcggcaca aggaagatga cagcggggaa catgttccgc agcaagacgg cgaaaaacaa
     4561 caccgatcgg cccggaaagt cgaaccggga gaaggcatag gccgcgggca ccgccaccgc
     4621 caccgccagg atcgtggtgg cggtcgcgac aaagaggctg ttccagaaga agcgcaggaa
     4681 gtcgtgaccg acgctgttgg tcggatcgag cagcttgcga tagctcgcga aggtcggctc
     4741 gtcgggccac cactggggcg ggaactgcat cgccgcgaag cccgacttga tcgaggtcag
     4801 cagcatccag atcatcggca gcgtggtgaa gagcaggatc ccggcgagaa aagcccgccc
     4861 tgcccagcgc cagccgtcga tggctggccg cggtttgggg ccggtcgcaa tgacgaggtc
     4921 ggaactcacg cggcgagtgt cctggcctcg cgtccaccga gcgcgcggac atagaagtag
     4981 ccgaagagca tcaggatcaa aaacagcagg accgagtacg ccgcggcgat accccagcgc
     5041 tgacgcccga aggccaactc gtagatatgg gttatccaga tgtgcgacgc attcgagggg
     5101 ccgcccccgg tcatgatcca ggggatgatg aacgagttga agttcgcgac cgccagcagc
     5161 agcaccgtca cggtcgaaac gctgcgcaga tgcggaaagg tcacgtgcca gaagcgctgc
     5221 cacgtgttgg cgccgtccac ttttgccgca tgcagcaatt ggtccggcac ggtctgcagc
     5281 ccggccatga gcatgatcat ggcgaagggg aactcacgcc agacgttgac gacgatcagc
     5341 gcggggagaa cggtatcgac gctatcgatc aggttgggcg ggcggttcgt tatcccgagc
     5401 ccgacgagaa tggcaccaat cacgccgaaa tcggagtgat agatccactt ccagatatac
     5461 gatgccgcaa ccgcgctgat cacccacgga atgatgagga tgccacgcaa aatgccgcgg
     5521 ccgatgaagg cccggtgcaa cgcaagcgcg ctgcccagac cgagggcgaa cgagaacagc
     5581 gtcgaagcga ccgtccagat cagggtattg accgtcacgc gccaaaacac gtcgctcttc
     5641 aggatcaggc cgtagttgtc cagcccgacg aacactttat cgcgaagctg gaggcccggc
     5701 ggtgtcgtgt agaacgaaag ttcgatcgtg taatagatcg ggtatgcgat caccaccagc
     5761 atcgcgagca gcgccggcag cacgtagaga taatccgctc gccggatcca agccctccgg
     5821 acgggacccg gttccggccg aacaatcggt ggggacgccg agaccagacc cgacgatagc
     5881 gcagtcatgg acgagcggca tccagcgcgg gtcggcaagt cacgatttca gtcgcgctcg
     5941 tcccgttacc gcgcgccggg ttagagaccg ccgccgccca taatggtctt caccttcttg
     6001 gccgcatctt cggccgcttg atcgaccgac atggcgcccg tcagtgcatt ctgcagcatg
     6061 tcgggaacga cgatattcat gatctccggc gcttcgggga tcgccgggaa cggcacgccg
     6121 tatggcagca tcgaggtcgt cacgtcgagg aacttgatgt gctcgagccg atccttcatc
     6181 cacttcgtct tgaagccgtt gagattgccc gggttggagc cggcataggc catcttgagc
     6241 gaccattccg ggccggtcca aaagcagatc agcgccttcg ccgcgggcag gtccaccttg
     6301 ccgccatcga cgtattgcgg cttcacgatg tgcatgttcg agccgccgaa cacgacggcc
     6361 cggcgaccgt ccggcccggt cgggatcggg ccgtaacgca tattgtcgat gacggtctgc
     6421 gccttcgcca ggtcgcttcc ggtcgccttc ttcttgaggt cctgcatcac gtcgtaatcc
     6481 gacggatgcg aaatcatcat gccgagctga cccgcaagga acagcggctg gttgtcggct
     6541 tgctggttcg tcagcgccga aaccgggacc gacttgtctc tgacatacat gtcgtaggaa
     6601 gcctgcagtg cccgcttgct ggctgcgctg ttcagctcga cgtccttgta ggtcggcttt
     6661 gccgtggcct cgtcgaacac gcccccgcca tagccccaga gctggggcag gaaacgataa
     6721 ggcgtgttgc ctgcgttctt gcgcgcgacg agcccgtaac cggcgatgcc gagcctgtcg
     6781 tggatctgtt tggagtaggc aacgacgtcg tcccacgtgg ccggcggctt ctcgggatca
     6841 agcccggccc gcttgaagac gtcggcgttc cagatgaacg ccatcgtctc gttgttcgtc
     6901 gggatcccgt aggtcttgcc tttccagatg accgacttca tcgccccggg ccagaagtcc
     6961 tccgttttgt aaccgacatc ctccggcttg agctcctgg
//
LOCUS       DASQVK010000332         2234 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_210993,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000332 DASQVK010000000
VERSION     DASQVK010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2234)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2234)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2234
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210993"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(91..756)
                     /gene="pdeM"
                     /locus_tag="VE567_07150"
     CDS             complement(91..756)
                     /gene="pdeM"
                     /locus_tag="VE567_07150"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019367599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ligase-associated DNA damage response
                     endonuclease PdeM"
                     /protein_id="HYZ48653.1"
                     /translation="MVPFSFAGHELAALSEGALFWPDRKALIVADLHLEKASWYAKTG
                     QMLPPYDSEATLTELTALARRVGAAELWCLGDSFHDREGCARLPEGPRQMLTELTGTL
                     RFVWITGNHDAGLTDHCGGEIMVEAEVDGLVLRHEATVDEDRPELSGHFHPKLRLTHR
                     GRNVARRCFVMTGTKLILPAFGALTGGLDVRHPQIARAVGRRAEALVPLADRLLRFPL
                     AAA"
     gene            complement(798..1973)
                     /locus_tag="VE567_07155"
     CDS             complement(798..1973)
                     /locus_tag="VE567_07155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017182035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase"
                     /protein_id="HYZ48654.1"
                     /translation="MLAFILAAAAAAPQPLVPPAVRALHERLLVLDTHLDTPVNLGRP
                     GWSFAERHRFVDDISQLDLPRMKEGGLDGGFFVIYTEQGPLTPEGYAAAKAHAWRREA
                     WIRAMVRENARSMELAFTPDDARRIAAQGKRVVFQSIENSYPLGESVAALKDFYDAGV
                     RLAGPVHNGDNQFADAASRGKRTWGGLSPLGREWVKEANRLGILIDLSHASDDVVDQV
                     LELSKAPVILSHSGPRALYDHPRNLDDARIKRIAAKGGVIQANSVFLAPRDDRPERDT
                     LSARWESLEDASPREAREAGQAWAKLEATQAANPVTFDRFMQSLLYLLKLVGPDHVGI
                     GMDWDGGGGLIGMDDVSALPRITAALKQAGYSDADVAKIWSGNLLRALGEAQRLAEH"
     gene            complement(1973..>2234)
                     /locus_tag="VE567_07160"
     CDS             complement(1973..>2234)
                     /locus_tag="VE567_07160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008994376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYZ48655.1"
                     /translation="PKIVGPAQTLAKKYFAGVPLTPMMSTGATDGIFLEAIGIPVYGV
                     PGIFFENDGNGAHGLNEHIRVRSLYEGRDYLFDLVKLYANAA"
BASE COUNT          400 a          727 c          727 g          380 t
ORIGIN      
        1 cgaactttgc gcgagaaatt tttcacggcg cctcctcgcg cgttccgttg aacgggcgga
       61 ccataagcag tgtgctcatg caaaaaaaga tcaggccgcg gcgagcggga agcgcagcag
      121 ccggtcggcc agcggcacga gcgcctcggc ccggcggccg acggcgcgcg cgatctgcgg
      181 gtggcggacg tccagtcccc cggtgagcgc tccgaacgcg ggcagaatca acttggtccc
      241 ggtcatcacg aagcagcgcc gcgcgacgtt gcggccgcga tgggtgaggc gaagcttggg
      301 gtggaaatgg ccggacagct cggggcgatc ctcatcgaca gtcgcctcgt gacggagcac
      361 cagtccgtcg acttcggctt cgaccatgat ctcgccgccg caatgatcgg tgagcccagc
      421 atcgtgattc ccggtgatcc agacgaaacg gagcgtgccg gtgagttcgg tcagcatctg
      481 ccgcggccct tcgggcagtc gcgcgcagcc ctcgcggtca tggaaactgt cgcccaggca
      541 ccaaagctcc gcggcgccta cgcggcgcgc cagcgcggtc agctccgtca gcgtcgcctc
      601 cgaatcgtag ggcgggagca tctggccggt cttggcatac cagctcgcct tttcgagatg
      661 cagatcggcg acgatcagcg ccttgcggtc aggccagaac agcgcgcctt cgctgagcgc
      721 ggccaactca tgcccggcga atgaaaaggg aaccataagg ggcgttatca tatattccgc
      781 tcgtgtcgag cgaacgttca gtgttccgcc aatctctgcg cctcgcccag cgcacgcagc
      841 aaattgccgc tccagatttt tgcaacatcg gcatccgaat agccggcctg cttcaacgcg
      901 gccgtgattc ggggcagggc ggaaacgtcg tccatgccga tgaggccgcc gccgccgtcc
      961 cagtccatgc cgatgccgac atggtcgggc ccgaccagct tcaacagata gagcaggctt
     1021 tgcatgaaac ggtcgaaagt gaccggattg gcggcctggg tcgcctccag cttcgcccag
     1081 gcctggccgg cttcgcgtgc ttcgcgagga ctggcatctt ccagcgactc ccaacgggcg
     1141 gatagcgtat ctcgctcggg ccgatcgtcg cgaggcgcga ggaaaaccga gttcgcctga
     1201 atgacgccgc cttttgccgc gatgcgtttg atccgcgcat cgtccagatt gcgcgggtga
     1261 tcgtagagcg ctcgcggccc cgaatgcgac aggatcacag gcgccttgga aagctccaac
     1321 acttgatcga ccacatcgtc ggaggcgtgg ctcaggtcga tcaggatgcc gagccggttg
     1381 gcttctttca cccattcgcg cccgagcggg ctcaatccgc cccaggtccg tttgccccgg
     1441 ctggcggcat cggcgaactg attgtcgccg ttgtgaacgg gccctgccaa ccgcacgccg
     1501 gcatcgtaga aatccttgag cgcggcaacg ctttcgccca gcggatagct gttctcgatc
     1561 gactggaaga cgacccgctt gccttgggcg gcgatccggc gcgcgtcatc gggcgtgaag
     1621 gccagctcca tgcttcgcgc attctcacgc accatcgcac ggatccatgc ctcgcgccgc
     1681 caggcatgcg ccttggctgc ggcatagcct tccggcgtga gcggcccctg ctcggtatag
     1741 atgacgaaga acccgccatc caatccgcct tctttcatcc ggggcaggtc aagctggctg
     1801 atgtcgtcga caaaacggtg ccgctccgca aagctccagc ccggccggcc gagattgacc
     1861 ggcgtgtcga gatgcgtgtc gagcaccaac agccgctcgt gcagggcgcg gacggcgggc
     1921 ggcacgagag gctgaggcgc ggcagcggcc gcggcaagga tgaacgccag catcacgccg
     1981 cgttcgcgta gagcttgacc aggtcgaaca gatagtcgcg gccctcgtag agcgagcgaa
     2041 cgcggatatg ctcgttgagg ccgtgagcgc cattgccgtc gttctcgaag aaaatgcccg
     2101 gaacgccgta aaccgggatg ccgatcgcct cgaggaaaat gccgtcggtc gcccctgtgg
     2161 acatcatcgg cgtcagcggg acgccggcga aatatttctt ggcgagcgtc tgggcgggcc
     2221 cgacgatttt cgga
//
LOCUS       DASQVK010000333         3190 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_242248,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000333 DASQVK010000000
VERSION     DASQVK010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3190
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_242248"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..582)
                     /gene="ung"
                     /locus_tag="VE567_07165"
     CDS             complement(<1..582)
                     /gene="ung"
                     /locus_tag="VE567_07165"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020818739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HYZ48656.1"
                     /translation="MGDVKLHPSWLAPLGGEFADPYMAGLKQFLLAEKAAGKRIFPAG
                     GEWFRALDLTPLEDVRVVILGQDPYHGPGQAHGLCFSVRPGTRIPPSLVNIYKELESD
                     LGIPPARHGFLEHWAQQGVLLLNAVLTVEMGMAASHQGRGWERFTDAVVRLVNARAEP
                     VVFLLWGSHAQKKAAFVDGSRHLVLKAPHPSPLS"
     gene            complement(600..1715)
                     /gene="ispG"
                     /locus_tag="VE567_07170"
                     /gene_synonym="gcpE"
     CDS             complement(600..1715)
                     /gene="ispG"
                     /locus_tag="VE567_07170"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HYZ48657.1"
                     /translation="MSVRPWRDIVRRKSRQIMVGTVPVGGDAPVTVQTMTNTPTEDAK
                     ATIDQVRRCEEAGADIVRVSCPTAEATAAFCQIARAARVPLVADIHFHYKRALEAADA
                     GAACLRINPGNIGSSERVAEVVRAAKANGCAIRIGVNAGSLEKDLLEKYGEPCPEALV
                     ESALDHIKLLQDHDFHEYKVAVKASDVFLAVAAYQQLADAVDCPLHLGITEAGGLIGG
                     TVKSAIGIGSLLWYGIGDTIRVSLSAEPEEEVRVGFEILKALGIRNRGVRIVSCPSCA
                     RQGFDVIRTVEKLEERLQHIRTPMSLSVLGCVVNGPGEARETDIGVTGGGAGKHMVYL
                     SGVTDHHVNDAEMIEHIVRLVEAKAAEIEAATPAQAA"
     gene            1802..2458
                     /locus_tag="VE567_07175"
     CDS             1802..2458
                     /locus_tag="VE567_07175"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYZ48658.1"
                     /translation="MPTMLIAGANRGIGLEFARQYAADGWHVIATARHPDSAGELTAL
                     PVELLPLDIADPASIAALAQRLSGRPIDLLIANAGVSGPRSLERDGWLATFATNSIGP
                     TLLADALKPNVAAGDGRKMIAITSRMGSIAETSGGFIPYRSSKAALNAAWRALSVEWQ
                     GEITLAMLHPGWVQTDMGGPNAAIDTHTSVAGMRKVIRDLSPERSGAFLAWDGAELAW
                     "
     gene            2523..>3190
                     /locus_tag="VE567_07180"
     CDS             2523..>3190
                     /locus_tag="VE567_07180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoaspartyl peptidase/L-asparaginase"
                     /protein_id="HYZ48659.1"
                     /translation="MIEQGVLTPAAEQGVRAGLAAALEAGAAVLRDGGPALDAVEAAV
                     RLLEDDPHFNSGRGSAFTFEGAIELDAAIMDGRARDAGAVTGVTRTRNPVSLARQVME
                     DSPHVLLSREGADTFSREKGLEQAEPDWFAIPERRDQLEELKAQGDGYFDVQMKYGTV
                     GAVARDKAGHVAAATSTGGVTGKRWGRIGDSPLIGAGTYADDRAGAVSATGSGEFFIR
                     AVAA"
BASE COUNT          518 a         1064 c         1114 g          494 t
ORIGIN      
        1 ggaaagcggc gaagggtgcg gggctttcag cactagatgc cttgagccat ccacgaacgc
       61 cgccttcttc tgcgcatggc tgccccagag caggaatacg accggctcgg cgcgggcgtt
      121 caccagccgg acgacggcgt cggtgaaccg ctcccagccg cgcccctggt gggaagcggc
      181 catgcccatc tcgacggtca gcacggcatt cagcagcagc acgccttgct gggcccaatg
      241 ctccaggaag ccgtggcggg cgggcggaat gccgagatcg ctctccagct ccttgtagat
      301 gttgacgagg ctcggcggga tgcgggtgcc gggccgaacg gagaagcaca ggccgtgcgc
      361 ctggccgggg ccgtgatacg ggtcttgccc caggatcacc acgcgcacgt cttcgagcgg
      421 cgtcagatcg agcgcgcgga accactcgcc gcccgccggg aagatgcgct tgcccgccgc
      481 cttttcggcc agcaggaatt gcttgagccc ggccatgtac ggatcggcga actcgccgcc
      541 caggggcgcg agccagctcg gatgcagctt gacgtctccc aacgagcccc cgcgcgcgat
      601 caggctgcct gggccggggt tgccgcttcg atctcggcgg ccttggcctc gaccagccgg
      661 acgatgtgct cgatcatctc cgcgtcgttc acatgatggt cggtgacgcc cgatagatag
      721 accatgtgct tgcccgcacc cccgccggtg acgccgatat cggtctcgcg cgcctcgccg
      781 gggccgttca cgacgcagcc aaggacggac agggacatgg gcgtgcggat atgctgcagc
      841 cgctcctcaa gcttctcgac cgtgcggatc acgtcgaagc cctggcgcgc gcagctgggg
      901 caggagacga tgcgcacgcc gcgattgcgg atgccgaggg ccttcaggat ctcgaagccg
      961 acgcgcactt cctcttccgg ctcggcggaa aggctcaccc ggatcgtgtc gccgatgccg
     1021 taccagagca aggagccgat cccgattgcg gatttgacgg tgccgccgat cagcccgccc
     1081 gcttccgtga tgcccaagtg cagcgggcag tcaacggcat cggcgagctg ctgataagcc
     1141 gcgaccgcaa ggaaaacgtc cgacgccttc accgcgacct tgtattcgtg gaaatcatga
     1201 tcctgcagca gcttgatatg atcgagcgcg gactcgacca gcgcctccgg gcaaggctcg
     1261 ccatattttt cgagcaaatc cttttcgagg ctgccggcat tgacgccgat gcggatcgcg
     1321 cagccattgg ccttggctgc ccgcacgact tccgccaccc gctcggacga gccgatattg
     1381 ccgggattga tgcgcaggca ggcagcgccc gcgtccgcgg cttccagcgc gcgcttgtag
     1441 tggaaatgga tgtcggcgac gagcggcacg cgggccgcgc gggcgatctg gcagaaagca
     1501 gccgtcgctt cggcggtggg gcaggagacg cggacgatat ccgcgcccgc ctcctcgcag
     1561 cggcggacct ggtcgatcgt cgctttcgca tcttcggtcg gcgtgttggt catggtctgg
     1621 acggtgacgg gcgcgtcgcc gcccaccggc acggtgccga ccatgatctg gcgcgatttg
     1681 cggcgcacga tatcgcgcca gggacgaacg gacatgagaa cctcgatcga gcgtttcgac
     1741 gccatatagc cattcgcgcc gggaacggcg ataggcgcac gcgagcaaat ggaggtgctt
     1801 catgccaaca atgctgatcg ccggcgccaa tcgcggcatc ggccttgaat tcgcccggca
     1861 atatgcggcc gatggctggc atgtgatcgc gaccgcccgg caccccgatt cggcgggcga
     1921 gctgaccgcg ctcccggtcg agttgctgcc gctcgacatc gccgaccccg cgagcatcgc
     1981 ggcgctggcc cagcggctga gcggccggcc catcgacctg ctgatcgcca atgccggcgt
     2041 cagcgggccg cgcagcctgg agcgcgatgg ctggctggcg accttcgcca ccaattcgat
     2101 cgggccgacc ttgcttgccg atgcactcaa gccgaacgtc gccgccggcg acgggcgcaa
     2161 gatgatcgcc atcaccagcc ggatgggcag cattgccgag acgagcggcg gcttcatccc
     2221 ctatcggtcc tcgaaggccg cgctgaacgc ggcctggcgc gctctctcgg tggaatggca
     2281 gggggagatc acgctcgcca tgctgcatcc cggctgggtt cagaccgaca tgggcgggcc
     2341 caacgctgcc atcgacacgc acaccagcgt cgccggcatg cgcaaagtga ttcgtgacct
     2401 ttcacccgag cgcagcggtg ccttcctggc atgggacggc gccgagctgg cgtggtgagc
     2461 caggctggag atcgaagttg aataatcccg attggacgct cgtcgtgcat ggcggcgcgg
     2521 gcatgatcga gcagggcgtg ctgacgcccg cggcggagca gggcgtgcgc gccggccttg
     2581 ccgccgcgct ggaggcgggc gcggccgtgc tgcgcgacgg cggcccggcg ctcgatgcgg
     2641 tcgaggcggc agtgcgcctg ctggaagacg atccccattt caattccggg cggggttcgg
     2701 ccttcacatt cgagggcgcg atcgagctcg acgccgcgat catggacggc cgcgcgcgcg
     2761 atgccggcgc ggtcaccggg gtcacgcgaa cccgtaatcc ggtcagcctc gcacggcagg
     2821 tgatggagga cagcccgcat gtgctgctga gccgggaagg cgccgatacc ttctcccgcg
     2881 aaaaggggct ggagcaggcc gagcccgact ggttcgccat tcctgagcgt cgggaccagc
     2941 tggaggagct gaaagcgcag ggcgacggct atttcgacgt gcagatgaaa tacggcacgg
     3001 tcggtgcagt cgcgcgggac aaagcggggc atgtcgccgc ggccacctcg accggcgggg
     3061 tgaccggcaa gcgctggggc cggatcggcg actcgccgct gatcggcgca ggcacctatg
     3121 ccgacgaccg cgcgggggcg gtctcggcga cgggatcggg cgagttcttc atccgcgccg
     3181 tcgccgcgca
//
LOCUS       DASQVK010000334         4961 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_439291,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000334 DASQVK010000000
VERSION     DASQVK010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4961)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4961)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4961
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_439291"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3302)
                     /locus_tag="VE567_07185"
     CDS             complement(<1..3302)
                     /locus_tag="VE567_07185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013846966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYZ48660.1"
                     /translation="MRNHLFVGAAVAALIAPAAVQAQETTSTIRGTVTENGAPVAGAA
                     VLAVHVPSGTRAATSTAADGSFTLTGLRPGGPYTVSVNGQQAQVTDIYTVLAQPYELP
                     IDLTAQGQDIVVTASNVQGARVVSEGPATVLNAEQIGKVASINRDIRDLMRRDPFANI
                     DKSSAVAAVSFAGQNPRFNRFTIDGVPITDSFGLNPDGLPSRRGPVPLDAIGQFETKV
                     APYDIREGFFQGGVVNAVLKSGTNEFHGTGFYSYLDDSMVGKQTKPYAGNATGKVTVP
                     PFKNEDYGFELSGPIIKDKLFFMISGERVRAASPYPYGTVEDNGGVPVTNLTNAQLSA
                     IVAAAKSRYNYDAGGIVRNNGDKDDRLVGRLDANLSDTQRLSLTGIYTKDELISLTNT
                     GTGTLSLESGSYIKPNTVYAGIAQLNSDWTDTFSTEFRGLYKQYDSGQIPRTARAAQV
                     TVCTAAASDRPGTGAGADTFNLATSCPTNVAQVQLGTGGPSQANELHIKTYGGSFVAR
                     LAAGEHNFRALFETQYTKTFNIFVNGALGTYYFDSIADFQAGNAQSFSYTNSPSLNPN
                     DAAAKFNYQVYTFGLQDNWRVSDQLNVSYGVRWDSYGGSTLPAFNPIFLNRYGLGNNA
                     YINGKELWQPRVGFDYTPTSRLTIRGGAGIFGGGTPDVYLGNSFSNTGVLSTTLTARL
                     SDQGRYQINGQGNPTGSDLLNNVNIQTVPAIANTLLSAQGTNLTANPNNTTTLNALDP
                     KFKIPSQWRATLSARWDADLGPLGDHWRFGLDGFYSKVRNQVAIVDLRSAPVTGSFTP
                     DGRQRYASVITAAPTDSGADYLLTNSDKGRSYVAVASVSKAWDFGLSANASFTYENVK
                     DNQAFTSSIANSNYSNGAYRDPNSLTGGYGHSNDEVPYSFKYNLSFDHAFFGDYRTRI
                     DLFGETRQGYNYSWGFQDVSSGRSSVFGTVASSSRYLFYVPKVNDPLVTYKDTATQTS
                     VENLINSTSLKDYRGKIAPRNAFHSKWFTRLDLHVEQELPVPGWSQSRVTVFADIENF
                     TNLINHDWGQQLRANFPYIKTVVKVACVAQGTNSCAQYQYSSPTSDLTRADSLVNGSL
                     GASLYAIRVGAR"
     gene            3514..4635
                     /gene="queG"
                     /locus_tag="VE567_07190"
     CDS             3514..4635
                     /gene="queG"
                     /locus_tag="VE567_07190"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010122957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0052693 - epoxyqueuosine reductase
                     activity [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HYZ48661.1"
                     /translation="MTAFLLARRLKEEAARIGFAACGIARADAAPLAGARLRAWLADG
                     AHGDMIWMESRADQRAAPAALWPEVHSVIALGMSYAPAEDPLRLADACETGRISVYAQ
                     GADYHDLVKRKLKELARWLVAEAGGDLKVFVDTAPVMEKPLAEAAGLGWQGKHTNLVS
                     RAHGSWLFLGAIFTTLELPPDAPGKERCGSCDACQRACPTDAFPAPFRLDARRCISYL
                     TIEHQGPIPADLRPGIGNRIYGCDDCLAVCPWNKFAQAASANLAFAPRAELAAPLLAD
                     LLQLDDAGFRQLFAGSPIKRIGRDRMIRNCLIAAGNSESGVLVGRVLPHLDDPNPVVR
                     GAAAWALGRLDRARALGEKAQRLPVEQDASVAGEWLSVQ"
     gene            complement(4648..>4961)
                     /locus_tag="VE567_07195"
     CDS             complement(4648..>4961)
                     /locus_tag="VE567_07195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HYZ48662.1"
                     /translation="LANRLGRLVDAGILTREPCPEDRRKIEYRLTEKGLDLLPTMIAL
                     RQWGEKWETCTPSNPVLVDKRDLLPVADVRVHAHDGRPLKWEDLSFRWREELEQAHAA
                     E"
BASE COUNT          819 a         1528 c         1676 g          938 t
ORIGIN      
        1 aagcgagcac cgacgcggat cgcgtatagc gaggccccga ggctgccgtt gaccagcgag
       61 tcagcgcgcg tcaggtccga tgtcggcgac gagtactgat actgggcgca gctgttcgtc
      121 ccctgcgcga cgcacgccac cttcacgacc gtcttgatgt acgggaagtt ggcgcggagc
      181 tgctggcccc aatcatgatt gatcaggttc gtgaagttct cgatgtccgc gaacaccgtc
      241 acgcgcgact ggctccagcc cggcaccgga agttcctgct cgacgtgcag gtccaaacgg
      301 gtgaaccatt tcgagtggaa ggcgttacgc ggcgcaatct tgccgcgata gtccttcaag
      361 ctcgtcgagt tgatcaggtt ttcgaccgag gtctgcgtgg cggtgtcttt ataggtgacg
      421 agcggatcgt tcaccttcgg aacatagaac aggtaccggc tggaagacgc gaccgtgccg
      481 aacaccgagc tgcggcccga gctcacatcc tggaagcccc agctatagtt atagccttgg
      541 cgcgtttcgc caaacaggtc gatccgggtc cgatagtcgc cgaagaaggc atgatcgaac
      601 gaaaggttgt acttgaacga gtacggaacc tcgtcgttcg aatggccgta accgccggtc
      661 aggctgttcg gatccctata ggcgccgttg ctgtagttcg agttcgcgat cgacgatgtg
      721 aaggcctggt tgtccttcac attctcgtag gtgaagctcg cattggcgct caggccgaag
      781 tcccacgcct tgctgacgct ggcgacagcg acatagctgc ggcccttatc ggagttggtg
      841 agcagatagt ccgcgccgct gtcggtcggg gcggcagtga tcacgctggc atagcgctga
      901 cggccatccg gcgtgaagga gcccgtaacc ggcgccgagc gcaagtcgac gatcgcgacc
      961 tggttgcgga ctttcgaata gaagccgtcc agcccgaagc gccaatgatc gccgagcggc
     1021 ccaaggtcgg catcccagcg tgccgacagg gtcgcacgcc actgggacgg gatcttgaac
     1081 ttcggatcga gcgcgttgag cgtcgtcgtg ttgttcggat tggcggtcag attggtgccc
     1141 tgggccgaga gcagcgtgtt ggcgatcgcc ggcaccgtct ggatgttcac gttgttcagc
     1201 aagtccgaac cggtcgggtt gccctggccg ttgatctgat accggccctg atcgctgagg
     1261 cgcgcggtca gcgtcgtcga gagcacgccg gtgttcgaga agctgttgcc gagatagacg
     1321 tcgggcgtgc cgccgccgaa aatgcccgcg ccgccgcgga tcgtcaggcg cgatgtcggc
     1381 gtatagtcga acccgacgcg cggctgccaa agctccttgc cgttgatgta cgcgttgttt
     1441 ccgagcccgt agcgattcag gaagattgga ttgaaagccg ggagagtgct gccgccatag
     1501 ctgtcccaac gtacgccata ggagacgttg agctggtcgc tgacccgcca attgtcctgc
     1561 aggccgaacg tatagacctg atagttgaac tttgcggccg cgtcgttcgg attgagcgac
     1621 ggcgaattgg tatagctgaa cgactgcgcg ttgccggcct ggaagtcggc gatcgagtcg
     1681 aaataatagg tgcccagagc gccgtttacg aagatgttga aggtcttcgt gtactgggtc
     1741 tcgaagagcg cccggaaatt gtgctcgccc gctgccagcc gcgcgacgaa cgacccgcca
     1801 taggtcttga tgtgcagctc gttggcctgg ctggggccgc ccgtgccaag ctggacctgc
     1861 gccacgttgg tcgggcacga ggttgcaagg ttgaacgtgt cggcgccagc gccggtgccg
     1921 ggacgatccg aggcggccgc ggtgcaaacg gtcacctgcg cggcgcgtgc cgtgcgcgga
     1981 atctggcccg aatcatattg tttgtagagg ccgcggaatt cggtcgagaa ggtatcggtc
     2041 cagtccgaat tgagctgggc gatgccggca tagaccgtgt tcggcttgat gtacgagccc
     2101 gactccaggc tcaaggtgcc ggtgcccgtg ttggtcaagc tgatcagctc gtccttggtg
     2161 taaatgccgg tcagcgacag acgttgggtg tcgctaaggt tcgcgtcgag gcgaccgacc
     2221 aggcggtcgt ccttgtcgcc gttgttccgc acgatgcctc cggcatcata attatagcgg
     2281 ctcttggcgg cggcgacgat cgcgctcagc tgcgcgttgg tcaggttggt gaccgggacg
     2341 ccgccattgt cctcgaccgt gccgtagggg taaggcgaag cggcgcgaac gcgctcgccg
     2401 gaaatcatga agaagagctt gtccttgatg atcgggccgg aaagctcgaa gccgtaatcc
     2461 tcgttcttga acggcggcac cgtgaccttc ccggtggcgt tgccggcata gggcttcgtc
     2521 tgcttgccga ccatgctgtc gtcgagatag ctgtagaagc cggtaccgtg gaactcgttc
     2581 gtgcccgact tcaacacggc attgacgacg ccgccctgga aaaacccttc gcggatatcg
     2641 tacggcgcga ccttggtctc gaactggccg atcgcgtcga gcggcacggg cccgcggcgc
     2701 gacggcagac cgtcggggtt gaggccgaag ctgtcggtga tcggaacgcc gtcgatggtg
     2761 aagcggttga agcgcgggtt ctggcccgcg aagctgaccg cggcaaccgc gctgctcttg
     2821 tcgatatttg cgaacggatc gcgccgcata aggtcgcgga tgtcgcggtt gatcgacgcg
     2881 accttgccga tctgctcggc attgaggacc gtcgccggac cttccgaaac gacgcgtgcg
     2941 ccctggacgt tcgacgcggt gacgacgatg tcctggccct gggccgtcag atcgatcggg
     3001 agctcataag gctgggccag caccgtgtag atgtcggtca cctgggcctg ctggccgttg
     3061 acgctcacag tgtaagggcc gcccggacgc aagccggtca gagtgaagct gccgtcggcg
     3121 gccgtggacg tggccgcgcg cgtgcccgac gggacgtgga ccgcgaggac ggcggcgccg
     3181 gcaaccggcg cgccgttttc cgtcaccgtg ccgcgaatgg tcgaagtggt ttcctgcgcc
     3241 tgaacggctg caggcgcgat gagcgcggcc acggccgcgc cgacgaacag atgattacgc
     3301 attgctttcc ccaattgtct gcccaggtag ggcggcgacc tctcgcggcc gaattgaccg
     3361 tcgggcggcg cctctcgact gcttctgttg caaatctgtg actcgggggc cgggctggcg
     3421 ccctgcgcct tcaacattct ttgtgcgttg caaaaaagcc acgctcggcg gcatgttcgc
     3481 gggcgccccc ggcgactata tattcctcgt ccgatgacag ccttcctgct tgcccgacgc
     3541 ctcaaggaag aggccgcgcg catcggcttt gccgcctgcg gaatcgcgcg cgccgacgcg
     3601 gctccgcttg ccggagcgcg gctgcgcgcc tggctggccg atggcgcgca tggcgacatg
     3661 atctggatgg aaagccgcgc cgatcagcgc gccgctcctg ccgcgctctg gcccgaggtc
     3721 cactcggtaa tcgcgctggg gatgagttac gccccggccg aggatccgct ccgacttgcc
     3781 gatgcctgcg agaccggccg catttcggtc tatgcccagg gcgcggatta tcacgatctc
     3841 gtgaagcgca agctgaagga actggcgcgc tggctcgtgg ccgaggcggg gggcgacctc
     3901 aaggttttcg tcgatactgc accggtgatg gaaaagccgc tggccgaagc ggccgggctc
     3961 ggctggcaag gcaagcacac gaatctggtt agccgcgcac atggcagctg gctgtttctg
     4021 ggtgcgatct tcacgacgct ggagctgccg ccggacgcgc cggggaaaga gcggtgcggc
     4081 agctgcgatg cctgccagcg cgcctgcccg accgacgctt tccccgcgcc gttccggctc
     4141 gatgcccgcc gctgcatttc gtatctgacg atcgagcacc agggcccgat tcccgccgat
     4201 cttcggcccg gcatcggcaa tcggatctat ggctgcgacg attgcctcgc ggtctgcccg
     4261 tggaacaagt tcgcacaggc tgcgtccgcg aacctcgctt tcgcgccgcg cgccgaactc
     4321 gccgcgccgc tgctcgccga tctgctccag ctcgacgatg ccggcttccg ccagctcttc
     4381 gccggctcgc ccatcaagcg aatcggccgc gaccggatga ttcgcaattg cctgatcgcg
     4441 gcggggaata gcgagtcagg cgtgctggtt ggccgcgtgc ttccccacct cgatgatccc
     4501 aatccggtgg tgcggggtgc ggcggcctgg gcgctggggc ggctggaccg ggcgcgggcg
     4561 ctcggggaaa aggcgcagcg gcttccggtg gaacaggatg cgtcggtagc aggcgaatgg
     4621 ctttcggtcc aatgaccggc aggcggctta ttccgccgcg tgggcctgtt ccagctcttc
     4681 gcgccaccga aagctcagat cctcccattt gagcggccgc ccgtcatgtg cgtggacgcg
     4741 cacatcggcg accggcagca agtcgcgctt gtcgaccagc accgggttgg acggcgtgca
     4801 cgtctcccat ttctcgcccc attggcgcag cgcgatcatg gtcggcagca ggtccaggcc
     4861 cttttccgtc agccgatatt cgattttacg gcgatcttcg gggcagggct cgcgcgtcag
     4921 aatcccggca tccaccagcc ggccgagccg gttggcgagg a
//
LOCUS       DASQVK010000335         3118 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_211140,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000335 DASQVK010000000
VERSION     DASQVK010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3118
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211140"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..478)
                     /locus_tag="VE567_07200"
     CDS             complement(<1..478)
                     /locus_tag="VE567_07200"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016745911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HYZ48663.1"
                     /translation="MAFSFRTLFRALAAILISFALLVRPVAAQSVLRDAETESWLQDI
                     SRPLVAAAGLDPRNVQIVLLYDNTINAFVAGGQIVYIHSATLTEADNTDMVQGVIAHE
                     LGHVVGGHVVRMAEGAKAATGVMLLSLLLGAAAIAAGAGDAGAGVLMAGQRAAMGKF"
     gene            complement(590..1141)
                     /locus_tag="VE567_07205"
     CDS             complement(590..1141)
                     /locus_tag="VE567_07205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48664.1"
                     /translation="MGSKVGPAAGAMALVEMKEFAGFPAGTQRYIRRSLDIGLEREDA
                     IKLWSRDMVEAASIKAQTKMYERLDEIRALVPDDSGLDAVEPFLTPLVTLSAFDLGQD
                     RLDSFSAYRFLYERLIGPSVRPWLPSSFCAAAALPHLHPDKRRKLLQSISEAAATAPG
                     WSTRSPAFYPQWVDKVDTSTAAN"
     gene            complement(1305..1568)
                     /locus_tag="VE567_07210"
     CDS             complement(1305..1568)
                     /locus_tag="VE567_07210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48665.1"
                     /translation="MAGIGTQDTLRDERQDAGRDPSIEKRLKRDPFDPDAKVDAGSDQ
                     SMDASDPPAAAAPGSQEPAPSSGYDEAAEAEAQRANDQDDGQG"
     gene            1721..2836
                     /locus_tag="VE567_07215"
     CDS             1721..2836
                     /locus_tag="VE567_07215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013039611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HYZ48666.1"
                     /translation="MKDECGDRRRSRVGLEVAVYSILGFWFFYVTIATTQSLIVGWDN
                     QMELAQRRLGVTVAGIALTFLLYAILRRVDDRSFGERIAVAFIGAVPCAIGVGLVNYY
                     LFNTYKPELLYRDPDMLREMAQHPYLLKNVAEIAVSRYFFLIAWAALYLAISYAAETR
                     EAERRVAAFAQTAKEAEIRALRYQVNPHFLFNTLNSLSSLVMTGRTAEAEAMIMNLST
                     FYRTSLSGDPMDDVPLAEEVRLQRLYLDIEAVRFPDRLITEIDVPEELMQLCVPGLIL
                     QPLVENAIKYGVSRANRPVTISIVARRERGKLVLTISDDGKGPAEPGEHGTGVGLANV
                     RDRLHARFGSKAGLVTHAPKGGGFVVTLAMPEVGNGC"
     gene            2887..>3118
                     /locus_tag="VE567_07220"
     CDS             2887..>3118
                     /locus_tag="VE567_07220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYZ48667.1"
                     /translation="MSSDQNSPVRTLIVDDEPLAIERLQVLCAREPLVDLVGTASDGQ
                     AALRMAEALRPELLLLDISMPELDGMGVARALG"
BASE COUNT          508 a         1026 c         1010 g          574 t
ORIGIN      
        1 ggaacttgcc catcgcggcc cgttggccgg ccatcagcac gcccgcgccg gcatcgcccg
       61 cacccgcggc aatggctgca gcaccgagca ggagcgacag cagcatcacg ccggtcgcgg
      121 ccttggcacc ctcggccatg cgcacgacat ggccgccgac gacgtgaccg agctcgtgcg
      181 cgataacgcc ttgcaccatg tcggtattgt cggcctcggt cagcgtcgcc gaatggatat
      241 agacgatctg gccccccgcc acgaacgcgt tgatcgtgtt gtcatacagc agcacgatct
      301 gcacgttgcg cggatcgagc ccggcggcgg ccacgagtgg gcgcgaaatg tcctggagcc
      361 acgattcggt ctcggcgtcg cgcagcaccg attgggcggc caccgggcgg acgagcagag
      421 cgaaggaaat gaggatcgcg gccagcgcgc gaaacagggt ccggaagctg aaagccatta
      481 cgccgcctca tctccgcgcg tcgatgaacg ccgggtgaag gcccggcgcg ccttgtctaa
      541 acctggcggc ggcgggcgaa cagtgccgat tctcctcggc gtcgccggtt cagttggccg
      601 cggtgctggt gtccaccttg tccacccatt gcgggtagaa ggccggcgag cgggtcgacc
      661 agccaggcgc cgtcgccgcg gcttcgctga tcgactggag cagcttgcgc cttttgtccg
      721 gatgaaggtg gggcagcgcc gcggcggcgc agaaggagct tggcagccag gggcgcacgc
      781 tcggcccgat gagccgctcg taaaggaatc gataggccga gaagctgtcg agccggtctt
      841 gccccaggtc gaaagccgag agcgtcacga gcggggtcag aaacggctcg accgcgtcga
      901 gaccgctatc gtcgggcacg agcgcgcgga tctcgtccag ccgctcgtac atcttggtct
      961 gcgccttgat gctggccgcc tcgaccatgt cgcgcgacca cagcttgatc gcatcttccc
     1021 gctccagccc aatatcgagc gagcggcgga tatagcgctg cgttccggca ggaaatcctg
     1081 caaattcctt catttcgacc agggccatcg cgcctgcggc gggaccgacc ttgctgccca
     1141 tgactctctt ctccgacctt tgcccgttaa cccatgcgcc tccggtgctt tctgccccgt
     1201 taactgcatg ggccccgaca ggatcggatc agaatccttg ctgcaaagca acatgggttg
     1261 cgacgaacag gcggcgttcg cgcaaaaagc cgtggataag cggcttatcc ttggccgtcg
     1321 tcctggtcgt tggcgcgctg cgcctccgcc tcggcggctt cgtcatagcc ggacgacggc
     1381 gccggctcct ggctgcctgg cgccgcggcc gccggcggat cggacgcgtc catcgattgg
     1441 tcggagcccg catccacctt ggcgtccggg tcgaacggat cgcgcttcag ccgcttttcg
     1501 atcgacgggt cgcggccggc gtcttggcgc tcgtcccgca gcgtatcttg agttccgatg
     1561 ccagccatgg gatcactcca gcctgatgcc tgtagacgca accgtaacga atgagggggg
     1621 cggcggtttc ctgccgccgt tcgatgaacc cgcccctccc ttcgacggac gccaggactc
     1681 gcggtcgtct tcaagccttt ggagcgttaa gacgggcacg atgaaagatg aatgcggcga
     1741 ccgccggcgc agccgtgtcg gtctggaggt cgcggtctat tcgatactgg gtttctggtt
     1801 tttctacgtt accatcgcga cgacccagtc gctgattgtc gggtgggaca accagatgga
     1861 gctcgcacag cgccgcctcg gagttaccgt tgcgggcatt gctttgacgt tcctgctgta
     1921 cgcgatcctc cgccgcgtcg acgaccgttc gttcggcgag cgcatcgccg tcgcctttat
     1981 cggcgccgtc ccttgcgcga tcggcgtggg gctcgtgaat tactatcttt tcaacaccta
     2041 caagcccgag ctgctctatc gcgacccgga catgctgcgg gaaatggcgc agcatcccta
     2101 tctgctgaag aacgtcgccg aaatcgccgt ctcgcgctat ttcttcctga tcgcctgggc
     2161 ggcgctgtat ctcgccattt cctacgccgc cgaaacgcgc gaggcggagc gccgcgtcgc
     2221 cgccttcgcc cagacggcca aggaggccga gatccgggcg ctgcgttatc aggtcaatcc
     2281 gcacttcctg ttcaacacgc tgaactcctt gtcttcgctg gtgatgaccg gccgcaccgc
     2341 cgaggccgaa gcgatgatca tgaacctctc gaccttctac cgcaccagcc tctcgggcga
     2401 ccccatggac gatgtgccgc ttgccgagga agtgcggctg caacgcctct atctcgatat
     2461 cgaggcggtg cgcttccccg atcggctgat aaccgagatc gatgtgcccg aggagctgat
     2521 gcagctttgc gtgccggggc tgatcctcca gcctctggtc gagaatgcga tcaaatacgg
     2581 cgtgtcgcgc gccaatcggc ccgtcaccat ctcgatcgtc gcgcgcaggg agcgcggcaa
     2641 gctggtcctt acgatctccg acgatggcaa gggccctgcc gagccgggcg agcacggcac
     2701 cggcgtcggg cttgcgaatg tccgcgatcg gctgcacgca cgcttcggga gcaaggcagg
     2761 gctggtgacg cacgcgccga aaggcggcgg cttcgtcgtg actctggcga tgcccgaggt
     2821 agggaatgga tgctgagccg tatcgtgttg gatcgaggtc cctcttcccg ttcgtagagt
     2881 aatctcatga gttcggacca aaactctcca gtcagaacgc tgatcgtcga cgacgagccg
     2941 ctggcgatcg agcgcttgca ggtcttgtgc gcgcgcgagc cgctggtgga ccttgtcggc
     3001 acggcgtccg acggacaggc ggcactgcgc atggcagagg cgctgcggcc ggagctgctg
     3061 ctgctggaca tttccatgcc cgaactcgac ggcatgggcg tcgctcgcgc gctcggcg
//
LOCUS       DASQVK010000336         2046 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_211188,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000336 DASQVK010000000
VERSION     DASQVK010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211188"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..773)
                     /locus_tag="VE567_07225"
     CDS             complement(<1..773)
                     /locus_tag="VE567_07225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010337444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HYZ48668.1"
                     /translation="MSAPVLTSAVQHDSDQYRARTAHNRKLAEELRARVATAALGGNE
                     KARAKHTERGKLLPRDRVERLLDPASPFLEIGQLAACDMYHGEVPGAGLIAGIGRVSG
                     RQVMIVCNDATVKGGTYYPMTVKKHLRAQEIAEQNRLPCVYLVDSGGANLPHQAEVFP
                     DRDHFGRIFFNQANMSAQGIPQIACVMGSCTAGGAYVPAMSDETVIVRNQGTIFLAGP
                     PLVKAATGEVISAEDLGGGDLHGRKSGVVDHVAENDEHAL"
     gene            complement(770..1933)
                     /locus_tag="VE567_07230"
     CDS             complement(770..1933)
                     /locus_tag="VE567_07230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008832164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isovaleryl-CoA dehydrogenase"
                     /protein_id="HYZ48669.1"
                     /translation="MSTATPDFDFQLGEHAEMIRDTTRRFADERIQPIAARIDAEDWF
                     PKELWPEMGALGLHGITVDEADGGLGLGYLEHVIAVEEVSRASASIGLSYGAHSNLCV
                     NQIRRWATEEQKAKYLPKLISGEHVGSLAMSEAGAGSDVVSMKLRADAVQGGYVLNGT
                     KFWITNAAYADTLVVYAKTGEGSRGITAFLIERDMPGFSIGQKIDKMGMRGSPTAELV
                     FDDCEVPEENVMGPLNGGVGVLMSGLDYERAVLSGVQLGIMQACLDTVIPYVRERKQF
                     GKPIGTFQLMQAKIADMYVALQSARAYVYAVAKNCDAGRTTRFDAAGAILLASESAVR
                     VSLEAIQALGGAGYTKDWPVERYARDAKLLDIGAGTNEVRRMLIGRELIGGGA"
BASE COUNT          351 a          670 c          657 g          368 t
ORIGIN      
        1 agcgcatgct cgtcattctc ggcgacatgg tcgacgacgc ccgatttgcg gccgtgcagg
       61 tcgccgccgc ccagatcctc cgccgaaatc acttcgcccg tcgccgcttt caccagcggc
      121 ggaccggcga ggaagatcgt gccctggttg cgcacgatca ccgtctcgtc ggacatggcg
      181 gggacataag cgccgccggc cgtgcacgaa cccatgacgc aggcgatctg cgggatgccc
      241 tgggccgaca tattcgcctg gttgaagaag atgcggccga aatggtcacg atcggggaag
      301 acctccgcct gatgcggcag gttggcgccg cccgaatcga ccagatagac gcaaggcaga
      361 cggttctgct cggcaatttc ctgcgcgcgc agatgcttct tgacggtcat cggataatag
      421 gtgccgcctt tgacggtcgc gtcgttgcag acgatcatga cctggcggcc ggaaacgcgg
      481 ccgatcccgg cgatcaggcc cgcgcccggc acttcgccgt gatacatatc gcaggcggca
      541 agctggccga tctcgaggaa aggcgaggca ggatcgagca gccgctcgac gcggtcgcgg
      601 ggcaggagct tgccacgctc ggtgtgcttc gcccgcgcct tttcgttgcc gcccagcgcg
      661 gccgtggcca cccgcgcgcg cagctcctcg gcgagcttcc tgttgtgcgc cgtgcgagcg
      721 cggtattggt ccgaatcatg ctgaacagca gacgtcagga cgggagcgct caagcgccac
      781 ccccgatcag ctcgcggccg atcagcatgc ggcggacttc gttggtgccc gcgccgatgt
      841 cgagcagctt ggcgtcgcgg gcgtagcgtt cgaccggcca gtccttggtg tagccggcgc
      901 cgcccagcgc ctggatcgct tccagcgata cgcgaacggc gctctcgctc gcgaggagga
      961 tcgcgccggc tgcgtcgaag cgcgtcgtgc ggccggcgtc acaattcttg gcgacagcat
     1021 agacgtacgc ccgggcggat tgcagagcga cgtacatatc ggcaatcttg gcctgcatga
     1081 gctggaacgt gccgatcggc ttgccgaact gctttcgttc gcggacatag ggaatgaccg
     1141 tgtccaggca ggcctgcatg atgccgagct ggacgcccga gagcaccgcg cgctcgtaat
     1201 ccagaccgga catcagcacg ccaacaccgc cgttgagcgg ccccatcaca ttttcttcgg
     1261 gcacttcgca gtcgtcgaag accagttcgg cggtcggcga gccgcgcatg cccatcttgt
     1321 cgatcttctg gccgatcgag aaaccgggca tgtccctctc gatcaggaaa gccgtgatgc
     1381 cgcggctccc ctccccggtc ttcgcataga cgacgagcgt gtcggcatag gcagcgttgg
     1441 tgatccagaa tttggtgccg ttcagcacat agccgccctg tacggcatcg gcgcggagct
     1501 tcatcgagac gacgtcggag ccagcaccgg cttccgacat tgcgaggctg ccgacatgct
     1561 cgcccgaaat gagcttgggc agatatttgg ccttctgctc ctcggtcgcc caacgccgga
     1621 tctggttcac gcacaggttc gagtgtgcgc cgtagctaag accgatcgac gcggaggccc
     1681 ggctgacttc ctcgaccgca atgacgtgct ccagatagcc aagccccagc ccgccatccg
     1741 cctcgtccac ggtgatgcca tgcaggccca gtgcgcccat ttcgggccag agctccttgg
     1801 gaaaccagtc ctcggcatcg atgcgcgcgg cgatgggctg gatgcgctca tcggcgaagc
     1861 ggcgcgtcgt gtcgcggatc atctcggcat gttcgccgag ctggaaatcg aaatcgggcg
     1921 tggctgtgct cataggttcg ctcttttcga ggcgcgccgg cctgtctctc cggccccaag
     1981 ctctagcgca acctcaagca gcggcatatt tgaaagaggc gcaggcatat catagacggt
     2041 gtctat
//
LOCUS       DASQVK010000337         2355 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_21510, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000337 DASQVK010000000
VERSION     DASQVK010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2355
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21510"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..91)
                     /locus_tag="VE567_07235"
     CDS             complement(<1..91)
                     /locus_tag="VE567_07235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010404316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acireductone synthase"
                     /protein_id="HYZ48670.1"
                     /translation="MRAILTDIEGTTSSIAFVTETLFPYARARL"
     gene            complement(91..588)
                     /locus_tag="VE567_07240"
     CDS             complement(91..588)
                     /locus_tag="VE567_07240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010187674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HYZ48671.1"
                     /translation="MTRLTIFDETGAELRRTDAAEEIAVELAGIGVRFERWPAEGAAA
                     RVEALKAEGYTTIDTISMAPDHPDRETMRGKFLSEHRHAEDEVRFFVKGEGLFTLREG
                     GQVYAVLCEGGDLISVPAGMRHWFDMGPRPDFTAMRFFRTPEGWVGDFTGDPIAERFP
                     RLEPA"
     gene            complement(585..1169)
                     /gene="mtnB"
                     /locus_tag="VE567_07245"
     CDS             complement(585..1169)
                     /gene="mtnB"
                     /locus_tag="VE567_07245"
                     /EC_number="4.2.1.109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010404311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016835 - carbon-oxygen lyase activity
                     [Evidence IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylthioribulose 1-phosphate dehydratase"
                     /protein_id="HYZ48672.1"
                     /translation="MIFEEAAEALIAVGCAFAARGWAPATSGNYSARLDDGRIAITVS
                     GTHKGRLTPGDIMLLDSGDPRRPSAETALHRVIYRAFPETGCVLHSHAAVSVALGRAR
                     GAAWVIEGHELLKALPGIATHEVRISIPIVENSQDMAEIEAAAMPQLSSVPAFMIRSH
                     GLYGWGRDVAEAERVIEALEWLAECELAERSFRA"
     gene            complement(1166..1753)
                     /locus_tag="VE567_07250"
     CDS             complement(1166..1753)
                     /locus_tag="VE567_07250"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010403574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HYZ48673.1"
                     /translation="MKFLVFYGSYRRDRAGIRLARFAVAELGKRGHEVELIDAQEVGL
                     PMLDRMFKEHAPGTAPANMAELAGKIRAADGFVFVTGEYNWGIQPGLKNLTDHFLEEW
                     FWRPAGILSYSAGRFAGARSGLIWHGTLSEMGMVVISSTVAVGQITASLDEASAPLGE
                     GGAALAKAFPRFAADLEWWAEAAQAQKARKAPPYQ"
     gene            1817..>2355
                     /locus_tag="VE567_07255"
     CDS             1817..>2355
                     /locus_tag="VE567_07255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010187680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYZ48674.1"
                     /translation="MNPLYASMPTTIFEHMSARARETGAINLGQGFPDSNGPADVVEA
                     AARALAERSNQYPPMAGLPELREAVAAHYRRHQGLDLAPAEVTVTSGATEALAAAILA
                     LVSPGDEVVLFQPLYDAYLPLVRRAGGVPRLVRLAPPDWRITAAVLDAAFTERTRLVI
                     LNTPLNPTATLATAEELAL"
BASE COUNT          367 a          908 c          706 g          374 t
ORIGIN      
        1 ggagccgcgc ccgcgcatag ggaaacaagg tttcggtcac gaaggcgatg ctgctcgtcg
       61 tgccttcgat atcggtgagg atcgcgcgga tcacgccggc tccagccgcg ggaaacgctc
      121 tgcgatcggg tcgcccgtga aatcgccgac ccagccctcc ggcgtgcgga agaagcgcat
      181 cgccgtgaaa tccgggcgcg ggcccatgtc gaaccagtgg cgcatgccgg ccggcaccga
      241 gatcaggtcg ccgccttcgc agagcacggc gtagacctgc ccgccctcgc gcaaggtgaa
      301 cagcccctcg cctttcacga agaagcgcac ttcatcctcg gcgtgccggt gctccgacag
      361 gaatttgccg cgcatcgttt cccgatcggg atggtccggc gccatcgaaa tagtatcgat
      421 cgtcgtatag ccctcggcct tgagcgcctc gacccgcgcc gcggccccct cggccggcca
      481 gcgctcgaac cgcacgccga tcccggccag ttccaccgca atctcctcgg cggcgtccgt
      541 gcggcgcagt tccgcgcccg tttcatcgaa tatcgtcagc cgcgtcatgc cctgaaactc
      601 cgctccgcca gctcgcattc cgcgagccat tccagggcct cgatcacgcg ctcggcctcg
      661 gcgacgtcgc gtccccagcc atatagccca tggctgcgga tcataaaggc cggcacggag
      721 ctcagctgcg gcatcgccgc cgcttcgatc tcggccatgt cctggctgtt ctcgacgatc
      781 gggatcgaga tccgaacctc gtgcgtcgcg atcccgggca gcgccttcag cagctcatgc
      841 ccctcgatta cccacgccgc cccgcgcgcc cggccgagcg ccacggagac ggcggcatgg
      901 ctgtgcagca cgcagccggt ctcaggaaag gcgcggtaga tgacgcggtg cagcgccgtc
      961 tccgccgatg gccggcgcgg atcgcccgaa tcgagcagca tgatgtcgcc gggcgtcagc
     1021 cgccccttgt gcgtgcccga gacagtgatc gcgatccgcc cgtcgtccag ccgcgccgaa
     1081 taattgcccg acgtcgccgg cgcccagccg cgcgcggcga aggcgcagcc gaccgcgatc
     1141 agcgcctctg ctgcttcctc gaaaatcatt gatagggcgg cgcctttcgc gccttttggg
     1201 cctgcgcggc ttccgcccac cattcgagat cggcggcaaa gcgcggaaag gctttcgcca
     1261 gcgcggcccc gccttcgccc aggggcgcgg atgcctcgtc cagcgacgcc gtgatctgcc
     1321 cgaccgcgac cgtgcttgag atcaccacca tccccatctc cgaaagcgtc ccgtgccaga
     1381 tcaggcccga gcgcgcgcct gcgaaccgcc ccgccgaata gctgaggatg cctgccggcc
     1441 gccagaacca ttcctccaga aaatggtcgg tcaggttctt gaggcctggc tggatgcccc
     1501 aattatattc gccggtcacg aacacgaacc catccgccgc ccgaatcttg cccgcaagct
     1561 cggccatgtt cgcgggcgcg gtgcccggcg cgtgttcctt gaacatacgg tcgagcatcg
     1621 gcagcccgac ttcctgcgcg tcgatcagct cgacctcatg gccgcgcttg cccagctccg
     1681 ccaccgcaaa tcgcgcgagg cggatgccgg ctcggtcgcg gcgataggaa ccgtagaaga
     1741 cgagaaactt catcggctcg ccctaatcgc tcggccggcg cttgtcgaag ccctcccttt
     1801 cttttctaag gcccgcatga acccgctcta cgcgtccatg ccgaccacga tcttcgagca
     1861 tatgtcggcg cgcgcccgcg aaaccggcgc gatcaatctg ggccaaggct ttcccgattc
     1921 gaacggcccg gccgatgtcg tcgaggccgc cgcccgcgcg cttgccgagc gttccaacca
     1981 atatccgccg atggccggcc tgcccgagct gcgcgaagcg gtcgccgcgc attatcgccg
     2041 gcaccagggc ctcgacctcg cgcctgccga agtcaccgtc acctcgggcg cgaccgaggc
     2101 gctcgccgcc gcgatcctcg cgctggtgtc gcccggcgac gaagtcgtgc tgttccagcc
     2161 gctctacgac gcctacctcc cgctcgtccg ccgcgccggc ggcgtgccgc gcctcgtccg
     2221 cctcgcgccg cccgactggc ggatcaccgc ggccgtgctc gacgccgctt tcaccgaacg
     2281 cacgcgcctc gtcattctca acaccccgct caaccccacc gcaaccctcg ccacggccga
     2341 ggaactcgcc ctcat
//
LOCUS       DASQVK010000338         2526 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_368980,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000338 DASQVK010000000
VERSION     DASQVK010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2526
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368980"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1931)
                     /locus_tag="VE567_07260"
     CDS             complement(<1..1931)
                     /locus_tag="VE567_07260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYZ48675.1"
                     /translation="MKSLYWAGALSALAAAVPAYADEPPATIIVTGQRAASEAETLAR
                     PGGTDLVTADDYRAKAAVSLRDALAFSPGVYAQPRFGQEVRLSIRGSGVSRGFHMRGL
                     TLLQDGVPINLADDNGDFQELDPAIFEVIQVFRGANALRFGGSTLGGAINGVTPTGRS
                     APGLNLRADGGSFDSFRGKLAAGFESGPGDGWVALTGDTSDGDRDHAHRNALRLNANV
                     GLKLSDTVETRFYGSGQMLRQELPGTLPIATVLTRPGTGNSFNNQQRNIDSLRLQNRT
                     TVALGDARLELGGFLNAKELDHPIYQYIDQVSTDYGAFGRLSYAQGPLGLTVGTTARF
                     GTVASKRFANVDGHKGALMFNAHQRAQTIDVYGESRYAIGQLSLIAGGIYTHAERRQR
                     QTFPMPAFGEAGYDQFSPRLGLLWAPRDALQVYANYSRSHELPGFIELAQLSNFVPLK
                     AQRAWTAEIGARGTLGPARFDIAFYRATVRGEMLQYNVDPAGGFPVSTFNANRTLHQG
                     IEAGLDLSLAPWARLRQAYQFNDFRFREDAKYGDNRLPVIPKHLYRAELRLGGEALNV
                     APSLEWLPQEAWADYANTFRPGGYVLVGATAEAQLRPGLSLFVDARNLTNRKQVGDIS
                     AVVNYSALTDAQRAIFYPV"
     gene            complement(2000..2416)
                     /locus_tag="VE567_07265"
     CDS             complement(2000..2416)
                     /locus_tag="VE567_07265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2946 family protein"
                     /protein_id="HYZ48676.1"
                     /translation="MSAFRRLPVQRHSVALLLAFALLVKLLVPVGWMPAFDGRGVHLE
                     LCGSYGPPPPAMAEAMADAAHRMSGDEHKHHGKASADQPCAYAGLAFAMAEPVLPALA
                     APAIVTAAPLAFAAAVAIGRGLAAPPPPATGPPSRA"
BASE COUNT          424 a          835 c          882 g          385 t
ORIGIN      
        1 tcgacagggt agaagatcgc gcgctgggcg tccgtaagcg cagaataatt taccactgcc
       61 gaaatatcgc cgacttgctt gcggttggtg aggttccgcg cgtcgacgaa caggctgagc
      121 ccggggcgga gctgcgcctc cgccgtcgcg ccgaccagca catagccgcc cggccggaat
      181 gtattcgcat agtccgccca ggcctcttgc ggcagccatt ccaggcttgg cgcgacgttc
      241 agcgcctcgc cgcccagccg cagctcggcg cggtagagat gctttgggat caccggcagg
      301 cgattgtcgc cgtatttcgc gtcttcgcgg aagcggaaat cattgaactg ataggcctgc
      361 cgcagccgcg cccagggcgc gaggctcagg tccagcccgg cctctattcc ctggtgcagc
      421 gtccggttcg cgttgaacgt cgaaaccggg aagccgcccg cggggtcgac attatattgc
      481 agcatctcgc cccgcaccgt cgcgcgatag aaagcgatgt cgaaccgcgc cggcccgagc
      541 gtaccgcgcg cgccgatctc ggccgtccag gcgcgctgcg cctttagcgg cacaaagttc
      601 gagagctgcg caagttcgat gaagccgggg agttcatggc tgcggctgta gttcgcatag
      661 acctgcagcg catcgcgtgg cgcccagagc aggccgagcc tgggcgagaa ttggtcgtaa
      721 cccgcctcgc cgaacgccgg catcgggaaa gtctgccgct ggcggcgttc cgcatgggta
      781 tagatgccgc cggcgatcag gctgagctgg ccgatcgcat agcgcgactc gccatagaca
      841 tcgatcgtct gcgcccgctg atgggcattg aacatcagcg cgcccttgtg cccgtccacg
      901 ttcgcaaaac gcttcgaagc gaccgtgccg aaccgcgcgg tcgtgcccac cgtgaggccg
      961 agcggcccct gtgcatagct cagccggcca aaagcgccgt aatcggtcga gacctgatcg
     1021 atatattggt agattggatg gtcgagctcc ttggcgttca gaaacccgcc aagctccagc
     1081 cgagcgtcac cgagcgcaac cgtggtgcgg ttctgcagcc ggagcgaatc gatgttgcgc
     1141 tgctgattgt tgaagctgtt gccggtgcct ggccgcgtca gcaccgtggc gatcgggagc
     1201 gtgccgggca gctcctgccg cagcatctgg ccgctgccgt agaagcgcgt ctcgacggtg
     1261 tccgaaagct tcagcccgac attggcgttg aggcgcaacg cattgcgatg cgcatggtcg
     1321 cgatcgccgt ccgaggtgtc gccggtcagc gcgacccagc cgtcgccggg gccgctttcg
     1381 aagccggccg cgagcttgcc ccggaaactg tcgaagctgc cgccgtcggc gcgcagattg
     1441 agccccggcg cgctgcggcc ggtgggcgtc acgccgttga tcgcgccgcc cagcgtcgag
     1501 ccgccgaagc gcagggcatt ggcgccgcgg aacacctgga tcacttcgaa gatcgcgggg
     1561 tccagctcct ggaaatcgcc attatcgtcg gcgaggttga tgggcacgcc gtcctgcagc
     1621 agcgtcagtc cgcgcatatg gaagccgcgg ctgacgccgg agccgcggat cgacagccgc
     1681 acttcctgcc cgaaacgcgg ctgcgcatag acgccgggcg agaaggcgag ggcgtcgcga
     1741 agcgacaccg cggccttggc gcgataatcg tcggcggtga cgagatcggt gccgccgggg
     1801 cgggcgaggg tttcggcttc gcttgcggcg cgctggccgg tgacgatgat cgtggcggga
     1861 ggctcgtcgg cataggccgg cacggcggcg gcgagcgcgc tcagtgcgcc cgcccaataa
     1921 agagatttca tctgttctca tcctgaacct gaagagccgc gcgggcgcgc ggcgaaggcc
     1981 gcttcaatag cggcgtggat caggcgcggg aaggcggacc agtggcaggc ggcggcggag
     2041 cggcgagccc gcggccgatc gccaccgcag cggcgaaggc caagggcgcg gcagtgacaa
     2101 tcgccggagc ggcgagcgcc ggcagcaccg gctccgccat cgcgaaggcg agcccggcat
     2161 aagcgcaagg ctggtcggcg ctcgccttgc catgatgctt atgctcgtcg ccgctcatgc
     2221 gatgcgcggc gtccgccatc gcttcggcca tcgcgggcgg cggcgggcca tagctgccgc
     2281 acagctccag atgcacgccg cgtccgtcga acgccggcat ccagccgacc ggcaccagca
     2341 gctttaccaa caaggcgaag gccagcagca gcgcgaccga atgacgctgg acgggaaggc
     2401 gccggaaggc ggacatggcc gcgcatctac ccgctggagc gatcaaggca agcgcgcatc
     2461 ccatgccgcg caaccgcgcg gcgcgggccg tagttccaac agccgggggt cagtgcttgt
     2521 ccgggc
//
LOCUS       DASQVK010000339         4659 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_274546,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000339 DASQVK010000000
VERSION     DASQVK010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4659
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274546"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            45..941
                     /locus_tag="VE567_07270"
     CDS             45..941
                     /locus_tag="VE567_07270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYZ48677.1"
                     /translation="MTISFRDRVAIVTGAGGGLGRAYALELARRGAKVVVNDLGGARD
                     GTGHSDAALKVVEEIEAAGGEAMSNGGSVTEYEQMVEMVAKAKERWGGVHILINNAGV
                     LRDKSFAKMEPADFRFVVDVHLNGSAICSKAVWETMREQAYGRVLMTASSTGLYGNFG
                     QANYGAAKLGLVGLAKTLHQEGAKYNIRVNSIAPVAGTRMTEDLFPPEAFKAFAPENV
                     VPAALYLVSEDAPSNMIVGAGAGAYHAAYVTMTPGVLLPHDERTPEGIAANWDRIIDR
                     GGEVVPQSGSEHTMAILKLLQG"
     gene            complement(938..1282)
                     /locus_tag="VE567_07275"
     CDS             complement(938..1282)
                     /locus_tag="VE567_07275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2794 domain-containing protein"
                     /protein_id="HYZ48678.1"
                     /translation="MSNVHPFPVWQRGAGQVGFDRPELMRILDLYGRMVAAGLWRDYA
                     IDMGRDAAIFSGFRRTAERPEFRIEKRPALRHRQGEWALIGESGIVLKRGHELGPVLA
                     PVERRLLKVVTV"
     gene            complement(1279..1971)
                     /gene="epsC"
                     /locus_tag="VE567_07280"
     CDS             complement(1279..1971)
                     /gene="epsC"
                     /locus_tag="VE567_07280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009001 - serine O-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase EpsC"
                     /protein_id="HYZ48679.1"
                     /translation="MASRLFDYLDSIRARDPAPHSRWEILLYPGVLAVALHRVAHWLY
                     EGELYFLARFINHLARFLTAIDIHPGAKIGRNLFIDHGFTVIGETAEIGHNVTIYQCV
                     TLGGTNPANGIAGKRHPTLEDNAIIGSGAQVLGPITVGKGARVGANAVVTKDVPEGAV
                     MVGIPAKPTLMDAEQYQKEFMPYGTVCSDLCDPAGQRLEGMKLEIERLQAKIDALIAE
                     RKEMTERQDLFG"
     gene            2129..2890
                     /locus_tag="VE567_07285"
     CDS             2129..2890
                     /locus_tag="VE567_07285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017672279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HYZ48680.1"
                     /translation="MFQLSVLTELLPFVAIGFAAQLIDGALGMAFGVINSTLLISALG
                     VPPAAASASVHVVETFTTAASGISHSLHRNVDWRLFVRLAIPGVIGGVLGAYVLSNID
                     ASVARPFVMAYLGGIGVYLLYRAWQGRTEAREPRHIAPLGLAGGFLDAAGGGGWGPVV
                     TSNLLVQGASPRKTIGTVNTAEFFLTATISATFIVTLGWEAFTMQTLGILAGGLVAAP
                     FGAMLVKRLSARRLMTFVGGLLILTSGASIYGALA"
     gene            complement(2882..4003)
                     /gene="dapE"
                     /locus_tag="VE567_07290"
     CDS             complement(2882..4003)
                     /gene="dapE"
                     /locus_tag="VE567_07290"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009014 - succinyl-diaminopimelate
                     desuccinylase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HYZ48681.1"
                     /translation="MSDAIELAKRLIACPSITPARGPVFDAVEAMLVARGFTVDRFVA
                     GEAPDGPVENLLAWRGGGGPHFAFAGHLDVVPPGEGWSADPFAAEVRGDLLYGRGAVD
                     MKGAIAAFIAAVDRVEQPRGTISLIITGDEEGPAIHGTRALIARMGELGLRPDLCLVG
                     EPTSVHRLGDTIKIGRRGSVNIWIEVPGAQGHVAYPHLADNPIPKLVRALARIDAIEL
                     DRGTDWFQPSNIEVTDLEVGNPATNVIPARAKARLSIRFNDLHRGEDLAARIRDIVLA
                     EAPDAIVIARVSGEAFLTAPGPLSELVAAAIERHGGLKPELSTSGGTSDARFLSKLCP
                     VVEFGLPNATMHKLDEAIVLADLEALTAIYADIVQRALG"
     gene            4014..4463
                     /locus_tag="VE567_07295"
     CDS             4014..4463
                     /locus_tag="VE567_07295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006949798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HYZ48682.1"
                     /translation="MPKLNLDQIPQTNATGYPPEYADVVRERWYRRLAPASGITDFGA
                     SHVVLKPGAWSAQRHWHEGEDELVVMIAGEAVLVDDHGRTPMGAGDIAAFPKNDGNGH
                     VLINESDRDCVFVAIGRPAVTDCHYPDIDMHLFADAGRQKRKDGSDF"
     gene            complement(4464..>4659)
                     /locus_tag="VE567_07300"
     CDS             complement(4464..>4659)
                     /locus_tag="VE567_07300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HYZ48683.1"
                     /translation="FDRYTAADIMFAPVAARFVTYSVPLPGFAATYVEALYTHPCIRE
                     WIEAAQDETWTIEKFEQALA"
BASE COUNT          836 a         1522 c         1483 g          818 t
ORIGIN      
        1 ttcgcaaaga gccttccgga ccagcttcgg caggctcttt tctcatgacc atcagttttc
       61 gtgaccgcgt ggccatcgtc accggcgccg gcggcggcct tggccgcgcc tatgcgctcg
      121 aactcgcgag gcgcggcgcc aaggtggtcg tcaacgatct cggcggcgcg cgggacggga
      181 ccgggcatag cgacgccgcc ctgaaggtcg tcgaagagat cgaagcggcg ggcggcgaag
      241 cgatgtcgaa cggcggcagc gtcaccgaat atgaacagat ggtcgaaatg gtggccaaag
      301 ccaaggaacg ctggggcggc gtccatatcc tcatcaacaa tgccggcgtg ctgcgcgaca
      361 agagcttcgc caagatggag ccggccgatt tccgcttcgt cgtcgacgtg catctcaacg
      421 gctcggccat ctgcagcaag gctgtgtggg aaacgatgcg cgagcaggcc tatggccggg
      481 tcctgatgac agcttcctcg acagggctct acggcaattt cggccaggcg aattatggcg
      541 cggccaagct gggcctggtc ggccttgcca agacgctcca tcaagaaggc gccaagtaca
      601 atatccgcgt caattcgatt gcgccggtcg ccggcacgcg catgacggaa gacctgtttc
      661 cgcccgaggc tttcaaggcg ttcgcgccgg aaaatgtcgt gcccgccgcg ctctatctgg
      721 tcagcgagga tgcgcccagc aatatgatcg tcggcgccgg cgcgggcgcc tatcatgccg
      781 cctatgtgac gatgacgccg ggcgtgctgc tgccgcacga cgagcgcacg ccggaaggca
      841 ttgccgcgaa ttgggaccgg atcatcgacc gcggcggcga ggtcgtccct caatcaggca
      901 gcgagcacac aatggcgatc ctgaagctgc tgcagggcta aacagtcacg accttcagaa
      961 gcctgcgctc gaccggggcg agcaccgggc ccagctcgtg gccacgcttg agcacgatgc
     1021 cgctctcgcc gatcagcgcc cattcaccct ggcggtggcg cagcgcgggg cgtttttcga
     1081 tgcgaaattc gggtcgctcg gcggtgcggc gaaagcctga gaagatcgcg gcgtcgcggc
     1141 ccatatcgat cgcatagtcg cgccacaggc ctgccgccac cattcgcccg taaagatcga
     1201 gtatgcgcat cagctcggga cggtcgaaac cgacctgccc ggccccccgc tgccaaaccg
     1261 gaaaagggtg aacgttactc atccgaacag atcttgacgc tccgtcattt ctttccgctc
     1321 ggcgatcagc gcgtcgatct ttgcctggag ccgctcgatc tccagcttca tgccctctag
     1381 ccgctgaccg gccgggtcgc agagatcgga gcagaccgtg ccatatggca tgaactcctt
     1441 ctgatactgc tccgcatcca tcagcgttgg cttggcgggg atgccgacca ttaccgcgcc
     1501 ttcaggcacg tccttggtca cgaccgcatt ggcgccgacg cgcgcgcctt tgccgacagt
     1561 gatcggcccc agcacctgcg cgcccgagcc aatgatggca ttatcttcca aggtcgggtg
     1621 gcgcttgccg gcaatgccgt tggcagggtt ggtgccgccc aaagtgacgc actgatagat
     1681 cgtcacattg tggccgattt ccgcagtctc cccaattacg gtgaagccat gatcgatgaa
     1741 caggttgcgg ccgatcttcg ccccgggatg gatatcgatc gcagtcaaga accgcgccag
     1801 atgatttatg aagcgggcaa ggaaatacag ctcgccttcg taaagccaat gcgcgacgcg
     1861 gtgcagggca acggcaagca cgcccggata gagcaggatt tcccaccggc tatgcggtgc
     1921 ggggtcgcgc gcgcggatcg agtccagata gtcgaacaat ctgctcgcca ttgatgaacc
     1981 ctccctttct tcccgcccca tctagggaac gcctgaccgg attgccagtt tatgcgcccg
     2041 cggtttcgtc atggcaaagt gcaactgttc ttgccgaacg ttccttgttg ccgcacatcg
     2101 aagccgaaac gagcggggag gattgcacat tttccagctt tccgtcctga ccgaattgct
     2161 gcccttcgtc gcgatcggct ttgccgccca gcttatcgac ggcgcgctgg gcatggcgtt
     2221 cggcgtgatc aacagcactc tgctgatcag cgccttgggc gtgccgccgg ccgccgcctc
     2281 ggccagcgtt catgtggtcg agaccttcac gaccgctgca tcgggcatca gccattcgct
     2341 gcatcgcaac gtcgactggc ggctgttcgt gcggctcgcg attcccggcg ttatcggcgg
     2401 ggtgctgggc gcctatgtgc taagcaatat cgatgcgagc gtcgcgcggc cgttcgtcat
     2461 ggcctatctg ggcgggatcg gcgtgtatct gctctaccgc gcctggcagg gccgtactga
     2521 agcgcgcgaa ccgcgccaca tcgcgccatt ggggctggcc ggcggctttc tcgacgccgc
     2581 gggcggagga ggctgggggc cggtcgtcac gtccaacttg ctggtccagg gcgctagccc
     2641 gcgcaagacg atcggtaccg tgaacaccgc cgagttcttc ctgacggcca cgatttcggc
     2701 gaccttcatc gtgacgctcg gctgggaagc ctttacaatg cagacgctcg gcattcttgc
     2761 cggcggcctc gtcgccgcgc ccttcggcgc gatgcttgtc aaacgcctgt cggcccgccg
     2821 gctgatgact ttcgtcggcg ggctgctgat cctgaccagc ggcgcctcga tctacggtgc
     2881 cctagcctag ggcgcgctga acaatatcgg catagattgc cgtcaacgcc tcaagatccg
     2941 caaggacgat agcttcgtcg agcttgtgca tcgtagcgtt gggcaacccg aattcgacaa
     3001 cgggacacag cttcgaaaga aagcgcgcgt cggaagtgcc gccgctggtc gagagctcag
     3061 gtttcaggcc gccatgccgc tcgatcgccg cggccaccag ctcggagagc ggccccggag
     3121 cggtcagaaa cgcctccccc gacacgcggg ctatgacgat cgcatcgggc gcctcggcaa
     3181 gcacgatgtc gcgaatccgt gcggcaagat cctcgccccg gtgcagatcg ttgaagcgaa
     3241 tgctgagccg ggccttggcg cgcgccggga taacgttcgt cgccggattg ccgacctcca
     3301 gatcagtgac ttcgatgttg gagggctgga accagtccgt gccgcggtcg agctcgattg
     3361 cgtcgatccg cgccagcgcg cgcacgagct tcgggatcgg gttgtcggcc agatgtggat
     3421 aggcgacatg gccctgtgcg cccggaacct cgatccagat attgaccgag ccccgccgcc
     3481 cgatcttgat cgtgtccccg agccggtgga ccgaagtcgg ctcgccgacc aggcacagat
     3541 cgggtcgcaa gccaagctcg cccatccgcg cgatcagcgc acgggtgccg tggatcgccg
     3601 ggccttcctc gtcgccggtg atgatgagac tgatcgtgcc gcgcggctgc tcgacccgat
     3661 cgaccgcggc gatgaaggcg gcaatcgcgc ctttcatgtc caccgcgcca cggccgtaga
     3721 gcaggtcgcc tcgcacttcc gccgcaaacg ggtccgccga ccaaccctcg cccggcggga
     3781 cgacgtccag atggccggcg aatgcgaaat ggggtccgcc acccccgcgc caggcgagca
     3841 ggttttcgac cggcccatcg ggcgcctcgc ccgcgacgaa gcggtcgacg gtgaagccgc
     3901 gcgcgacgag catggcctcg acggcatcga agacaggacc tcgggccggc gtgatgctgg
     3961 ggcacgcgat caggcgcttg gcaagctcaa tcgcgtccga catcattcct cccatgccca
     4021 agctcaacct cgaccaaatc ccgcagacga acgcaaccgg atatccgccg gaatatgccg
     4081 atgtggtgcg ggagcgctgg taccgacgcc tggccccagc ctccggaatc actgatttcg
     4141 gcgccagtca cgtcgtgctg aaaccgggcg cttggtccgc ccagcgccac tggcacgaag
     4201 gcgaagacga gctggtcgtc atgattgcgg gcgaagcggt gctggtcgac gatcatggcc
     4261 gcacgccgat gggcgccggc gacatcgccg ctttccccaa gaatgacggc aacggccatg
     4321 tgctgatcaa cgaaagcgac cgggactgcg tgttcgtcgc tatcggccgg ccggcagtca
     4381 ccgactgcca ttacccggat atcgacatgc acctgtttgc cgatgcaggc cggcagaagc
     4441 gcaaggacgg cagcgacttc tgatcaggcg agcgcctgct cgaatttctc aatcgtccag
     4501 gtctcgtcct gcgccgcctc gatccattcg cggatgcagg ggtgcgtgta gagcgcctcg
     4561 acataagtcg cggcaaagcc cggcagcggc accgaataag tgacgaaacg cgcggcaacg
     4621 ggcgcgaaca tgatgtctgc agccgtatag cggtcgaac
//
LOCUS       DASQVK010000340         3481 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_439664,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000340 DASQVK010000000
VERSION     DASQVK010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3481)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3481)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3481
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_439664"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..215)
                     /locus_tag="VE567_07305"
     CDS             complement(<1..215)
                     /locus_tag="VE567_07305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48684.1"
                     /translation="MFAVGVGVGLGVGAGVGLGVGVGAGVGAGDGVGAGVGLGVGAGV
                     GLGVGDGVGAGVGLGVGAGVGLGVGDGV"
     gene            277..1038
                     /locus_tag="VE567_07310"
     CDS             277..1038
                     /locus_tag="VE567_07310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48685.1"
                     /translation="MLNANGTASTVSGSSSDFGGGVSLAYDAATGGYTVRDAAGASAT
                     FLPASKNPSESNAVVSVFNQVSGNVTDQLVLFNPGPANTTLALSYVSYGAWQRLTSNG
                     STADVAQQYFVYGVRQGANQPSTGSASYTTKVDGLWTNPDGVYALSGSSAFTADFSAM
                     TVATTLDLSGVKSTGTVTENKNFGRFVGSGTIAALGGGFSGTFVQQGAAGDGKVYSGG
                     FTGAFFGPQGQEVGYTFGLTAAGAAAAGAVVGKAP"
     gene            1084..2397
                     /locus_tag="VE567_07315"
     CDS             1084..2397
                     /locus_tag="VE567_07315"
                     /inference="COORDINATES: protein motif:HMM:NF016462.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="surface lipoprotein assembly modifier"
                     /protein_id="HYZ48686.1"
                     /translation="MALLVSNAAPSVAQQRAECEPAKGCLTGLSAPQVFALAEHYAAA
                     GQVANAETLLKGLTRDANPDYRAEARFRLSVLREAQGDKQGAIEWLKALLDEKPNAGR
                     PRLELARLLAATGDEAGARRELRRAGAAGLPEDVARVVDRFATALRSVRPIGGAIEVA
                     VAPDSNINRATSREQVDTVIAPFTLSRDARATSGIGLSLSAQGFARGALSDHVDLLSR
                     ISARADLYGKSRFDDVVLTGATGPEFYIGRARVRPAAVAQRRWFGNHPYSESYGGSLN
                     LLKPLDRVSQLEGELTVLQNAYMRLPVQNGILADLGLSYDRAFSPRFSGRVSVRGTRQ
                     DARVDNLSTWSGGIDLLASRAFGKQLAFVQLSGFKLRADAREPFFGVTRDDTRFDLTA
                     GLVLRRFTWHGLAPLVRVTYSNNDSTIAIYGFKRTRVEFALSREF"
     gene            complement(2394..2696)
                     /locus_tag="VE567_07320"
     CDS             complement(2394..2696)
                     /locus_tag="VE567_07320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017503401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48687.1"
                     /translation="MDISNTPLVERIARVLAGQRLSSNAEGSNPSAGEAVDLAWREHL
                     DDARAVLRTLREPDETMAASGDVAVWERMVRAAIDADGAEKPNTDRVEQEAAAVGP"
     gene            complement(2743..3168)
                     /locus_tag="VE567_07325"
     CDS             complement(2743..3168)
                     /locus_tag="VE567_07325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF983 domain-containing protein"
                     /protein_id="HYZ48688.1"
                     /translation="MATDESFAWTERGKWNWILRVGWKGLCPRCGKGSLFRGWLKVRE
                     ACPVCGLDYRFATPDDGPAFFALCLTAFPLIFFVVWLEVKYAPPIWVHVLTSGPLMAI
                     GTVASLRPFKGWLVASQYVHKAEEAGTADLARKLDRRRD"
     gene            complement(3168..>3481)
                     /locus_tag="VE567_07330"
     CDS             complement(3168..>3481)
                     /locus_tag="VE567_07330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007703938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA gyrase subunit B"
                     /protein_id="HYZ48689.1"
                     /translation="AKPAMLIRKGEEVQVAGPGALLDAVMSIGAKGVTQQRYKGLGEM
                     NAEQLWETTLDPDVRSLLKVTLDDATDEDNVFTQLMGDVVEPRREFIQENALSVANLD
                     V"
BASE COUNT          542 a         1266 c         1100 g          573 t
ORIGIN      
        1 accccatcgc ccacgccaag cccgacgccc gcgccgacgc cgagccccac gccggcgccg
       61 accccgtcgc ccacgccaag cccgacgcct gcgccgacgc cgagccccac gccggcaccg
      121 accccgtcgc ccgctccaac cccggcgccc actccgacgc cgagccccac gccggcgccg
      181 accccaagtc cgacgcccac gccaacggcg aacacgacgc tcgtcccgct gcagtacagc
      241 gagaccttcg ctgccgcagg cgcaaggaca gcgttcgtgc tgaacgcgaa cggcaccgcg
      301 tcgacggttt cgggatcgag cagcgacttt ggcgggggcg tgtcgctcgc ttatgacgcg
      361 gcgacgggcg gttataccgt gcgcgatgcc gccggcgcct cggccacctt cctgccggcc
      421 tcgaaaaatc cgtcggaaag caacgcggtc gtgtcggtct tcaatcaggt gtccggcaac
      481 gtcacggacc agctggtctt gttcaatccg gggccggcga ataccacgct cgcgctgagc
      541 tatgtgagct atggcgcctg gcagcggctg acgagcaatg gctcgacggc ggacgtcgct
      601 cagcaatatt tcgtctatgg cgtccggcag ggggccaatc agcccagcac cggctctgcg
      661 tcctatacga ccaaggtgga tgggctctgg accaatcccg acggcgtcta tgcgttgagc
      721 ggctcgagcg ccttcaccgc cgatttctcg gccatgacgg tcgcgaccac gctcgatctg
      781 agcggcgtga aatcgaccgg gacagtcacc gagaacaaga atttcggccg attcgtcggc
      841 tccgggacga tcgcggctct gggcggcggc ttcagcggca ccttcgttca gcagggcgcc
      901 gcgggcgacg ggaaagtcta tagcggcggc ttcaccggcg cctttttcgg gccgcagggt
      961 caggaagtcg gctacacctt tggccttacc gcggctggcg ctgccgccgc gggtgcggta
     1021 gtcggcaaag ctccttaaat cctgccgtcg ccggaggcga ttctgctcgt tcgattcgcc
     1081 tgcgtggcgc tgcttgtctc gaatgccgct ccgtccgttg cccagcaacg ggcggagtgc
     1141 gagccggcga agggctgcct taccggcctg tcggcgccgc aagtcttcgc gctggccgag
     1201 cattatgcgg cggccggtca ggtcgcgaat gccgagacgt tgctcaaggg tctcacgcgc
     1261 gacgccaatc ccgactaccg ggccgaagcg cgctttcgcc tctcggtcct gcgcgaggcg
     1321 caaggggaca agcagggcgc gatcgagtgg ttgaaggcgc tgctcgacga aaagcccaat
     1381 gccggccggc cgcggcttga gctcgcgcgc ctgcttgccg ccacgggcga cgaagccggc
     1441 gcccgccgcg agctccgccg cgccggcgcg gccggcctgc ccgaagacgt cgcgcgcgtg
     1501 gtcgatcgct tcgccaccgc gcttcggtcg gtacggccga tcggcggcgc gatcgaggtg
     1561 gcggtcgcgc cggacagcaa catcaaccgc gccaccagcc gcgagcaggt ggacacggtc
     1621 atcgcgccct tcacgctcag ccgcgacgcc cgcgcgacgt ccggcatcgg cctttcgctg
     1681 tccgcgcagg gctttgcgcg cggcgcgctg agcgaccatg tcgacctgct gagccgcatc
     1741 tcggcccgcg ccgacctcta tggcaaatcc cgcttcgacg atgtcgtgct caccggcgcg
     1801 accggacccg aattctatat cggccgcgcg cgcgtcaggc ccgccgccgt cgcccagcgg
     1861 cgctggttcg gcaatcatcc ttattcggaa agctatggcg gctcgctgaa cctgctcaag
     1921 ccgctcgacc gcgtcagcca gctcgaaggg gagctgaccg tgctgcagaa cgcctatatg
     1981 cgcctgccgg tccagaatgg cattcttgcc gatctcggtc tttcatatga tcgcgccttc
     2041 agtccgcgct tcagcggccg ggtcagcgtg cgcggcacgc gccaggatgc gcgcgtggac
     2101 aatctctcga cctggagcgg cggcatcgac ctgctggcct cgcgagcctt cggcaagcag
     2161 ctcgccttcg tgcagctgag cggcttcaag ctgcgcgccg acgcccgcga gccgttcttc
     2221 ggcgtcaccc gcgacgatac ccgcttcgat ttgacggcgg gcctcgtgct ccggcgcttc
     2281 acctggcacg gtctcgcccc gctcgtgcgg gtcacttatt ccaacaacga ttccacgatc
     2341 gcgatctacg gattcaagcg cacgcgcgtc gaattcgcac tcagccgcga gttttaaggc
     2401 ccgaccgcgg cggcctcctg ctcgacccgg tccgtattcg gcttctcggc gccatcggcg
     2461 tcgatcgcgg cgcggaccat tcgctcccat acggccacat cgcccgacgc cgccatcgtc
     2521 tcgtcaggct cgcggagcgt ccgcagcacc gcgcgcgcat cgtcgagatg ctcgcgccag
     2581 gcgagatcca ccgcctcgcc cgcggacggg ttcgatcctt ccgcattgga gctgagccgc
     2641 tgcccggcca gcacccgcgc gatccgctcg acgagcggcg tgttggaaat gtccatgctc
     2701 aatctcctca gcggaagctg aacacgcgag cgccgttcgg gttcagtccc tgcggcggtc
     2761 gagcttgcgc gcgaggtcgg ccgtgccggc ctcttcggcc ttgtgcacat attgggacgc
     2821 gaccagccag cctttgaacg gcctcaggct cgcgacggtg ccgattgcca tcaagggccc
     2881 cgaggtcagc acatgcaccc agatcggcgg cgcatatttc acttccagcc acacgacgaa
     2941 gaagatcagt ggaaacgccg tgaggcacag tgcgaaaaag gcgggcccgt cgtccggcgt
     3001 cgcgaagcgg taatcgagcc cgcacacggg gcaggcttcg cgcaccttca gccagcccct
     3061 gaacagcgac cccttgccgc agcgcgggca caagcctttc catcccaccc gcaggatcca
     3121 gttccacttg ccccgttcgg tccaggcgaa ggattcgtcg gtggccatca cacgtccagg
     3181 ttcgccacgc tcagcgcatt ttcctggatg aactcgcggc gaggctcgac gacatcgccc
     3241 atcagctgcg tgaagacatt gtcctcgtca gtggcgtcgt ccaatgtcac tttcagcagc
     3301 gagcgcacat cgggatcgag cgtggtttcc cacagctgct cggcgttcat ttcgccgagg
     3361 cccttgtagc gctgctgcgt gacgcccttg gcgccgatcg acatgaccgc atccaaaagc
     3421 gcgccgggcc ccgcgacctg cacctcctcg cccttgcgga tgagcatcgc gggcttggca
     3481 t
//
LOCUS       DASQVK010000341         6446 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_306114,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000341 DASQVK010000000
VERSION     DASQVK010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6446
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306114"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..467
                     /locus_tag="VE567_07335"
     CDS             <1..467
                     /locus_tag="VE567_07335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HYZ48690.1"
                     /translation="LTVRSYSKETRQHLLDGIRRIARGEALAAGLPEELMPVVAPFGT
                     PGIATYNDEPLANRLAATFKARFGDARVTQTKPVMVSEDFPQYREADPQHIQSTLFWV
                     GGVPQAKWDAVGGDPAKLPSLHSPFWAPDADKVIATGTEAMVAAAMDLLAKK"
     gene            495..1931
                     /locus_tag="VE567_07340"
     CDS             495..1931
                     /locus_tag="VE567_07340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010216163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HYZ48691.1"
                     /translation="MSKLLRRKAIETGDAQPAEHRLARTLSWPHLVALGVGAIVGTGI
                     LTLIGVGADRAGPAVLLSFVVAGAICACAALCYAEMATMIPASGSAYTYSYSVLGEVF
                     AWVVGWSLILEYSLVVSTVAVGWSGYAVGFLKGLGVVLPDMLTHGPAVAGSLFDGSFH
                     VTQSGVNLPAIVIIAIVAGLLMLGTRESATVNALLVVLKIVTLALFVAVALPHFDPAN
                     LHPFAPLGYGSTPGEGGVKYGVMGAAAIIFFAFYGFDAISTAAEEAKNPERDLAIGIV
                     GSMIACTAIYMIVAAAAVGALHYTGFANSPEPLALILREIGQPGIATVIAAAAAIALP
                     TVLLAFLYGQTRIFMVMARDGFLPTGLAKISARGTPARITALTALFVAFIAAVTPLDQ
                     IASLANAGTLCAFAAVAVSVLVMRSREPGRRRAFRTPLVWIVAPAAILGCLYLFTSLQ
                     WVTQKYFFVWNAIGLLIYLTYGQARSRA"
     gene            complement(1928..2332)
                     /locus_tag="VE567_07345"
     CDS             complement(1928..2332)
                     /locus_tag="VE567_07345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009822489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2147 domain-containing protein"
                     /protein_id="HYZ48692.1"
                     /translation="MKFLCCIALLIAAPASAAQSVAGLWLTDAKDGIVEIAPCGPKLC
                     GRLVKLLTVPKGPPTDHNNPDPSLRTRPLLGMPVLTGFAPEGDLWRGTGYDPKVGKSY
                     NTTLQRMAPDQLKIRGCLFAFLCRSAIWTRAN"
     gene            2475..3350
                     /locus_tag="VE567_07350"
                     /pseudo
     CDS             2475..3350
                     /locus_tag="VE567_07350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010404331.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0017061 - S-methyl-5-thioadenosine
                     phosphorylase activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5'-thioadenosine phosphorylase"
     gene            3549..4181
                     /gene="maiA"
                     /locus_tag="VE567_07355"
     CDS             3549..4181
                     /gene="maiA"
                     /locus_tag="VE567_07355"
                     /EC_number="5.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016034 - maleylacetoacetate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylacetoacetate isomerase"
                     /protein_id="HYZ48693.1"
                     /translation="MTIRLFDYFRSSASYRVRIGLNLKGLAYERVDISLLDGAQRSPE
                     HLARSPQGFVPALETDGLTLTQSLAILDYLDARFPEPPFVSKDPARRARTLAQALAIA
                     CDIHPLNNLRVLKYLKHELGASDQARDDWYRHWMREGFLALETMAEGSGRYLGGEAPD
                     LADICLVPQMFNARRFSLDLTPFPTLVRIDAGLQELGPFAAAHPERVKPS"
     gene            complement(4220..5680)
                     /locus_tag="VE567_07360"
     CDS             complement(4220..5680)
                     /locus_tag="VE567_07360"
                     /inference="COORDINATES: protein motif:HMM:NF024832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flippase"
                     /protein_id="HYZ48694.1"
                     /translation="MSVSRNATYNLIGAVLPILLALVTVPIYLKLVGTDRYGVLAIAW
                     LLLGYFGLFDLGLGKATTYSIAALKDASAQDRADVFWTAIVTNIIMGALGGLVLYAAA
                     DLFFDQIFKVDARLRPEILASVPYLALAVPIATMTGVLSGALQARDRFLETNMISVLS
                     TSLFQVFPLAVALAWGPNLSGLLIASVAARAVAIAVLWWRCHILITRGQKVRYDRSQI
                     KDLLGYGGWVTITGLFGPILVILDRFAIGAVLGARAVTVYTVPFQLAQRIAIFPNALV
                     TAVFPRLPTASPDERLALSEKAIRVLLASISVPIMAGIYILHPFLDLWVGRELGREAA
                     AVGTVIVFGYWVNAFAVVPYSWLQGTGRPDVVTKVLLAQIPPYLVLLYAGMKGFGLIG
                     CATVFALRCSADFLLMWWAARRKLQPAQLIGLVALPLLAGVILSDLLSYTDPLWWLSG
                     LALNVVTAALCWRIAPPELFQKARGMLSGLKRRFAH"
     gene            complement(5690..>6446)
                     /locus_tag="VE567_07365"
     CDS             complement(5690..>6446)
                     /locus_tag="VE567_07365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HYZ48695.1"
                     /translation="FTGRRTAELIKYAANAFLATKISFINELADLAEEVGADIKDVSR
                     GIGLDNRIGRKFLHAGPGYGGSCFPKDTLALLKTAEEYGVPLRIVNSTVEANDLRKVA
                     MGHKVIEALGGAAKGKRVGLLGLTFKPNTDDMRDAPSLDIVRVLREAGADVAAHDPEG
                     MEQARMALGELDYKDSPYDVALGADALVLVTEWDAFRALDLKRLAGSMRRPVLVDLRN
                     VYNPVEAEKAGLTYYGIGRGVAGAEAPLEQKVA"
BASE COUNT         1112 a         2101 c         2158 g         1075 t
ORIGIN      
        1 agctgacggt gcggagctat tcgaaagaga cgcgccagca tctcctcgac ggcattcgcc
       61 ggatcgctcg cggcgaggcg ctcgccgccg gcctgccgga ggagctgatg ccggtcgtcg
      121 cgccgttcgg cacgccgggg atcgcaacct ataacgacga gccgctcgcc aaccgcctcg
      181 ccgccacctt caaggcgcgg ttcggcgatg cgcgcgtgac ccagaccaag ccggtgatgg
      241 tgagcgagga cttcccccaa tatcgcgagg ccgatccgca gcacatccag tcgacgctct
      301 tttgggtcgg cggcgtgccg caagccaaat gggacgcggt gggcggcgac ccggccaagc
      361 ttccttcgct gcacagcccc ttttgggcgc ccgatgcgga taaagtcatc gccaccggca
      421 ccgaggcgat ggtggcggca gcgatggacc tgctggcgaa gaagtagaaa ataagaatcc
      481 gggaggggca gagcttgagc aaattgcttc gccgcaaggc gatcgagacc ggggacgcgc
      541 agcccgccga gcatcggctg gcgcgaacgc tttcctggcc gcatctggtg gcgctgggcg
      601 tcggcgcgat cgtcggcacc ggcatcctga cgctgatcgg cgtcggtgcg gaccgggcgg
      661 gcccggcggt gctgctgagc ttcgtggtcg ccggcgcgat ctgcgcctgc gcggcgctct
      721 gctatgccga gatggcgacg atgatcccgg cctcgggcag cgcctatacc tatagctatt
      781 cggtgctggg cgaagtgttc gcctgggtgg tcggctggag cctcatcctc gaatattcgc
      841 tggtcgtctc gaccgtggcg gtcggctggt cgggctatgc tgtcggcttt ctgaaagggc
      901 tcggcgtggt gctgcccgac atgctgacgc acgggccggc cgtggcgggc agcctgttcg
      961 acggcagttt ccatgtcacg caaagcggcg tgaacctgcc cgcgatcgtc atcatcgcga
     1021 tcgtcgccgg gctgctgatg ctcggcacca gggaaagcgc gaccgtcaac gcgctgctgg
     1081 tcgtgctgaa gatcgtgacg ctggcgctgt tcgtggcggt cgcgctgccg catttcgacc
     1141 cggcgaacct ccaccccttc gcgccgctcg gctatggcag cacgccgggc gaaggcggcg
     1201 tcaaatatgg cgtgatgggc gcggcggcca tcatcttctt cgccttttac ggcttcgacg
     1261 cgatctcgac cgcggcggag gaagccaaga atccggagcg cgacctggca attggcattg
     1321 tcggctcgat gatcgcctgc accgccatct acatgatcgt ggcggccgcc gcggtcggcg
     1381 ctttgcatta cacaggcttc gccaacagcc ccgagccgct ggcgctgatc ctgcgcgaga
     1441 tcggccagcc gggcatcgcg acggtgatcg cggccgcggc ggcgatcgcg ctgccgaccg
     1501 tgctgctcgc ctttctctac gggcagacgc gcattttcat ggtgatggcg cgcgacggct
     1561 tcctgcccac gggacttgcc aaaatctcgg cgcgcggaac gccggcgcgg atcacggcgc
     1621 tgaccgcgct gttcgtcgcg ttcatcgcgg cagtgactcc gctcgaccag atcgcctcgc
     1681 tggccaatgc gggcacgctc tgcgctttcg ctgccgtggc agtgagcgtg ctggtgatgc
     1741 gcagccgcga gcccgggcgg cggcgcgctt tccgcacgcc gctggtgtgg atcgtggcgc
     1801 cggcggcgat ccttggctgc ctttacctct tcaccagcct ccaatgggtc acccagaaat
     1861 atttcttcgt ctggaatgcc atcgggctgc tgatctacct gacctatggc caggcgcgga
     1921 gccgggccta gttcgcccgc gtccagattg ccgagcggca gagaaaggcg aacaggcagc
     1981 cgcggatctt gagctggtcc ggcgccatgc gctggagcgt ggtgttgtag ctcttgccga
     2041 ccttcgggtc gtagccggtg ccgcgccaga gatcgccttc cggtgcgaag ccggtcagga
     2101 cgggcattcc cagcagcgga cgcgtgcgca ggctggggtc gggattgttg tgatcggtgg
     2161 gagggccttt cggcactgtg aggagcttca ccagtcgccc gcacaatttc ggcccgcagg
     2221 gcgcgatttc gacgatgccg tccttcgcgt cggtcagcca aaggccggcc actgattggg
     2281 cggcggaggc gggagcggca atgagcaacg caatacagca aaggaatttc aagcaaccct
     2341 ccattgtgtc ctgggcctga tttctcagtg cccattgtcc gttcgacccg agcttgtcga
     2401 aggcgcccct tcttcttacg gcacctcgga aagaaaatag agggcttcga caagctctgc
     2461 ccagtcggag gataatggtg tccaattggt tcattggcgt gctcgggggc tccgggcttt
     2521 atgcgatcga cgcgctggaa ggggcggaat ggcggacggt ggagacgccc tggggcgcgc
     2581 cttccgacca agtattgacc ggcacgatcg cgggcgtgcg gttcgccttt ctgccgcggc
     2641 acgggcgagg gcatccgatc tccccgaccg agctcaatta ccgcgccaat atcgacgcgc
     2701 tgaagcagat cggctgcacc gacctgctcg cgctctcggc ggtcgggtcg ctgcgcgagg
     2761 aactgccgcc ggggcggttc gtggtcgccg accagttcat cgacaacacc aggcagcggc
     2821 cgaacagctt tttcgggacg gggctggtgg cgcatgtgtc gatggccgat ccggtgtgcc
     2881 cgcgccttgc cggcttcgcc gccgccgcgg cgacgcgcgc cggggcctaa gtgaccgagg
     2941 gcggcaccta tgtcgcgatc gaggggccgc agttcagcag ccgcgccgaa agccatatgt
     3001 accgcgcctg gggcgccgac atcatcggca tgaccgccat gcccgaagcc aggctcgcgc
     3061 gcgaggcgga gctgccctat gcgattgtcg cgatggtcac cgactatgat tgctggcgca
     3121 ccgacgaagc gcatgtcgag gtcagcgaag tgctccgcgt catgcacgcc aatgccgatg
     3181 cggcgcgccg gacagtcgtg gaattcgcgc gcctgttgcc ggccacccgg gagccgagcc
     3241 cgatcgacac gtgcctcgac catgcgctcg tgacgccccc cgaagcacgc gatccggcgc
     3301 tgctcgccag gctcggcgcg gtggtggggc gtgtgctggg ccgcccttaa gttcacaaac
     3361 ttcttagggt gagccgcctt tttcgtgaac ttaagcggga ttttcttgca ggaagaatga
     3421 cttagaccac aaccccaatt gcccagccgt ggtgaaattg cgacgaatgg tgagcgcatc
     3481 catgcgcctt ccgattgaaa gagtgcctcg tcttcggaac gtaacaggaa catgaggagt
     3541 aggacagcat gaccatccgc ctgttcgact atttccgttc gtccgccagc taccgcgtgc
     3601 ggatcggcct gaacctcaag gggctcgctt atgaacgcgt ggacatttcg ctgctcgacg
     3661 gcgcgcagcg gtcgcccgag catctggcgc gcagcccgca aggctttgtg ccggcgctgg
     3721 agacggacgg gctgacgctg acccagtcgc tcgccattct cgactatctg gacgcgcgct
     3781 ttcccgaacc gccgttcgta tcgaaagacc cggcgcggcg cgccaggacg ctggcccagg
     3841 cgctggcgat tgcgtgcgac atccacccgc tcaacaatct gcgcgtgcta aaatatctga
     3901 agcacgagct cggcgcatcc gaccaggcgc gcgacgactg gtatcggcac tggatgcgtg
     3961 agggattcct cgcgctcgag acgatggccg agggcagcgg gcgctatctg ggcggcgagg
     4021 cgccggacct ggcggacatc tgcctggtgc cgcaaatgtt caacgcacgg cgcttcagcc
     4081 tggacctaac ccccttccca acactggtgc ggatcgacgc ggggctgcaa gagctggggc
     4141 cgttcgccgc ggcgcatccc gaacgggtga agccgagcta aggccaagga acggacctgg
     4201 ggaagccggc tgcgccccgc tagtgggcga agcggcgctt gagaccgctc agcattccgc
     4261 gcgctttttg gaagagttcg ggcggggcga tgcgccagca gagcgcggcg gtgaccacgt
     4321 tcagcgccag cccgctcagc caccataagg gatcggtgta gctcaacagg tccgacagga
     4381 tcacgcccgc gagcagcggc agcgcgacca ggccgatcaa ctgcgcgggc tggagcttgc
     4441 ggcgcgcggc ccaccacata agcaggaagt cggccgaaca gcgcagcgca aaaaccgtcg
     4501 cgcaaccgat caggccaaaa cccttcatgc cggcataaag cagcaccaga taaggcggga
     4561 tctgggcgag cagcaccttg gtcaccacat caggccggcc tgttccctgc agccagctat
     4621 agggcaccac cgcgaaggcg ttcacccaat agccgaacac aatcacggtg ccgacggcag
     4681 ccgcctcgcg cccgagctcg cgccccaccc acagatcgag gaacgggtgg agaatataga
     4741 tgccggccat gatcggaacg ctgatcgacg cgagcagcac gcgaatggct ttctcgctga
     4801 gcgcgagacg ctcgtccggg ctcgcggtcg gcaggcgcgg gaagaccgca gtgacgagcg
     4861 cgttggggaa aatcgcgatg cgctgggcga gctggaacgg caccgtatag accgtgaccg
     4921 cccgagcccc gagcaccgcg ccgatcgcga accgatcgag gatcacgagg atcggcccga
     4981 acaggccagt aatcgtcacc cagccgccat agccgagcag atccttgatc tgcgagcgat
     5041 cgtagcggac tttctgcccg cgggtgatga ggatatggca gcgccaccac agcaccgcga
     5101 tcgcaacggc gcgcgcggcc accgaggcga tcagcaatcc gctgaggttc gggccccatg
     5161 ccaaagccac ggcgagcggg aagacctgga acaggctggt cgagaggacc gagatcatgt
     5221 tcgtctcgag gaagcggtcg cgcgcctgca gcgccccgct cagcacgccc gtcatcgtcg
     5281 cgatcggcac ggcgagcgcc agatagggca cgctcgccag aatctccggc cttagcctcg
     5341 catccacctt gaagatctgg tcgaagaaga gatcggcggc ggcgtaaagg acgagtccgc
     5401 ccagcgcgcc catgatgatg ttggtgacga tcgcggtcca gaacacgtcg gcgcgatcct
     5461 gcgcggaggc gtccttgagc gccgcgatgc tgtaggtcgt ggccttgccg agccccagat
     5521 cgaaaagccc gaaatagccg agcaacagcc aggcgatcgc gagcacgcca taccggtcag
     5581 tccccaccag cttcaggtag atggggaccg tgacgagcgc gagcaggatc ggcaacaccg
     5641 cgccgatcag attataggtc gcgttacggc tgacgctcat tcgggccggt caggcgacct
     5701 tctgctcaag cggagcttcg gccccggcaa cgccgcggcc gataccataa taagtgaggc
     5761 ccgctttctc cgcctcgaca gggttataga cgtttcgcag atcgacgagc accggccgcc
     5821 gcatcgagcc ggcgaggcgc ttgaggtcga gcgcgcggaa cgcgtcccat tcggttacaa
     5881 gcaccagcgc gtcggcgccg agcgcgacgt cataggggct gtccttgtaa tcgagctcgc
     5941 ccagcgccat gcgcgcctgc tccatgcctt cggggtcgtg cgcggcgaca tccgcccccg
     6001 cctcgcgcag cacgcggaca atgtcgagcg acggcgcatc gcgcatatcg tcggtattgg
     6061 gcttgaaggt aaggcccagc aggccgacgc gcttgccttt cgccgcaccg cccagcgcct
     6121 cgatcacctt atggcccatc gccaccttgc gcagatcgtt cgcctcgacg gtcgagttca
     6181 cgatccggag cggcacgcca tattcctctg ccgtcttcag cagcgccagc gtatccttcg
     6241 ggaagcagga gccgccatag cccgggccgg cgtggaggaa tttgcggccg atccggttgt
     6301 cgaggccaat gccccgcgac acgtccttga tgtcggcgcc gacttcctcg gccagatcgg
     6361 cgagttcgtt gatgaagctg atcttggtcg cgaggaacgc gttcgcggca tatttgatca
     6421 gctcggccgt gcggcggccg gtgaac
//
LOCUS       DASQVK010000342         5319 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_21715, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000342 DASQVK010000000
VERSION     DASQVK010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5319)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5319)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5319
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21715"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..882
                     /locus_tag="VE567_07370"
     CDS             <1..882
                     /locus_tag="VE567_07370"
                     /inference="COORDINATES: protein motif:HMM:NF024844.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase N-terminal
                     domain-containing protein"
                     /protein_id="HYZ48696.1"
                     /translation="SVFDRVKCLWDQSMGELQDWVGKTEERRDVCDAGRVQRLAATLD
                     YSASPWRPGVLPPLGHWLCFLPHERQSLLGEDGHPRRAETGILPNSPLPRRMWAGSRI
                     RFKADIPLDTPLVRTSTLISATPKQGRTGAMLFLTVRHVIAEEGGEAAIVEEQDIVCR
                     EAHRGPVSERTAEPAGAPDPVVRTIAPDPVLLLRYSALTFNAHRIHYDRDYARSIEGY
                     AGLVVHGPLIATLLLDHLLRGDPYAQVKAFQFRAASPVFAGEQMSLGIDRDGNAAALR
                     AISPAGIAMHARAELAP"
     gene            1162..2382
                     /locus_tag="VE567_07375"
     CDS             1162..2382
                     /locus_tag="VE567_07375"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HYZ48697.1"
                     /translation="MAILSDMRIVECGAFIAGPFSTMSLAELGAEVVRIDPLKGGMDY
                     RRWPVTASGQSLYWAGLNKGKKSVAIDTSLAEGQELAQAIITAPGEDRGLFVSNFPAH
                     GWLAYDVLKALRSDLIMVNIVGSRDGSTALDYTVNCAVGFPAATGPVDGDQPVNHVFP
                     AWDFICGQTAATALLAAERYRRRGGPGQHMRIALADIALAIVADMGFVAEVEINGQGR
                     QRYGNHIYGAFGRDFATRDGRRVMVAAVSSGQWKSLCKATGIDDAVSRFEARNSVDLA
                     QEADRFEAREAIASWIEPWFSARTLDEARATLNAHRVCWGPYQNFDQLVTEDPRCSVD
                     SELFARVHHPGIGSTLTPRSPIDFSACEPVPPQAGPLLGQHTDEVLHQVLGLDSASIA
                     ALHDRKIVGGSKCR"
     gene            2373..3248
                     /locus_tag="VE567_07380"
     CDS             2373..3248
                     /locus_tag="VE567_07380"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HYZ48698.1"
                     /translation="MPMIAFLGLGLMGGAVAGRIADAGHDLVVYNRTDDRALNWLARH
                     RAKRAMTPAQAVEEADLVFMCLSNDQAVAQITGEGGGVLAAMKPGALLIDHGSGAPAF
                     ARDLQRAAAERGIAFLDAPVTGGGRAAREGSLTVMAGGDAANLSRARPIMSSYAQEVA
                     LMGPAGTGQATKLLNVILGQAAVCALAEGLGFAMAAGIDPREAVRVLAKGSSQSWVMD
                     NRAGAMIDGHFEPMYPVRMARKDNANVLAEARALGVALPISSAAELLFCELDRRTGGQ
                     DDITSLVKLFAAPRA"
     gene            3396..4583
                     /locus_tag="VE567_07385"
     CDS             3396..4583
                     /locus_tag="VE567_07385"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HYZ48699.1"
                     /translation="MRHGIFLAPLHPVDEDANSLIHRDLELMEWLDRLGFDEAWIGEH
                     HSGGFETIASPELFIAAAVERTKNIRFGTGVISLPYHQPLMVANRIIQLDHQSRGRVM
                     FGFGPGLLVSDAKMLGIDPNTQRDRMAQALDVILRLLDGQTVTEKTDWYNLEEARVHL
                     VPYTQPRPEIAVASAATPSGGRLAGKYDLAMLCVAATDSRGGFNVLDVNWQHACEVAA
                     EHGRTMDRSRLRLMGPMHIAETREKARENVRYGLEKYLEYARTLTPGRFGNFDGRDPV
                     DVMLDSGHIVIGTPDDAVSVLKKLQDKQGEFGAFLHQCHDWADWTETKRSYELYARFV
                     RPHFSNVNVNRVASFDTWKSRSMEFSDASHAAAEATFKKFGKEKQLADAESTGMIGKK
                     STA"
     gene            4713..>5319
                     /locus_tag="VE567_07390"
     CDS             4713..>5319
                     /locus_tag="VE567_07390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017667860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYZ48700.1"
                     /translation="MTDPTPRYFTSNGLRLHYVDWGNGDSPLLLLVHGTRDHSRSWDW
                     VARRLQQSWHVVCVDLRGHGDSDWSPDGDYDRLTLVNDLAEFVYLLGDPPVTIVAHSL
                     GANIALRYAGLFPERTRKLVAIEGLGFSPDKLAERMAIPFVEHWRRWIAAKRAAQGRL
                     QKRYSTIEDAIARMRAANHSLSADRAAHLTVHGTRRNDDGTW"
BASE COUNT          998 a         1637 c         1673 g         1011 t
ORIGIN      
        1 tcagttttcg atcgggtgaa atgcctttgg gaccaatcta tgggcgagct tcaggactgg
       61 gtcggaaaaa ctgaggagcg gcgagacgtc tgcgacgctg ggcgcgtgca aaggctggct
      121 gcaacactcg attattctgc ctcaccctgg cgcccggggg tgctgccgcc gctcggccat
      181 tggttgtgct ttttgccgca tgaacgtcag tccctattgg gcgaggacgg acatcctcgc
      241 cgtgcagaga cgggcatcct gccgaactcg cctttgcctc gacgcatgtg ggccggcagc
      301 cgtatccgct tcaaggccga tattccgctc gacacgccgc tggtacgaac ctccacgttg
      361 atctccgcga cccccaagca aggccggacg ggggcgatgt tgttcctgac ggtgcgccac
      421 gtaatcgcag aggaaggcgg agaagcggcg atcgtggaag agcaggatat cgtctgccgc
      481 gaagcgcata ggggaccagt cagcgagcgt acggcagagc cggccggggc gcccgaccct
      541 gtggttcgca cgatcgctcc cgacccggtg ttgctcctgc gctattcggc gcttaccttc
      601 aacgcgcacc gcattcacta tgaccgcgac tatgcgcgtt ccatagaggg ttatgcgggg
      661 ctcgtggtgc acgggccgtt aatcgcgaca ttgctgctcg atcatttgct gcggggcgat
      721 ccttatgcac aagtcaaagc ctttcagttc cgcgctgctt cgccagtctt tgcgggcgag
      781 cagatgtcgc ttggtataga cagagatgga aacgcagcgg ccctacgagc tataagcccg
      841 gccggcatcg ccatgcacgc gcgggcggaa cttgcgccgt gacccgtaga tgacactcgc
      901 agtcaccggt atctgacgcg tggtatctgg ccctctgaca gactgatcgc cggccacgat
      961 ttgcggggca gtgactcgat gcgcaacatt gcggtccagt cgcgcgccgt tcggccatgg
     1021 ggaaaacgac agctggcgag gcccggctta tgggaacgcg acagaaccgc ggccgatgtg
     1081 catttttcgg cttctattcc gaaatctcat cacctgtgcc ggggccgcgc tgtatggatt
     1141 ggtcgaagaa ggagcgcctt cgtggcaata ttgtccgaca tgcgcatcgt tgaatgcgga
     1201 gcctttatcg ccggcccgtt ttcgacgatg tcattggccg aactcggtgc cgaagtcgtt
     1261 cgcatcgacc cactgaaagg cggcatggat tatcggcgct ggccggtgac cgcttccggg
     1321 cagagcctct actgggccgg cctgaataag ggtaagaagt cggtcgcgat cgacaccagc
     1381 ctggccgaag gccaggagtt agcgcaagca atcatcacgg cgccaggcga ggatcgcgga
     1441 ttattcgtct ccaattttcc ggcgcacggc tggctcgcgt acgatgtgct caaggcgctt
     1501 cgcagcgatt tgatcatggt caatatcgtc ggcagtcgcg atggatcgac ggcactcgac
     1561 tatacagtca attgcgccgt cggttttcct gccgccacag gccctgtgga cggcgaccaa
     1621 ccggtcaacc acgtgttccc agcctgggac ttcatttgcg gtcagacggc tgcaacggcg
     1681 ctgcttgcgg cggagcgcta tcgccgcagg ggagggccgg ggcagcatat gcgaatcgcc
     1741 ctcgccgaca tcgcactcgc catcgtcgcc gacatggggt tcgtggccga ggtcgaaatc
     1801 aacggccagg ggcggcagcg ctatggcaat cacatttacg gcgccttcgg ccgcgacttc
     1861 gcgacgcggg acggccgccg ggtgatggtc gcagccgtca gctccggtca atggaaatct
     1921 ctgtgcaagg cgaccggcat cgacgacgcc gtatcgcggt tcgaagcgcg caacagcgtc
     1981 gacctcgcgc aggaagcgga tcggttcgaa gcgcgcgaag cgattgcctc ttggatcgag
     2041 ccctggttct cggcgcgcac cctggacgag gcccgggcca ctctcaatgc ccaccgcgtg
     2101 tgctggggcc cctatcagaa tttcgaccag ctggtgacag aagatcctcg ctgttccgtc
     2161 gatagcgagc tattcgcccg cgtccatcat cccggcatcg gctcaacgct gacaccacgc
     2221 agccccatcg acttcagcgc atgcgagccg gtaccgcctc aggccggccc actgctcggt
     2281 cagcataccg acgaggtgct tcaccaggta ctaggcctcg acagcgcgtc cattgcggcg
     2341 ctgcacgacc gcaaaatcgt cggcggctcc aaatgccgat gatcgcattt cttggccttg
     2401 gcttaatggg cggggcggtc gccggacgca tcgccgatgc cggacatgac cttgtcgttt
     2461 ataatcggac cgatgatcgc gcccttaact ggctggcacg ccatcgggcg aagcgcgcga
     2521 tgaccccggc ccaagcggtc gaggaagccg atctggtatt catgtgcctt tcgaacgatc
     2581 aagcagtggc gcaaataacg ggtgaaggcg gcggcgtgct cgcagccatg aagcccggcg
     2641 cactccttat cgaccatggg tccggtgcgc ctgcctttgc acgggattta caacgcgccg
     2701 cggccgaacg aggcatcgcc tttctcgacg ccccggtaac gggaggagga agggcagcgc
     2761 gcgagggttc tctgactgtg atggcaggcg gcgacgccgc aaacctgtcg cgagcacggc
     2821 cgattatgag cagctacgcg caggaagtcg cgctaatggg accggcgggg acgggacaag
     2881 cgaccaagct gctgaatgta atccttggac aagccgcggt ctgcgcactg gcggaaggtc
     2941 tgggtttcgc gatggccgcg gggatcgatc cacgcgaggc ggttagagtg ctggccaaag
     3001 gctcatcgca atcatgggtg atggacaatc gcgctggcgc catgatcgat ggacatttcg
     3061 agccgatgta ccccgtacga atggctcgaa aggacaacgc caatgtgttg gcggaggcgc
     3121 gggcgctggg agtggcattg cccatcagct cggccgctga actgctgttc tgcgaattgg
     3181 accgtcgcac aggcgggcag gacgatatta cgagcctggt caagttgttt gcagcgccgc
     3241 gcgcatgagc atccttcgag catcatgcat tatgcggcgg agtctagacg gttcccaatt
     3301 cacagacgtt ctgttagacg gttactattc catattgtat tacaactggc gagctggttc
     3361 gagacggaga gcggtaagaa atgtctagca tgcccatgcg ccacgggatc ttcttggccc
     3421 cccttcaccc ggttgacgag gacgctaaca gcctgatcca tcgcgacctt gagctgatgg
     3481 agtggctcga ccggctcggg ttcgacgagg cctggatcgg cgagcaccat tccggcggct
     3541 tcgagaccat cgcgtctccc gaactcttca tcgccgccgc agtcgagcgt acgaagaata
     3601 tccgcttcgg caccggcgtc atctccctgc cctatcatca gcccttgatg gtcgcgaacc
     3661 gcatcatcca gctcgatcat cagtcccgcg gcagagtcat gttcggcttt ggaccgggct
     3721 tactcgtgtc cgacgccaaa atgctcggga tcgaccccaa cacgcagcgc gatcgcatgg
     3781 cgcaggcgct ggatgtgatc cttcgcctgt tggacgggca aacggtcacc gagaagacag
     3841 actggtacaa tctagaggaa gcccgggtcc atctggtccc ctacacccaa ccgcgccccg
     3901 agatcgcggt cgcgagcgcg gccactcctt caggagggcg cctcgcgggc aaatacgacc
     3961 tggccatgct gtgcgttgcc gcgacggact cgcgcggcgg attcaacgtg ctcgatgtaa
     4021 actggcagca tgcctgcgag gtcgccgccg agcatgggcg cacgatggac cgctcgcgcc
     4081 tgcgcctgat gggccccatg catatcgccg aaacgcgcga gaaggcgcgc gaaaatgtgc
     4141 ggtatggcct cgagaaatac ttggaatatg cgcgcacgct tacgcccggc cggttcggca
     4201 atttcgacgg ccgcgatccg gtcgacgtca tgctggattc cggccatatc gtcatcggaa
     4261 cgcccgacga cgctgtgtca gttctcaaga agctgcagga caagcagggc gagttcggcg
     4321 ctttccttca ccagtgtcat gactgggcgg actggacgga aaccaagcgc tcttacgagc
     4381 tctatgcgcg ctttgtgcgg ccccacttca gcaatgtgaa cgtcaatcgg gttgcctcct
     4441 tcgacacttg gaaaagccgc tcgatggagt tcagcgacgc aagccacgcg gcggccgagg
     4501 cgaccttcaa aaagttcggc aaagaaaagc agctggccga cgccgagagc acgggtatga
     4561 tcggcaagaa atccaccgct taggcgtgtc cagacccggt tgcctggggc caccgcgacc
     4621 gggcgcctcc tcctcgcaga ccatgcccac ggtcgcgatc tagagccggt ccttgtcctg
     4681 tggatgcggc ggcccggtcg gagcacggca gagtgacgga tccaaccccg cgctatttca
     4741 cctccaacgg gctacgtctc cattatgtcg actggggaaa tggcgactcg ccactgctcc
     4801 tgcttgtcca tggcacccgc gatcattccc gcagttggga ctgggttgcg aggcgcttgc
     4861 aacaatcctg gcacgtcgtt tgtgtcgact tgcgtggtca tggcgacagc gactggtctc
     4921 cggacgggga ctatgaccga cttactctgg tcaatgactt ggccgagttc gtctacctcc
     4981 taggcgaccc gccggtcacc attgtcgccc attcgcttgg ggccaatata gcgctgcgct
     5041 atgctggcct gtttcctgaa aggacccgaa agctcgtcgc catcgagggc ctgggctttt
     5101 cgcccgacaa gctggccgag cgaatggcca ttcctttcgt ggagcattgg cgtcgctgga
     5161 tcgctgccaa gcgtgccgct caaggcaggt tgcagaagcg ttattctacg atcgaggacg
     5221 cgatcgcgcg catgcgggca gcaaaccata gcttgagtgc cgaccgcgcc gctcacctga
     5281 cggtccatgg cacccggcgg aacgacgacg ggacttgga
//
LOCUS       DASQVK010000343         3926 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_440237,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000343 DASQVK010000000
VERSION     DASQVK010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3926)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3926)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3926
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_440237"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..621)
                     /locus_tag="VE567_07395"
     CDS             complement(<1..621)
                     /locus_tag="VE567_07395"
                     /inference="COORDINATES: protein motif:HMM:NF045340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48701.1"
                     /translation="MKQAGLAALMLPAAGCLQPATKPEPLPVPKTPELVEQAERSSEL
                     RSTIVPGQAPVPTAPKVTPDPVRPGPIALNLPATDIATVAKSVLGDVLHLPYSIAPGV
                     NGQVTLVTPGPVARESVLPLFEAALRGAGLALSKVGSGYLIQPVAAAQANGPVAPETV
                     GFGTEIVSLQFINGNELKKLVDSVLPGVITSVDQGSNAVTIAGTTGQ"
     gene            complement(665..1111)
                     /gene="gspG"
                     /locus_tag="VE567_07400"
     CDS             complement(665..1111)
                     /gene="gspG"
                     /locus_tag="VE567_07400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004211603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system major pseudopilin GspG"
                     /protein_id="HYZ48702.1"
                     /translation="MAIFRFDGDSAARRGERGFTLLELLVVLAILGLLAAVVGPQVIR
                     YLGTSKTQTAAVQAKNIAAALNLYRLDMGGYPSQAEGLQALVKAPPSATLWNGPYLPD
                     QNALLDPWHKPYQMKVPGDHGEVDVFSLGSDGAPGGSGEARDVGNW"
     gene            complement(1278..2087)
                     /locus_tag="VE567_07405"
     CDS             complement(1278..2087)
                     /locus_tag="VE567_07405"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HYZ48703.1"
                     /translation="MDETIIGGIGNDSLNGGAGNDSISGGAGNDTLIGGTGDDTLAGG
                     SGNDLINGGADNDTMIGGTGNDTLNGGTGDDQAFGGDGNDSILGASGYDSLQGGAGDD
                     TILGGNDDDIIAGGDGFDRLLGGDGNDTIYGNDDEDRLFGDLGDDYLNGGKENDVILG
                     DEGLDTIVGGLGVDTMSGGLDADHFVFNSRDELGLGGLDSRDVITDFTPGEDKIVAAD
                     FHITWDQITLTTHGPTDTIVGFDWDGNGTIDAELQLNNITPDQLSSSDFIL"
     gene            2327..3004
                     /locus_tag="VE567_07410"
     CDS             2327..3004
                     /locus_tag="VE567_07410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48704.1"
                     /translation="MAIISFEHRLIFIKTLKTGGTSLEIELARRLGADAVVTPVIPSV
                     EGHRPRNYRRGLMRRPFYNHIPAARVRQYLGRARYDGMYKFCVEREPVRKCISFFHML
                     RNSPDHRRPGSERLSWTDYVAAGEFPIDLDRYSAVESGRRVLLVDEVIPYEEMQKGLD
                     TVMRRVGIEPFPIAARAKGDYAGERVIGPKDVTAEQRARIYAAFEPSLRIAGLWDRYA
                     GSPASAA"
     gene            complement(2974..3501)
                     /locus_tag="VE567_07415"
     CDS             complement(2974..3501)
                     /locus_tag="VE567_07415"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007679299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HYZ48705.1"
                     /translation="MRALILLWLANHMPPLRWGDKARALLARWAGVRMNGHCSIRAPL
                     EIRPVERAAHVAIGRHCFINSGVRFAVPRARVTIGARCQIGPGVFFETVSHGLVFRPG
                     IGRGDLDGDIVVEDEVWIGARAIIGRGVTIGRGAVIGAGAVVTRDVPTRCFAAGVPAR
                     VVREIDYAAEAGEPA"
     gene            complement(3543..>3926)
                     /locus_tag="VE567_07420"
     CDS             complement(3543..>3926)
                     /locus_tag="VE567_07420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48706.1"
                     /translation="QKPQDIKFEGRHEFALFLPPAPVHKGPPPDPSAAPEPVDPATHI
                     TADPDGLASDAGPKFQRVVDLWPERVEMIAPVDSRIVRLIIIHDIDPDGRRASLYMTR
                     AVDAASMDLEHVYQGSCTISDHRPA"
BASE COUNT          679 a         1274 c         1249 g          724 t
ORIGIN      
        1 ctggccggtc gtcccggcga tggtgacggc gttgctgccc tgatcgacgg acgtgatcac
       61 gcccggcaat accgaatcga ccagcttctt tagctcgttt ccgttgatga actgaagact
      121 gacgatctcg gttccgaacc cgaccgtctc cggcgctacc gggccgttgg cctgggcggc
      181 cgcgacgggc tgaatgagat agccgctgcc aaccttgctc agcgccagcc ccgcgccgcg
      241 caaggcggct tcgaaaagcg gcaggaccga ttcgcgcgcg acagggccgg gcgtgaccag
      301 cgttacctgg ccgttgactc ctggcgcgat ggaataaggc aggtgaagaa catcgccgag
      361 caccgacttg gcaacggtcg cgatgtccgt cgcgggaagg ttgagcgcga tggggcccgg
      421 ccgaaccgga tcgggcgtga ccttgggagc ggtggggacg ggggcttggc cggggacaat
      481 cgtgctgcgc agttccgacg atcgctcggc ctgctcgacc agctccggtg tcttggggac
      541 gggcaggggc tcaggcttcg tcgcgggttg caggcagcct gcggcgggca gcatcaatgc
      601 cgccagcccc gcttgtttca cccaaaccac ccgtgcggat cgagagaatg cggccggtga
      661 ggccctacca gtttccgaca tcccgggctt ccccgctgcc gcccggcgcg ccgtccgatc
      721 ccaggctgaa cacatcgact tcgccgtgat cgcccggcac cttcatctga tagggtttgt
      781 gccatggatc gagcagcgca ttctggtcgg gcagataagg cccgttccaa agcgtggcgg
      841 agggcggcgc cttgacgagc gcctgcagcc cttcggcctg gctgggatag ccgcccatat
      901 cgagtcgata cagattgagc gccgcagcga tgttcttggc ttgcacggcg gccgtctgcg
      961 tcttggaggt gccgagataa cggattacct ggggaccgac gaccgcggcg agcagaccga
     1021 ggatggcgag cacgaccaga agttcgagca gtgtaaaacc acgctcgccg cgcctggccg
     1081 cgctgtcccc gtcaaacctg aagatcgcca ccctgtccca ccgatcgccg gaagcgaaag
     1141 gctgcagcgg ccggccaatg gccgccggcg ccgcacctca ccgtcgcggc ggacactagg
     1201 cgtggtttgc tacacttctg tgtctgaaag gggcccgcaa acgtccctgc ctgcgggcct
     1261 cgtccggctc agaaaattca gagtatgaag tcgctgctgc tcagctgatc gggtgtgatg
     1321 ttgttgagct gcagttccgc atcgatcgta ccgttgccgt cccagtcgaa cccgacgatc
     1381 gtatcggtcg gaccgtgggt ggtcagcgtg atctggtccc aggtaatgtg gaaatcggcc
     1441 gcgacgattt tgtcctcgcc cggcgtgaaa tccgtgatca cgtcccgcga atcaagcccg
     1501 ccaaggccca gctcatcccg agagttgaac acgaagtgat cggcgtcgag cccgccggac
     1561 atcgtgtcca cgcccaagcc gccgacgatc gtgtccaagc cttcgtcgcc gagaattacg
     1621 tcattctcct tgccgccgtt cagataatcg tcgccaaggt cgccgaacag tcgatcctcg
     1681 tcatcgttgc cgtagattgt gtcgttgccg tcgccgccga gcaggcggtc gaaaccgtcg
     1741 ccgcctgcga taatgtcatc atcattgccg ccgaggatcg tatcgtcgcc cgctccgcct
     1801 tgcagcgagt cgtagcctga ggcgccgaga atgctgtcat tgccgtcgcc gccgaaggcc
     1861 tggtcgtcgc cggtcccgcc gttcagcgtg tcgttgcccg tgccgccgat catcgtgtcg
     1921 ttatcggcgc cgccattgat caggtcattg cctgagccgc cggccagcgt gtcgtcgccg
     1981 gtcccgccga tcagcgtatc gttgccggcg ccgccgctga tgctgtcgtt gccggcgcct
     2041 ccattgaggc tgtcgttccc aattcccccg attatcgtct cgtccatgcc tattcccctt
     2101 gtttgacaga aaaagatgcg cgcaatgcga ccgccgttac tgggataggt acgccccctc
     2161 tttacgagct ctttgttaat cgcatggaac gatgacagaa cgccgtcact tctgtgacat
     2221 ggcccgagaa ggtcaaaaat cgcgaggtca ttgcgaaatc cttgacttgc tccctgcaaa
     2281 agatggtcta agtgaccatg gctcttgact gttcatgggt gtggcgttgg caataatcag
     2341 ctttgaacat cgcctgatct tcatcaagac actcaagaca ggcggcacga gtctggaaat
     2401 cgaactggcg cggcggcttg gcgcggatgc cgtggtcacg ccggtgatcc cttccgtcga
     2461 gggacacagg ccccgcaact accggcgcgg attgatgcgc aggccctttt ataatcacat
     2521 ccctgcggcg cgcgtccgtc agtatctcgg gcgcgcgcgc tatgacggca tgtataaatt
     2581 ctgcgtggag cgggagccgg tgcggaaatg catctcgttc ttccacatgc tgcgcaattc
     2641 gcccgatcat cggcggcccg gatccgagcg gctcagttgg accgactatg tcgcagccgg
     2701 cgagttcccg atcgacctgg accgctattc cgccgtcgag agcgggagac gggtgctgct
     2761 cgtcgacgaa gtcattcctt atgaagaaat gcagaaaggc ctcgatacag tgatgcgaag
     2821 ggtggggatc gagcctttcc cgatcgcggc gcgtgcgaag ggagattatg cgggcgagcg
     2881 cgtgatcggc ccgaaggacg tcaccgcgga gcagcgcgcc cgcatctatg cggcattcga
     2941 accgtccctg cggatcgccg ggctctggga tcgctacgcg ggttcgccag cctcggcagc
     3001 atagtcgatc tcgcgcacca ctcgtgccgg cacccccgcc gcgaagcaac gcgtgggcac
     3061 gtctcgcgtg accaccgcgc cggcgccgat cactgcgccg cgcccgatcg tcacgcccct
     3121 ccctatgatg gcgcgcgcac cgatccagac ctcatcttcg acgacgatgt cgccgtccag
     3181 gtcgccacgc ccgatcccgg gccggaaaac caagccgtgc gacacagtct cgaaaaacac
     3241 gcccggcccg atctggcacc gcgccccgat cgtgacgcgc gcccttggga ccgcgaaccg
     3301 caccccgctg ttaatgaagc agtgccggcc gatcgcgaca tgagccgcgc gctcgaccgg
     3361 ccggatttcc aggggcgcgc gaatagagca gtggccgttc atgcgcacgc cggcccagcg
     3421 tgcgagcagg gcgcgcgctt tgtctcccca acggagcggg ggcatgtggt tggccagcca
     3481 aagcaggatc aatgcgcgca tatgtgcttg tcagcgatcg cgcagccgcg aggcaagccc
     3541 gctcaggccg ggcggtgatc cgagatggtg caactgccct gatagacgtg ttcaaggtcc
     3601 atgctcgcag cgtcgacagc acgtgtcatg tagaggctcg cgcgccggcc atctggatcg
     3661 atatcgtgga tgatgatcag ccgcacgatc cgggaatcga ccggggcaat catctccact
     3721 cgttccggcc agagatcgac gacccgctga aacttgggcc cggcatcgct cgccaagcca
     3781 tcgggatcgg ccgtgatgtg cgtcgccggg tcgaccggct ccggtgcggc gctgggatcg
     3841 ggcggcggcc ccttgtggac cggtgctggc ggcaggaaca gcgcgaactc gtgccgccct
     3901 tcgaatttga tgtcctgcgg cttttg
//
LOCUS       DASQVK010000344         4028 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_117086,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000344 DASQVK010000000
VERSION     DASQVK010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4028
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117086"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..242)
                     /locus_tag="VE567_07425"
     CDS             complement(<1..242)
                     /locus_tag="VE567_07425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010160968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HYZ48707.1"
                     /translation="MKSLLLLGAALFAAPALAETVAITGGTVALGDGSAPIPGGTVVI
                     RDGRIVAAGQGVAAPAGARMIDATGKWVVPGFVAGFT"
     gene            complement(239..1651)
                     /locus_tag="VE567_07430"
     CDS             complement(239..1651)
                     /locus_tag="VE567_07430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HYZ48708.1"
                     /translation="MVFNRRVFSALMLGAALAGCASAGAKPQSASTSREKPVTYSRDP
                     YPSTYHAYPGLPTLVTNVTIYDGEGGRINNGQLLFADGKIVAVGQTVAAPAGALTIDG
                     TGKWVTPGIIDIHSHLGDYPSPAVQAHSDGNEATGPVRPEVWAEHSVWPQDPGFSRAL
                     ANGGITTLQVLPGSANLFGGRSVVLKNVPGRTVQSMKFPGAPYGLKMACGENPKRVYG
                     SKNQMPQTRMGNIALDRQTWARAQEYKRKWDKYERDGGEPPTRDIAMDTLRGVLAGEI
                     LVQNHCYRADEMAIVIDMAKEFGYKVAAFHHAVEAYKIADLLKENGICAVVWADWWGF
                     KMESYDAINENLPLLQNAGACVITHSDDPNGIQRLNQETAKAVANGRRMGINIPDEVA
                     WEWLSYNPAKALGIADKTGSLRPGKMADVVLWNGNPFSVYTRPEKVWIDGALMFDALD
                     PKRRPVTDFELGQPGEGDVK"
     gene            complement(1638..3446)
                     /locus_tag="VE567_07435"
     CDS             complement(1638..3446)
                     /locus_tag="VE567_07435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016747036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015333 - peptide:proton symporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide:H+ symporter"
                     /protein_id="HYZ48709.1"
                     /translation="MVNVNADETFEPQPPHVGRSDSDVWFGHPRQLARLFTTEMWERF
                     GYYGMRALLALYLTKHFLFSDQTTTGLYGGFTALVYLTPLVGGLLADRYLGSKKSVKF
                     GAILMSLGYFILCFGGPTAKPHAIIGGQRYEVAVENFVDRPTSTGEERRYVINGDQKL
                     LIKGNEDGSVSLLKPDGGVAQTLPKGAFEAGGDRPLLFVLLMLTGLSMVTVGNGFFKP
                     NISTIVGTLYAQGDRRRDAGFTIFYMGINLGSLFSQLLCPLLADTVGWWAGFGLAALG
                     MLFSWGLIQFDGGKLAGYGEPPPQDGPRRDIVIYLGALIAIPVALFLFWNLMSAPPAA
                     AGSGIVGYLLALPLMGKILFFTFLLSVPGILIWAARAGNRVEFQMMLAAMVLIVFNVV
                     FWTLFEQAGSSLTLFADRNTELSVFGLFSISAGQTQFFNAFFIVALAPFFSMMWNALA
                     RRGIEPSIPIKFAIALMGVGAGFLFLVWGAHFAGPDFKVALWWLAGLYLIHSAAELCI
                     SPVGLSMITKLSIARIVGLMMGVWFLSISVAQYVAGIVAQVASVETVGGQVTNLKVSL
                     DTYANVFWTIGLASVVIGAVLFLLSPVIKKWMHGVQ"
     gene            complement(3536..>4028)
                     /locus_tag="VE567_07440"
     CDS             complement(3536..>4028)
                     /locus_tag="VE567_07440"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HYZ48710.1"
                     /translation="RDGKPSKATVAPEPGCTTEFLIGRGRGLRSASSDGARITVSAEI
                     VEFAQSDDELALVMAHELSHNILGHNRGYAAQRIAGTDLSGARGRDHEREADRWALYL
                     LARAGYDPGVAPGFWRRWGPRTDLGILGDGSHPDWRDRAQRAEAELERIRAQQAAGEV
                     PIP"
BASE COUNT          759 a         1319 c         1284 g          666 t
ORIGIN      
        1 gtgaagccgg cgacgaagcc cggcaccacc catttgccgg tcgcgtcgat catgcgcgcg
       61 ccggccggcg cggcgacacc ctgccccgcc gcgacgatcc gcccgtcgcg gatcaccacg
      121 gtgccgccgg gaatcggcgc cgagccgtcg cccaaggcga ccgtaccgcc ggtaatcgcg
      181 accgtttcgg cgagagcggg ggccgcgaac agggccgcgc ctaagagcaa cagcgacttc
      241 acttcacatc tccctcgccc ggctggccga gctcgaaatc ggtcacaggg cggcgcttcg
      301 ggtcgagcgc atcgaacatc agcgcgccgt cgatccagac tttctcgggc cgcgtgtaaa
      361 cgctgaacgg attgccgttc cacagcacca cgtccgccat cttgccgggc ctgaggctgc
      421 ccgtcttgtc ggcaatgccg agcgccttgg cgggattgta gctgagccac tcccaggcga
      481 cttcgtcggg gatgttgatg cccatgcgcc ggccgttcgc gaccgccttg gccgtttcct
      541 ggttcagccg ctggatgccg ttggggtcgt ccgaatgagt gatgacgcaa gcgccggcat
      601 tctggagcag cggcaaattc tcattgatcg cgtcatagga ctccatcttg aagccccacc
      661 agtcggccca gacgacggcg cagatgccgt tttccttcag caaatcggcg atcttgtacg
      721 cttcgacggc gtggtggaat gccgcgacct tgtagccgaa ctccttggcc atatcgatca
      781 cgatcgccat ttcgtcagcc cggtagcaat ggttctgcac aaggatttcg ccggcgagca
      841 cgccgcgcaa tgtgtccatg gcgatgtcgc gcgtgggcgg ctcgccgccg tcgcgctcat
      901 atttgtccca tttccgctta tattcctgcg ctcgcgccca ggtctgccgg tcgagggcga
      961 tattgcccat ccgcgtctgc ggcatctggt tcttcgaacc atagacccgc ttcgggtttt
     1021 cgccgcacgc cattttaagg ccgtagggcg ctccggggaa tttcatcgac tgcaccgtgc
     1081 ggcccggcac gttcttcagc accaccgatc ggccgccgaa caggttggcg gagcccggca
     1141 gcacctgcag cgtggtgatc ccgccattgg cgagcgcgcg gctgaagccc ggatcctgcg
     1201 gccagacgct atgctcggcc cagacttcgg ggcggaccgg gccggtcgcc tcgttgccat
     1261 ccgaatgggc ctgcaccgcg ggcgacggat agtcgcccag atggctgtgg atgtcgataa
     1321 tgccgggcgt cacccatttg ccggtgccgt cgatcgtcaa cgctcctgcc ggcgcggcga
     1381 cggtctggcc cacggccacg atcttgccgt cggcgaacag cagctggccg ttgtttatcc
     1441 gcccgccttc gccgtcataa atggtgacgt tggtgacgag cgtcggcagg cccggatagg
     1501 cgtgataggt cgaagggtac ggatcccgcg aataggtgac cggcttttcc cgggacgtcg
     1561 aggccgactg cggcttcgcg cccgccgacg cgcagccggc cagcgccgcg cccagcatca
     1621 gcgcggaaaa aacccttcta ttgaacacca tgcatccact tcttgatgac aggagagagg
     1681 aggaacagga cagcgccgat cacgaccgaa gcaaggccga tcgtccagaa cacgttcgca
     1741 taggtgtcga ggctgacctt caggttagtg acttgcccgc cgaccgtctc gacgctcgcc
     1801 acctgggcca cgatgccggc cacatattgc gcaaccgaga tcgagaggaa ccagacgccc
     1861 atcatcaggc cgacgatccg cgcgatggag agctttgtga tcatcgacag gcccacgggc
     1921 gaaatgcaaa gctccgcggc cgagtggatc agatagagcc ccgcgagcca ccacaaggcg
     1981 accttgaagt ccggccccgc aaaatgcgcg ccccagacga ggaagagaaa gccggcgccc
     2041 acgcccatca gcgcgatggc gaatttgatc ggaatgctgg gctcgattcc ccgccgcgcc
     2101 aacgcgttcc acatcatgct gaaaaagggc gcgagcgcga cgatgaagaa cgcgttgaag
     2161 aactgcgtct gcccggccga gatactgaac agcccgaaca ccgacaattc ggtgttgcga
     2221 tcggcgaaca gagtcagcga ggagcctgcc tgctcgaaca gcgtccagaa cacgacgttg
     2281 aagacgatca gcaccatcgc cgccagcatc atctggaact cgacgcggtt gcccgcgcgt
     2341 gcggcccaga tcaggattcc cggcaccgag aggaggaacg tgaagaagag gattttcccc
     2401 atcagcggga gcgcgagcag atagccgacg atgcccgagc ctgcggcagc gggtggcgcg
     2461 ctcatcaggt tccagaacag gaagagggcg accgggatgg cgatcaacgc gcccagatag
     2521 atgacgatgt cgcggcgcgg cccgtcctgc ggcggcggtt cgccatagcc ggcgagcttg
     2581 ccgccatcga actggatcag cccccaggag aacagcatcc cgagcgcggc gaggccgaag
     2641 ccggcccacc agccgaccgt gtcggcgagc agcggacaca gaagctggga aaacaacgag
     2701 cccaggttga tacccatgta gaatatggtg aagcccgcat cgcgtcgccg gtcgccctgc
     2761 gcataaagcg tcccgacgat cgtcgagatg ttcggcttga aaaagccgtt gccgacagtg
     2821 accatcgaca ggccggtcag catcagcagc acgaacagca ggggccgatc gccgcccgct
     2881 tcgaacgcgc ctttcggcag tgtctgggcg acgccgccat cgggcttcag cagcgaaacg
     2941 ctgccatcct cattgccctt gatcagcagc ttctgatcgc cgttgataac atagcgccgt
     3001 tcttcgccgg tgctcgtcgg gcgatcgacg aaattctcga cggcgacttc gtagcgctgg
     3061 ccgccgatga tcgcgtgcgg cttggccgtg ggtcccccga aacaaaggat gaagtaaccg
     3121 agcgacatca ggatcgctcc gaatttcacc gactttttcg agccaagata gcgatcggca
     3181 aggagaccgc cgacgagcgg cgtcagatag acgagcgcgg tgaagccgcc atagaggccg
     3241 gtcgtggtct ggtcgctgaa gaggaagtgc ttggtcagat agagcgccag cagcgcccgc
     3301 atgccgtaat agccgaaccg ctcccacatt tcggtggtga agagccgcgc gagctgtcgc
     3361 ggatgaccga accagacgtc gctgtcgctt cggccgacat gcggtggttg cggctcgaac
     3421 gtctcgtccg cgttcacatt gaccatgaag atccttcccc aaaccctcgg ctgctcgggc
     3481 ggccgtgttg gcgcgcgagc ctagcgccga aaacggcgct gccaagtacc agttgttacg
     3541 gaattggaac ctcgcctgcg gcctgctggg cgcggatgcg ttcgagctcc gcttcggctc
     3601 gctgggcgcg gtcgcgccaa tcgggatgcg agccgtcgcc aagaatgccg agatcggtcc
     3661 gcggccccca acggcgccag aagccgggag cgacgccagg atcatagccg gcccgcgcaa
     3721 gcagatagag cgcccagcga tcggcttcgc gctcatggtc gcgccctcgc gcgccgctca
     3781 ggtccgtgcc tgcgatgcgc tgcgctgcgt agccgcgatt atggccgagg atgttgtgag
     3841 agagctcatg cgccatcaca agcgccagct cgtcatcgct ctgggcgaat tcgacgatct
     3901 cggcagagac ggtgatgcgg gcgccgtcgc tcgaagctga acgcaagcca cgaccgcgac
     3961 cgatcaggaa ctcggtcgtg cagcctggct ccggcgcaac agtggctttg ctcggcttgc
     4021 cgtcgcga
//
LOCUS       DASQVK010000345         2453 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_369459,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000345 DASQVK010000000
VERSION     DASQVK010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2453)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2453)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2453
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_369459"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..292
                     /locus_tag="VE567_07445"
     CDS             <1..292
                     /locus_tag="VE567_07445"
                     /inference="COORDINATES: protein motif:HMM:NF018508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="YkvA family protein"
                     /protein_id="HYZ48711.1"
                     /translation="KARRVASKLPFAEDLLAAYYCAFDRATPFHVKAALLGALAYFVL
                     PFDAVADVLPMLGYTDDAAVLVTALRLVAGHIQPEHREAAREALAHGLTDTP"
     gene            307..1989
                     /locus_tag="VE567_07450"
     CDS             307..1989
                     /locus_tag="VE567_07450"
                     /inference="COORDINATES: protein motif:HMM:NF015649.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYZ48712.1"
                     /translation="MAKSDPRPSSAAIPQMLMEGVGHYREGRHAEAEKICSRVLKLMP
                     NQIDALHLLGVIRLDGGKPAAALVLFQSALKVDPASAAVLCNLGRALATLNRDEEALI
                     ALDKALASSPNSFEALNGRGIVLLKLNRATDALGMFERAARIEPRFIGSRMNLGNALA
                     QLGRFEEALAEFEAVLASAPAQPDAHYGIGTALIGLGRHAEAIAAYDRALTLRPKHLK
                     ALISRGVARMALNHYQEALADFGAVLASDKNNADVQHNEALALLTLGDYRRGFEKYEH
                     RWQRTGMAGRRRSLGKPLWLGEYPLQRKTILLHAEQGLGDTIQFVRYAPLLARAGAKV
                     VLEVQLELAALLARTEGVAAVVTRGDALPPFDVHCPVGSLPRALRTEPSSIPANVPYL
                     AASEERIAKWRERIARWPSPRIGIVWSGSASHPNDRNRSIALTKLAPVFRSEHGSFVS
                     IQRDLRDGEREALASVPGLAHLGDDLEDFEDTAALVSLLDLVISVDTSVAHLAGALAR
                     PTWILTPFAPDWRWMLGREDSPWYPSVRLFRQSAPGDWDSVITRVRDELARV"
     gene            complement(2021..>2453)
                     /locus_tag="VE567_07455"
     CDS             complement(2021..>2453)
                     /locus_tag="VE567_07455"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HYZ48713.1"
                     /translation="AHGADEGVNYTRDNLRDALKSLGGEHGIDVIFDPVGGPYSEGAL
                     RAIAWEGRHLVVGFAAGEIPKLPLNLMLLKGCSVIGVYFGDWVRLEPDAYQASITELT
                     RWAAEGKLSCHIDRVYPLAETPAALKALTQRKAMGKVIVQP"
BASE COUNT          407 a          821 c          777 g          448 t
ORIGIN      
        1 caaagccaga cgtgtcgcca gcaagcttcc gttcgcggag gatcttctcg ccgcatacta
       61 ctgcgcgttt gatcgtgcca cgccgttcca cgtaaaggcg gcgctgctcg gcgcgctcgc
      121 ctatttcgtg cttccgttcg acgccgtggc ggatgtgctg ccgatgcttg gttatactga
      181 cgatgccgcc gtgctggtca ctgcgctgcg tctggttgcc ggccatattc agcccgaaca
      241 tcgcgaagcc gcccgggagg ccttggccca cgggctcacc gacacgccct aaaacgctcc
      301 gtgctcatgg ccaagtccga cccgcggccg agctctgccg caatcccgca gatgttgatg
      361 gaaggggtcg gtcactaccg cgagggccgg cacgcggaag cggaaaagat ctgctcgcgc
      421 gtgctcaagc tgatgccgaa tcaaatcgac gcgctgcacc tgctcggcgt catccggctc
      481 gatggcggca agcccgccgc tgcactggtg cttttccagt ctgcactcaa agtcgacccg
      541 gcctccgctg cggtgctttg taatcttggg cgcgcgcttg ccacgctcaa ccgcgacgaa
      601 gaagcgctga ttgcgctcga caaggcactt gcctcgagtc cgaacagttt cgaggcgctc
      661 aacgggcgcg gcatcgtcct gttgaagctc aatcgggcga ccgatgcgct cggcatgttc
      721 gaacgcgccg cgagaatcga gccgcgcttt atcgggtcac gcatgaatct cggcaacgcg
      781 ctggcgcagc ttggccggtt cgaggaagcg ctggccgaat tcgaagctgt gcttgcatcg
      841 gcgccggcgc aaccggacgc gcactacggc atcggcaccg ctttgattgg acttgggcgc
      901 catgcggagg ccatcgctgc ctatgatcgc gccttgacgt tgcggccgaa gcatctgaag
      961 gcgctcatca gtcgcggggt ggcccggatg gccctgaatc actatcagga ggccctcgcc
     1021 gacttcggcg cggtgctcgc gagcgacaag aacaacgccg acgtgcagca taacgaggcc
     1081 ctcgccctgc tcacgctcgg cgactatcgg cgcgggttcg agaaatacga acaccgctgg
     1141 cagcgcaccg gaatggcggg gcgccggcgc agccttggta agcctctctg gctcggcgaa
     1201 tacccgctgc aacgcaagac catcctgctg catgccgagc aaggtctcgg cgacacgatc
     1261 caattcgtcc gctatgcgcc gctgcttgca cgcgcaggcg ccaaagtcgt gctcgaggtt
     1321 cagctcgaat tggcggcgct gctcgcgcgg acggagggcg tcgctgccgt tgttactcgt
     1381 ggcgacgccc tgccgccctt cgacgtgcac tgcccggtgg gcagcctgcc ccgtgcgctg
     1441 cggacggagc cgtcaagcat tccggccaac gtgccttatc tcgccgcaag cgaggagcgt
     1501 attgcgaagt ggcgcgagcg catcgcccgc tggccctcgc cgcgcatagg cattgtgtgg
     1561 tcgggcagcg ccagccatcc gaatgaccgc aatcgttcga tcgcgcttac gaagcttgcg
     1621 ccggtatttc gaagcgagca cggctcattc gtgagcatcc aacgcgacct gcgcgacggc
     1681 gagcgcgaag cactggcgtc cgtgccgggg ctggcgcatc tgggcgatga tctcgaggat
     1741 ttcgaggaca ccgctgctct cgtctcgctc ctcgacctcg tcatttcggt cgatacatca
     1801 gttgcgcatc tcgccggcgc gcttgcgcgc cccacctgga ttctgacgcc cttcgcgcca
     1861 gactggcgct ggatgctcgg tcgcgaagat tccccctggt atccgagcgt gcggctcttc
     1921 cgccagtctg cgccgggtga ctgggacagt gtcatcacca gagtgcgtga cgaactcgcg
     1981 cgggtatagg aagcggacgc ctggccggaa accgcgagag tcacggctgc acgatcacct
     2041 tgcccatagc cttgcgttgc gtcagtgctt tcagcgccgc cggcgtctcg gcgagcggat
     2101 agacgcgatc gatgtggcat gagagcttgc cctcggcagc ccagcgggtg agttcggtga
     2161 tgctcgcctg gtaggcgtcc ggctcgagcc gaacccagtc gccgaaatag acaccgatca
     2221 cgctgcagcc tttgagcagc atcaggttga gcggcaactt cggaatttcg ccggccgcga
     2281 atcccacgac cagatggcga ccctcccacg cgatcgcccg caaggctccc tcgctgtacg
     2341 gcccgccgac ggggtcgaag attacatcga tgccatgctc gccgccgagg ctcttgagcg
     2401 catcgcgcag attgtcgcgc gtatagttca ccccctcgtc ggcgccatgc gca
//
LOCUS       DASQVK010000346         4148 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_338159,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000346 DASQVK010000000
VERSION     DASQVK010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4148)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4148
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338159"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            239..709
                     /locus_tag="VE567_07460"
     CDS             239..709
                     /locus_tag="VE567_07460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HYZ48714.1"
                     /translation="MTAIDGKGRVAIPASMRAVIEKNVEAGGGDPRTVVIALHPQDAC
                     LIAYDPAWLKLSHARLERREEAREAEGEALDYNAKRRALALTESAGFDASGRFVLPDF
                     YAMKAKLLPGTDAVFSGAGNFFEIWNPDVLLAAEGVDPSLKELVEFTRAKRGAK"
     gene            706..1638
                     /gene="rsmH"
                     /locus_tag="VE567_07465"
     CDS             706..1638
                     /gene="rsmH"
                     /locus_tag="VE567_07465"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010183790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HYZ48715.1"
                     /translation="MSAHTPVLLDEVIDALAIQPGERHVDGTFGAGGYTRAMLAKGAR
                     VYAFDRDPQAIAAGRAMAGERLILTERRFSEMEEALAELDAVPVDGVTLDIGVSSMQF
                     DQAERGFSVQADGPLDMRMEQAGMTAAEWLNSADEAEIADVIYEYGEERRSRRIARAI
                     VAARPLARTIELAAVVRKAVGYVAGKDKDPAVQVFQAIRIHLNRELDELKGGLEAAER
                     VLAPGGRLAVVTFHSLEDRIVKQFLRDRSGAAPAGSRHLPATTKGRPSFEAVGKAVRP
                     SANEIAANPRARSATLRVARRTDAQAWGQRGEAA"
     gene            1635..2255
                     /locus_tag="VE567_07470"
     CDS             1635..2255
                     /locus_tag="VE567_07470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48716.1"
                     /translation="MITRRLRPIGWVAGVAGAALCLYLVSLQVAAERAALESVERKIT
                     LTQRQIRSLETEFSARASLRQLEAYNQEVLALAAPKVGQYLANEVQLASYSPADGAAI
                     GKPAASTALASAEATPPPAARPTLRPAVVTDVKDQGAPVIPAVRRPPLIQTVAMIEPV
                     VAPSLVPANPKPSAKAPSAAKVALLDDAAVREIAREAAKERKAHRP"
     gene            2252..3940
                     /locus_tag="VE567_07475"
     CDS             2252..3940
                     /locus_tag="VE567_07475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HYZ48717.1"
                     /translation="MTAIAAPRSAQLRAQPERHSELALAQFRLMLLMLLFIGATAAIG
                     MRIAYLTVFADGSTNRAQAGAIARGDILDRNGIPLAQTIDAWSIGIHPARVIGDKRKL
                     SEALARLMPERSADDYRRILNSRLTFTYLRRRATPDLVAAVNRLGEPGVDLGREPERI
                     YPQGMLAAHVLGFTDVSGGGVSGMEKVLEHQLTGPARGSGVMLSIDSRVQQALEAELG
                     AAMAKFSAIGAAGVVMDIKTGEVVALTSLPELNPNKPAQQGPDAAFNRATLGVYELGS
                     TFKPFTVAMAMEEGVIRDLGQTYNCPRVLQVGRFSITDTHPFGRTCTVAEIMQESSNI
                     GTAQIAAQVGANRQREWLRRMHFLEKVSIELPERGRPLNPGANWGDIATMTVGFGHGI
                     AVSPLHLATGYATLFNGGVWRPATLLKHDRRNPVLQGQRVFSEATSYKMRALLRLVVT
                     SGTGRKADAPGYRVGGKTGTAEKIAGGRYTSAAVVTTFAGVFPMDEPRYVVVAMLDDP
                     KATKDTYGFHTAGWNVAPVVSNVVSRIGPMLGVMPDPSREANMAEVMPFVHAKE"
     gene            3944..>4148
                     /locus_tag="VE567_07480"
     CDS             3944..>4148
                     /locus_tag="VE567_07480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase domain-containing protein"
                     /protein_id="HYZ48718.1"
                     /translation="MRLRELAGIDSDTTVTGFAIDHRKVAPGSIFGAFRGQRFNGEDF
                     IPQAIAAGAAAIVAGPEARVEGAP"
BASE COUNT          687 a         1380 c         1426 g          655 t
ORIGIN      
        1 aaggccgagg cccaccttaa acgcgacatt tcgcgccttt tctcccggat tttcccgtaa
       61 aatcccgttg tatcccgtgc tcgcccgcta tatgtattta catacaggcg gggcgattcc
      121 tttgtgcgag tcgtgaccgg gaagtcgcct tgaagcggtg cttcccggcg tacggcggtt
      181 tgcgcccggc cctgagaggt gtgcgttggg cgaacgggaa gcctttaatg ggtttgcgat
      241 gaccgcgatc gacggcaagg gccgcgtcgc gatccccgcg tccatgcgcg ccgtcatcga
      301 gaagaatgtg gaagcgggcg gcggcgatcc ccgcaccgtc gtcatcgcgc tccaccccca
      361 ggatgcctgc ctgatcgctt acgaccccgc ctggttgaag ctcagccacg cacgcctgga
      421 gcggcgcgag gaagcgcgcg aggccgaagg cgaggcgctc gactataacg ccaagcgccg
      481 ggcccttgcc ctcactgaat cggcgggttt cgacgcgagc ggccgtttcg tgctccccga
      541 tttctatgcg atgaaggcaa agctgctgcc cggcaccgac gcggtcttct cgggcgccgg
      601 caatttcttc gagatctgga acccggacgt gctgctcgct gccgagggcg tcgacccgtc
      661 gctcaaggag ctggtcgagt tcacgcgcgc caagcgaggc gcgaaatgag cgcgcacact
      721 cccgttctgc tcgacgaagt gatcgatgca ctcgcgatcc agccgggcga gcgccacgtc
      781 gacggcacgt tcggcgccgg cggatacacg cgcgcaatgc tggccaaggg cgcgcgggtc
      841 tatgccttcg atcgcgatcc gcaggcgatc gcggccggcc gggcgatggc cggcgagcgg
      901 ctgattctga ccgagcggcg attctccgag atggaggaag cgctggccga gctcgacgca
      961 gtgccggtcg acggcgtgac gctcgatatc ggcgtctcgt cgatgcagtt cgaccaggcg
     1021 gagcggggct tctcggtcca ggcggacggt ccgctcgaca tgcgcatgga gcaggcgggc
     1081 atgaccgcgg ccgaatggct gaacagcgcg gacgaagccg agatcgccga cgtcatctac
     1141 gaatatggcg aggaacgccg ctcgcgccgg atcgcgcggg cgatcgtcgc ggcgcgcccg
     1201 ttggcgcgca cgatcgaact cgcagcggtg gtccgcaagg ccgtcggcta tgtggcgggg
     1261 aaggacaagg atcccgcagt ccaggtgttc caggcgatcc gaattcatct gaaccgcgag
     1321 ctcgacgagc tgaagggcgg gcttgaagcg gcggagcggg tgctcgcccc gggcggacgg
     1381 ctcgccgtgg tcactttcca cagcctggaa gaccggatcg tgaagcaatt cctgcgcgat
     1441 cgcagcggcg ctgcccctgc cggatcgcgg catctgccgg ccacgacgaa gggtcggccc
     1501 agtttcgaag cggtgggcaa ggcggtgcgg ccgagcgcca atgagatcgc ggcaaacccg
     1561 cgcgcgcgct cggctacact ccgggtcgcg cggcgcaccg atgcccaagc ctggggccaa
     1621 aggggagaag cggcatgatc acgcggcgat tgcgtccgat cggctgggtg gcaggcgtcg
     1681 ccggcgcggc gctctgcctc tacctcgtct cgctgcaagt cgcggccgag cgtgctgcgc
     1741 tggaaagcgt cgagcgcaaa atcacgctca ctcagcgcca gattcgcagt ctggagaccg
     1801 agttcagcgc acgcgcgagt ctcaggcagc tcgaagccta taaccaggaa gtgctggcgc
     1861 tcgccgcgcc caaggtcggc caatatctgg cgaacgaagt gcagcttgcc tcctattcgc
     1921 cggcggacgg tgccgccatc ggcaagccgg cggcttccac cgcgctcgcc agcgccgaag
     1981 cgacgccgcc gcccgctgcg cgcccgacgc tccggccggc ggtggtgacc gatgtcaagg
     2041 accagggcgc cccggtgata ccggccgtca ggcgtccccc gctgatccag accgtcgcga
     2101 tgatcgagcc ggtcgtggct ccgtcgctcg tacccgccaa tcccaaaccg tccgccaagg
     2161 caccgagtgc cgccaaggtc gcgctgctcg acgatgctgc cgtgcgcgag atcgcgcgcg
     2221 aggcggcgaa agagcggaag gcccaccggc cgtgaccgca atcgcagcgc cgcgctccgc
     2281 ccagctccgc gcccagcccg agcggcattc ggagctggcg ctggcgcaat tccggctgat
     2341 gctgctgatg ctgctgttta tcggcgcgac ggcggcgatc gggatgcgca tcgcctatct
     2401 gacggtgttc gccgacggca gcaccaaccg cgcccaggcc ggcgcgatcg cccgcggcga
     2461 cattctggac cgcaacggca ttccgctcgc ccagacgatc gacgcctggt cgatcggcat
     2521 ccaccctgcc cgggtgatcg gcgacaagcg caagctctcc gaggcattgg cgcggctgat
     2581 gccggagcgc agcgcggacg attatcggcg catcctgaac tcccgcctga ccttcaccta
     2641 cctgcgccgc cgcgcgacgc cggacctggt ggcggcggtc aaccggctcg gcgaaccggg
     2701 cgtcgatctc ggccgcgagc cggagcgcat ctatccgcaa ggcatgctgg cggcccatgt
     2761 gctgggcttt accgatgtaa gcggcggcgg cgtgtccggc atggaaaaag tgctggagca
     2821 ccagctcacc ggcccggcgc gcggcagcgg cgtcatgctg tcgatcgata gccgcgtgca
     2881 gcaagccctg gaggcggagc tcggcgccgc gatggcgaag ttcagcgcga tcggtgcggc
     2941 cggcgtggtg atggacatca agacgggcga agtggtcgca ctcacttcgc tgcccgagct
     3001 caatccgaac aagccggcgc agcagggccc cgacgcggcg ttcaaccgcg ccacgctcgg
     3061 cgtgtacgag ctgggttcca ccttcaaacc cttcaccgtc gcgatggcga tggaggaggg
     3121 ggtcatccgc gacctcggcc agacttataa ttgtccgcgc gtgctgcagg tcggtcgctt
     3181 ctcgatcacc gacacgcacc cgttcggacg cacctgcact gtcgccgaga tcatgcagga
     3241 atcctcgaac atcggcaccg cgcagattgc cgcgcaggtg ggtgcgaaca ggcagcgtga
     3301 atggctgcgg cgcatgcatt tcctggagaa agtctcgatc gagctgcccg agcgcgggcg
     3361 cccgctgaac ccaggcgcga actggggcga tattgcgacg atgacggtcg gctttggcca
     3421 cggcatcgct gtgtcgccgc tgcacctggc gaccggctat gccactttgt tcaacggcgg
     3481 agtgtggcgg ccggccacgc tgctgaagca tgacaggcgc aatcccgtcc tgcagggtca
     3541 acgcgtgttt tcggaagcaa cctcatacaa gatgcgcgca ctgcttcgtc tggtcgtgac
     3601 gtcgggcact ggccgcaagg ccgatgcacc cggctaccgg gtcggcggca agacagggac
     3661 tgccgaaaag attgcgggcg gccgctatac aagtgccgct gtggtgacca cgtttgccgg
     3721 ggtcttcccg atggacgaac cgcgctatgt ggtggtcgcg atgctcgacg atcccaaggc
     3781 gaccaaggac acttacggct tccacaccgc cggctggaac gtcgcgccgg tcgtctcgaa
     3841 cgtcgtcagc cgcatcgggc cgatgctggg cgtgatgccc gacccgagcc gtgaggcgaa
     3901 catggcggag gttatgccct tcgtccacgc gaaggaatga tcggtgcggc tgcgggagct
     3961 tgccggcatc gattctgaca cgacagtcac cggattcgcg atcgaccacc gcaaagtcgc
     4021 tcccggctcg attttcggcg cctttcgcgg gcagcgcttc aatggtgagg acttcatccc
     4081 tcaggcgatc gcggcgggcg ctgcggcgat cgttgccggg cccgaagcgc gggtggaagg
     4141 ggcgcccc
//
LOCUS       DASQVK010000347         2113 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_440517,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000347 DASQVK010000000
VERSION     DASQVK010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2113
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_440517"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..570
                     /locus_tag="VE567_07485"
     CDS             <1..570
                     /locus_tag="VE567_07485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008071693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HYZ48719.1"
                     /translation="NYFPDWSPFKKFLLMAGALIGGYKAPDIYIKNKIKKRSDAIRKG
                     LPDALDLLVICAEAGLTVDAAFGRVAKELGKGYPELGDEFMLTSIELGFLTERRQAFE
                     NLATRVDLEAVRGVVTTMIQTEKYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIM
                     TVPLICFILPTLFVVILGPAACSIADNFK"
     gene            624..923
                     /locus_tag="VE567_07490"
     CDS             624..923
                     /locus_tag="VE567_07490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48720.1"
                     /translation="MADFTPQFWLILGLTLVLGWVLGLMSRSGGGRWRRELAEERRAH
                     EAYRRDAEARIAELERTRGAAVNPDYVPATSAELRPGERIEVDEHGNRVIRPIRA"
     gene            complement(920..>2113)
                     /locus_tag="VE567_07495"
     CDS             complement(920..>2113)
                     /locus_tag="VE567_07495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PEP-binding protein"
                     /protein_id="HYZ48721.1"
                     /translation="AKAKQFRIGDRTIKEGEIITIDGATGEVMAGEVPTVQPELAGDF
                     GTLMEWADKVRRMRVRTNAETPLDCRTARGFGAEGIGLCRTEHMFFDAARITAVRQMI
                     LASDEKGRRAALAKLLPEQRSDFAEIFEIMAGLPVTIRLLDPPLHEFLPHEEEEFVEV
                     AAASGVGVEALRRRAAELHEFNPMLGHRGCRLGVTYPEIYEMQARAIFEAAVEVAEKT
                     GAAPIPEVMVPLVATRRELELMKELIDRTAEAVFAEKGRRIEYLVGTMIELPRAALKA
                     GEIAEVGAFFSFGTNDLTQTTLGVSRDDAGRFLTAYVDKGIFPRDPFVSLDVEGVGEL
                     ISLAAERGRKTRSELKLGICGEHGGDPASIAFCEQAGLDYVSASPYRVPIARLAAAQA
                     ALKRS"
BASE COUNT          342 a          707 c          706 g          358 t
ORIGIN      
        1 aattatttcc cggactggag cccgttcaag aagttcctgc tgatggcagg cgcgctgatc
       61 ggcggctaca aggcgccgga catctacatc aagaacaaga tcaagaagcg cagcgacgcg
      121 attcgcaagg gcctgccaga cgcgctcgac ctgctcgtca tctgcgctga ggcgggcctt
      181 accgtcgatg ccgctttcgg ccgcgtggca aaggagttgg gcaaaggcta tccggagctg
      241 ggcgacgagt tcatgcttac ctcgatcgag ctgggcttcc tgaccgagcg gcgccaggcg
      301 ttcgagaacc tcgccacccg cgtcgatctg gaagcggtgc gcggcgtggt tacgaccatg
      361 atccagaccg agaaatacgg tacgccactc gcctccgcgc tgcgcgtgct ttcggccgag
      421 ttccgcaacg agcgcatgat gcgcgccgag gagaaagcgg cgcggctgcc ggcgatcatg
      481 accgtgccgc tgatctgctt cattctgccg acattgttcg tcgtgatcct gggccccgcg
      541 gcctgctcga tcgccgataa cttcaaataa ggaacggcgg caccgccccg gtcgtttctc
      601 ccctgcaaca tgggagagat gccgtggccg actttacgcc gcaattctgg ctgatcctgg
      661 ggctcacgct cgtgctcggc tgggtgctgg ggctgatgtc ccgctccggc ggcgggcgct
      721 ggcgtcgcga gcttgccgag gaacgccgcg cccacgaagc ctatcgccgc gacgccgagg
      781 cccgcatcgc ggagctggag cggacccgcg gcgccgcggt gaacccggat tacgtgcccg
      841 ccacctccgc cgagctacgg ccgggcgaac gtatcgaggt ggacgagcac ggcaaccgcg
      901 taatccgccc gatccgggcc tagctccgct tcagcgccgc ctgcgcggcg gcgagccggg
      961 cgataggcac gcggtagggc gaggccgaca cgtaatcgag gccggcctgt tcgcagaatg
     1021 cgatcgaggc cgggtcgccc ccatgctcgc cgcagatgcc gagcttcagc tcggagcgag
     1081 tcttgcgacc gcgttccgcc gccaatgaaa tcagctcgcc cacgccttcc acatcgaggc
     1141 tgacgaacgg atcgcgcggg aaaatgccct tatcgacata ggcggtgagg aaccgcccgg
     1201 catcgtcgcg ggacacgccg agcgtggtct gggtcaggtc attggtgccg aagctaaaga
     1261 acgcgccgac ttcggcgatt tcgcccgcct tcagcgcggc gcggggcagc tcgatcatcg
     1321 tgccgaccag atattcgatc cggcggcctt tctccgcaaa cacagcttcg gccgtgcggt
     1381 cgatcagctc cttcatcagc tcgagctcgc ggcgcgtggc gaccagcggc accatgactt
     1441 cggggatcgg cgcagcgccg gtcttctccg ccacctcgac cgcggcctcg aaaatcgcgc
     1501 gggcctgcat ctcgtagatt tcggggtagg tgacgccgag ccggcagccg cgatggccga
     1561 gcatggggtt gaactcatgg agctccgccg cgcggcggcg caacgcctcg acgcccacgc
     1621 ccgacgctgc ggcgacttcc acgaattcct cctcctcgtg cggcaggaat tcgtggagcg
     1681 gcgggtcgag caggcggatg gtgacgggga gcccggccat gatctcgaag atctcggcga
     1741 agtcgctgcg ctgctcgggg agcagcttgg cgagcgctgc gcgcctgccc ttctcgtccg
     1801 aggcgaggat catctggcgg acggcggtga tccgggcggc gtcaaagaac atatgctcgg
     1861 tgcggcacag gccgatgcct tcggcgccga aaccgcgcgc ggtgcggcag tctagtggcg
     1921 tttcggcatt ggtgcggacg cgcatccgcc gcaccttgtc tgcccattcc atcagcgtcc
     1981 cgaaatcgcc ggcaagctcc ggctgaacgg tcgggacttc gccggccatc acttcgccgg
     2041 tcgcgccgtc gatcgtgatg atctcgcctt ccttgatcgt gcggtcgccg atgcggaact
     2101 gcttcgcctt ggc
//
LOCUS       DASQVK010000348         3023 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_117197,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000348 DASQVK010000000
VERSION     DASQVK010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3023
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117197"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..164
                     /locus_tag="VE567_07500"
     CDS             <1..164
                     /locus_tag="VE567_07500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016747739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HYZ48722.1"
                     /translation="KAVAFRAADSDLGQALLGAPKDRRLWVAGRPKLDDWSARPAAEL
                     HLDDAAWCD"
     gene            434..508
                     /locus_tag="VE567_07505"
     tRNA            434..508
                     /locus_tag="VE567_07505"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:467..469,aa:Glu,seq:ttc)
     gene            850..1515
                     /locus_tag="VE567_07510"
     CDS             850..1515
                     /locus_tag="VE567_07510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009822353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48723.1"
                     /translation="MLTIAAHLLLLLLLLILAPPLVRWRVPDSPLLTFDVPAGTESAP
                     PRPRKVAKQKSATPPPPKAPVVAQRAPAPIMPDLVPGLEKFDLRQLPRATEEGQTADA
                     SGQGESSAATYGPGEGPGGVRLYNAEWYREPTQAELAAYLPARLQPGWGMIACQTVAR
                     YRVDNCRVLGSEPPGSGLGGAVRQAAWQFLVRPPRIDGKPVIGAWVRIRIEFTPSGEL
                     RHR"
     gene            complement(1855..>3023)
                     /locus_tag="VE567_07515"
     CDS             complement(1855..>3023)
                     /locus_tag="VE567_07515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010164970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HYZ48724.1"
                     /translation="HLGLFDLPFRSLDPAAERARVGAPATRILAREAACRAIVLLRNE
                     GGLLPLSESLGRVALIGPFSTDRANLNGPWSFAGYRQEGVDLASGLRAALHQTTELVI
                     EPGSAIDGPLAGGVARAVAAAQAAEIVVLAVGEGADMSGEANSRVSITLPPAQQALAE
                     AVAATGKPVVVVLRHGRALALQGAVAAAPAILATWFLGCQTGSAIADILTGAVEPTGR
                     LPVSFPFATGQEPWSYDRLPTGRPPPPEPAPQGGTGRWRDAPDDARFAFGHGLGYTSF
                     ALSELTVPASLGSSTSVAVTVRNNGQRAGTHVVQLYIHQRVASRARPVRLLKGFARVT
                     LEAGAATRIALPLSRDDCALVGDTDRWQIEPGIVDVWVAASAADTGLHATTTLM"
BASE COUNT          519 a         1026 c          970 g          508 t
ORIGIN      
        1 tcaaggccgt cgctttccgc gccgctgaca gcgacctcgg ccaggccttg ctcggagcgc
       61 ccaaggatcg ccggctctgg gtcgccggcc ggcccaagct cgacgattgg agcgcccgac
      121 ccgccgcgga actccatctg gacgacgccg cctggtgcga ttgaaacggc cttaagttca
      181 caaacttctt agggtgagcg accaaatctg tgaacttaag cggatatttc cgttaagtcg
      241 caacgcgtta ccgaaacgcc caccagacga gccgtggtgg atttgcgacc tatggtgatg
      301 ctggcgggca aaggatcgac gatgagaatg agccgacacg cagcatcgca cggcacgatg
      361 cgtgtaggac agccaaatat cgcgatccgc ttgacccgcg gctctcaacc gaataacggc
      421 ccccgagcct tccggcccct tcgtctagcg gttaggacgc ggccctttca cggctgaaac
      481 acgggttcga ttcccgtagg ggtcaccacc gttgaaaact ttagtttttt tcagcgaccc
      541 gccgagtggt tccccccgca atcggcacga ttttcccccc gatcacggtc tcggccgcgc
      601 gtttggccat catcagcgcc ctcgcccgct tgccatggtg gcggaccatt tcgctcgaca
      661 tgccaaggat cgaccccacg tggctatcgc taaggccgag ttcgtggtgc gccgacagcc
      721 tatgtcagca catggtgtcc gaacatgagg ttgacgcctg ccgctctcca tcaacagcac
      781 tggcgagagc gcggattttt ctggaggggc atcgatcgat cgttgttgaa acgacgagcg
      841 acagcatttt tgctgaccat cgcggcgcat ctgctgcttc tccttctgct gctgatactt
      901 gcgccgccgt tggtgcggtg gagggtgccc gacagccccc ttctgacttt cgatgttcct
      961 gcagggacgg agagtgcacc gcctcgcccg cgcaaggtcg caaagcagaa gagcgcaact
     1021 ccgccaccac caaaagcacc cgtcgttgcg cagcgagcgc cagctccgat catgccggac
     1081 ctggtcccag gattagagaa gttcgatctt cgccagctgc cacgcgcaac cgaggagggt
     1141 caaacggcag atgcttctgg tcagggcgag agcagcgccg cgacctatgg ccctggcgag
     1201 ggcccgggtg gcgtgcgcct gtacaatgcc gagtggtacc gggagccgac gcaagctgag
     1261 ttggcggcct atttgcctgc acggctgcaa cccggctggg gcatgatcgc gtgccagacg
     1321 gtcgcccgct atcgcgtaga caattgccgc gtgctcggca gcgagccgcc tggctcaggg
     1381 cttggcggag cagtccggca ggcggcgtgg caatttcttg tgcgcccgcc gcggatcgac
     1441 ggaaagccgg tgatcggcgc ttgggttagg atccgcattg agttcacgcc gtcaggcgaa
     1501 ctcaggcatc gatgacgccg caaacttcga tgagtagttc atgttgcggg ccgggatggc
     1561 gtcttccacg cgtgggttgg tttgccaacc gtcggcggct tcgcgccctt agctgccgaa
     1621 cgggccagcc gtcgcaatat cggcttgccg cccaatttcc gccgttcaac gctgacagca
     1681 ttgatctcga aagcggccat tcacgcgcgc cctcggaaaa atcgccgctg tagcttgaaa
     1741 acaggcgcgc gacggcgcgg tatggatgct ggctgacagc cgcaaacgcg gtccagcgta
     1801 gacaccgcgc cggtgactcc cgaaattagg gccgatcgac gcatcattgt cccgtcacat
     1861 caaggtcgtg gtggcatgaa gccccgtatc ggcggcgctg gccgctaccc aaacatcgac
     1921 gatgcccggc tctatctgcc acctatccgt gtcgccgacc aaagcgcaat cgtcgcgcga
     1981 cagcggcagt gcgatccgcg tcgccgcgcc cgcctcgagc gtcacgcgag caaagccctt
     2041 gagcagacgc accggccgcg cgcggctcgc aacgcgctgg tgtatgtaga gctgaacgac
     2101 gtgcgttccc gcccgttgtc cgttgttgcg caccgtgacc gcgacgctgg tcgaactgcc
     2161 cagcgatgct ggtacggtca gctcggacag ggcgaagctg gtgtagccga gcccatgacc
     2221 gaacgcgaac cgcgcgtcat caggagcgtc acgccagcgt cccgtgccgc cctgcggcgc
     2281 cggctcgggc ggcggcggcc ggcccgtcgg cagccgatcg taggaccagg gctcctgtcc
     2341 ggtggcgaag gggaagctga ccggcagccg cccggtcggc tcgactgcgc ccgtaaggat
     2401 gtcggcgatc gccgagccgg tctggcagcc caggaaccag gtcgccagga tcgccggcgc
     2461 tgccgccacc gctccttgca gcgccagagc ccggccgtgg cgaagcacga ccaccaccgg
     2521 cttgcctgtc gccgccaccg cctcggccag cgcctgctgc gctggcggca gcgtgatcga
     2581 aaccctgctg ttcgcctcgc ccgacatgtc ggcgccctcg ccgaccgcga gcacgacgat
     2641 ttctgccgct tgcgccgcgg ccaccgcacg cgccaccccg ccggcgaggg gcccgtcgat
     2701 ggcggagccc ggctcaatca ccagctcggt ggtctggtgc agcgcggcgc gcagcccgga
     2761 cgccaggtcg acgccctctt ggcggtagcc ggcgaagctc cagggtccgt tgaggttggc
     2821 gcgatcggtc gagaatggac cgatcagtgc gacgcggccc aggctctcgc tcagcggcaa
     2881 caacccgcct tcgttgcgca gcagcacgat cgcgcggcaa gccgcctcgc gcgccaggat
     2941 tcgggtcgcg ggcgccccga ccctggcacg ctccgcggct ggatcgagcg accggaacgg
     3001 aagatcgaat agcccgagat gct
//
LOCUS       DASQVK010000349         3148 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_243194,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000349 DASQVK010000000
VERSION     DASQVK010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3148)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3148
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243194"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(342..1580)
                     /locus_tag="VE567_07520"
     CDS             complement(342..1580)
                     /locus_tag="VE567_07520"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HYZ48725.1"
                     /translation="MSESSQFDFTPLLPAGLPAPAARWTGLSKYSFVGGNNDPDGVPV
                     DGLIEAVKVVLRREGKALATYNLAHGPQGYRPLREFLSQKLKRDAGIDCSADDILIVS
                     GSLQALDLVNHTLLARGDTVLIEQESYQGALNRLTRLGVNAVGIPLDSEGMRMDALAA
                     ALADHRRRGITPKYIYTIPTVQNPTGSILPEARRAEMLKLSQQYGVPIFEDDCYADLV
                     WSGERPKAIYAMSSHGGVIHIGSFSKSIAPALRVGFIAAPWQMMSRILALKTDAGSGA
                     LEQMVLAEFCAPHFATHVPRLTRGLRAKLDTLMEALNEQFGTAAEFEAPKGGIFLWVK
                     LPDHVDTLKLYQAALAAGVSINPGPEWSTNKPHSTSRLRLCFASPSHQQIRDGVAVLA
                     EVCRKEFGVPTRSANVEKQA"
     gene            complement(1635..2135)
                     /locus_tag="VE567_07525"
     CDS             complement(1635..2135)
                     /locus_tag="VE567_07525"
                     /inference="COORDINATES: protein motif:HMM:NF022766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3124 domain-containing protein"
                     /protein_id="HYZ48726.1"
                     /translation="MAVSVAIHTGPVQADTAGIEQAFANSLTAVPTQNLVISGSFYVP
                     VYSSVSMSQGKLRADFSVTLSVHNASETRPLVLTRIAYYDTAGKLVESYLKSPIALRP
                     FATIEVFIATADVRGGTGANFVVDWAATGEIAEPAVEALMVGSVGPGHYAFISQGRPT
                     RLVGTN"
     gene            2233..>3148
                     /locus_tag="VE567_07530"
     CDS             2233..>3148
                     /locus_tag="VE567_07530"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HYZ48727.1"
                     /translation="MHELIGDITLCILFAWLLGLLAHFSRQPLILAYLIAGFFIGPFG
                     TGWVKSQESISIISELGLIFMLFMIGLEIDLKKIVRAGKVILFAAGGQLVGGCLLGIL
                     FFVGIGLSIGGGKFDALYLCVACALSSTVIIVKVLYEKRELDTLPGRITLGVLVLQDI
                     FAILFLAVQPSLDNLQLGVILLSIARVGALVATALVLSRYVLPRLFHQIARRPELILL
                     GALAWCFLIGEVAERLHLSREMGSLVAGVSLSTFPYALDVTAKVTTLRDFFITLFFVA
                     LGMTIPVPGLSVIGLALLIAAFTVASRLV"
BASE COUNT          511 a          975 c         1015 g          647 t
ORIGIN      
        1 cagccattgt gccagccacg atcgcgatgc tcgcggaatt cggcgcgcgc gccgtagccg
       61 tgatgatagc cgtgattgta gccgcgcttt accacgaccg tctccgcact cgcaatcgac
      121 ggtgccgcaa tggcaatggc gccgagcgct gcaaagacaa gtccaagctt cttcatgttg
      181 tcctcctcgc acataagcga ggatttaaac atcgcttgcc gcggaacgtt ccgccggaac
      241 ttgaggagaa tcctgaacag ctgttcagca agtcttcgcg cgcaatcagc gcgcctcgtc
      301 ggtcgaactc gtcaatttct cgcgatgaga tgccggatgt atcaggcctg cttctccaca
      361 ttggcgctgc gcgttggaac gccgaactcc ttgcggcaga cttcggcgag cacggcgaca
      421 ccgtcgcgga tctgctggtg cgaggggctg gcgaaacaga gtcgcagccg gctcgtcgaa
      481 tgcggcttgt tggtcgacca ttccggcccc ggattgatcg aaacgccggc ggcgagcgcg
      541 gcctggtaga gtttcagcgt atcgacgtga tcaggcaatt tgacccacag gaagatcccg
      601 cccttcggcg cctcgaattc ggcggcggtg ccgaactgct cgttcagcgc ttccatcagc
      661 gtatcgagct tggcgcgcaa gccgcgcgtc agccggggca cgtgggtagc aaaatgcggc
      721 gcgcagaatt cggcgagcac catctgctcc agcgcgccgg agccggcatc ggtcttcagc
      781 gccagtatcc gcgacatcat ctgccagggt gcggcgatga agccgacccg cagcgccggc
      841 gcgatcgatt tcgagaacga gccgatatgg atgacaccgc catggctgct catcgcgtag
      901 atcgcctttg ggcgctcgcc gctccagacc agatcggcgt agcaatcgtc ctcgaagatc
      961 ggcacgccgt attgctgcga cagcttcagc atctcggcgc ggcgcgcctc ggggaggatc
     1021 gagccggtcg gattctgcac cgtcgggatg gtgtagatgt atttcggcgt gatgccgcgc
     1081 cgcctgtggt cggccagcgc ggccgccagc gcatccatcc gcatgccctc ggaatccagg
     1141 gggatgccga ccgcgttgac gccgagccgc gtcaggcggt tcagtgcgcc ctgatagctt
     1201 tcctgttcga tcagcacggt atcgccgcgc gccagcagcg tgtggttgac gaggtcgagc
     1261 gcctgcagcg agccggacac gatcaggatg tcgtcggcgc tgcagtcgat gccggcgtcg
     1321 cgcttgagtt tctggctgag gaattcgcgc aagggacgat agccctgcgg accgtgggcg
     1381 aggttatagg tcgcgagcgc cttgccctcg cgcctgagca cgaccttgac cgcctcgatc
     1441 aggccgtcga cgggaacgcc gtccggatcg ttgttgccgc cgacaaagct gtatttcgaa
     1501 agccctgtcc accttgccgc cggcgccggc aatccggccg gcagcagagg ggtgaaatcg
     1561 aattgggacg attcggacat ggatgttcac tcccattttt tttgcgagag ccggtcagcc
     1621 ggcttccgtg gaggttagtt cgtgccgaca agcctggtcg gccggccctg gctgatgaag
     1681 gcataatgcc cggggccgac gctgccgacc atcagcgctt cgaccgcggg ttcggcgatc
     1741 tcgccggttg cggcccaatc gaccacgaaa ttggcgccgg tgccgccgcg cacgtcggcg
     1801 gtggcgatga agacctcgat ggtagcgaat ggtctcagcg cgattggcga tttcaggtag
     1861 ctttccacca gcttgcccgc ggtgtcgtag taggcgattc gcgtcagcac cagcggcctg
     1921 gtttccgagg cgttgtggac gctgagcgtg accgagaaat ccgcccgcag cttgccctgg
     1981 ctcatcgaga cgctggagta gaccggcaca tagaatgagc cggatatcac cagattttgc
     2041 gtgggtaccg ccgtcagcga attggcgaag gcctgctcga tgccggcggt gtcggcctgg
     2101 acggggcccg tgtgtattgc gacagagacc gccaatatgg caagccagaa gccgggactg
     2161 cggatgtgac acattgctcg tttgatcccg gtgaccgggc tcttaggttg cggcgaggag
     2221 aatccggaac acatgcatga acttattggc gatatcactc tatgtatcct gtttgcctgg
     2281 cttcttggtc tactcgcgca tttttcccgg cagccgctca tcctggccta ccttatcgcc
     2341 ggcttcttca ttggtccatt cggcaccggc tgggtcaagt cccaggaatc gatcagcatc
     2401 atctccgagc tcggcctgat cttcatgctg ttcatgatcg gcctggagat cgacctgaag
     2461 aagatcgtgc gcgccggcaa ggtgatcctg ttcgccgccg gcgggcaact cgtgggtggc
     2521 tgcctgctcg gcatcctgtt cttcgtaggt atcgggctgt cgatcggcgg cggcaagttc
     2581 gatgcgctct atctctgcgt cgcctgcgcg ctgtcgagca cggtgatcat cgtcaaggtg
     2641 ctgtacgaga aacgcgagct cgatacgctg cccggccgca tcacgctcgg cgtgctggtg
     2701 ttgcaggaca tctttgcgat ccttttcctc gcggtgcagc cgagcctgga caatctccag
     2761 ctcggcgtga tcctgctgtc gatcgcccgg gtcggcgcgc tggtggcgac ggcgctcgtg
     2821 ctcagccgct acgtgctgcc gcggctgttc caccagatcg cgcgccgtcc ggaattgatc
     2881 ctgctcgggg cgctggcctg gtgtttcctg atcggcgagg tcgcggaacg gctgcatctg
     2941 tcgcgcgaga tgggctcgct ggtcgccggt gtgtcgctgt cgacctttcc ctatgcgctc
     3001 gacgtcaccg ccaaggtcac gaccctgcgg gacttcttca tcacgctctt tttcgtcgcg
     3061 ctgggcatga cgatcccggt tcccggcctg tcggtgatcg ggctcgcgct gctgattgcg
     3121 gccttcacgg tggcaagtcg gctggtaa
//
LOCUS       DASQVK010000350         4776 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_440891,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000350 DASQVK010000000
VERSION     DASQVK010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4776
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_440891"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1234)
                     /locus_tag="VE567_07535"
     CDS             complement(<1..1234)
                     /locus_tag="VE567_07535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HYZ48728.1"
                     /translation="MATQAVSAQAGRASKRIRKVFGNIHEVVQMPNLIEVQRESYEQF
                     LRSDPSIGYVSGLEKTLRSVFPIRDFAGTAELDFVHYELEPPKYDTEECRQRGITFAA
                     PMRVTLRLIVFEVDPDTDSRSVLDIKEQDVYMGDMPLMTENGTFVINGTERVIVSQMH
                     RSPGVLFDHDRGKTHASGKYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTS
                     LLYALGLNGEQILHYFYNTVTWVRGEGGWKVPFVVENWRGQKPAFDVVNAETGEVVFP
                     AGQKVTPRAANKAAKDGLGTLLIPTEEIYGRYSALDLINEATGEIYIEAGDEVSAENL
                     EKLDKSGLDRVELLDIDHVNTGPWIRNTLKADKAEDRDQALSDIYRVMRPGEPPTRET
                     AEALFAGLFFDPERYDLSA"
     gene            complement(1472..2773)
                     /gene="hslU"
                     /locus_tag="VE567_07540"
     CDS             complement(1472..2773)
                     /gene="hslU"
                     /locus_tag="VE567_07540"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007685854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HYZ48729.1"
                     /translation="MNDNLTPKAIVAALDEHIIGQTEAKRAVAVALRNRWRRQKLSPD
                     LRDEVTPKNILMIGPTGCGKTEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIAR
                     DLVEEAVRLEKERRRAAVKDKAESAAMDRLLDALTGKGSSEATRAAFRERFQEGVLDD
                     KEVEVELAAQPQMPFELPGMNGQVGMINLSDLMSKAMGGGQLKKRKLNVRTAWEKLLE
                     EEADRRLDQDEVSRQALTDAEANGIVFLDEIDKIAVSDVRGGSVSREGVQRDLLPLIE
                     GTTVATKYGPMKTDHILFIASGAFHVAKPSDLLPELQGRLPIRVELKALTEEDFVRIL
                     TDTKASLPQQYKALIGTEGVEIDFTDDGIAAVARIAAEVNGQIENIGARRLQTVMEKL
                     LEQVSFDAEDRQGDTLVIDRAYVEAQLSEIARDTDLSKYVL"
     gene            complement(2794..3357)
                     /gene="hslV"
                     /locus_tag="VE567_07545"
     CDS             complement(2794..3357)
                     /gene="hslV"
                     /locus_tag="VE567_07545"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010218484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004298 - threonine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0051603 - proteolysis involved in protein
                     catabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HYZ48730.1"
                     /translation="MSGNEHGLPQWHGTTILSVRKNGKVVIVGDGQVSMGQTVMKPNA
                     RKVRRLGDGSVIGGFAGATADAFTLFERLERKLEQHHGQLLRAAVELAKDWRTDKYLR
                     NLEALMIVADKDVSLILTGNGDVLEPAGGIAAIGSGGNYALAAARALAEYEPDAETLA
                     RKAMAVAADICVYTNDQLTIESMASNG"
     gene            3415..4770
                     /locus_tag="VE567_07550"
     CDS             3415..4770
                     /locus_tag="VE567_07550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005337 - nucleoside transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:1901642 - nucleoside transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HYZ48731.1"
                     /translation="MAHALCHRQPACGEPFLNRYLIGIAGIAMILGLAVLLSTNRRAI
                     RLRVVGPAFALQAGFALLVLGTRWGQSAIGAMSRGVSNLLGYAKAGTDFIFGPLASPA
                     LGANSFAIAALPVIIFFASLISILYYLGVMQFVVRWVGGAIRVVTGITRVESLGAAAN
                     IFVGQSESPLVVRPYLASLTPSQLFCLMTVGMAGVAGTILGAYASMIGAQLLPYLLAA
                     SFMSAPGGVLMAKIIMPDEVATPEPDDVVLPEARISAEGPAALLPEGVPHPVPAPDPH
                     DEERPANIIMAAAQGAQTGVKLAVAVGAMVLAFVALVALANGLLAGIGAWFGYPELSF
                     QMLLGFVFRPIMFMLNVPWDEAGVAGGLFGTKMVLNEFVAFIELGKVQKTLSPQTVAV
                     VTFALCGFANFSSIAIQMAVTGNLAPSQRPVIAKLGIRALIAGSLANLMSAALAGLLV
                     G"
BASE COUNT          744 a         1528 c         1566 g          938 t
ORIGIN      
        1 ccgccgacag gtcatagcgc tccggatcaa agaacagccc ggcgaacagc gcttccgccg
       61 tctcgcgcgt cggcggctcg ccggggcgca tgacgcgata gatgtcggag agcgcctggt
      121 cgcggtcctc ggccttgtcg gctttcagcg tgttgcggat ccaggggccg gtgttgacat
      181 ggtcgatgtc aagcagctcg acgcggtcga ggccggactt gtccagcttt tccagatttt
      241 cggcggagac ttcgtcgccc gcctcgatat agatttcgcc ggttgcctca ttgatcaggt
      301 cgagcgccga gtaccggcca tagatttcct cggtcgggat cagcagcgtg ccgagcccgt
      361 ccttcgccgc cttgttggcg gcgcgaggcg tgactttctg gcctgccggg aagacgacct
      421 cgccggtctc cgcattgacg acgtcgaacg ctggtttctg cccgcgccaa ttctcgacca
      481 cgaacggcac tttccagccg ccctcgccgc gcacccaggt cacggtgttg tagaaataat
      541 gcaggatctg ctcgccgttg aggccgagcg cgtacagcag cgaggtgacc ggcagcttgc
      601 gcttgcgatc gatgcggacg ttgacgatgt ccttggcgtc gaactcgaaa tcgagccagg
      661 acccgcgata ggggatcacg cgggcggcga agagatattt gcccgaagcg tgggtcttgc
      721 cgcgatcatg atcgaacagc acacccggcg agcggtgcat ctgcgagacg atgacgcgct
      781 cggtgccgtt gatgacgaaa gtgccgttct ccgtcatgag cggcatgtcg cccatataga
      841 cgtcctgctc cttgatatcg agcacggagc gggaatccgt atcgggatcg acctcgaaca
      901 cgatcaggcg cagcgtgacg cgcatcggcg cggcgaaggt gatcccgcgc tggcggcatt
      961 cctcggtatc gtatttgggc ggctccagct cgtaatgcac gaagtcgagc tcggccgtgc
     1021 cggcgaagtc gcgaatcggg aaaacgctgc gcagcgtctt ttccaggccc gatacatagc
     1081 cgatcgaggg atcggagcgg aggaactgtt cgtagctttc gcgctggacc tcgatcaggt
     1141 tcggcatctg caccacttcg tggatgttgc cgaagacctt gcgaatgcgc ttggacgcgc
     1201 ggccagcctg agccgaaact gcctgagtcg ccatgggggt ttagtgcctc gccgttgaaa
     1261 tccggacgcg aacaagacgc aaaaagccgc gtgttctcaa ggtgagaacc gcagcttcac
     1321 gcgtcttggg caaccaccag ccttccattc gtacggcccg ccgcgccatt gcgtgccttg
     1381 tcccgaaaac tgtggtgaag agcgccagat aggagaccga ataggatttg gcaagaggct
     1441 gaatcgccct ccctaacgca cgaacggcgc gtcagagcac gtatttcgac agatcggtat
     1501 cccgtgcgat ctcgctgagc tgtgcctcga cataggcgcg gtcgatgacc agcgtgtcgc
     1561 cctggcggtc ctcggcgtcg aagctgactt gctcgagcag cttttccatg accgtctgca
     1621 gccggcgggc gccgatattc tcgatctgcc cgttcacttc ggcagcgatg cgggcgaccg
     1681 ccgcgatgcc gtcgtcggtg aagtcgatct ccacgccttc ggtgccgatc agcgccttgt
     1741 actgctgagg cagggaggcc ttggtatcgg tgaggatgcg gacgaaatcc tcttcggtga
     1801 gtgccttcag ctcgacgcgg atcggcaggc ggccctggag ctcgggcagc aggtcgctgg
     1861 gcttggccac atggaacgcg cccgaggcga tgaagaggat atggtccgtc ttcatcgggc
     1921 catatttggt cgcgaccgtc gtcccttcga tcagcggcag caggtcgcgc tgcacgcctt
     1981 cgcggctgac cgagccgccg cgcacgtcgc tgaccgcgat tttgtcgatc tcgtcgagaa
     2041 agacgatgcc gttcgcttcg gcgtccgtga gcgcctggcg gctgacttcg tcctggtcga
     2101 ggcgccggtc ggcctcctct tccagcagct tttcccaggc ggtgcggacg ttgagcttgc
     2161 gcttcttgag ctggccgccg cccatcgcct tcgacatgag gtcggacagg ttgatcatgc
     2221 cgacctgccc gttcatgccc ggcagctcga atggcatttg cggctgcgcg gccagctcga
     2281 cctcgacttc cttgtcgtcg agcacccctt cctggaagcg ctcgcggaac gcggcgcggg
     2341 tcgcctcgct cgaccccttg ccggtgagcg cgtcgagcag ccggtccatc gctgctgatt
     2401 ccgccttgtc cttgaccgcg gcgcgacggc gctctttctc cagccgcacg gcttcctcga
     2461 cgaggtcgcg cgcgatctgc tccacgtcgc ggccgacata gccgacttcg gtgaacttcg
     2521 tcgcctcgac cttcacgaac ggcgcatcgg cgagcttcgc caggcgccgg ctgatctccg
     2581 tcttgccgca gcccgtgggg ccgatcatca ggatgttctt gggcgtgact tcgtcgcgaa
     2641 gatccggcga cagcttctgc cggcgccagc gattgcggag cgcaaccgcg accgcgcgct
     2701 tcgcctcggt ctggccgata atgtgctcgt cgagcgcggc gacgatcgcc ttgggtgtaa
     2761 gattgtcgtt catgttgtcc gaatggaaaa gggtcagccg ttcgaggcca ttgactcgat
     2821 cgtgagctga tcgttggtgt aaacgcagat atcggcggca accgccatcg ccttgcgcgc
     2881 gagcgtctca gcgtccggct catactcggc cagcgcacgg gcagcggcga gggcataatt
     2941 gccgccggag ccgatcgccg cgatcccgcc agccggctcc agcacgtcgc cattgccggt
     3001 caggatcagc gacacgtcct tgtcggcgac gatcatcagc gcctcgagat tgcgcagata
     3061 tttgtcagtc cgccagtcct tggccagctc gacggcagcg cgaaggagct gcccgtgatg
     3121 ctgttccagc ttgcgttcca gccgctcgaa caaagtgaag gcgtccgccg tggccccggc
     3181 aaagccgccg atcaccgaac cgtctcccaa gcgccgcacc ttgcgggcgt tgggcttcat
     3241 gacggtctgc cccatcgaga cttggccgtc gccgacgatg accaccttgc cgttcttgcg
     3301 gaccgagaga atggtggtgc catgccactg gggcagtccg tgttcgttcc cgctcatggc
     3361 cggcgatatg ggagggccgt tgcgccgctg caacatccgc aatttccgct agcgatggcg
     3421 cacgcgctgt gtcaccgcca gccggcgtgt ggggagccat tcttgaatag atatctgatt
     3481 gggatcgccg gaattgcgat gattctgggc ctggcggtgc tgctatcgac caaccgccgc
     3541 gcgatccgcc tgcgcgtggt cgggcccgct ttcgcgctgc aagcggggtt tgcgctgctg
     3601 gtgctgggca cgcgctgggg gcaaagcgca atcggcgcga tgagccgggg cgtctccaac
     3661 ctgctcggct atgcgaaagc aggcacggac ttcatcttcg ggccgctggc atcgccggcc
     3721 ctgggcgcga acagcttcgc gatcgcggcc ctgcccgtca tcatcttctt cgcctcgctg
     3781 atttcgatcc tctactatct gggcgtgatg cagttcgtag tccgctgggt tggcggcgcg
     3841 atccgggtgg tgaccggcat cacgcgcgtc gagagcctgg gcgcggccgc caacatcttt
     3901 gtcggccagt cggaaagccc gctggtcgtg cggccctatc tcgcgagcct caccccgtcg
     3961 cagctcttct gtcttatgac agtgggtatg gcgggcgtgg cggggacgat ccttggcgcc
     4021 tatgcctcga tgatcggtgc ccagctcttg ccgtacctgc tcgcggcgag cttcatgtcc
     4081 gcgccgggcg gcgtgctgat ggcgaagatc atcatgcccg acgaggtcgc cacgcccgag
     4141 ccggacgacg tcgtgttgcc agaggcgcgg atcagcgcgg aaggccccgc ggccttgcta
     4201 cccgaaggcg tgccgcatcc ggtgccggcg cccgacccgc acgacgagga acggccggcg
     4261 aacatcatca tggccgccgc gcagggcgcc cagaccggcg tcaagctggc cgtcgcagtc
     4321 ggggcgatgg tgctggcgtt cgtcgcgctg gtcgcgctgg cgaatgggct gctcgccggc
     4381 atcggcgcct ggttcggcta tccggagctt tcgttccaga tgctgctcgg ttttgttttc
     4441 cgcccgatca tgttcatgct gaacgtgcca tgggacgaag ccggggtcgc gggcgggctg
     4501 ttcgggacca agatggtgct gaacgagttc gtcgcgttca tagagctcgg caaggttcag
     4561 aagacgctgt cgccgcaaac ggtggcggtg gtgacgttcg cgctttgcgg ctttgccaat
     4621 ttcagttcaa tcgcgatcca gatggcggtg accggcaacc tcgcccccag ccagcgcccg
     4681 gtcatcgcca agctcggcat tcgcgcgctg atcgccggca gcctcgccaa tctgatgagc
     4741 gctgcgctgg cgggcctgct ggtgggttag acgagc
//
LOCUS       DASQVK010000351         2737 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_441409,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000351 DASQVK010000000
VERSION     DASQVK010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2737
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_441409"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..479)
                     /locus_tag="VE567_07555"
     CDS             complement(<1..479)
                     /locus_tag="VE567_07555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48732.1"
                     /translation="MGRRGLALILALFAAPASAAELRVCADPNNMPFSNARREGFENK
                     LVERIAADWNMTVRYTWWAQRRGNVRNTLKAGACDLIPGIGSGVDMVAVTRPYYRARY
                     MFVTRADRGLHLSSFDDPRLKTLRIGVQMIGDDGANTPPAHALARRGIVENVRGYLI"
     gene            complement(455..1366)
                     /locus_tag="VE567_07560"
     CDS             complement(455..1366)
                     /locus_tag="VE567_07560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent catabolism-associated
                     beta-propeller protein"
                     /protein_id="HYZ48733.1"
                     /translation="MLAALLLMAETIYVSNEASNVVHMLDASGTRRAEIPVGNRPRGL
                     ALSPDGKRLYVAVSNDNQVVAIDTASGKIAARLKSGPDPEIVSITPDGATLFVSNEED
                     ALVSFIDVASGKVAHEVPVGIEPEGVAVSPDGRTIVATSETSNMAHVIDRASATLTQN
                     LPVDARPRFAAFTSDGKRLWVSSELGGTVSVFEAGGWTPIAKIDFTAIPSAQPVGIAF
                     SRDGARAYVALGRGDSVAEVDAKSLKILRRFPVGTRVWSVALSSDGAHLYAANGLSGD
                     LSIVDLATGTTRSVKLGGKPWGVAVSR"
     gene            complement(1367..1768)
                     /locus_tag="VE567_07565"
     CDS             complement(1367..1768)
                     /locus_tag="VE567_07565"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HYZ48734.1"
                     /translation="MRSASVLGWAVGLAVVLTAGAYGYNYVDAQRQAAVRAHLLTGGD
                     PVRGWKLVQSYGCGGCHTIPRVPQAAGQVGPPLTGVGARVYLAGRLENRPENLVAWIQ
                     HPRAVDPQTVMPELGVTEAQARDIAAYLYTI"
     gene            complement(1755..2594)
                     /locus_tag="VE567_07570"
     CDS             complement(1755..2594)
                     /locus_tag="VE567_07570"
                     /inference="COORDINATES: protein motif:HMM:NF021214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HYZ48735.1"
                     /translation="MIALAMLHAGAHRLPEAAPGWTLTPSVTMPLLLSAVLYATGYAR
                     LQRRAEGGRAQHRRHALRFAAGWVVLALAIVSPLHEGGEHSFTLHMIEHELIMVPAAL
                     LIAVSGPLGVMLWAFPASFRHGLKGSARWWQRLADPVVATGLQALALILWHAPPLFDR
                     ALAHEGWHIAQHLSFLVTALLFWWAMARVAERGALVAASCLFVTSLIGGGLGALMAFS
                     TSPWYAGYAAMGMMPFGLTPAEDQQLAGLVMWIPGGMAHAAAALVLLARLFRPRRQAD
                     ALG"
BASE COUNT          468 a          926 c          956 g          387 t
ORIGIN      
        1 tagatcagat agccgcggac attctccacg atgccgcggc gcgcaagggc atgagcgggt
       61 ggcgtattcg ccccgtcatc gccgatcatc tgcacgccga tgcgcagtgt cttcaggcgc
      121 gggtcgtcga agctggacag atggagcccg cgatcggcgc gcgtcacgaa catgtagcgg
      181 gcgcgataat agggccgcgt gacggcgacc atgtcgacgc cgctgccgat gccggggatc
      241 aggtcgcacg cgccggcctt cagcgtattg cggacattgc cccggcgctg cgcccaccag
      301 gtgtagcgca cggtcatatt ccaatcggca gcaatccgct cgaccagctt gttttcgaag
      361 ccttcgcgcc gggcgttgga aaagggcatg ttgttggggt ctgcacagac gcgcagctcg
      421 gcagcgcttg ccggcgcggc gaaaagcgcc aggatcagcg cgagaccgcg acgccccacg
      481 gcttccctcc cagcttgacc gaacgcgttg tgcccgtcgc gagatcgacg atgctcaggt
      541 cgccgctgag cccgttggcg gcgtatagat gcgcgccgtc gctcgacagg gcgacgctcc
      601 acacgcgcgt gccgaccgga aaacggcgca ggattttcag gctctttgca tccacttccg
      661 ctacggagtc gccgcgcccg agcgcgacat aggcccgcgc gccgtcacgg ctgaaggcga
      721 tcccgaccgg ctgggcggag gggatggcgg tgaagtcgat tttggctatg ggcgtccagc
      781 cgccagcctc gaacaccgac accgtgccgc cgagttcgga ggagacccag agccgcttgc
      841 cgtcggacgt gaaggcggca aagcgcgggc gtgcatcgac gggcagattt tgtgtgagcg
      901 tggccgaagc gcggtcgatc acatgcgcca tgttgctcgt ctccgatgtc gcaacgatcg
      961 tgcgcccgtc ggggctgacg gccacgccct caggctcgat gccgaccggc acctcgtgcg
     1021 cgaccttccc gctcgccacg tcgatgaagg agacgagcgc gtcttcctcg ttggagacga
     1081 acaaggtggc gccgtcgggc gtgatcgaca cgatttccgg atcggggccg gacttcagcc
     1141 gggccgcgat tttgccggag gcggtgtcga tggcgacgac ctgattgtcg ttgctgaccg
     1201 cgacatagag ccgcttgccg tcaggcgaga gggcgagccc gcgcgggcgg ttgccgaccg
     1261 gaatctcggc ccggcgcgta ccgctggcgt caagcatgtg gacgacgttg gacgcctcgt
     1321 tcgagacgta gatcgtctcg gccatgagga ggagcgctgc gagcatctag atcgtgtaca
     1381 gataggccgc gatgtcgcgg gcctgagcct cggtgacgcc gagttcgggc attacggtct
     1441 gcgggtcgac ggcgcgcggg tgctgaatcc aggcgaccag gttctcgggc cggttttcga
     1501 gccggccggc aagatagacg cgcgcgccga cgccggtcag cggcggcccg acctggcccg
     1561 ccgcttgcgg cacgcgcggg atcgtgtggc agccgccgca gccataactc tggacaagct
     1621 tccagccgcg caccgggtcg cccccggtga gaagatgcgc gcgaaccgct gcctggcgct
     1681 gcgcgtcgac atagttgtag ccataggcgc ccgccgtcag cacgacggca aggccaactg
     1741 cccagccaag gacgctagcc gagcgcatcg gcctgcctcc gcggacggaa cagccgggcg
     1801 agcagcacca aagccgccgc ggcatgcgcc atgccgcccg gtatccacat gacgagcccg
     1861 gcgagttgct ggtcctcggc gggcgtcagg ccgaagggca tcatgcccat ggccgcatag
     1921 ccggcgtacc aagggctggt cgagaaggcc atcagcgcgc cgaggccgcc gccgatcagc
     1981 gacgtcacga acaggcagct ggccgcgacc agcgcgccgc gttcggccac gcgcgccatc
     2041 gcccaccaga agagcagcgc ggtcacgagg aaggagaggt gctgggcgat atgccagcct
     2101 tcatgcgcca gcgcccggtc gaacagtggc ggcgcatgcc acaggatcag cgccaatgcc
     2161 tgcaggcccg tcgcgaccac cgggtccgcg agccgctgcc accagcgcgc gctgcctttc
     2221 aagccgtgtc ggaaggaggc ggggaatgcc cagagcatca cgcccagcgg ccccgagacg
     2281 gcgatgagca gggccgccgg caccatgatc agctcgtgct cgatcatgtg cagggtgaag
     2341 ctatgctcgc cgccttcgtg cagcggcgag acgatcgcga gcgcgaggac gacccagccc
     2401 gcggcgaagc gcaacgcatg gcggcggtgt tgcgcacggc cgccctcggc ccggcgctgc
     2461 agccgagcat agccggtcgc gtaaagcacg gcggacagca gcagcggcat ggtcacgctc
     2521 ggcgtcagcg tccacccggg cgcggcctcg ggcagccggt gtgccccggc gtgcagcatt
     2581 gcgagcgcga tcatccgaag caccgcggca ggaggaacgt cgccgaggtc tgcatgatca
     2641 aggcaaccgc gaacagcgcg gccatcaatg caccgacaaa ggcgacgaac ttgcgcccac
     2701 cttcctcccg cccgattgcg cgccagctca ccaggcc
//
LOCUS       DASQVK010000352         3793 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_180156,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000352 DASQVK010000000
VERSION     DASQVK010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3793)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3793)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3793
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180156"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1054
                     /locus_tag="VE567_07575"
     CDS             <1..1054
                     /locus_tag="VE567_07575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYZ48736.1"
                     /translation="QRRSWLFVIQALLVAALWQLGSSDPAHHLGSFAFWAIATAFLSA
                     TQDIVIDAYRIEILSDRQLAFGTAMNQFGYRTGNLLAGAGTIALFSPEGFGFGWPLAY
                     GLTSLLVIPAALTALWIGPGRFRAIDTGHRPADWFRSTVVAPFAEFLRRPGAWLILLF
                     VLTYKLGDAMGQLMLNPMIVDQGYSDTDYVAISKLVGFWALIVGSGLGAPMIARFGIA
                     RSLFISGIIMMIANLCFAGVALSGHSRAALGFAVGLENLFAGIGLTVFATYLSGLSNL
                     AFTATQYALLSSVAAVGRTFISAPSGYVQSATGWPGFYVFAACMGIPGLLCLWAMLKR
                     GFIVERPRQPEAEERS"
     gene            1122..2024
                     /locus_tag="VE567_07580"
     CDS             1122..2024
                     /locus_tag="VE567_07580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing redox enzyme family protein"
                     /protein_id="HYZ48737.1"
                     /translation="MATKLRAANTPQFLNNAFQRTLAKWNRERLAPAFPDIDWRRDFD
                     RNMQMLRLEGAFLDELRAEVAGDLDAVPDEPTAFVDWFTALKDKGPGQNHPLFAWLAE
                     TATEGQMRWFLTQEAAGEAGFDDLVAYTQVKLPLGPKLELAGNYWDEMGRGQYRGIHT
                     LLLRELVAKMRIKPEIDTTVWESLALANAMTAMATTRRYAWLSVGALGVVELTAPWRC
                     EHVSAGLKRLGFGQRERLYYDLHGKIDVKHSETWNENALKPLVEEDPRRARFIAEGAL
                     IRMRCAARCFDRYSEFLEDGAEIY"
     gene            complement(2018..3280)
                     /locus_tag="VE567_07585"
     CDS             complement(2018..3280)
                     /locus_tag="VE567_07585"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010217133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004326 - tetrahydrofolylpolyglutamate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008841 - dihydrofolate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="folylpolyglutamate synthase/dihydrofolate
                     synthase family protein"
                     /protein_id="HYZ48738.1"
                     /translation="MDFATSSDPAVQRQLDRLTALSPGRDILGLERITALLARLGHPE
                     RRLPPVFHVAGTNGKGSTCAFLRAAIEAAGLSAHVYTSPHLVRFNERIRLAGRLIGDA
                     PLAGLLEEVLDDAEGLGASFFEVTTAAAFLAFSRTPADACVIEVGLGGRLDATNVFER
                     PAACGIAALGIDHQSFLGEGLGEIAAEKAGIARPGVPLTTLAYPPEAEASIEAAVART
                     GTLRLKQGEAWGIEGHIYRDLYGALELPAPALSGTHQLLNAGLALAMLRHQGAIAVPE
                     PALIEGIRAARWPARLQRLAPGPLTAGRELWLDGGHNPSAAQALAEALSGQRLDLVLG
                     MLANKDAEGFLRLLAPVIRSVSAVPIEAHEHHAPEQLAAIAGRLGLPGRACPDLASAL
                     APLPGPVLIAGSLYLAGQVLALNGEAPQ"
     gene            complement(3287..>3793)
                     /locus_tag="VE567_07590"
     CDS             complement(3287..>3793)
                     /locus_tag="VE567_07590"
                     /EC_number="2.1.3.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011240486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HYZ48739.1"
                     /translation="GRRAIVGAQDFAFMGGSMGIAVGAAFVEGVRAAIEAKCPYVIFT
                     AAGGARMQEGILSLMQMPKTTVALAELREAGLPYIVVLTDPTTGGVTASYAMLGDIQI
                     AEPGALIGFAGQRVIEQTIREKLPEGFQRAEYLLDHGMLDMVVHRRELRETLGRVIDY
                     VMPARAAA"
BASE COUNT          588 a         1258 c         1290 g          657 t
ORIGIN      
        1 ccagcgccgg tcctggctgt tcgtgattca ggcgctgctc gtcgcggcgc tgtggcagct
       61 gggctcgagc gatccggctc atcacctcgg aagtttcgcc ttctgggcaa tcgccaccgc
      121 tttcctgtcg gcgacgcagg acatcgtcat cgatgcctat cgcatcgaga tattgagcga
      181 tcgccagctc gctttcggca cggcgatgaa tcaattcggc tatcgcacgg gcaatttgct
      241 cgccggggcc gggacaatcg ccctgttctc gcccgaaggc ttcgggttcg gctggccgct
      301 cgcctacggg ctcacctcgc tgctcgtgat cccggcggcg ctgacggcgc tctggatcgg
      361 ccctggccgc ttccgcgcga tcgacaccgg ccatcgcccg gccgactggt tccgctcgac
      421 ggtcgtcgcg cccttcgccg agttcctgcg ccggcccggc gcctggctga tcctgctgtt
      481 cgtgctgaca tacaagcttg gcgacgcgat ggggcagctg atgctcaatc caatgatcgt
      541 cgaccagggc tattccgata ccgattatgt cgcgatcagc aaattggtcg gtttctgggc
      601 cctgatcgtg ggctcggggc tcggggcgcc gatgatcgcg cgcttcggca tcgcgcgctc
      661 gctgttcatc tccggcatca tcatgatgat tgcgaacctc tgctttgccg gcgtcgcctt
      721 gtccggccac tcgcgggcag cgctcggttt cgcggtaggt ctcgaaaatc tgttcgccgg
      781 catcggcctg acggtgttcg cgacctatct ttccgggctt tcgaaccttg ctttcaccgc
      841 cacgcaatat gcgctgcttt ccagcgtggc tgcggtcggc cgcactttca tctcggctcc
      901 ctccggctat gtgcaaagcg ctaccggctg gccgggcttc tacgtctttg cggcatgcat
      961 gggcattccg ggcttgttgt gcctctgggc catgctgaag cgcggcttca tcgtcgagcg
     1021 tccgcgtcag ccggaggccg aggagcgtag ctgacgggaa cccgactctt tgcccgaccg
     1081 ttctagaggc ataaaacgcc tctccgacgg agtcccctta agtggcaaca aagcttcgtg
     1141 cggccaacac gccgcagttc ctgaataatg ccttccaaag aacgctcgct aaatggaacc
     1201 gggaacggct cgcgccggca ttccccgaca ttgattggcg cagggacttt gatcggaaca
     1261 tgcagatgct ccgtctcgaa ggcgcttttc ttgatgagct ccgcgctgaa gtcgctggcg
     1321 acttggatgc cgtaccagac gagccgacgg cgtttgtcga ctggttcacg gcgctgaagg
     1381 acaaggggcc gggccagaac cacccgctct tcgcctggct ggccgagacg gcgaccgagg
     1441 gccagatgcg ctggttcctg acccaggaag cggctggcga ggccgggttc gacgacctgg
     1501 tcgcctacac ccaggtgaag ctgccgctcg gccccaagct cgaattggcc ggcaattatt
     1561 gggacgaaat gggccgtggc cagtatcgcg gcatccacac attgctgttg cgcgaactgg
     1621 ttgcgaagat gcgcatcaag ccggagatcg acacgacagt gtgggaaagc ctcgcgctcg
     1681 cgaacgcgat gacggcgatg gctacgacgc ggcgctatgc ctggctgtcg gtcggcgcgc
     1741 tcggcgtggt cgagctcacg gcgccatggc ggtgcgagca tgtgtcggcg ggcctgaaac
     1801 gcctgggctt tggccagcgc gagcggctct attacgacct ccatggcaag atcgacgtca
     1861 agcacagcga gacctggaac gagaacgcgc tgaagccgct ggtcgaggaa gacccgcgcc
     1921 gtgctcggtt tattgcggag ggcgcgctga tccggatgcg ctgcgccgcg cgctgcttcg
     1981 accgctattc ggagtttctg gaggacggcg ccgaaatcta ctgaggcgct tcgccgttga
     2041 gcgcgagcac ttggcctgcg aggtaaaggg aaccggcgat cagcacggga ccgggcagcg
     2101 gcgccagggc tgaggcgaga tcggggcaag cgcggccggg gaggccgagc cgcccggcga
     2161 tcgccgcgag ctgctcgggc gcgtgatgct cgtgcgcctc gatggggacg gcgctgaccg
     2221 accggatcac gggcgcgagc agccggagaa agccctcggc gtccttgttg gcgagcatgc
     2281 cgagcaccag gtcgaggcgt tggccggaca gtgcttcggc caaggcctgg gcggccgagg
     2341 gattgtgccc gccgtcgagc cagagctcgc gtcccgccgt cagcggtccc ggcgcgaggc
     2401 gttgcagccg ggccggccag cgcgcggcgc ggatgccctc gatcagcgcc ggttcgggca
     2461 cggcgatcgc gccctggtgc cgcagcatgg cgagcgccag cccggcgttc agcagctggt
     2521 gcgtgcctga cagcgcgggt gcgggcagct ccagcgcgcc atagaggtcg cggtagatat
     2581 ggccttcgat gccccaggcc tcgccttgct tcaggcgaag ggtgccggtg cgcgcgaccg
     2641 cggcttcgat gctcgcttcg gcttcgggtg gataggcgag ggtggtgagc ggcacgcccg
     2701 gccgggcgat gccggctttc tccgccgcga tctcgcccaa cccctcgccc agaaagctct
     2761 ggtggtcgat gccgagcgcc gcgataccgc acgcggcggg ccgctcgaag acattggtgg
     2821 cgtcgagcct ccctcccagc cccacttcga tcacgcaggc atcggccggg gtgcgggaaa
     2881 aagcgaggaa agccgcggca gtcgtcacct cgaagaagct ggcgccgaga ccctcggcat
     2941 cgtccagcac ttcttcgagc aggccggcga gcggcgcgtc cccgatgagc cgccccgcca
     3001 ggcggatccg ctcattgaag cggaccagat gcgggctcgt gtacacatgg gcgctgaggc
     3061 ccgcggcctc gatcgcagcc cgcaggaagg cgcaggtcga gcccttgccg ttcgtgcccg
     3121 caacatgaaa caccggcggc agccgccgct ccggatggcc gagccgggcg agcagagccg
     3181 tgatccgctc cagccccaga atgtcccgcc ccggcgagag cgcggtcagt cggtcgagct
     3241 ggcgctgaac ggcggggtcg gaggatgtag cgaagtccac ttggcgctag gccgccgccc
     3301 tcgccggcat cacataatcg atcacgcggc cgagcgtctc ccgcagctcg cggcgatgca
     3361 cgaccatgtc gagcatgccg tggtcgagca gatattcggc ccgctggaag ccttcgggga
     3421 gcttctcgcg gatcgtctgc tcgatcaccc gctggcctgc aaagccgatc agtgcgcccg
     3481 gctcggcgat ctggatatcg cccagcatcg catagctcgc cgtgacgccg cccgtggtgg
     3541 ggtcggtcag cacgacgata tagggcaggc ccgcctcgcg cagctcggcc agcgcgacgg
     3601 tcgtcttggg catctgcatg agcgagagaa tgccctcctg catccgcgct ccgcccgccg
     3661 cggtgaagat aacgtaggga cacttcgcct cgatcgcggc gcggacgcct tcgacgaagg
     3721 cagcgccgac cgcgatcccc atcgatccgc ccatgaaggc gaagtcctgc gctccgacga
     3781 ttgcgcggcg gcc
//
LOCUS       DASQVK010000353         5000 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_243453,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000353 DASQVK010000000
VERSION     DASQVK010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5000
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243453"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(47..1072)
                     /gene="queA"
                     /locus_tag="VE567_07595"
     CDS             complement(47..1072)
                     /gene="queA"
                     /locus_tag="VE567_07595"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HYZ48740.1"
                     /translation="MKVDLFDFNLPTDRIALRPAEPRDSARLLLLDRNGAADHVVRDL
                     PSLLRPSDCLVLNDTRVIPAQLEGQRGEARIGATLHKREGLRSWRAFIRNAKRLRVGD
                     MIDFGAGVAAVAEARDADGSFVLRFLGDEPVELLLDRAGRMPLPPYIASKRPADERDQ
                     FDYQTMFAREKGAVAAPTAALHFTPALMSALAEAGIGHETLTLHVGAGTFLPVKAEDT
                     TEHKMHDEWGRIDAATAERLNAVRAAGGRIIAVGTTSLRLLESAAGEDGIIRPFEGDT
                     AIFITPGYRFRAVDGLMTNFHLPKSTLFMLVSALMGRERMLAAYEHAIASGYRFYSYG
                     DASLLIP"
     gene            complement(1098..1847)
                     /locus_tag="VE567_07600"
     CDS             complement(1098..1847)
                     /locus_tag="VE567_07600"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010215891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HYZ48741.1"
                     /translation="MRLFAALLALLGALFATAAIAKKAPKIAPAPVTTAVVTPPVTPE
                     NTWVLELSTGGRVLVQLRPDKAPKSVERIKTLTRRGFYNGLTFHRVIDGFMAQGGDPK
                     GTGEGGSDLPDLKAEFNDLPHVRGAVSMARADAEDSANSQFYIMLMPTLRLDGHYTVV
                     GRVISGMQYVDAIEKGEPPANPSRIVRAWIQSDGENAPLVPAPAPAATPAPGATPLPS
                     ATPAPGATPTASPTPASPPKPASGPQPQTAN"
     gene            complement(1919..2419)
                     /gene="coaD"
                     /locus_tag="VE567_07605"
     CDS             complement(1919..2419)
                     /gene="coaD"
                     /locus_tag="VE567_07605"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011950876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HYZ48742.1"
                     /translation="MRVGVYPGTFDPITLGHMDIIRRGAKLVDRLVIGVTTNPSKSPM
                     FTVEERLEIVRREVDGEAGHIDVVPFDSLLMAFAEREGAAVIVRGLRAVADFEYEYQM
                     AGMNQQLNDRIETVFLMADVSLQPIASRLVKEIAMFGGDISRFVTPSVRRDVVARVEK
                     LGRRGS"
     gene            complement(2421..3320)
                     /locus_tag="VE567_07610"
     CDS             complement(2421..3320)
                     /locus_tag="VE567_07610"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004337 - geranyltranstransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="farnesyl diphosphate synthase"
                     /protein_id="HYZ48743.1"
                     /translation="MGGGGSDLKQAMERIASDIDRAFDVLLAIPDDPRRRLYEAMRHA
                     AIGGGKRLRPLLVCASCALFAVKREAALRVAASIECMHVYSLIHDDLPAMDDDDMRRG
                     KPTVHKAFDEATAILAGDALHALAFEVLADPSTHADPFVRAELCLELARAAGPAGMAG
                     GQMMDLAAADTEMDLATITRLQQLKTGALIGFCLEAGAIMGRVPPEGRTHLRGYARNV
                     GLAFQIADDLIDVEGSAEAAGKSVGKDAGAGKATFVSHLGVERAREQARLLVEQAVAH
                     LNGHGPEADLLRAIARYVIDRDR"
     gene            complement(3325..3576)
                     /locus_tag="VE567_07615"
     CDS             complement(3325..3576)
                     /locus_tag="VE567_07615"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011542480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HYZ48744.1"
                     /translation="MADDAQHDITALSFEDALKRLETIVARLESGEASLDESITLYAE
                     GDRLRAQCEARLATAQARIEKITLGQDGRPTGVEPFDAG"
     gene            3694..4350
                     /locus_tag="VE567_07620"
     CDS             3694..4350
                     /locus_tag="VE567_07620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48745.1"
                     /translation="MQVSRTWAGLAGILFVVPLALMSADYSTRAADHLDPPTRTDKDF
                     DPTPDVPADIADVFAWYTPTSIVVALTFAGPQPGNMPPTYDRDVLYTINISNAGARTD
                     PEIQIRFRFGYDGQSPGVQFTGIPGTATALEGPVQTVLQQGEVKAIAGIFDDPFFFDL
                     LGFRETRSTGTLAIRNTRDFFRGQNDTSVVIEMPRSAVLNGTGPLDIWATTARFGGNL
                     "
     gene            4350..>5000
                     /locus_tag="VE567_07625"
     CDS             4350..>5000
                     /locus_tag="VE567_07625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017667716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4331 family protein"
                     /protein_id="HYZ48746.1"
                     /translation="MRAFPLLALAATLPMLSACGGDSTAAPRPGPVGAPAPTPTPTAT
                     STSFDVTPCLNQQVALGVSVTNLIIPDTLKLDVGKPNGFPNGRGLNDPVIDITLAVLF
                     LDLTKHPANLLASLPLDPPGNDVPLPSTFPYLAPANGNPPMPPAGGTNFNFRTDPPSA
                     YTSVDRMGMPAVATALISSAQKNPYNDSTPADDVAGKFTGDIAHTLQGLTNALADDF"
BASE COUNT          857 a         1725 c         1585 g          833 t
ORIGIN      
        1 actaaaatca actaaggtcg atgtgaatat gcgtatcccc gcaatttcac ggtatcagca
       61 gcgacgcgtc gccatagctg taaaagcggt agccgcttgc gatcgcatgc tcgtaggcgg
      121 ccagcatccg ttcgcggccc atcagcgccg agaccagcat gaacagcgtg gacttgggca
      181 ggtgaaagtt ggtcatcagc ccatcgaccg cgcggaaccg ataccccggc gtgatgaaaa
      241 tggcggtatc cccttcgaag ggtcgaatga tgccgtcctc gcccgcagcg ctttcgagca
      301 ggcgcaggct ggtggtgccg accgcgatga tgcggccacc ggccgcgcgg accgcgttca
      361 gccgctcggc ggtagccgcg tcgatgcggc cccattcgtc gtgcatcttg tgctcggtcg
      421 tatcctcggc cttgacgggc aggaacgtgc ccgccccgac atgcagcgtc agcgtctcat
      481 ggccgatgcc ggcctccgcg agtgccgaca tcagcgccgg cgtgaagtgc agcgcggcgg
      541 tgggcgcggc gaccgcgcct ttctcgcgcg cgaacatggt ctggtagtcg aactggtcgc
      601 gctcgtcggc ggggcgcttg ctggcgatat agggcggcag cggcatgcgc cccgcgcggt
      661 cgagcagcag ctcgacgggc tcatccccca gaaagcgcag cacgaagctc ccgtccgcat
      721 cgcgcgcttc ggcgaccgcc gccacccccg cgccgaagtc gatcatgtcc ccgacgcgca
      781 gccttttggc gttgcggatg aaggcgcgcc agctgcgcag cccttcgcgc ttgtgaaggg
      841 tcgcgccgat ccgcgcctcg ccgcgctgcc cttcgagctg cgccgggatc acgcgcgtat
      901 cgttgaggac cagacagtcg ctcggacgga gcaggcttgg caggtcgcga acgacatggt
      961 cggccgcgcc attgcgatcg agcagcagca gcctggcgct gtcgcgcggc tcggcgggcc
     1021 ggagcgcgat gcggtcggtc gggagattga aatcaaaaag atcgactttc acggcacgcc
     1081 gatgcccgaa gccgcgctca gttggcagtc tgtggctggg gacccgaggc cggtttcggc
     1141 ggggaagcag gcgtcgggct cgcagttggc gtggcgccag gagcaggcgt cgcgctcggc
     1201 agaggcgtcg cacccggagc aggcgtggct gccggagctg gcgccggcac cagcggcgca
     1261 ttctcgccgt ccgactggat ccaggcgcga acgatgcgcg atggattggc cggcggctcg
     1321 cccttctcga tcgcatcgac atattgcatg cccgaaatca cccggccgac aacggtataa
     1381 tggccgtcga gccgcagcgt cggcatcagc atgatataaa actggctgtt agccgaatcc
     1441 tcggcatccg cgcgcgccat cgagacggca ccacgcacat gcggcaggtc gttgaactcg
     1501 gccttgaggt cgggcaggtc ggagccgccc tcgccggtgc ccttgggatc gccgccctgc
     1561 gccataaagc cgtcgatcac gcgatggaat gtgaggccgt tatagaagcc ccggcgagtc
     1621 agcgtcttga tccgctcgac ggatttcggc gccttgtcgg ggcgcagctg gaccagcacc
     1681 cggccgccgg tcgaaagctc cagcacccat gtattctcag gggtcacggg cggcgtgacg
     1741 accgcagtgg tcaccggcgc aggtgcgatc ttgggcgcct tcttcgcgat cgccgccgtt
     1801 gcgaacagcg cgccgagcag ggcaagaagg gcggcaaaca ggcgcattca ggaactccgt
     1861 cgactgcggg aaggccaaac cgcttggcag cgcgcggctt agcgggcgct gaatagccct
     1921 aactgccccg gcggccaagc ttctcgacac gcgcaacgac atcgcgccgc acgctgggcg
     1981 tcacgaacct ggaaatgtcg ccgccgaaca tcgcgatttc cttcaccagg cgcgaggcga
     2041 tcggctgcaa cgaaacgtcg gccatcagaa agacggtctc gatccggtcg ttcagctgct
     2101 ggttcatgcc ggccatctga tattcatatt cgaagtccgc gacggcgcgc aggccgcgca
     2161 cgattaccgc ggcgccctcc cgctcggcaa aggccatcag cagcgagtcg aaaggtacga
     2221 catcgatgtg ccctgcctcg ccgtccactt cccggcggac tatttccaac cgctcctcga
     2281 cggtgaacat cggcgatttg gacgggttgg tggtgacgcc gataaccagc cggtcgacca
     2341 gcttcgcccc gcgccgaatg atatccatat ggccgagcgt gatcggatcg aacgtgcccg
     2401 gatagacccc cacgcgcata ttatctgtcc ctgtcgatga cataacgggc aatggcgcgg
     2461 aggaggtccg cctcgggccc gtggccgttc agatgcgcaa ccgcttgttc gacgagcaat
     2521 cgcgcctgtt cgcgcgctcg ctcgacgcca aggtgcgaga cgaacgtcgc cttgccagcc
     2581 ccggcatcct tgccgacgga cttgcccgcc gcctctgcgg agccttcgac atcgatcaga
     2641 tcgtcggcga tctggaaggc gaggccgaca ttgcgcgcat agccgcgcag atgcgtgcgg
     2701 ccttcgggcg gcacccgccc catgatcgcc ccggcttcca ggcaaaagcc gatcagcgcg
     2761 ccggtcttga gctgctgcag gcgcgtgatc gtcgccaggt ccatttccgt atcggcggcg
     2821 gcgaggtcca tcatctgccc gcccgccatg cccgccggtc ccgcagcgcg cgccagctcc
     2881 aggcacagct ccgcgcgaac gaacggatcg gcgtgcgtcg agggatcggc aagcacttcg
     2941 aacgcgagcg cgtggagcgc atcgcccgcc aaaatcgccg tcgcttcgtc gaatgcctta
     3001 tgcaccgtcg gcttgccgcg ccgcatatcg tcgtcgtcca tcgccggcag atcgtcatgg
     3061 atcaacgaat agacgtgcat gcactcgatg gacgcagcga cgcgcagcgc cgcttcacgc
     3121 ttcacggcaa acagtgcgca cgacgcacag acgagcagcg gacgcagcct ttttccgccg
     3181 ccgatcgcgg cgtggcgcat cgcttcgtag agacggcggc gcggatcgtc cggaatcgcg
     3241 agcagcacat cgaaagcgcg atcgatgtcg ctggcgatcc gctccatcgc ctgtttgaga
     3301 tcgctccccc cgccccccat gggcctaccc ggcgtcgaac ggctcgacac cggtcggccg
     3361 gccgtcctgt cccaaagtga ttttctcgat ccgcgcctga gcggtggcca gccgcgcctc
     3421 gcactgggcg cgcagccggt ccccttcggc ataaagcgtg atcgactcat cgagcgacgc
     3481 ttcgccgctt tccagccggg cgacgatcgt ctccagccgt ttcagcgcgt cttcgaaaga
     3541 aagtgcggta atgtcgtgct gcgcgtcgtc ggccatgcat ctgctatgcg agacgggccg
     3601 tagtttggtc aaccgcgacg acactttggt cgcaccgcca ctttactttg cgctgcggaa
     3661 ccagcttcat caggcgcaac aggggagaag actatgcaag tctcacgcac gtgggccggg
     3721 ctggcaggca tactgttcgt ggtgccgctg gcgctgatgt ccgccgatta ttcgacaagg
     3781 gcggccgacc atctggatcc gccgacccgc accgacaagg atttcgaccc cacgcccgac
     3841 gtgccggccg acatcgccga cgtgttcgcc tggtacacgc cgacttcgat cgtcgtggcg
     3901 ctcacctttg cggggccgca gcctggcaac atgccgccca cctatgatcg tgacgtgctc
     3961 tacacgatta acatctcgaa cgctggcgcg cgcaccgatc ccgaaatcca gatccgcttc
     4021 cgcttcggct atgacggcca gtcgccgggc gtgcagttta ccgggattcc gggcaccgcc
     4081 actgcgcttg aagggccagt gcagaccgtg ctgcagcaag gcgaggtgaa ggcgatcgcc
     4141 ggcatcttcg acgatccctt cttcttcgat ctgctcggct ttcgcgaaac tcgctcgacc
     4201 ggcacgctcg cgatccgcaa cacgcgcgat ttcttcaggg gccagaacga cacgtccgtc
     4261 gtaatcgaga tgccgcgctc ggcggtcctg aacgggaccg gtccgctgga catctgggcg
     4321 accacggccc gctttggggg gaatctgtga tgcgcgcctt tccgctcctc gcactcgcgg
     4381 cgacgctgcc catgctgagc gcttgcggcg gcgacagcac ggccgcacca cgccctgggc
     4441 cagtcggcgc cccggcgccc acgccgactc ccaccgccac gagcaccagc ttcgacgtga
     4501 cgccctgcct caaccagcag gtggcactgg gcgtcagcgt cacgaatctg atcattccgg
     4561 acacgctgaa gctggacgtc ggcaagccca acggctttcc caacggccgc gggctaaacg
     4621 atccggtgat cgacatcacg ctggcggtgc tgttcctcga cttgaccaag cacccggcga
     4681 acctgctcgc cagcctgccg ctcgatccgc cgggcaatga cgtgccgctg cccagcacgt
     4741 tcccttatct agcgccggcc aacggcaatc cgcccatgcc gcccgcgggc gggaccaact
     4801 tcaacttcag gaccgacccg ccctcggcct ataccagcgt cgaccgtatg ggcatgccgg
     4861 cggtcgcgac ggcgctcatc tccagcgcgc agaagaatcc gtacaatgat tcgacgcctg
     4921 ccgacgatgt cgccggcaag ttcacgggcg acattgcgca tacgcttcag ggcctcacga
     4981 acgcgctggc ggacgacttc
//
LOCUS       DASQVK010000354         3700 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_465119,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000354 DASQVK010000000
VERSION     DASQVK010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3700
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_465119"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1290)
                     /gene="glmS"
                     /locus_tag="VE567_07630"
     CDS             complement(<1..1290)
                     /gene="glmS"
                     /locus_tag="VE567_07630"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007709913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HYZ48747.1"
                     /translation="MCGIIGILGVDDVAERLVEGLRRLEYRGYDSAGVATVHDGRIER
                     RRAEGKLNNLARKLGEEHLPGKSGIAHTRWATHGAPTEDNAHPHLVGDVVLVHNGIIE
                     NFKPLRDELLAEGREFKSQTDTEVVGHLVAREVERGASPEEAVKAVLPRLHGAFALAI
                     MFRSDPDLIIGARLGAPLVVGYGEDENYLGSDAIALAPLTQRIAYLDEGDWAVVRRGS
                     VQIFDKDNRTVERPITLSGVTGALIDKGNHRHFMQKEIYEQPVVVAQTLSSYLRTLEA
                     RVALPDMEFDLGSVERVAIVACGTASYVGAIGKYWLEQMARVPVEVDVASEFRYREPV
                     LGRNTLGLVISQSGETADTLAALRHMKAEGVTTAGIINVPTSSMAREVDLLLPTHAGP
                     EVGVASTKAFSCQLAVLAALAANLARAKGRLSHEEEQE"
     gene            complement(1306..1671)
                     /locus_tag="VE567_07635"
     CDS             complement(1306..1671)
                     /locus_tag="VE567_07635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017669870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HYZ48748.1"
                     /translation="MSDPIFDTNILIDWLRDRPGASGELSRYRRHRISRVTWTEVLAG
                     EPLETRDNVRGLIAPFEVVEVDSRICLAAADIRYRTRMKLLDAIILATAQVNGAILVT
                     RNTRDFPANMPGIRIPYTL"
     gene            complement(1678..1908)
                     /locus_tag="VE567_07640"
     CDS             complement(1678..1908)
                     /locus_tag="VE567_07640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008995759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix protein, CopG family"
                     /protein_id="HYZ48749.1"
                     /translation="MRTIVDIPEDDIRWLDQRAAETGKSRTALVREAVQAYRHEEPKD
                     WIARGRGYWSDRDDIGDGVEYQRRIREDRDFD"
     gene            complement(1941..3299)
                     /gene="glmU"
                     /locus_tag="VE567_07645"
     CDS             complement(1941..3299)
                     /gene="glmU"
                     /locus_tag="VE567_07645"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003977 - UDP-N-acetylglucosamine
                     diphosphorylase activity [Evidence IEA];
                     GO_function: GO:0019134 - glucosamine-1-phosphate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0006048 - UDP-N-acetylglucosamine
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HYZ48750.1"
                     /translation="MTTERPLAAIVLAAGKGTRMKSDLHKVLHPIAGRPMLMHLLASL
                     DALGPERTVVVVGSGREQLEKALAGQGVEIVVQEPQLGTGHAVQQAEQALGGFKGDVL
                     ILYGDVPFVSSQTMRALVDRLHQADEPAAVVLGFRPADAAAYGRIVADANGRIAKMVE
                     FKDASTEERAVTLCNSGLMAVRASDLFALLPEVKNENAAGEYYLPDIVMLAAAQGRNS
                     AVVETDAAEVAGINSRAELATLELVWQKNRRAQAMIEGATLIAPETVWFSYDTKLGRD
                     VTIEPNVWFGPGVSIEDRVTIHAFSHIEGAHVAPGAEVGPFARLRPGAELGRDSKVGN
                     FVEVKKARLGDGAKANHLTYLGDAEIGAGANIGAGTITCNYDGFFKYRTEIGAGAFIG
                     SNSALVAPVKIGNGAIVGAGSVITSDVDTDALALGRGEQKTKAGWASKFREMMQGRKK
                     AR"
     gene            3347..>3700
                     /locus_tag="VE567_07650"
     CDS             3347..>3700
                     /locus_tag="VE567_07650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017182783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD hydrolase-like protein"
                     /protein_id="HYZ48751.1"
                     /translation="MSRAFDIVGFDLDGTLLDTSVSLARAVNHALIEAGRPPLAVEQV
                     RPMIGGGAKKMLEKGLEASGGYDPEDMKRLYPILLDFYRDNISKDTVPFPGLLDALDK
                     LAAAGVSLTIVTNKFE"
BASE COUNT          623 a         1245 c         1146 g          686 t
ORIGIN      
        1 ttcctgctct tcctcgtggc tcagccggcc cttggcgcgg gctaggttgg cggcgagcgc
       61 ggcaagcact gcgagctggc aggaaaaggc cttggtcgac gcgacaccaa cttcgggccc
      121 ggcgtgggtc ggcagcaaca ggtcgacttc gcgcgccatc gaggaggtcg gcacgttgat
      181 gatgccggcc gtcgtaacgc cttccgcctt catgtgccga agcgccgcca gcgtgtccgc
      241 cgtctcgccc gattgcgaaa tgacgaggcc gagcgtgttc cggccgagca ccggctcgcg
      301 atagcggaac tccgacgcga catcgacttc gaccggcacc cgcgccatct gctcgagcca
      361 atatttcccg atcgcgccaa cgtaagaagc ggtgccgcag gcgacgattg cgacgcgctc
      421 gaccgagccc aggtcgaact ccatgtcggg cagcgcgacg cgcgcctcaa gcgtgcggag
      481 atacgagctc agcgtctgcg cgacgacgac cggctgctcg tagatttcct tctgcatgaa
      541 atggcggtga ttgcccttgt cgatcagcgc cccggtgacg cccgacagcg tgatcggccg
      601 ttcgaccgtc cgattgtcct tgtcgaaaat ctgcacgctg ccgcggcgga cgaccgccca
      661 atcgccctcg tccagatagg ctatgcgctg agtgagcggc gccagcgcga tcgcgtctga
      721 gcccaggtaa ttctcgtcct cgccatagcc gacgaccagc ggcgcaccga gccgcgcgcc
      781 gatgatcagg tcgggatcgc ttcggaacat gatcgccagc gcaaaggcgc cgtggaggcg
      841 cggcagcacc gccttcaccg cttcctcggg gcttgcgccg cgttcgactt cgcgcgcgac
      901 gagatggccg accacttcgg tgtccgtctg gctcttgaac tcgcggcctt cggcgaggag
      961 ttcgtcgcgg agcggcttga agttttcgat gataccgttg tggaccagca ctacgtcgcc
     1021 gacgaggtgc ggatgggcat tgtcttcggt cggcgcgccg tgcgtcgccc agcgcgtatg
     1081 ggcaatgccg ctcttgccgg gcaaatgctc ctcgccgagc ttgcgggcga gattgttcag
     1141 cttgccttcg gcgcgccgcc gctcgatccg accgtcatgg accgtcgcca caccggccga
     1201 atcatagccc cgatattcga gccgtcgcag gccctccacg agccgctcgg ccacatcgtc
     1261 cacgcccaga atgccgataa tgccgcacat cggaactgac tttcgctaaa gagtgtaggg
     1321 gatgcggata cccggcatgt tggccgggaa atcccttgtg ttgcgggtga cgaggatcgc
     1381 gccgttcacc tgggccgtgg ccagaatgat ggcatcgagc agcttcatgc gcgtgcgata
     1441 gcggatgtcc gccgccgcca ggcagatccg gctatccacc tcgacgactt cgaacggggc
     1501 gatcaagccc cgcacattat ctcgggtctc gagcggttct ccagccagta cctcggtcca
     1561 ggtgacgcgg ctgatccgat gccggcggta gcgcgacagc tcgccgctgg ccccaggtct
     1621 atcccgtagc cagtcgatca ggatgttggt atcgaaaatg gggtctgaca cgaagcctca
     1681 gtcgaaatcg cggtcttcgc gaatacggcg ctgatactcc acgccgtcgc cgatatcgtc
     1741 ccgatcgctc caatatcctc ggcctcgcgc gatccaatcc tttggctcct cgtgccgata
     1801 ggcttggacg gcttcccgaa cgagcgcggt gcgtgacttt cccgtttccg ctgcccgctg
     1861 gtccagccaa cggatatcgt cctccggaat atccacgatg gtgcgcatga taacttgata
     1921 tcacatcatg atgacaaact tcaacgggct ttcttgcggc cctgcatcat ctcgcgaaac
     1981 ttcgaggccc agccggcctt cgtcttttgc tcgccacgcc cgagcgcaag cgcatccgtg
     2041 tcgacgtcgc tcgtgatgac cgagcctgcg cctacgatgg ccccgtttcc gattttcacc
     2101 ggcgccacca aggcgctgtt cgagccgata aaggcgccgg cgccaatctc cgtccggtac
     2161 ttgaagaagc cgtcataatt gcaggtgatc gtgcccgcgc cgatgttcgc gcccgcgcca
     2221 atttccgcat cgcccagata ggtcaaatga ttggcctttg cgccgtcgcc gagccgcgcc
     2281 ttcttcacct cgacgaaatt gcccaccttg gaatcccggc cgagttccgc ccccggccgc
     2341 agccgcgcga aggggccaac ttccgcgccc ggtgcgacat gcgctccctc gatatggctg
     2401 aaggcgtgga tggtgacgcg gtcctcgatc gacacaccgg gaccgaacca gacattcggc
     2461 tcgatcgtca cgtcgcggcc gagcttggta tcgtaggaga accacacggt ctcaggcgcg
     2521 atcagggtcg ctccttcgat cattgcctgc gcacgccggt ttttctgcca gacaagttca
     2581 agcgtggcga gttcggcgcg gctgttgatc cctgccactt cggccgcgtc cgtttcgaca
     2641 accgcggaat tcctgccttg agccgcggca agcatgacga tgtcgggcag ataatattcg
     2701 cccgccgcat tttcgttctt cacctcgggc aggagcgcga agaggtcgct tgcccggacc
     2761 gccatcagcc ccgaattgca tagggtcacc gcgcgttctt ccgtggaggc gtccttgaac
     2821 tccaccatct tggcgatccg gccgttcgca tcggcgacga tccggccata ggcagccgcg
     2881 tcggcgggac ggaagccgag cacaacggcc gcgggctcgt ccgcctgatg cagccggtcg
     2941 accagcgcgc gcatggtctg gctgctcacg aacggcacgt cgccgtagag gataagcacg
     3001 tcgcctttga agccgccaag cgcctgctcc gcctgctgga cggcgtggcc ggtgccaagc
     3061 tgcggctcct ggacgacgat ctcgacccct tgcccggcga gcgccttttc caattgctcc
     3121 cggccgctgc cgaccaccac gaccgtccgc tccggcccaa gtgcatcgag cgacgcgagc
     3181 aggtgcatga gcatcggccg gccggcgatc gggtgaagca ctttgtgcag gtcggatttc
     3241 atgcgcgtgc ccttgccggc ggcaagaacg atcgcggcga gagggcgctc tgtcgtcact
     3301 cgcgcgcgct tgccacggcc gccccgcagg gggcaagggg ctcggcatgt cacgcgcgtt
     3361 cgatatcgtc gggttcgatc tcgacggcac cttgctcgac acgagcgtca gcctcgcgcg
     3421 cgccgtcaat cacgcgctga tcgaggcggg tcgcccaccg ctcgcggtgg agcaggtccg
     3481 cccgatgatc ggcggtgggg ccaagaagat gctcgaaaag gggctggaag catcgggcgg
     3541 ctacgatccc gaggacatga agcggctcta tccgatcctg ctcgatttct accgggacaa
     3601 tatctcgaaa gacacggttc cctttccggg tctgctcgat gcgctggaca agctcgccgc
     3661 ggcaggcgta agtctcacaa ttgtcacgaa caagttcgaa
//
LOCUS       DASQVK010000355         2897 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_117760,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000355 DASQVK010000000
VERSION     DASQVK010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2897
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117760"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            2..952
                     /gene="pepT"
                     /locus_tag="VE567_07655"
     CDS             2..952
                     /gene="pepT"
                     /locus_tag="VE567_07655"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: protein motif:HMM:NF003976.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045148 - tripeptide aminopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HYZ48752.1"
                     /translation="MRDYQGGDIVLPGDRSQVIRAAEHPALAGQIGHDIITSDGITLL
                     GADNKAGLAEIMDAAHFLINNPQVKHGTIKILFTPDEEIGRGVDKVDLKKLGADFAYT
                     MDGESAGHIEDETFSADGATITINGVSAHPGYAKGKMEHAIKIAAAIIDRLPKNTCSP
                     ETTEGKEGFLHPIAIEGTVEQAKLDFIVRDFTEAGLKDKEALLEGIVKDVMTNYPRST
                     WQLEVRPQYRNMKEVIDRHPEIVDYAMEAIRRAGLTPVKTSIRGGTDGSRLSFMGLPC
                     PNIFAGEHAFHSRLEWVSRQDMEKAVQTIVHLAMIWEERA"
     gene            complement(1058..1918)
                     /locus_tag="VE567_07660"
     CDS             complement(1058..1918)
                     /locus_tag="VE567_07660"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYZ48753.1"
                     /translation="MQAPQGHEQNADQIAYWNGPGGHRWADRQAAQDVLLAPVIDILI
                     DRASPRPGERVLDVGCGSGATTRAFAAAVDPTGHVLGIDVSGPMLARARELTPDNAGI
                     EYVLADATVYPFEPASFDLLASRFGVMFFADPVSSFTNLRKALRPTGRVAFACWREPS
                     DNPWMMTPLQAVYRHVPKLPPMQPEDPGPFAFASEEHVRRILGKAGFAGIALEVCPLS
                     LDLAIGRGLEAAVESALGIGPASRALQDHPEEVRAAAAKSVREVLAPLVDGESVRLPG
                     SIWLVTARAS"
     gene            complement(1918..2202)
                     /locus_tag="VE567_07665"
     CDS             complement(1918..2202)
                     /locus_tag="VE567_07665"
                     /inference="COORDINATES: protein motif:HMM:NF015735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HYZ48754.1"
                     /translation="MTGPRPSFPQDMTPQEAAIMQAHVAYCRELLRAGKALVFGPVAD
                     PAGVWGLGVLRLADDADPQDIIANDPVTKADAGFTYHVMPMLSAATPETC"
     gene            complement(2220..2519)
                     /locus_tag="VE567_07670"
     CDS             complement(2220..2519)
                     /locus_tag="VE567_07670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48755.1"
                     /translation="MRILFAAIMIAVLAGPTYAQDKPVPRYGDTDKEKSPQEKQAERD
                     AEKAYQRSLGNIPTQAGSNDPWGAMRSDSPPKPAAAAPTTKKAKTTSGTTPQKPQ"
BASE COUNT          515 a          933 c          941 g          508 t
ORIGIN      
        1 ggtgcgcgat tatcaaggcg gcgacatcgt gctgcccggc gatcggagcc aggtgatccg
       61 cgccgccgaa catccggcgc tggccgggca gatcggccac gacatcatca cgtcagacgg
      121 catcacgctt ttgggcgccg acaacaaggc agggctcgcc gagatcatgg atgcagctca
      181 tttcctgatc aataatccgc aggtcaagca cggcaccatc aaaatcctgt tcaccccgga
      241 cgaggagatc ggccgcggcg tcgacaaggt ggatttgaag aagctcggtg ccgatttcgc
      301 ctacaccatg gacggcgaga gcgccggcca tatcgaggac gagacctttt cggccgacgg
      361 cgccaccatc accatcaacg gcgtcagcgc ccatccaggc tatgccaagg gcaagatgga
      421 gcacgcgatc aagatcgccg ccgcgatcat agaccgcctg ccgaaaaaca cctgctcgcc
      481 ggagaccacc gagggcaagg aaggctttct gcacccgatc gcgattgagg ggacggtgga
      541 gcaggcgaaa ctcgatttca tcgtccgcga cttcaccgag gcgggattga aggacaagga
      601 agccctgctc gagggcatcg tcaaggacgt gatgacgaac tatccgcgct cgacctggca
      661 gctggaggtc cgcccgcaat accgcaacat gaaagaggtg atcgaccgtc accccgagat
      721 cgtcgactac gccatggagg cgatccgccg cgcaggtctg accccggtga aaacctcgat
      781 ccgcggcggc accgacggct cgcgcctgtc cttcatgggt ctgccctgtc ccaacatctt
      841 cgccggcgag cacgccttcc actcacgcct ggaatgggtg agccggcagg atatggaaaa
      901 ggcggtccag accatcgtgc atctcgcaat gatctgggaa gagcgtgcgt agctgcatcc
      961 actcgttcgt tgcgagcgca gcgaagctat ccatagtgcc gcaagctcag ctgtggattg
     1021 cttcgtcgct ttgctcctcg gaaagacgcg tgtgttgtta cgacgccctt gccgtcacca
     1081 gccagatcga tcccggcagc cgcaccgact cgccgtccac gagaggcgcc aggacttcgc
     1141 ggaccgactt ggccgcggcg gcgcgcacct cttccggatg gtcctgcagc gcacggctcg
     1201 ccgggccgat gccgagcgcg ctctccaccg cagcctccag cccgcggccg atggcgaggt
     1261 cgagcgacag cggacagact tccagcgcga tgccggcaaa gccggccttg ccgagaatgc
     1321 ggcggacgtg ttcctcggag gcgaaagcga acgggcccgg atcctccggc tgcatcggcg
     1381 gcagctttgg cacgtggcgg tagaccgcct ggagcggggt catcatccac ggattgtcgc
     1441 ttggctcgcg ccagcaggcg aacgcgaccc gccccgtcgg ccgcaatgct ttccgtaggt
     1501 tggtaaagga actcaccgga tcagcgaaga acatcacgcc gaagcgcgac gccaacagat
     1561 cgaaactcgc gggctcgaag gggtagacgg tggcgtccgc gagcacgtac tcgatccccg
     1621 cattatcagg cgtgagttcg cgtgcacggg ccagcatcgg gcctgagacg tcgatgccca
     1681 acacatggcc agtagggtcg acggcggccg caaacgcccg cgtcgtggcg ccgctgccgc
     1741 agccgacgtc gagcacgcgc tcgcccggtc gcgggctggc acggtcgatc aggatgtcga
     1801 tgaccggcgc gagcaggacg tcctgcgcgg cttgccgatc cgcccaccgg tggccgccgg
     1861 gcccattcca ataggcgatc tggtcggcgt tttgttcgtg accttgcgga gcttgcatca
     1921 gcaggtctcg ggcgttgcgg cgctgagcat cggcatcacg tggtaggtga agccggcgtc
     1981 ggccttggtg acgggatcgt tggcgatgat gtcttgcggg tcggcatcgt cggccaaccg
     2041 cagcacgccg agtccccaga cgccggcggg atcggccacc ggcccgaaca ccagcgcctt
     2101 gccggcgcgc agcagttccc tgcaataggc gacatgcgcc tgcatgatcg cggcttcctg
     2161 cggcgtcatg tcctgcggaa agctcggacg gggtccggtc aatttgcaga cgcaatattt
     2221 cattgcggtt tctggggtgt cgtgccgctc gtggtcttgg ccttcttcgt ggtcggagcc
     2281 gcggccgcag gcttcggcgg gctgtcgcta cgcatcgcgc cccagggatc gttgctgccg
     2341 gcttgcgtcg ggatgttgcc gagcgaacgc tgatacgcct tctcggcgtc ccgctccgcc
     2401 tgtttctcct gcggcgattt ttccttgtcg gtgtcgccgt agcgcggaac aggcttgtcc
     2461 tgcgcgtagg tgggtccggc cagcactgcg atcatgatcg cggcgaaaag aattctcatg
     2521 cgttgctccc cgctcgttgg cccatattgt agcggatttt gccgtcaggc caatgcggtc
     2581 caaggcggtg acctcgtcgg attcgaggtt ccgtgtccgc gggtgcgaca ccggccggcc
     2641 gcctgttcga cgccagattg tcggggtcgg accctggcgc tcgggctgtc ccgcagccgc
     2701 cctaaagcga aaaacccggc atgaatgccg gggcccgcga ttgccgcagc gtacatccgg
     2761 ctgcgacgat catccctgac tagcatcgtt tggtgaacga aatatgaaga ctcgggttcc
     2821 ggagtaccga acgcgttgag gcgcctgatt ttcgcgaccg gaacggagcc gtgaacgtcg
     2881 tcaattcatg ttatcgc
//
LOCUS       DASQVK010000356         2163 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_370309,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000356 DASQVK010000000
VERSION     DASQVK010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370309"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(200..1096)
                     /gene="bla"
                     /locus_tag="VE567_07675"
     CDS             complement(200..1096)
                     /gene="bla"
                     /locus_tag="VE567_07675"
                     /EC_number="3.5.2.6"
                     /inference="COORDINATES: protein motif:HMM:NF033103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008800 - beta-lactamase activity
                     [Evidence IEA];
                     GO_process: GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class A beta-lactamase"
                     /protein_id="HYZ48756.1"
                     /translation="MITRRRFATGACTALVASVFIGESNGARAARGFSDGLAGDLAKI
                     EQESGGRLGVAVLDTVTGAWSGHRAGERFPMCSTFKLLAAAAILARVDAGKERLDRRI
                     RFDTGDVVVNSAVTKDRVGGSGMSLAELCEAAMTFSDNTAGNLLLASLGGPAGLTEYA
                     RSLGDKATRLDRIEPDLNEATPGDPRDTTTPAAMLSNLRTLLFGDVLSAESKDQLTRW
                     LLGNKTGDTRLRAGLPGNWRVGDKTGSGERGTTNDVGVVWPPGAAPILISIYLTETSA
                     TGEQRNATLAAVGRAVASALDR"
     gene            1213..2130
                     /locus_tag="VE567_07680"
     CDS             1213..2130
                     /locus_tag="VE567_07680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017672597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYZ48757.1"
                     /translation="MIRSHVPLNALRAFEASARHLSFTKAGWELRVTQAAVSHQVKSL
                     EEILGVRLFRRLPRGLVLTDEGQALLPVLAESFGRIRATLDRFENGHFREVVTVGTVG
                     TFATGWLLPRLQAFCDAHPYVDLRILTNNNRVDIAGEGLDYAIRFGEGSWHATDATRL
                     FAAPLSPVCAPHIAERLGQPVDLHEQVLLRSYRADEWARWFAAAGLACPMTRGAIFDS
                     SVTMAEAAAQGGGVALLPVRMFARELRQGRLVRPFALEIAVGDYWLTSLKSKQETAGM
                     RAFRNWLLEAVSTPESGSGNPHAQHGPGA"
BASE COUNT          354 a          715 c          730 g          364 t
ORIGIN      
        1 gcgacagcgg cgcgtgcggt cgtcggtgct gttggtgccc ttggtggtcg atcaggccgg
       61 tctcgaacca ccaaggacac gacgcacacc agcccggaag tagccacggg gccgctggcg
      121 tggcatggga ctgggggtca accggacttt ggagagaccg gagccgaacg cgctgtgatc
      181 cggtcgatcg gcatcaggtt tagcgatcca atgcggatgc gaccgctcgt ccgacggcgg
      241 ccagcgtcgc atttcgttgc tcgcccgtcg ccgacgtctc ggtgagatag atggaaatga
      301 ggatcggcgc cgctcccggt ggccagacga cgccgacgtc gttcgtcgtg ccccgctcgc
      361 cggaccctgt cttgtcgccg acccgccaat tgcccggcag cccggctcga agacgggtgt
      421 cgccggtctt gttgccgagc agccagcgcg tgagctgatc cttcgactcg gccgagagaa
      481 cgtcgccaaa aaggagtgtg cgcagattcg acagcatcgc ggccggtgtc gtggtatcgc
      541 gcgggtcgcc gggcgtcgcc tcgttcagat cgggctcgat ccgatcgagg cgagtcgcct
      601 tgtcgccgag cgatcgggca tattcggtca gtcccgccgg gccgcccagg ctggcgagga
      661 gcaggttgcc ggctgtgttg tcgctgaacg tcatcgccgc ttcgcagagc tcggcgagcg
      721 acatgccgga cccgcccact cgatccttgg tgacggcgga attcacgacc acgtcgccgg
      781 tgtcgaaccg gatgcgtctg tcgagacgct ccttccctgc atcgacgcga gcgaggatgg
      841 ccgcggcggc cagcagcttg aaagtgctgc acatgggaaa gcgctcgccg gcccggtgac
      901 cggaccaggc cccggtgacc gtgtcgagaa cggcaacgcc cagccggccg ccgctctcct
      961 gctcgatctt cgcgagatcg ccggccagcc catccgagaa gccgcgagcc gcgcgggcgc
     1021 cgttcgattc gccgatgaag acggacgcga cgagggcggt gcatgcgccc gtcgcgaacc
     1081 gacgcctggt gatcatccaa atctcctgtt gttttgcggg cagatcgcgg gcggagcatg
     1141 caaatcgcgc aacggattga caaaccacaa taaatctgga gagccattag aaaatttgag
     1201 gctgcctcca ccatgatccg atcgcatgtg ccgctgaacg cgctgcgcgc cttcgaagcg
     1261 tcagcccggc atctgagctt cacgaaggcc ggatgggaat tgcgtgtgac gcaggcggcg
     1321 gtcagccatc aggtgaagag cctcgaggag atcttgggag tgcgcctgtt ccgcaggctt
     1381 ccgcgcgggc tcgtgctgac cgatgaaggg caggccttgc tgcccgtgct ggccgaatcg
     1441 ttcggccgga tccgcgccac gctcgaccgg ttcgagaacg gccactttcg cgaagtggtg
     1501 accgtcggca ccgtcgggac cttcgcgacc ggatggctgc tgccgcggct gcaggcgttc
     1561 tgcgacgccc atccatatgt cgacctccgc atcctgacca acaacaaccg tgtcgacatc
     1621 gcgggcgaag gcctcgacta cgccattcgg ttcggggagg ggtcatggca cgccactgac
     1681 gccacgcgcc tcttcgcggc gcccttgtcg ccggtctgcg cccctcatat cgccgagcga
     1741 ctaggccagc cggtcgatct gcacgagcag gtgctgctgc gctcctatcg ggccgacgag
     1801 tgggcgcgct ggttcgccgc ggccggcctt gcctgcccga tgacgcgggg ggcgatcttc
     1861 gactcgtccg tcacgatggc cgaagccgcc gcgcaaggcg gcggcgtcgc gctgctgccg
     1921 gtccggatgt tcgcgcgcga attgcggcag ggccgcctcg tccgaccctt tgccctcgag
     1981 atcgcggtcg gcgactattg gctcacatcg ctcaaatcga agcaggaaac cgcggggatg
     2041 cgcgcgttcc gaaactggtt gctggaggcc gtctccactc ccgaaagcgg gtccggaaac
     2101 cctcacgcac aacacggccc tggcgcgtaa tcgtcgcgag cgcggctaaa accgtaatgg
     2161 aca
//
LOCUS       DASQVK010000357         4975 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_212945,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000357 DASQVK010000000
VERSION     DASQVK010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4975)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4975)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4975
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212945"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..268
                     /locus_tag="VE567_07685"
     CDS             <1..268
                     /locus_tag="VE567_07685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011543436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidase M48"
                     /protein_id="HYZ48758.1"
                     /translation="AKDNQNPFAWYQLGVIYDHKGDAARAALATAERYNLEGNAKLAF
                     VNARMAMSGIPRGSADWVRAQDIFMVSEPEMKKKKKDKGGTTDQ"
     gene            265..975
                     /locus_tag="VE567_07690"
     CDS             265..975
                     /locus_tag="VE567_07690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010407391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HYZ48759.1"
                     /translation="MTRWFSLGAVALVAAAVASLGTAALVEHRGRGTDVRAYLLANPE
                     VLQEAMERLRAKQTAAQIAPNRHAIETPYAGAWIGAQKPDVVLVQFFDYACGYCRASL
                     PDVHRLVKEDPRLRIVFRELPILSRGSEVAARASLAAAEQGRFAAFHDAMYATGRPDA
                     ETVAAAASAAGLDRAKLQSAMTAPRAEQELGQNIELARALGFTGTPSWVVGNQILTGA
                     VGYERLKKAVEAARAGRS"
     gene            complement(990..1655)
                     /locus_tag="VE567_07695"
     CDS             complement(990..1655)
                     /locus_tag="VE567_07695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RlmE family RNA methyltransferase"
                     /protein_id="HYZ48760.1"
                     /translation="MRGAGRQRVRTARNRTAASTRWLERQLNDPYVRRAKAEGYRSRA
                     AYKLIELDERFGILKGAKRIVDLGVAPGGWAQVARKRHPGATIVGIDLLPTDPIEGVT
                     LFQMDFTDETAPDVLRKALGGPADLVMSDMAANTVGHARTDHLRTMALVESGAWFAIE
                     TLRPGGSFIAKVLAGGADNELVALLKKHFTTVKHAKPPASRKESSEWYVIAQGFKGEP
                     LSP"
     gene            complement(1652..2707)
                     /locus_tag="VE567_07700"
     CDS             complement(1652..2707)
                     /locus_tag="VE567_07700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006833128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA phosphatase family protein"
                     /protein_id="HYZ48761.1"
                     /translation="MTAAMADVSPLPLQPGIARVSTASHAHAAIGPRRTYGALDLGTN
                     NCRLLIARPAPEGFVIVDAFSRIVRLGEGLAATGRLSDAAMERAVSALRICAEKLRRR
                     HVHISRSVATEACRRAANADQFVERVRRETGILIDVIPAEEEARLAVMGCHILLEDGD
                     GPALIFDIGGGSTELVLVDTCGPLPETLDWYSAPWGVVSLTEVEPGDTSTLEGRLDIY
                     NRMRARVSQSFAGFAARLPQSAREHMRLLGTSGTVTTLASVHLGLPSYERSAVDGLVV
                     PADSMRGVSQSLSRMSHAERVELPCIGHERADLVVAGCAILESILDIFPAERLGVADR
                     GIREGILRTLMARDGFQ"
     gene            2944..3522
                     /locus_tag="VE567_07705"
     CDS             2944..3522
                     /locus_tag="VE567_07705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HYZ48762.1"
                     /translation="MKNLILATLAASALATPALAQDAAAFTGFKVEGLVGYDKLKGKG
                     ESRDGVAYGVGVGYDHQFGRVVAGLEGEWMDSNTDGCRSNFLTATDTICARAKRDLYV
                     GGRIGTPVTPSTLLYAKAGYTNARVETSYTDTAAPANNVTGRDNLNGVRVGAGVEQKF
                     GPNLYAKAEYRYSNYEQGVSRHQVLGGIGFRF"
     gene            3677..4789
                     /gene="dnaN"
                     /locus_tag="VE567_07710"
     CDS             3677..4789
                     /gene="dnaN"
                     /locus_tag="VE567_07710"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020819146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HYZ48763.1"
                     /translation="MKATIERATLLRGLAHVQSVVERRNTIPILSNVLIEASAEGGIR
                     LMATDLDLQIVETVEAAVDQAGATTVSAHTLFDIVRKLPEGSQVELNAAEGRMAINAG
                     RSRFNLQTLPRDDFPIIAEGELPTRFELPGATLRQIIDKTRFAISTEETRYYLNGIFL
                     HVSDDAQPVLKAAATDGHRLARVTVSRPEGADGMPDVIVPRKCVAELRKLLEEVDGTV
                     GVSLSNTKIRFDLGAAILTSKLIDGTFPDYSRVIPTSNDKLLKLDPKSLMEGVDRVST
                     IASEKTRAVKLALDRDRVTLSVTSPETGTASEEVPGDYAAQAFEIGFNARYLMDILHQ
                     IDGDMVEVHLADAAAPTLIRESDKAPALYVLMPMRV"
BASE COUNT          886 a         1639 c         1647 g          803 t
ORIGIN      
        1 cgcgaaggac aatcagaacc cgttcgcctg gtatcagctc ggcgtcatct atgaccataa
       61 gggcgacgcc gcccgcgcgg ctctcgcgac ggccgagcgc tacaatctgg aaggcaatgc
      121 caagctggcg ttcgtcaatg cgcggatggc gatgtcaggc atcccgcgcg gttccgccga
      181 ttgggtgcgc gcgcaggaca tcttcatggt ctccgagccc gagatgaaaa agaagaagaa
      241 agacaagggc gggactaccg atcaatgacg cgttggtttt ctcttggggc ggtcgcgctc
      301 gtggcggccg cggtggcttc gctcggcacc gccgcgctgg tcgagcaccg cgggcgtggc
      361 accgacgttc gcgcttatct gctcgccaat cccgaagtgc tgcaggaagc gatggagcgg
      421 ctgcgtgcca agcagaccgc cgcgcagatc gcgcccaacc gccatgcaat cgagacgccc
      481 tatgccggcg cctggatagg cgcgcagaag cccgatgtcg tgctcgtcca gttcttcgac
      541 tatgcctgcg gctattgccg cgccagcctg ccggacgtgc accggctggt gaaggaagac
      601 cccaggctcc ggatcgtctt tcgcgaactg ccaatcctca gccgcggcag cgaagtcgcc
      661 gcgcgcgcca gcctcgccgc ggccgagcag ggccgcttcg ccgccttcca cgacgccatg
      721 tacgccaccg gccggcccga cgcggagacg gtcgccgccg ccgccagcgc tgccgggctc
      781 gaccgcgcga agctgcagtc ggccatgacc gcgccgcgcg ccgaacagga actgggccag
      841 aatatcgagc tcgcccgcgc gctgggcttc accggcacgc caagctgggt ggtgggcaac
      901 cagattctca ccggcgcggt cggctatgag cggctgaaaa aggcagtgga ggcagcgcgg
      961 gccgggcgga gctgagcaat ctctctccct caaggggaga ggggttctcc cttgaacccc
     1021 tgcgcgatca cataccattc cgaggattcc ttgcggctcg ccggcggctt ggcgtgcttg
     1081 acggtcgtga aatgcttctt gagcagcgcg accagctcgt tgtcggcgcc gcccgccaac
     1141 accttggcga tgaagctgcc gccgggccgc agcgtctcga tcgcgaacca ggcgccgctt
     1201 tcgaccagcg ccatggtgcg cagatgatcg gtccgcgcgt gaccgacggt attggcggcc
     1261 atgtcggaca tgacgaggtc cgccgggccg cccagcgcct tgcgcagcac gtccggcgcg
     1321 gtttcgtccg tgaaatccat ctggaagagc gtgacacctt cgatcggatc ggtcggcaac
     1381 aggtcgatgc ccacgatcgt cgcgccgggg tgacgcttgc gagcgacctg ggcccagccg
     1441 ccgggcgcca cgcccagatc gacgatccgc ttcgcaccct tcagaatgcc gaatcgctcg
     1501 tccagctcga tcagcttata cgccgcgcgc gagcgatagc cttcggcctt ggcgcgccgt
     1561 acataggggt cgttgagctg ccgctcgagc caacgcgtcg aagcggcggt gcgattgcgc
     1621 gcggtgcgga cccgctgccg cccggcgccc ctcattgaaa accgtcgcgc gccatcagcg
     1681 tgcgcaaaat gccttcgcga atgccgcgat cggcgacgcc gagccgctcg gccgggaaaa
     1741 tgtcgagaat cgattcaagg atggcgcagc cggcgacgac caggtccgcg cgttcatggc
     1801 cgatgcaggg cagctcgact cgctcggcat gcgacatgcg cgagagcgac tggctgaccc
     1861 cgcgcattga gtccgccgga accaccagac cgtcgaccgc gctccgctca tagctgggca
     1921 ggcccagatg gacgctggcc agcgtcgtca cggtgccgct ggtgccgagc aggcgcatat
     1981 gttcgcgcgc gctttgcggg aggcgggcgg cgaaaccggc gaaactctgg gacacgcgcg
     2041 cgcgcattcg gttgtagatg tcgagccggc cttcgagcgt ggacgtgtcg cccggctcca
     2101 cttcggtcag cgagacgaca ccccaagggg cgctgtacca gtcgagcgtc tccggcagcg
     2161 ggccgcaggt gtcgaccagc accagctcgg tcgaaccgcc gccaatgtcg aagatcagcg
     2221 cgggaccgtc gccgtcctcc agcaggatat ggcagcccat caccgcgagc cgggcttcct
     2281 cctctgccgg gatgacgtcg atcagaatcc cggtctcccg tcgcacccgc tcgacgaact
     2341 gatcggcatt ggcggcgcgg cggcacgctt ccgtcgcgac agagcgcgaa atatggacat
     2401 ggcgccggcg caatttctcg gcgcagatgc gcagcgccga aaccgcgcgc tccatcgccg
     2461 cgtcgctgag gcggcccgtc gcggcgagcc cctcgcccag ccggacgatc cgggaaaatg
     2521 cgtcgacaat cacgaaaccc tcgggcgcgg gacgcgcgat cagcaggcgg caattattgg
     2581 taccaaggtc cagcgcgcca taggtgcggc gcggcccgat cgccgcgtgg gcatggctgg
     2641 ccgtgctcac ccgggcgata ccgggctgca gcggcagggg cgaaacgtcc gccattgctg
     2701 ccgtcactct atctttctcc ggtcggaaac gccgccggta cttggccgcg cttctaccgt
     2761 tttgtcggac tgcgggcaag gcgagtgttg cgtaagtgca acatcgtcgc tcgttgtgca
     2821 cggttaatct acggttgctt gaggttcagc ttccggacgc catctgagcg cctccccgcg
     2881 cagccacccc ttcggcggcg gggagagtga agaacagaat gtaagtagag tggagtgaac
     2941 ctcatgaaaa atctgatcct cgcaaccctc gcggcttccg ccctggcgac cccggccctg
     3001 gcgcaagacg cggcagcttt caccggcttc aaggtcgaag gcttggtcgg atacgacaag
     3061 ctgaagggta agggcgaaag ccgcgacggc gtcgcctatg gcgtcggtgt cggctatgat
     3121 catcaattcg gccgcgtcgt cgcgggcctc gaaggcgaat ggatggattc caacaccgat
     3181 ggttgccgga gcaatttcct gaccgccacg gacaccatct gcgcgcgcgc caagcgcgac
     3241 ctgtatgtcg gcggccgcat cggcaccccg gtcacgccga gcactttgct ttacgccaag
     3301 gccggctaca ccaatgcccg ggtcgagacg agctacacgg acactgccgc cccggcgaac
     3361 aacgtcaccg ggcgcgacaa tctgaacggc gtgcgcgtcg gcgcgggcgt cgagcagaag
     3421 ttcgggccca acctttatgc caaggccgag tatcgctact cgaactatga gcagggcgtt
     3481 tcgcgccacc aggtgctggg cgggatcggc ttccgcttct aagcgaaccc ccacggccgg
     3541 tcgctgtgga aaacaggggt cggggcgctt gctccggccc ctttttttgt ccagtaaacc
     3601 cggtgaaccg gggcgttccc gccccacctt ttaaaacacc ggattgacag ggcccggata
     3661 cggcccgggg ggacccatga aggcgacgat cgaacgggct acgctgctgc gaggcctcgc
     3721 tcacgtgcaa tcggtggtcg agcgccgcaa caccatcccc attttgtcga acgtgctgat
     3781 cgaggcttcg gccgagggcg gcatccggct gatggcaacc gacctcgact tgcagatcgt
     3841 ggaaacggtg gaagccgcgg tcgaccaggc gggcgcgacc acggtgtcgg cgcacacctt
     3901 gttcgatatc gtccgcaagc tgcccgaagg cagccaggtc gagctcaacg ccgccgaggg
     3961 gcggatggcg atcaatgccg gacgttcgcg cttcaatctg cagacgctgc cgcgcgacga
     4021 tttcccgatc atcgccgagg gcgagctgcc gacccggttc gagctgcccg gggcgacact
     4081 gcgccagatc atcgacaaga cgcggttcgc gatctcgacc gaggaaacgc gctattatct
     4141 gaacggcatt ttcctgcacg tctcggacga cgcgcagccg gtgctgaagg cggcggcgac
     4201 cgacggccac cggctggccc gcgtgaccgt gtcgcggccc gaaggcgcgg acggcatgcc
     4261 cgacgtgatc gtgccgcgca aatgcgtggc cgagctgcgc aagctgctcg aggaagtgga
     4321 cggcacggtc ggcgtatcgc tgtcgaacac gaagatccgc ttcgacctgg gcgcggcgat
     4381 cctcacgtcc aagctgatcg acgggacttt ccccgattac agccgggtga tcccgacctc
     4441 gaacgacaaa ttgctgaagc tcgatcccaa gagcctcatg gaaggcgtgg accgtgtctc
     4501 gacgatcgcg tcggaaaaga cccgcgccgt caagctggcg ctggaccgcg accgggtgac
     4561 gctgtctgtg accagccccg aaaccggcac cgcatccgaa gaagtgcccg gcgactatgc
     4621 cgcccaggcc ttcgaaatcg gcttcaacgc ccgctatttg atggacatcc ttcaccagat
     4681 cgacggcgac atggtcgagg tgcacctggc ggacgcggcg gcgccgacgc tgatccggga
     4741 gagtgacaag gcgccggcgc tgtatgtgct gatgccgatg cgggtgtgat caggggagca
     4801 cgtcatgccg ttggattgcg agcgagcaaa ggggatgagc cagcagatcc aaggtgactt
     4861 cgatacgctt tatgatgagc tctcccggtt ttggcggcgc gattatttca aagatgtgca
     4921 ccagctgaat tggcgcttga agaagcagtc agtgctctcg gcgggtttgg agaaa
//
LOCUS       DASQVK010000358         3384 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_307656,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000358 DASQVK010000000
VERSION     DASQVK010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3384)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3384)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3384
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307656"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1702
                     /gene="shc"
                     /locus_tag="VE567_07715"
     CDS             <1..1702
                     /gene="shc"
                     /locus_tag="VE567_07715"
                     /EC_number="5.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008067666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051007 - squalene-hopene cyclase activity
                     [Evidence IEA];
                     GO_process: GO:0019746 - hopanoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="squalene--hopene cyclase"
                     /protein_id="HYZ48764.1"
                     /translation="FHGGAFDVSASVKAYFALKMIGDDPDAPHMAKARAAIHAAGGAA
                     AVNVFTRIQLALFGQMAWDQIPTMPVELILLPRWFPIHLSKMSYWARTVIVPLLVIAA
                     KRPLARNPRGIGVEELFTQRSAPLRSQAAGAKRAWQLFFGGLDRVLKTVEPLWPAKSR
                     ERAIGACVDFVVERLNGEDGLGAIYPAMANSVMMFDCLGYPEDHPHRRTARGSLEKLL
                     AIGEDEAYCQPCVSPVWDTALAAHAMLEAGGDANEARAQAALEWLKPRQVLDVAGDWA
                     DERPGVRPGGWAFQYANPHYPDLDDTAVVVMAMDRARDKLAPAGGYDEAIARGAEWTM
                     GLQSKDGGWGAFDADNSYHYLNNIPFADHGALLDPPTSDVTARCLSMLAQLGEPRDSA
                     RMQAAIRFLEAEQMPDGSWFGRWGVNYVYGTWSVLCALNAAGLEPSHPMVKRGADWLV
                     SIQNPDGGWGEDCDSYRLDYSGYAAAPSTASQTGWALLALMAAGRVDDPAVERGVAYL
                     LATQEGDGLWGQEHYTGGGFPRVFYLRYHGYPKYFPLWAVARYRNLKRSNTDRVTAGM
                     "
     gene            1699..2352
                     /locus_tag="VE567_07720"
     CDS             1699..2352
                     /locus_tag="VE567_07720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010215762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphorylase"
                     /protein_id="HYZ48765.1"
                     /translation="MTFIVACGLKREARLFGRDVRAVAGGGDSSRLARELDALAAERP
                     GVIVSSGLAGALDPALRPGDVVLGGDAGFAERVNAALPNAALGKIVGADKPVATGAEK
                     RALRAASGAVAVDMESHVAERIARARGLPFGVIRVISDSADETLPPAAILGMAADGSV
                     ALRRVLASLARQPGQLPALIRTGRHAGRAFRGLGDVYDVLRRAGILGLDLREFALDV"
     gene            complement(2275..>3384)
                     /gene="hpnH"
                     /locus_tag="VE567_07725"
     CDS             complement(2275..>3384)
                     /gene="hpnH"
                     /locus_tag="VE567_07725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008067667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosyl-hopene transferase HpnH"
                     /protein_id="HYZ48766.1"
                     /translation="SYALRQHMKGGRYPLVLMLEPLLRCNLACAGCGKIDYPDPILNQ
                     RLSYDQCMAAIDECGAPAVSIAGGEPLLHREMPEIVRGFIAKKKFVILCTNALLLKKK
                     IDDYAPSPWFTWSIHLDGDQAMHDKSVCRGGVYDVAVEAIEIAKAKGFRVQVNCTVFD
                     GADPERLAAFFDAMKAMGVEITISPGYAYERAPDQEHFLNRQRTREFFRAVFRRGQGG
                     KAWGFTNSPLFLDFLAGNQTYECTPWSMPLRTVFGWQKPCYLLGEGYAETFDELMSGT
                     DWDRYGVGKYEKCADCMVHCGFEGTAATDAIRHPLKMLRIGRQGVRTEGPMAPDIDLS
                     KQRPAEHVYSSHVERELAKIKAENPGAAKHIVHVA"
BASE COUNT          516 a         1081 c         1208 g          579 t
ORIGIN      
        1 gttccacggc ggcgcgttcg acgtctcggc gagcgtgaag gcctattttg cgctgaagat
       61 gatcggcgac gatccggatg cgccgcacat ggccaaggca cgggcggcga tccatgcggc
      121 gggcggtgcg gccgcagtca atgtcttcac gcgcatccag ctcgctttgt tcgggcagat
      181 ggcctgggac cagatcccga cgatgcccgt cgagctgatc ctgctcccgc gctggttccc
      241 catccatctg tccaaaatgt cctattgggc gcggacggta atcgtgccct tgctggtgat
      301 cgcggcgaag cggccgctgg cgcgcaatcc gaggggtatc ggcgtcgagg agctgttcac
      361 gcaacgctcc gcgccgctca ggagccaggc cgccggcgcc aagcgggcgt ggcagctttt
      421 cttcggcggg ctcgatcggg tgctgaaaac cgtcgagccg ctctggccgg cgaagagccg
      481 ggagcgcgcg atcggggcct gtgtcgactt cgtcgtcgag cggctgaacg gtgaggacgg
      541 gctgggcgcg atctacccgg cgatggcgaa cagcgtgatg atgttcgact gtctcggcta
      601 tcccgaggac catccgcacc ggcggacggc ccggggttcg ctcgagaagc tgctcgcgat
      661 cggcgaggac gaagcctatt gccagccttg cgtctcgccg gtctgggaca cggcacttgc
      721 cgcccatgcg atgctggaag ccggcggcga cgcgaacgag gcgcgcgcgc aggcggcgct
      781 ggagtggctc aagccgcgcc aggtgctcga tgtggcgggc gattgggcgg acgagcggcc
      841 gggcgtcagg ccgggcggct gggcgtttca atatgccaat ccgcactatc ccgatctcga
      901 cgacacagcg gtggtggtga tggcgatgga ccgcgcgcgg gacaagctcg caccggcggg
      961 cggctatgac gaagcgatcg cgcgcggggc cgaatggacc atgggcctgc agtcgaagga
     1021 cggcggctgg ggggcgttcg acgccgacaa cagctatcat tatctgaaca acatcccgtt
     1081 tgccgatcac ggcgcgctgc tcgacccgcc gaccagcgac gtgactgcgc gttgcctgtc
     1141 gatgcttgcc cagctcggcg agccccggga ctcggcgcgg atgcaggccg cgatccggtt
     1201 cctcgaagcc gagcagatgc cggacgggag ctggttcggg cgctggggcg tgaattacgt
     1261 ttacgggacc tggtctgtgc tgtgcgcgct caacgcggcg gggctggagc cgagccatcc
     1321 catggtcaag cgtggcgccg actggctggt ctcgatccag aacccggatg gcggctgggg
     1381 cgaggattgc gacagctatc ggctcgatta ttcgggctat gccgcggcac cctcgaccgc
     1441 gtcgcagacc ggctgggcgc tgctggcgct gatggccgcg ggccgggtgg acgatccggc
     1501 ggtcgagcgg ggcgttgcct atctgctcgc cacccaggag ggcgacgggc tttgggggca
     1561 ggagcattat acgggcggcg gctttccgcg cgtcttttac ctgcgctatc acgggtatcc
     1621 gaaatatttc ccgctctggg cggtggcgcg ctaccgcaac ctcaagcgct cgaacacgga
     1681 tcgtgtgacg gcgggcatgt gaccttcatc gtcgcctgcg ggctcaagcg cgaagcgcgc
     1741 ctgttcggcc gggacgtgcg ggctgtcgcc ggcggcgggg attcctcgcg gcttgcacgc
     1801 gaactcgatg ccttggcggc ggaacggcca ggcgtcatcg tgtcgagcgg gctggcgggc
     1861 gcgctcgatc cggcgctgag gccgggcgat gtcgtcctgg gtggcgatgc gggctttgcc
     1921 gagcgagtaa acgcggcgct gccgaacgct gccctgggca agatcgtcgg tgccgacaag
     1981 ccggtggcga cgggggcgga aaagcgcgcc ctgagggctg caagcggagc ggtcgccgtc
     2041 gatatggaaa gccatgtcgc ggagcgcatc gcgcgcgctc gcggcctgcc cttcggcgtg
     2101 atccgcgtga tttccgacag tgcggacgag acgctgccgc ccgctgcgat cctgggcatg
     2161 gccgccgacg gctcggtcgc gcttcgccgg gtgctggcct cgcttgcgcg ccagcccggc
     2221 cagctgccgg cgctgatccg caccggccgc catgccggcc gcgcctttcg cgggctaggc
     2281 gacgtgtacg atgtgcttcg ccgcgccggg attctcggcc ttgatcttcg cgagttcgcg
     2341 ctcgacgtgt gacgaataaa catgctcggc cgggcgctgt ttcgacagat cgatgtcggg
     2401 cgccatcggg ccttcggtcc gcacgccttg ccggccgatg cggagcatct tgagcggatg
     2461 ccggatcgcg tcggtcgcgg ccgtcccctc gaacccgcaa tgcaccatgc agtcggcgca
     2521 tttctcgtat ttgccgacgc cgtagcggtc ccaatcggtc ccgctcatca gctcgtcgaa
     2581 cgtctcggca tagccttcgc ccagcaaata gcagggcttt tgccagccga agaccgtccg
     2641 cagcggcatc gaccagggcg tgcactcata ggtctggttg ccggcgagga agtcgaggaa
     2701 caacggcgaa ttggtgaagc cccaggcctt gccgccctgg ccgcgccgga acaccgcgcg
     2761 gaagaattcg cgcgtgcgct gccggttgag gaaatgctcc tgatcgggcg cgcgctcata
     2821 ggcatagccg ggcgaaatgg tgatctcgac gcccatcgcc ttcatcgcgt cgaagaacgc
     2881 ggcgagccgt tccggatcgg cgccgtcgaa cacggtgcag ttgacctgca cgcggaagcc
     2941 cttggccttg gcgatctcga tcgcttcgac ggccacgtca tagacgccgc cgcgacacac
     3001 ggacttgtcg tgcatcgcct ggtcgccgtc gagatggatc gaccaggtga accagggcga
     3061 gggagcgtag tcgtcgatct tcttcttgag aagcagcgcg ttggtgcaga ggatcacgaa
     3121 cttcttcttc gcgatgaagc cgcgcacgat ctccggcatt tcccggtgca gcagcggctc
     3181 accgcccgcg atggacaccg ccggagcgcc gcattcgtcg atcgccgcca tgcactgatc
     3241 gtagctcaga cgctggttca ggatcggatc gggataatcg atcttgccgc accccgcgca
     3301 ggcgagattg cagcgcaaga gcggctccag catcaggacg agcgggtagc gcccgccttt
     3361 catgtgctgc ctgagcgcat agga
//
LOCUS       DASQVK010000359         2294 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_87117, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000359 DASQVK010000000
VERSION     DASQVK010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2294
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87117"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..449)
                     /gene="era"
                     /locus_tag="VE567_07730"
     CDS             complement(<1..449)
                     /gene="era"
                     /locus_tag="VE567_07730"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009821531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HYZ48767.1"
                     /translation="MSASQESGVNEKETRCGLVAIVGAPNAGKSTLVNALVGQKVAIV
                     SPKAQTTRARLMGLAIEGASQIMLVDTPGIFEPRRRLDRAMVQAAWGGAADADLIVLV
                     VDAKAGLGPKVMDIVEGLKSRPEPKLLVLNKVDIAAKDKLLVHTQRLT"
     gene            complement(446..1135)
                     /gene="rnc"
                     /locus_tag="VE567_07735"
     CDS             complement(446..1135)
                     /gene="rnc"
                     /locus_tag="VE567_07735"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HYZ48768.1"
                     /translation="MSRRTGRGVSEFADWIESTLGRAARDLSLYERATTHSSRDESDY
                     ERLEFLGDRVLGLAIASWLYERHPHEPEGKLSWRLNALVSRVVCADVGREIGLRPHLR
                     LGKQARDDGAADSDNVLGDVVEALIGALYLDHGFEAAQAFIRARWQDRMGGQLAAPQH
                     PKSALQEWAAAHRRKPPSYEVTGREGPQHNPRFTVTVSIKGAGEASAEGASKQEAETA
                     AAKMLLERLGE"
     gene            1194..2099
                     /locus_tag="VE567_07740"
     CDS             1194..2099
                     /locus_tag="VE567_07740"
                     /inference="COORDINATES: protein motif:HMM:NF016241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF481 domain-containing protein"
                     /protein_id="HYZ48769.1"
                     /translation="MLDQAPPPPAVQAAAAEPAIPAELKAMLDAAIADGDEKVIDKLF
                     GYAEHARPDLKAALAELRGAHRQQVAASRAEAAEKARRKLAEAGPLDDWTGQVEFGAS
                     WSTGPANSLGAVGALDLSREGIAWTHKLQLRGEVQDTNGVRAVERVIASWQPRYALAP
                     EGYAFGLAQYEHDPALGYDTRYTAGLGAGWSLNSGKALKLSIEGGPALRYTIHAGAER
                     TRFAGRGTLDLGLAIGPRLDFAQRASVFYEDGTSSGVLTSTLDSKISEKLKLRLTYEY
                     RVEGDGLSGSTSSGSLSRASIVYRL"
BASE COUNT          351 a          823 c          722 g          398 t
ORIGIN      
        1 gtcagccgct gggtatggac gagcaatttg tccttggccg cgatgtccac cttgttgagc
       61 accagcaatt tgggctcggg ccggctcttc agcccctcga caatgtccat gaccttgggg
      121 ccgagcccgg ccttggcgtc cacaaccagc acgatcaggt cggcgtccgc cgcgccgccc
      181 caggccgcct gcaccatcgc ccggtccagc cgccgccggg gctcgaaaat gcccggcgtg
      241 tcgaccagca tgatctggct cgcgccttcg atcgccaggc ccatcagccg cgcccgcgtg
      301 gtctgcgcct tggggctgac aatggcgact ttctgcccga ccagcgcgtt caccagtgtc
      361 gacttgcccg cattgggcgc gcccacaatc gctaccagcc cgcagcgggt ctctttctcg
      421 tttacgccgg actcctgact ggcactcact cgcctaacct ctccaacaac attttcgccg
      481 ccgccgtctc ggcctcttgc ttggaggcgc cttccgcgct cgcttcgccc gcgcccttga
      541 tgctgacggt cacggtgaag cgcggattgt gctgcggccc ttcgcgcccg gtcacttcat
      601 agctgggcgg cttgcggcga tgcgccgccg cccattcctg cagcgcggac ttgggatgct
      661 gcggcgcggc aagctggccg cccatccggt cctgccagcg cgcccggatg aacgcttgcg
      721 ccgcctcgaa gccatggtcg agatagagcg cgccgatcag cgcctcgacc acatcgccca
      781 gcacattgtc gctatcggcc gcgccgtcgt cgcgcgcctg cttcccgagg cggagatgcg
      841 gccgcagccc gatctcccgc cccacgtccg cgcagacgac gcgcgagacg agcgcgttca
      901 gccgccacga caatttgccc tcgggctcat gcggatggcg ctcgtacagc cagctcgcga
      961 tcgccagccc cagcacccgg tcgcccagga attcgaggcg ctcataatcg ctttcgtcgc
     1021 ggctgctgtg cgtcgtcgcg cgctcataga ggctgaggtc gcgcgcagcc cgcccaagcg
     1081 tggactcgat ccaatcggcg aattcgctca ccccacggcc tgtgcggcgg ctcatcgcaa
     1141 gcgtcaagca gggtgggttg gttccggcgg cctgactcac tattgttggc cttatgctgg
     1201 atcaagcgcc cccgccgccg gccgttcagg ccgccgccgc cgagcccgcc attccggcgg
     1261 agctcaaggc gatgctcgac gcggcgattg ccgatggcga cgagaaagtc atcgataagc
     1321 tgttcggcta tgccgagcac gcccggcccg atttgaaggc ggcgctggcc gaactgcgcg
     1381 gcgcgcaccg gcagcaagtc gcggcaagcc gggccgaggc ggcggagaaa gcccgccgca
     1441 agctcgccga agccggaccg ctcgacgact ggaccggcca ggtcgaattc ggcgcatcct
     1501 ggtcgacagg gcccgccaac agcctgggcg cggtcggcgc gctcgatctc agccgggaag
     1561 gcattgcctg gacgcacaag ctgcagctgc gcggcgaagt gcaggatacg aacggcgttc
     1621 gcgccgtgga gcgtgtcatc gcctcgtggc agccgcgcta tgcgctcgcg cctgagggtt
     1681 acgcgtttgg cctggcccaa tatgagcatg acccggcgct cggctatgac acgcgctata
     1741 ccgccggcct gggtgccggc tggtcgctga actcgggcaa ggcgctgaag ctttcgatcg
     1801 aaggcgggcc ggcgctgcgc tacacgatcc atgccggcgc ggagcgaacg aggttcgccg
     1861 ggcgcggcac cctcgacctc ggactagcca tcgggcctcg cctcgacttc gcgcaacgcg
     1921 cgtcggtgtt ctacgaagac ggcaccagca gcggcgtgct cacctccacg ctcgacagca
     1981 agatttccga aaagctgaag ctgcgcctca cttacgagta tcgcgtcgag ggagacggtc
     2041 tgagcgggtc cacgtccagc ggctctctca gccgcgccag catcgtgtat cgcctgtagg
     2101 gtttgctccc tcaagtcgaa cgcgcaatta cctgtcctac ggggcacgcg atccggcata
     2161 gactcggcga tgcgcaggct cttcgtttcg atccctatgg cggccgtttt cgccctaagc
     2221 ccgacgcggg cgttcaccat tcgtcgcagg atatccacca ttggtctctc gcaaatttgc
     2281 ctaacgccct gttt
//
LOCUS       DASQVK010000360         3733 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_23332, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000360 DASQVK010000000
VERSION     DASQVK010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3733
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23332"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1141
                     /locus_tag="VE567_07745"
     CDS             <1..1141
                     /locus_tag="VE567_07745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HYZ48770.1"
                     /translation="VTRTQAANLAGDWGPRAAKIVADKVYPALDRQMAAIRQLRPTTR
                     AGDGAWRLPDGDAIYAVALEQMTTTKMSPDEVHRMGLAQVAELSAQLDAILKGQGLTQ
                     GTVGARLEQLNRRPDQLYPDSAEGRAALIAGLNDDVKRMSAQLPRFFKSLPTQPLEIR
                     AVPVEIQDGASNGYYRGAALDGSRPAIYFINLKDLGDWPKYTLPALSFHEGVPGHHLQ
                     ISLAQQSKEIPTIRKLGGFSAYSEGWALYAENLADEAGVYRTPLERAGLLQSYLFRAT
                     RLAVDTGIHAKRWSREQATDYMVQTTGFARPRTQREVERYCTQIGQACSYKVGHGVWS
                     RLRKEAEAKLGSRFDVKEFHQVLLDGAMPLTILEQRVRERTKAAA"
     gene            complement(1148..2929)
                     /locus_tag="VE567_07750"
     CDS             complement(1148..2929)
                     /locus_tag="VE567_07750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014075660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYZ48771.1"
                     /translation="MSAPILSYEGLGLVQGSGWLFRNLDLYIGERDRLALIGRNGAGK
                     TTLLKLLANRIDSDEGRRTIVPGTNVVLLEQEPKLSGFETLRDFAVSGDNPPAVHDVE
                     AIADQIGLDLSRSAATASGGERRRAAIARALAQQPDVLLLDEPTNHLDLAAIEWLEGW
                     LNRYTGAFVVISHDRTFLTRLTRSTLWLDRGQVRRAEIGFGGFEAWQEKIYAEEARAA
                     EKMDAKLKLELHWLQRGVTARRRRNQGRLEALNRMRAQRAAMLGPQGAAKLAVEADEV
                     RTKSVITAEHVTKRYGERTIIKDFSLRIQRGDRIGIVGANGAGKTTLLRLLTGELPPD
                     EGAVTLAKTLSGVVIDQQRSLLAPEKRVRDVLADGGDWIEVRGIKKHIQGYLKDFLFE
                     PGLADARIGTLSGGERSRLLLAREFARRSNLLVLDEPTNDLDLETLDLLQEVIADYEG
                     TVLIVSHDRDFLDRTVTVTLGLDGSGKVDIVAGGYADWERKRTPPRPADRERPKASPA
                     AQSPKAQTKLTFKDQRDYDLLPKRIEELEAAITRDEAALADPDLYGRDPKRFAALTAA
                     IEKAREEKDAAEHRWLELAEKAEALGA"
     gene            3040..3327
                     /locus_tag="VE567_07755"
     CDS             3040..3327
                     /locus_tag="VE567_07755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HYZ48772.1"
                     /translation="MTRIASAALVALALAAPAAAQRRGDQYQAFQARQSGQVLPLREI
                     EDKVLPRMRGSTYLGPEYDGGVYRLKFMRAGSVIWIDVDARTGAVIGRSGE"
     gene            3338..>3733
                     /locus_tag="VE567_07760"
     CDS             3338..>3733
                     /locus_tag="VE567_07760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYZ48773.1"
                     /translation="MRILIVEDEPSLGAQLRKTLEGAGYAVDLAVDGEEGHFLGSTES
                     YDAIVLDLGLPEIDGLTVLDRWRKEGRTMPVLVLTARDSWSDKVAGLDAGADDYLAKP
                     FQSEELIARLRALIRRASGNASSELTAGEV"
BASE COUNT          603 a         1253 c         1246 g          631 t
ORIGIN      
        1 cgtcacgcgc acacaggcgg caaatctcgc cggggactgg ggcccgcgtg cggcgaagat
       61 cgtggctgac aaggtctatc cggcgctcga ccgccagatg gccgcgatcc gccagctccg
      121 cccgaccacc cgggccggcg atggggcgtg gcgcctgccc gatggcgacg ccatctatgc
      181 cgtggcgctg gagcagatga cgacgaccaa gatgtcgccg gacgaagtgc accggatggg
      241 cttggcgcaa gtcgccgagc tcagcgcgca gctggacgcc atcctgaaag gccagggtct
      301 cacgcaaggc acggtcggcg cccggctcga acagctcaac cggcggccgg accagctcta
      361 tccagatagc gccgaagggc gggcagcgct catcgccggc ctcaacgacg acgtgaagcg
      421 catgtcggct cagctgcccc gcttcttcaa gtcgctgccg acccagcccc tcgagatccg
      481 cgccgtgccg gtcgagatcc aggacggcgc ctcgaacggc tattatcgcg gcgcggcgct
      541 cgacggctca cggccggcga tctacttcat caacctgaag gacctgggcg actggccgaa
      601 atacacgctg ccggcgctca gcttccacga aggcgtgccg gggcaccatc tgcagatcag
      661 cctggcgcag caatcgaagg agatcccgac gatccggaag ctgggcggct tttccgccta
      721 ttcggaaggc tgggcgctct atgccgagaa tcttgccgac gaggctggcg tgtatcgcac
      781 cccgttggag cgcgcgggcc tgctgcaatc ctatctgttc cgcgccaccc ggctggcggt
      841 ggacaccggc attcatgcga agcgctggag ccgggagcag gcgaccgact atatggtcca
      901 gaccacgggc tttgcgcgcc cgcgcaccca gcgcgaagtc gagcgatatt gcacgcagat
      961 cggccaagcc tgcagctaca aggtcggcca cggcgtctgg tcgcggctgc gcaaggaagc
     1021 cgaggcgaag ctcgggtccc gcttcgatgt gaaggagttc caccaagtgc tgctggacgg
     1081 cgcgatgccg ctcacgatcc tggagcagcg cgtgcgggag cgtaccaagg cggcggcata
     1141 atgccggcta ggcccccagc gcctccgctt tctcagccag ctcaagccaa cggtgctcgg
     1201 ccgcgtcctt ttcttcgcgt gccttttcga tcgcggcggt gagcgcggcg aagcgtttgg
     1261 gatcgcgccc atagaggtcg ggatcggcaa gcgcggcttc gtcgcgggtg atcgcggctt
     1321 cgagctcctc gatccgcttg ggcagcaggt cgtagtcgcg ctggtccttg aaggtcagct
     1381 tggtctgggc cttgggcgac tgcgcagcgg gcgacgcctt gggcctctcg cgatcggccg
     1441 ggcgcggcgg cgtacgcttg cgctcccaat cggcatagcc ccccgcgacg atgtcgacct
     1501 tgcccgagcc gtcgagcccc agcgtgaccg tgacggtgcg gtcgagaaag tcgcgatcgt
     1561 ggctgacgat cagcaccgtg ccttcatagt ccgcgatcac ttcctgcagc aggtcgagcg
     1621 tttcgagatc gaggtcgttg gtcggctcgt cgagcacgag caggttcgat cggcgcgcga
     1681 actcgcgcgc gagcagcagc cgcgagcgct cgccgcccga aagcgtgccg atccgtgcgt
     1741 cggccaggcc cggctcgaac aggaagtcct tcagatagcc ctggatgtgc ttcttgatgc
     1801 cgcgcacctc gatccagtcg ccgccgtccg caagcacgtc gcgcacgcgc ttttcgggcg
     1861 cgagcaggct ccgctgctgg tcgatcacga ccccgctcag cgtcttggcg agcgtcaccg
     1921 cgccttcgtc gggcggcagc tcgccggtca gcagtcgcag cagcgtggtc ttgcccgcac
     1981 cgtttgcgcc aacaatgccg atacggtcgc cgcgctggat gcgaagcgaa aaatccttga
     2041 tgatcgtgcg ctcgccatag cgcttcgtca catgctcggc agtgatcacc gacttcgtac
     2101 ggacctcgtc ggcttcgacc gcaagctttg cggcgccctg cggccccagc atggccgcgc
     2161 gctgcgcccg catccggttg agcgcttcca gcctgccttg gttgcgccgc cgccgcgcgg
     2221 tgaccccgcg ctgcagccag tgcagctcaa gcttcagctt ggcgtccatc ttctccgccg
     2281 cccgcgcttc ttcggcataa attttttcct gccacgcctc gaacccgcca aagccgatct
     2341 cggcccggcg gacctggccg cggtcgagcc acagcgtcga ccgcgtcagg cgcgtcagga
     2401 acgtgcggtc gtggctgatc acgacaaagg cgccggtata gcggttgagc cagccttcca
     2461 gccactcgat cgcggcgagg tcgagatggt tggtgggctc gtcgagcagc agcacgtccg
     2521 gctgctgcgc gagcgcccga gcgatcgccg cgcgccgccg ctcgccgccc gaggcagtgg
     2581 cggcggaacg ggaaaggtcg aggccgatct ggtccgcaat cgcctcgaca tcgtgcacgg
     2641 ccggcggatt gtcgcccgag accgcaaagt cgcgcagagt ttcgaaaccg ctgagcttcg
     2701 gctcctgctc cagcagcacc acgttggtgc cgggtacgat cgtcctccgc ccctcgtcgg
     2761 aatcgatgcg gttggcgagc agcttcagca gcgtggtctt gcccgcgcca ttgcggccga
     2821 tcagcgcaag ccggtccctc tccccgatat agaggtcgag gttgcggaac agccagccgg
     2881 atccctggac gaggcccagc ccttcatagg acagtatagg tgcagacatg ggcggccatg
     2941 tagggggcgc cgcgccgcgc gtcaccctga acccgtctta acggcggcat tcatgggcta
     3001 ttcaaagcgt tccgcctaag cgctatggcc atgttcagga tgacacgtat cgcctctgcc
     3061 gcactggttg cgctcgcgct tgccgcgccc gccgctgccc agcggcgggg ggaccagtat
     3121 caggcttttc aggcccggca gtcgggccag gtgctgcccc ttagggaaat tgaggacaag
     3181 gtgctaccgc gaatgcgcgg ctcgacctat cttggtcctg aatatgatgg tggagtctat
     3241 cgcttgaagt tcatgcgggc cggctccgtc atctggatcg atgtcgatgc ccgcaccggg
     3301 gcggtgattg gccgctcggg cgagtgaaag gacctgaatg cgaattctga tcgtcgaaga
     3361 cgaaccgagc ctcggcgccc agcttcgaaa gacgctggaa ggcgccggct atgccgtcga
     3421 tctcgccgtg gatggggagg aaggtcactt cctcggctcg accgaaagct atgacgcgat
     3481 cgtgctcgat ctcggacttc ccgagatcga cggcctgacc gtgctcgacc gctggcgcaa
     3541 ggaaggcagg accatgccgg tgctggtgct gaccgcgcgc gacagctggt cggacaaggt
     3601 ggcggggctc gacgctggcg ccgacgatta tctcgccaag cccttccagt ccgaagagct
     3661 gattgcccgg ctgcgcgcgc tgatccgccg tgcgtcgggc aatgcgagct ccgaactgac
     3721 tgcgggcgaa gtg
//
LOCUS       DASQVK010000361         3837 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_402756,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000361 DASQVK010000000
VERSION     DASQVK010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3837
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_402756"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(136..468)
                     /locus_tag="VE567_07765"
     CDS             complement(136..468)
                     /locus_tag="VE567_07765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48774.1"
                     /translation="MHNESDGAMPGEEELLRSAIARRRCVQAIYNRGEVVLAPYLLYK
                     RHDELHVAAALVMRDGAAPKASKVGVYRVKGLAELRPTTRLFTAKADLMAEVTHPADE
                     VLATALMR"
     gene            642..812
                     /locus_tag="VE567_07770"
     CDS             642..812
                     /locus_tag="VE567_07770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48775.1"
                     /translation="MFRRAAYGRHWSAGDDERLLKLADAGQSDQEIALALGRSRGSVA
                     ERRGYLRLVGAS"
     gene            complement(809..1270)
                     /locus_tag="VE567_07775"
     CDS             complement(809..1270)
                     /locus_tag="VE567_07775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48776.1"
                     /translation="MRNLIAAAFIAGLAGSAWAADCPNPQSWAKPERHVAARSSAMNF
                     ALKPGAVSQIALLPRERVTFATGRASRKGYAGLAAIDVAKAGTLHVLVGNRTYVDLVR
                     GGKPIALAAEPAHPGCPGVRKALEFAVQPGRYLVELSGSTERKVMIATSLR"
     gene            complement(1320..1877)
                     /locus_tag="VE567_07780"
     CDS             complement(1320..1877)
                     /locus_tag="VE567_07780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48777.1"
                     /translation="MADIAEGTVALTSADAAHHAEPALLGLTAEGWVYVGLTIFLLLA
                     IFVAKAPKKIADALDARIAETRRQLDEAKAIRAEAEALLARAKAQQAASADDARAIVA
                     HAQQEAADMIADAEKTAAELTVRRAKMAEDKIAAAERQAIADVRAKAAEAAVAAAEKL
                     IAERLDPEADKVLVDRTIAGLSRVH"
     gene            complement(1883..2371)
                     /locus_tag="VE567_07785"
     CDS             complement(1883..2371)
                     /locus_tag="VE567_07785"
                     /inference="COORDINATES: protein motif:HMM:NF012645.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F0 subunit B"
                     /protein_id="HYZ48778.1"
                     /translation="MPQFELANFIPQLAWLAVFFAILFGIVMLTVPKIGKVMTQREET
                     VSGDVRTAEAAKAEADRIEAEYHASVAEAREQAREALNGARAKSAKAVEERLAAATAE
                     AERKQAEAQAQLDAARERALADVQAVAAEVAADIVERLTGKRPEADAATRAVQTAALA
                     AE"
     gene            complement(2396..2620)
                     /locus_tag="VE567_07790"
     CDS             complement(2396..2620)
                     /locus_tag="VE567_07790"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008595464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HYZ48779.1"
                     /translation="MDPQAYRVIGAGLAAIGAGLAAIGVGTIFGNYLNSALRNPEADA
                     RMGGRLIFGFAVTEALGLIAAVVALALAFS"
     gene            complement(2645..3394)
                     /locus_tag="VE567_07795"
     CDS             complement(2645..3394)
                     /locus_tag="VE567_07795"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011240561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HYZ48780.1"
                     /translation="MASPMEQFEIKVLHPINAGGYDLSFTNSSLWMLVALLGVAAFLF
                     IGTARPQLVPGRAQAAVEYIYDFVRRMLDENVGPEGRRFAPLIFSVFIFVLACNLLGL
                     IPWVGAFTPTSHVAVTLGLAVLVFGIVVIVGFARHGLHFFSLFWPKKTFFPLALFVAF
                     IEFLSFLSRPFTLAIRLFANMTAGHVLLKVFGTFVVALGSFGALPYVFGVLPLAVNVA
                     LSALEVLIAVVQAYVFALLASIYLNDAINLH"
     gene            complement(3398..3703)
                     /locus_tag="VE567_07800"
     CDS             complement(3398..3703)
                     /locus_tag="VE567_07800"
                     /inference="COORDINATES: protein motif:HMM:NF021073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HYZ48781.1"
                     /translation="MADDRNKDELDRRIAAAKAGTERGATDAEGRAESRGWAVGIEFV
                     GAVLVGGFIGWLFDHYAGMGTAPWGMIVLLVLGFAAGTRRAMKTSQAFDAKPGDDGK"
BASE COUNT          634 a         1301 c         1267 g          635 t
ORIGIN      
        1 cgtcgatgtt cgagaaatcg aggcccggat cgacgccgac gtcgccaccg caagtgtccg
       61 cgccgtgctc agcgcggcca atgcttcggc gtccgcctga gcctttccct ctcccggtcg
      121 ggagaggggg ctggcctacc gcattagcgc ggtcgcgagc acttcgtcgg ctgggtgcgt
      181 gacttcggcc atcagatcgg ccttggccgt gaagagccgg gtcgtcggcc gcagctccgc
      241 caggcccttg acccgataga cgccgacctt ggaggccttg ggcgcagccc catcgcgcat
      301 caccagcgcc gccgccacat gcagctcgtc atggcgcttg tagagaagat agggcgccag
      361 caccacttcg ccccgattgt atatcgcctg tacgcagcgc ctgcgcgcga tcgcggagcg
      421 cagaagctcc tcctcgcccg gcatcgcacc gtcactttca ttgtgcactt gctaactcca
      481 cggttggtcg caaagctacg ccttttcagg agcgattggc aacgccccgt aacaattttg
      541 cgcttgcagc agagaaaccg aatcatttgc gctgcgttgc agcagggcga ttgcggtttc
      601 ggcgttccgt ggtggggcgc ctgtcgcagg gggagcgagt catgttcagg cgtgcggctt
      661 atggccggca ttggtcggcg ggagacgatg agcggctgtt gaagctcgca gatgcgggcc
      721 agtcggatca ggagatcgca ctcgccctcg gccgctcgcg cggctccgtc gccgaacgcc
      781 gcgggtatct gcgcctggtc ggcgcgagct agcgcaggct ggtcgcgatc atgaccttgc
      841 gctcggtcga acccgacagc tcgaccaggt agcgcccggg ctgaaccgcg aattcgagcg
      901 ctttccgaac gccggggcag cccgggtgcg ccggctccgc cgccagcgca atcggctttc
      961 cgccgcgcac caggtcgaca taagtgcgat tgccgacgag cacgtgcagc gtcccggcct
     1021 tcgccacatc gatcgccgca agtccggcat agcccttgcg gctcgcgcgc ccggtcgcga
     1081 aggtcacgcg ctcgcgcggc agcagcgcga tctggcttac ggcgcccggt ttcagtgcga
     1141 aattcatcgc tgacgagcgc gccgccacat gtcgttcggg cttggcccag ctttgcgggt
     1201 tggggcagtc ggccgcccag gccgagcccg ccagccccgc gatgaatgcg gctgcgatca
     1261 gattgcgcat cgatgctccc cccttggtac ggagggagcg catagcggct cgatcttgtt
     1321 tagtgaaccc ggctgaggcc ggcgatcgtg cggtcgacca gcaccttgtc ggcctccggg
     1381 tcgagccgtt cggcgatcag tttttccgcc gccgcgactg ccgcttccgc ggccttggcg
     1441 cggacatcgg cgatcgcctg acgctcggcg gcggcgatct tgtcttcggc catcttggcg
     1501 cgccgcacgg tcagctccgc cgccgtcttc tcggcatcgg cgatcatgtc ggctgcttcc
     1561 tgctgggcgt gcgcgacgat cgcccgcgca tcgtccgcgc tcgcggcctg ctgcgccttg
     1621 gccctggcaa gcagcgcctc ggcctcggcg cgaatcgcct tggcttcgtc gagctgccgc
     1681 cgcgtctccg cgatgcgggc gtcgagcgcg tcggcgatct tcttcggtgc cttggcgacg
     1741 aaaatcgcga gcaggaggaa gatcgtcagg ccgacataga cccagccttc ggcggtcagc
     1801 cccagcaaag cgggctcggc gtggtgcgcg gcatccgctg aggtcagcgc tacagtgcct
     1861 tccgcgatat cggccattca acttactccg ctgcgagcgc ggcggtctga accgctcgcg
     1921 tcgctgcatc ggcctcgggc cgcttgccgg tcagccgctc gacgatgtcc gcagccactt
     1981 cggccgcgac cgcctgcaca tcggccagcg cccgctcgcg cgccgcgtcg agctgcgcct
     2041 gggcctcggc ctgcttgcgc tcggcctcgg cagtggcggc ggcgagccgt tcctcgaccg
     2101 ccttggcgct cttggcgcgt gcgccgttga gcgcctcgcg cgcctgctcc cgcgcctcag
     2161 cgacgctggc gtgatactcg gcctcgatcc ggtccgcttc ggccttggcg gcttcggcgg
     2221 tccggacgtc gcccgacacc gtctcctcgc gctgcgtcat caccttgccg atcttgggca
     2281 cggtaagcat cacgatcccg aacaggatcg cgaagaagac cgccagccag gccagctggg
     2341 ggatgaaatt ggcgagctcg aactgaggca tcgggctatg gccctacgct ggggattaag
     2401 agaaagcgag cgcgagcgcg acgacggccg cgatcaggcc gagcgcctcg gtcacggcga
     2461 agccgaagat cagccggccg cccatgcggg catcggcttc cgggttgcgg agcgcgctgt
     2521 tcagataatt gccgaagatg gtgcccacgc cgatcgcggc gaggcccgca ccgatggcgg
     2581 cgagaccggc gccgataacc cgataagctt gaggatccat gagatttccc ttctgttgaa
     2641 ccggttagtg gagattgatg gcgtcgttca ggtagatcga ggcgagcagc gcgaacacat
     2701 aggcctgcac caccgcgatc agcacttcga gcgcggagag cgcgacgttc accgcgagcg
     2761 gcaggactcc gaacacataa ggcagcgcgc cgaacgaacc gagcgcgaca acgaatgtcc
     2821 cgaacacctt caggagcacg tgccccgcgg tcatgttcgc gaacagacga atggcgagcg
     2881 tgaacggccg gctgaggaag ctcagaaact cgatgaaagc cacgaacagc gcgagcggga
     2941 agaacgtctt tttcggccag aacaggctga agaagtgcag gccgtgccgc gcgaagccga
     3001 cgatcacgac gatcccgaac accagcaccg ccaggcccag ggtcaccgcg acatggctgg
     3061 tcggcgtgaa tgcgcctacc caggggatca ggcccagcag gttgcaggcc agcacgaaaa
     3121 tgaacacgct gaagatcaac ggcgcgaagc ggcggccttc ggggcccaca ttctcgtcga
     3181 gcattcgcct gacgaaatca tagatatatt cgaccgcggc ctgggcgcgg ccagggacca
     3241 gctgcggacg tgcggtgccg atgaacagga aggccgccac gcccagcagc gcgaccagca
     3301 tccaaagcga tgagttggtg aaggagagat catagccgcc cgcgttgatc gggtgcagca
     3361 ccttgatctc gaattgctcc atcgggctgg ccatgtctta tttcccgtcg tcgcccggct
     3421 tggcgtcaaa tgcttgcgag gtcttcatgg cgcgccgcgt gcctgcggcg aagccgagca
     3481 cgagcaggac gatcatgccc caaggcgcgg tccccatgcc ggcataatga tcgaacagcc
     3541 agccgatgaa gccgcccacc agcaccgcac cgacgaattc gatgccgacg gcccagccgc
     3601 ggctttccgc acgcccttcg gcgtcggtgg caccgcgctc ggtccccgcc ttcgccgcgg
     3661 cgatgcgccg atcaagctcg tccttgttgc gatcgtccgc caagaaaaca ccctgataag
     3721 gaaacgccgc cggacacggg gtcgcggcga cgagtagcgc ggcgtccccg cctgcgcggc
     3781 gtccgattag gacgcgagtc gaggggtgtc aactcttccg ggggctaagg gcaattc
//
LOCUS       DASQVK010000362         3118 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_402824,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000362 DASQVK010000000
VERSION     DASQVK010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3118
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_402824"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..548)
                     /locus_tag="VE567_07805"
     CDS             complement(<1..548)
                     /locus_tag="VE567_07805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012816848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrmH family RNA methyltransferase"
                     /protein_id="HYZ48782.1"
                     /translation="MAKQITGFSNPLVKRVRSLRDKKHRKREGLFLAEGLRILTEARE
                     AGALPEMLFFAPGGAGHALAQELIAETERAGGDVIETVPDILSKLSGKDNAQTLVGVY
                     RDRLTPLEDIDRGAAGIWIVAQALRDPGNLGTMLRTSDAVSGGGLILVDDCVDPFSVE
                     AVRASMGALFTQRIAATRWEAFV"
     gene            complement(614..886)
                     /locus_tag="VE567_07810"
     CDS             complement(614..886)
                     /locus_tag="VE567_07810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020818371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HYZ48783.1"
                     /translation="MNDVSRTVLITNKRGLHARASAKFVTMASGLPAKVEVRKDGASV
                     TGTSIMGLMMLGAAMGEEIEICASGEGAEQAVAQLAELVESKFGED"
     gene            complement(883..1287)
                     /locus_tag="VE567_07815"
     CDS             complement(883..1287)
                     /locus_tag="VE567_07815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010124359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HYZ48784.1"
                     /translation="MIGLVLVTHGRLAAEFVVAMEHVVGPQSAVEAICIGPDDDMEMR
                     RADIAKAIRGVDSGRGVIVLTDLFGGTPSNLAISLMQPGKTEVIAGINLPMLIRLEGA
                     RRTMNVKDAVAAAREAGRKYISVASEVLGEAA"
     gene            complement(1305..2225)
                     /gene="rapZ"
                     /locus_tag="VE567_07820"
     CDS             complement(1305..2225)
                     /gene="rapZ"
                     /locus_tag="VE567_07820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HYZ48785.1"
                     /translation="MTDRTKPERLLLVTGMSGAGKSTALDTLEDLGWETVDNLPLTLL
                     DRLLETPPAEGSARDNRPLAFGIDSRTRGFDAGGVVRRVARLRERGDFEVAALFLDCA
                     GAELERRYDETRRPHPLALDRPAGDGIARERELLAPLRDGADYLIDTTSLSRADLQHE
                     LRTRFAEEGGRETVVSVMSFGFARGLPRNADLVFDMRFLRNPHWDRELKPLTGLDESV
                     GDYIAADPAYEAAIAQIEALLLTLLPRYAAESKAYVTIAFGCTGGRHRSVHVAERVAR
                     RLREAGFSPTVAHRDLATSPLDAVEEPRAR"
     gene            complement(2222..2635)
                     /locus_tag="VE567_07825"
     CDS             complement(2222..2635)
                     /locus_tag="VE567_07825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr kinase/phosphatase C-terminal
                     domain-containing protein"
                     /protein_id="HYZ48786.1"
                     /translation="MLIHATCVSIGGRAVLITGPSGGGKSDLALRLIDRGALLVSDDQ
                     VKLSADGGVLYASAPATIGGRMEIRGIGIVEAPHAGPTPVALRVDLMLPVERMPEPAS
                     CDYCGIDVPLAALHPFEASAPLKVERALDRWGLAL"
     gene            complement(2635..>3118)
                     /locus_tag="VE567_07830"
     CDS             complement(2635..>3118)
                     /locus_tag="VE567_07830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016744506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYZ48787.1"
                     /translation="RLERIDLGRTIEALLRAREMRGPNERGVQVAFARPRVNTAVVNG
                     DEFRLVRIIENLLDNAVSFSPDNGLVQITATRLGDEVVVRVEDQGPGVPPELKDSIFR
                     RFTSVRPIADPGHSGLGLAIARAIAEGHNGKLEVETRDQRPSGAAFILRLPAAPQAAA
                     "
BASE COUNT          505 a         1098 c         1019 g          496 t
ORIGIN      
        1 acgaacgcct cccaacgcgt ggcggcgatc cgctgcgtga agagcgcgcc catgctcgcc
       61 cgcaccgctt cgaccgaaaa cgggtccacg caatcgtcga cgaggatcag cccgccgccg
      121 ctgaccgcgt cgctggtgcg cagcatcgtc ccgagattgc cggggtcccg cagcgcctgg
      181 gcgacgatcc agatgccggc cgcgccgcgg tcgatgtctt ccagcggcgt cagccggtcg
      241 cggtacacgc cgaccagggt ctgcgcattg tccttgccgg acagcttgga gagaatatcg
      301 ggcacggtct cgatcacgtc gccgcccgcg cgctcggtct cagcgatcag ctcctgcgcg
      361 agcgcgtggc ccgccccgcc gggcgcgaag aacagcatct cgggcagcgc gccggcctcg
      421 cgcgcttcgg tcaggatgcg cagcccctcg gccaggaaca ggccctcgcg cttgcgatgc
      481 ttcttgtcgc gcaggctccg cacgcgcttg accagcgggt tggagaagcc ggtgatctgt
      541 ttggccatga agcgccgatc gcaaaaggaa aaagaggagg cagggcgccc gaaatcaagg
      601 gcggggatta ggcttagtcc tccccgaact tgctttcgac cagctccgcc agctgggcga
      661 ccgcttgctc ggcgccctcg ccgctggcgc aaatctcgat ttcctcgccc atcgccgcgc
      721 cgagcatcat caggcccatg atcgacgtgc cggtgacgct cgccccgtct ttgcgcactt
      781 cgaccttggc cggtagcccg ctcgccatcg tcacgaattt ggcgctggcg cgcgcgtgca
      841 gcccgcgctt gttggtgatg aggacggttc gcgacacatc gttcatgcgg cctcgccaag
      901 tacttccgaa gcaactgaga tatatttgcg gcccgcctcg cgcgcggcgg cgaccgcgtc
      961 cttcacgttc atcgtccgcc gcgcgccttc aagccggatc agcatcggca ggttgatgcc
     1021 ggcaatcacc tcggtcttgc ccggctgcat cagcgaaatg gcgaggttcg acggcgtgcc
     1081 gccgaacagg tcggtcagca cgatcacgcc gcgccccgaa tcgacgccgc gaatcgcctt
     1141 ggcgatatcg gcgcgacgca tttccatatc gtcgtccggg ccgatgcaga tcgcctcgac
     1201 cgcggattga ggccccacga catgctccat cgcgacgacg aattccgcgg cgagccgtcc
     1261 atgggtcacc agcacaagtc cgatcatctc gttctcaaaa tccttcagcg agcccggggc
     1321 tcctcgaccg cgtccagagg cgaggtcgca aggtcacgat gcgcgaccgt gggcgaaaat
     1381 ccagcctcgc gcaaccgccg agcgactcgc tccgccacgt gaacggatcg atgtctcccc
     1441 ccggtacagc cgaaagcgat cgtgacatag gccttgcttt cggccgcgta gcgaggaagc
     1501 agcgtcagca acaacgcttc gatctgggcg attgccgcct cataggcggg gtcggcggcg
     1561 atatagtccc cgacgctttc gtccaggccg gtcaacggct tcagctcccg gtcccaatgc
     1621 gggttgcgca ggaaacgcat gtcgaacacc agatccgcgt tgcgcggcag tccgcgcgcg
     1681 aaaccgaacg acatgaccga cacgacggtt tcgcgcccgc cttcctcggc gaagcgcgtg
     1741 cggagctcgt gctgcaggtc ggcgcggctg aggctggtgg tgtcgatgag gtaatcggcg
     1801 ccgtcgcgca gcggcgccag cagctcgcgc tcgcgtgcga tgccgtcgcc ggccggacgg
     1861 tcgagcgcca gcggatgcgg gcgtcgcgtc tcgtcatagc gccgttcgag ctcggccccg
     1921 gcgcaatcga ggaacagcgc ggccacctcg aaatcgcccc gctcccgcag gcgggcgaca
     1981 cggcgcacga ccccgccggc atcgaaacca cgcgtgcggc tgtcgatccc gaacgcgagc
     2041 ggacgattgt cgcgcgccga accttccgcc ggcggggtct ccagcaatcg gtcgagcagc
     2101 gtcaagggaa ggttgtcgac cgtctcccaa cccagatcct ccagcgtgtc gagcgcagtc
     2161 gatttgcccg cgccggacat gccggtgacg agcagcagcc gttcgggttt ggttcgatcg
     2221 gtcacagtgc cagtccccag cggtcgagcg cccgctcgac ctttagcggc gccgatgcct
     2281 cgaaagggtg cagtgcggca agcggaacgt cgatgccgca ataatcgcag ctcgccggct
     2341 cgggcatccg ctcgacgggg agcatcaggt cgacgcgcag cgccaccggc gtcgggccgg
     2401 catgaggcgc ctcgacgatt ccgattccgc ggatttccat tctgccgccg atcgtggcgg
     2461 gggcggaagc gtaaagcacg cctccgtccg ccgagagctt cacttgatcg tcgctgacca
     2521 gcagcgcccc gcgatcgatc aggcgcaggg ccaggtccga ttttccgccg cccgacggcc
     2581 cggtgatcag cacagcgcgc ccgccgatcg aaacgcaggt tgcgtggatc agcatcaggc
     2641 cgccgcctgg ggcgccgccg gcaggcgcag gatgaaagcg gcgccgctcg gccgctggtc
     2701 ccgggtttcg acctccagct tgccgttatg cccttcggcg atggcgcgcg cgatcgcaag
     2761 ccccaggccg gaatggcccg ggtcggcgat cggccgcacg ctcgtgaagc ggcggaagat
     2821 cgagtccttc agttcgggcg gcacgcccgg cccttggtcc tccacgcgca cgaccacttc
     2881 gtcgccaagg cgcgtcgccg tgatttgcac cagcccattg tcgggcgaga aggagacggc
     2941 attgtcgagc aggttctcga tgatccgcac cagcctgaac tcgtcgccat tcaccaccgc
     3001 ggtgttcacg cgcgggcggg cgaaggcgac ctgaacgccg cgctcattgg gtccgcgcat
     3061 ctcgcgtgcg cgcagcaggg cttcgatcgt ccggccaaga tcgatccgtt cgagccgt
//
LOCUS       DASQVK010000363         4338 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_465913,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000363 DASQVK010000000
VERSION     DASQVK010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4338
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_465913"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..791)
                     /gene="hemW"
                     /locus_tag="VE567_07835"
     CDS             complement(<1..791)
                     /gene="hemW"
                     /locus_tag="VE567_07835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HYZ48788.1"
                     /translation="MPGSSPLALYIHWPFCVSKCPYCDFNSHVREQIDQAQWRDALLA
                     DLAHEATLTPGRPLSSIFFGGGTPSLMPPATVAALIEAAERLWGFAPDIEITLEANPS
                     SVEAARFADLARAGVNRVSLGLQALDDSALAFLGRAHTLSEGLSALDVAQSVFARVSF
                     DLIYARPGQSLADWQMELERALSFGTGHLSLYQLTIEPGTRFAALAAKGELPEIDPDH
                     AATLFELTRAVTAAAGLPAYEVSNHARQGEESRHNLTYWRYGDYLG"
     gene            complement(791..1405)
                     /gene="rdgB"
                     /locus_tag="VE567_07840"
     CDS             complement(791..1405)
                     /gene="rdgB"
                     /locus_tag="VE567_07840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HYZ48789.1"
                     /translation="MNLLAARKLEPGRLVVASHNQGKVREINALLGPFGIEPASAAEL
                     GLPEPAETGTTFAANAELKARLAADFSGIPAIADDSGLCVEALGLEPGIFSARWAGPD
                     RDFDLAMRLVEEHLERAGPEAGRNAFFMCALAVAWPDGHIETFEGRVDGTLVWPPRGD
                     KGFGYDPMFLPLGYTETFGEMDPDAKHRISHRAVAFEKLVAALL"
     gene            complement(1402..2112)
                     /gene="rph"
                     /locus_tag="VE567_07845"
     CDS             complement(1402..2112)
                     /gene="rph"
                     /locus_tag="VE567_07845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011540569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004549 - tRNA-specific ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HYZ48790.1"
                     /translation="MTTRPSGRAPDQMRAITIEPHYTRHAEGSCLIGFGDTKVLVTAS
                     LEEKVPPFLRGKGEGWVTAEYGMLPRATHTRGNREAAKGKQSGRTQEIQRLIGRSLRA
                     VVDLKALGERQITIDCDVIQADGGTRTASISGAWVALRMAIDKLQLPVDPIRAQVAAV
                     SCGIYEGTPVLDLDYDEDSAAHCDGNFVLTGSGDIVEAQVTAEGACYNEEGLLRLLRL
                     ARIGCTEIFAAQAKAVGK"
     gene            2195..3241
                     /gene="hrcA"
                     /locus_tag="VE567_07850"
     CDS             2195..3241
                     /gene="hrcA"
                     /locus_tag="VE567_07850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcriptional repressor HrcA"
                     /protein_id="HYZ48791.1"
                     /translation="MMTPAISELSDRAREVFRVVVESYLGTGAPIGSRTISKIGGFNL
                     SPASIRNVMQDLEEAGLLSAPHISAGRMPTDQGLRLFVDAIMQASEPSPEERRMIERQ
                     LAGDGGRIENALSAATAALSDLSACAGVVMVPKREPRLRQIGFVPLSRDQALAVLVGQ
                     DGSIENRVIDLPPGVSPSTLIEAANFVSDQLTGLTLAQARERLRLEIGRGQRALDAAS
                     RELVERGLAIWTEDSGRRPVLIVRGQSHLLDAAAAADLDRVRRLLEELEEAQEIARLL
                     DSAADGAATKIFIGSENKLFALSGSSVIAAPYRGSDERVVGVVGVIGPTRLNYARVVP
                     MVDFTAQTLSRLMG"
     gene            3238..3792
                     /gene="grpE"
                     /locus_tag="VE567_07855"
     CDS             3238..3792
                     /gene="grpE"
                     /locus_tag="VE567_07855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HYZ48792.1"
                     /translation="MMNETENQTVREETAAEAPELKEHDRMQALEAELAEAKAAVLYA
                     QAETQNVRRRLEKDAQDARAYAATAFARDMLSVADNLERALQAIPAELREDEKFKALV
                     AGLDATGRELAGVFERNGITRISALGEKLDPNRHQAMLEMPTADAEPGTIIQEMQPGY
                     MIRDRLLRPALVGVAKAAEEISAS"
     gene            3865..4245
                     /gene="secG"
                     /locus_tag="VE567_07860"
     CDS             3865..4245
                     /gene="secG"
                     /locus_tag="VE567_07860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004211256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HYZ48793.1"
                     /translation="MFTFLLVLQALIAAALVTVILMQRSEGGGLTGGGSPSGLMSARG
                     AADFLTRATAILATMFVLCCIALATLATMNSKTGKIDASATVGAIQPPPTATPTPVDP
                     LAAAAGQAAGNGANASNGAQPAAK"
BASE COUNT          736 a         1421 c         1507 g          674 t
ORIGIN      
        1 cccagataat cgccataacg ccagtaagtg agattgtggc ggctttcctc gccctggcgg
       61 gcgtggttcg agacttcata ggcgggcaag cccgctgccg cggtcactgc gcgagtgagc
      121 tcgaacaggg tggcggcgtg atcggggtcg atctccggca gctcgccctt ggcggcgagc
      181 gcggcgaagc gcgtgcccgg ctcgatggtg agctgataaa gcgagagatg gccggtgccg
      241 aagctcagcg cgcgctcgag ctccatctgc cagtcggcga gcgactggcc gggccgggcg
      301 taaatcaggt cgaagctgac gcgggcgaac accgattgcg cgacgtcgag cgcggagagg
      361 ccctcgctca gcgtatgggc gcggccgaga aaggcgagcg ccgaatcatc gagcgcctgg
      421 agccccaacg agacgcggtt cacgccggct cgcgcgagat cggcgaagcg cgcggcctcg
      481 actgaggacg ggttggcctc cagcgtgatc tcaatgtccg gcgcgaagcc ccagagccgc
      541 tcggccgcct cgatcaacgc ggcgacggtc gcaggcggca tcagcgaagg cgtgccgccg
      601 ccgaagaaga tcgaggaaag cgggcggccc ggcgttagcg tcgcttcatg ggcgaggtcg
      661 gcgagcagcg cgtcgcgcca ctgggcttgg tcgatctgct cccggacgtg cgagttgaaa
      721 tcgcaataag ggcatttgga gacgcagaac ggccagtgga tgtagagagc gaggggggaa
      781 ctccccggca tcacaaaaga gctgcaacca gcttctcgaa ggccacggcg cggtggctga
      841 tgcggtgctt ggcgtccggg tccatctcgc cgaaagtctc ggtatagccc aggggcaaga
      901 acatcggatc atagccgaag cccttgtctc cgcgcggcgg ccagacgagc gtgccatcca
      961 cccggccttc gaaggtttcg atgtgaccgt caggccaggc gacggcgagg gcgcacatga
     1021 agaaggcgtt gcgcccggct tcgggtccgg cgcgctccag atgctcctcg accagccgca
     1081 tggccaggtc gaaatcgcga tcgggaccgg cccaacgcgc tgagaaaatg ccgggctcca
     1141 ggcccagcgc ttcgacgcac aggccgctat cgtcggcaat ggcgggaatg cccgagaagt
     1201 cggcggcgag ccgggcctta agctccgcat tcgccgcgaa cgtcgtgccc gtctcggccg
     1261 gctcgggcag gcccagctcg gcggccgagg ccggctcgat cccgaacggc ccgagcagcg
     1321 cgttgatctc gcgcaccttg ccttgattgt ggctggcgac caccagccgg cccggttcga
     1381 gcttgcgggc ggccaggaga ttcacttgcc cacggccttg gcctgcgccg cgaaaatttc
     1441 cgtacagccg attcgggcga ggcgcagcag ccgcagcagc ccttcctcat tgtagcacgc
     1501 gccttcggcc gtcacctggg cctccacgat gtcgccgctg ccggtcagca cgaaattgcc
     1561 gtcgcaatgc gccgccgagt cctcgtcata atcgaggtca agcaccgggg ttccttcata
     1621 aatgccgcag ctgaccgccg cgacctgcgc gcggatcggg tcgaccggca gctgcagctt
     1681 atcgatcgcc atgcgcagcg ccacccaggc gcccgagatc gacgcagtgc gcgttccgcc
     1741 gtccgcctgg ataacgtcgc agtcgatggt gatctggcgt tcgcccagcg ccttcaggtc
     1801 gacgacggcg cggagcgagc ggccgatcag gcgctggatt tcctgggtac ggccggattg
     1861 cttgcccttg gccgcctcgc gattgccgcg ggtatgggtg gcgcggggca gcatgccata
     1921 ttccgcggtc acccagcctt cgcccttgcc gcgcaggaag ggcgggacct tttcctcaag
     1981 gctcgcggtc accagcactt tggtgtcgcc aaagccgatc aggcacgacc cttcggcgtg
     2041 gcgggtgtaa tggggctcga tggtgatggc gcgcatctga tcgggcgcgc ggccggaggg
     2101 gcgtgtggtc atgcgggccg ccttcggggt tcgcggacgc gggatcaagt ccggggtgac
     2161 gaaaaagaag agtttcccta catcgtcgcg tgcaatgatg acgcccgcga tcagcgaatt
     2221 gtccgaccgc gcgcgcgaag tgtttcgcgt tgtggtcgaa tcatatctcg gcaccggcgc
     2281 gccgatcggg tcgcgcacga tctccaaaat cggcgggttc aacctctccc ccgcctcgat
     2341 tcgcaacgtg atgcaggatc tggaggaagc cgggttgctg tccgcgccgc acatctcggc
     2401 cgggcggatg ccgacggacc agggcctcag gcttttcgtc gacgcgatca tgcaggcgtc
     2461 ggagccatcg cctgaggagc ggcggatgat cgagcggcaa ttggccggcg atggcgggcg
     2521 aatcgagaat gcgctgtcgg cggccacggc ggcgctgtcc gacctctccg cctgcgcggg
     2581 cgtggtgatg gtgcccaagc gcgagccgcg gctgcgccag atcggcttcg tgccattgtc
     2641 gcgcgaccag gcgctcgcgg tgctggtggg ccaggacgga agtatcgaga accgtgtgat
     2701 cgacctcccg cccggcgtct ccccctcgac cttgatcgaa gcggcaaatt tcgtgtccga
     2761 ccagcttacg ggcctcactc tggcccaggc gcgcgagcgg ctgcggttgg agatcgggcg
     2821 cggccagcgg gcgctcgacg ccgcctcgcg cgagctggtc gagcgcggac tcgccatctg
     2881 gacggaagat tcgggccggc ggccggtgct gatcgtgcgc ggccagtcgc atctgctcga
     2941 cgcggccgcg gccgccgatc tcgaccgggt gcgccggctc ctcgaagaac tcgaggaagc
     3001 gcaggaaatc gcgcggctgc tcgacagcgc tgccgacggc gccgcgacca agatcttcat
     3061 cggctccgaa aacaagctgt tcgcgctttc gggctcctcc gtgatcgctg cgccttaccg
     3121 cgggagcgat gaacgcgtag tcggcgttgt cggggtgatc ggaccaacgc ggttgaatta
     3181 tgcgcgcgtg gtcccaatgg tggatttcac ggcacaaacg ctatcgagat tgatgggatg
     3241 atgaacgaga ccgaaaacca gacggttcgc gaagaaacgg ccgccgaggc gccggaactg
     3301 aaagaacacg accggatgca ggcgctggaa gcggagctgg ccgaggccaa ggccgcggtg
     3361 ctctatgccc aggcggagac gcagaatgtg cgccggcggc tggagaagga cgcgcaggac
     3421 gcgcgggcct atgccgcgac cgcctttgcg cgcgacatgc tctcggtggc cgacaatctg
     3481 gagcgcgcgc tccaggcgat cccggccgag ttgcgcgagg acgaaaagtt caaggccctg
     3541 gtagcgggcc tcgacgccac gggccgcgag ctcgccggtg tgttcgagcg caacgggatt
     3601 acgcggataa gcgcgctggg cgaaaagctt gaccccaatc gccaccaggc aatgctcgaa
     3661 atgccgaccg cggacgcgga gcccggcacg atcatccagg aaatgcagcc cggctatatg
     3721 atccgcgacc ggctgctccg tccggcgctc gtcggcgtgg cgaaagcggc ggaagagatc
     3781 tccgcatcct gaccctccat gccggggtga cggaataggg aaacaacgct aaaggccccg
     3841 gccttccgaa gcagaaagtc agccatgttc accttcctcc tcgttctcca ggcgctgatc
     3901 gcggcggcgc tcgtgaccgt catcctgatg cagcggtcgg aaggcggcgg gctgaccggg
     3961 ggcggcagcc cgtccggcct gatgtccgcg cgtggcgcgg cggacttcct gacccgcgcg
     4021 accgcgatcc tggcgaccat gttcgtgctg tgctgcatcg cgctcgcgac gctcgccacg
     4081 atgaactcca agaccggcaa gatcgacgcc tccgccacgg tcggcgcgat ccagccccca
     4141 ccgacggcga ccccgacgcc ggtcgatcct ctcgctgcgg cggccggcca ggccgccggc
     4201 aatggtgcca acgccagcaa cggagcgcag ccggccgcca aataaagccg gtcccgcccg
     4261 caatcggttg gggaatatcc cttgccccta cccgatttcc gcggctaagc ctcgactccc
     4321 atggcgcggt atattttt
//
LOCUS       DASQVK010000364         4562 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_339646,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000364 DASQVK010000000
VERSION     DASQVK010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4562
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339646"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1840
                     /locus_tag="VE567_07865"
     CDS             <1..1840
                     /locus_tag="VE567_07865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017181680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0035673 - oligopeptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006857 - oligopeptide transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HYZ48794.1"
                     /translation="LRVGLTFATSIPAAVISMALLRAFANGTILENNIVQTVASAAGT
                     LAAICFVLPGLVMVGAWHDFPFWTTALITFLGGFLGVMFSIPLRRALVVDTALPYPEG
                     VAAAEVLKVGESGNKAGLRIITTGAVASASFALLAAMRVAVAEAATFFRIGGSATGIS
                     AGLSFALLGAGHLVGLSVGLAIGIGILIGWAVAVPILTAGIPGPAETVALTVWGDQVR
                     FFGAGVIGVASIWTLLSILGPIVGGVRSAIAASAARRGDGGLAPIQERDLPIGLVALA
                     SLGALALIGLLLAAQLGGIGNAPLLIGGSLAFVVLAGAFIAAVCGYMAGLIGASNSPI
                     SGVGILSIIAAALLIGAVAGGSGDSRPLVVYALTVTAVVFGVATISNDNLQDLKTGQL
                     IGATPWRQQVALIFGVFFGSLVIPPVLSLLNQAYGFAGAPGAGPNALPAPQAALISAL
                     AKGVLGGTLDWRMIGYGAMAGVVIVGIDLALRGTSGRRCPPLAVGLGIYLPMQTSLLV
                     VVGAIAGWVYERWARRQRDPEGAERMGVLLATGLIVGESLFGVALAGLVVASGSGAPL
                     GLMPESFAPTALILAPLLFAALAAWLYRRTASAAAAIAGDALVGQP"
     gene            complement(1793..2239)
                     /gene="queF"
                     /locus_tag="VE567_07870"
     CDS             complement(1793..2239)
                     /gene="queF"
                     /locus_tag="VE567_07870"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014078193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033739 - preQ1 synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preQ(1) synthase"
                     /protein_id="HYZ48795.1"
                     /translation="MNITHLGQPSALPARPEEAVLDYVPNPRPGRPYLVRFTAPEFTS
                     LCPVTGQPDFAHLVIDYAPGDTIVESKSLKLFLGAFRNHAAFHEDCTVGIAERLFAEM
                     KPLWLRIGGYWYPRGGMPIDVFWQSGEPPAGLWLPDQGVPGYRGRG"
     gene            2349..3848
                     /locus_tag="VE567_07875"
     CDS             2349..3848
                     /locus_tag="VE567_07875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase S10"
                     /protein_id="HYZ48796.1"
                     /translation="MTKKFLLAAAALLAAPALAQDKPKDEPKVDKAAEIPPPQLVTIK
                     RSGTFGGQRINYTATAGEMYLKGDDGTPKAAINYYSYVKEPRDPSRPVTFLFNGGPGS
                     GSVWLHMGAFGPKRVAIPSDARDDGAPPYPILDNPDCLLDVTDIVFIDPVGTGFSHAL
                     GKTDPKDYWGVTKDAKSVAQVIRLWLNDNGRWNSPKFLGGESYGTTRSAAVAHELEGA
                     YNDVALNGIILVSTILDFGAQAEVEGNDMPYIIAVPSMAAVAWYHNKVAERPAAVDQF
                     VAEARAFAAGPYATALMKGQALQGEERATIRRQLARFTGLSETFLERADLRPSPGRFW
                     KELLRDQGLVVGRLDSRYTGRDRDNAGEQIDNDPSFYGIDGGYTAAINSYLRGEFGWK
                     TDRSYVTIGSVGPWDWDLGRDDAAYYKSVAPYIGKALRENSGLRIFVGQGYYDFATPF
                     FGAEYALSRTGFPQDRIQFHYYQAGHMMYVRDEDRHKLAEDVKAFIRSR"
     gene            3926..>4562
                     /locus_tag="VE567_07880"
     CDS             3926..>4562
                     /locus_tag="VE567_07880"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010162041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HYZ48797.1"
                     /translation="MDALVSTDWLEKELGSSDLRVVDATWLMPGEGDAAAAYEQAHIP
                     GAVFMDLAELADTSTSVPNMLPPAEKFASRMQSLGLGDGSRIVVYDQSPYKTAARAWW
                     MLRTFGAHDVAILDGGWAKWRAEARAVESGKPHLRHRHFTAWHDPKGLRTLEQMKANI
                     GTRAEQVLDARSPDRFAGQAAERAGVQPGHIPGSKNLRYDRLFNPDGTYKRG"
BASE COUNT          710 a         1474 c         1543 g          835 t
ORIGIN      
        1 cctgcgcgtc ggcctgacgt tcgcgacttc aatccctgct gctgtgatct cgatggcgct
       61 gctccgcgcc ttcgcgaacg gcacgatcct tgagaacaat atcgtccaga ccgtcgcttc
      121 ggctgccggg acattggcag cgatctgctt cgtgttgccc ggactggtga tggtcggggc
      181 ctggcacgat ttccccttct ggacgacggc gctgatcacg ttcctcggtg gctttctggg
      241 cgtgatgttc tcgattccgc tgcgacgcgc gctcgtcgtc gacacggccc tgccctatcc
      301 cgaaggggtc gccgccgccg aagtgctgaa agtcggcgaa agcggcaaca aggcggggct
      361 gaggatcatc accaccggcg ctgtcgcttc ggcgtccttc gcgctgctcg cagccatgcg
      421 cgttgcggtc gccgaggcgg caacgttttt ccggatcggc ggcagcgcga cgggcatttc
      481 ggcagggctt tccttcgcgc tcttgggggc cggccatctc gtcggtctgt cggtcggtct
      541 cgcgatcggg atcggaattc tgatcggctg ggccgtggcg gttcccattc tgaccgccgg
      601 cattccgggg ccggccgaaa ccgtcgcact gacggtctgg ggcgatcagg ttcgcttctt
      661 cggtgccggc gtgatcggcg tcgcctcgat ctggaccttg ctcagcatcc tggggccgat
      721 cgtcggtggc gtccgctcgg cgatcgccgc ctcggccgcg cggcgcggcg atggcggcct
      781 ggcgccgatc caggagcggg acctgccgat cggtctggtg gcgctcgcga gccttggcgc
      841 acttgcgctc atcggcctgc tcctcgctgc tcagctcggc ggcatcggca atgcgccctt
      901 gctgatcggc gggagcctcg cttttgtggt gctggcgggc gcgttcatcg cggcagtgtg
      961 cggctatatg gcggggctga tcggcgcctc gaacagcccg atttcgggcg tcggcatcct
     1021 ctccatcatt gctgcggcgc tgctgatcgg cgcggtcgcc ggcgggagcg gggatagccg
     1081 gccgctggtc gtctatgcgc tgaccgtcac ggccgtcgtt ttcggcgtcg cgactatttc
     1141 gaacgacaat cttcaggatt tgaagaccgg ccagcttatc ggcgcgacgc cgtggcggca
     1201 gcaggtggcg ctgatattcg gtgtgttttt cggctcgctg gtgatcccgc cggtgctgtc
     1261 gctgctcaac caggcttatg gttttgccgg cgcgcccggc gccggaccga acgcgctgcc
     1321 cgcgccgcag gccgccctga tctcggcgct ggcgaaaggc gtgctgggcg gcacgctcga
     1381 ctggcggatg atcggctatg gcgcgatggc tggcgtggtg atcgtcggga tcgacctcgc
     1441 gctgaggggc acgagcggac ggcgttgccc gccgctcgcg gtgggcttgg gcatctattt
     1501 gccgatgcag accagtttgc tggtggtggt cggcgcgatc gctggatggg tctatgagcg
     1561 ctgggcacgg cgccagcgcg accccgaggg cgccgagcgc atgggcgtgc tgctcgcgac
     1621 cggcttgatc gtcggggaaa gcctgttcgg ggtggccctc gcgggcctcg tcgtcgcgag
     1681 cggcagcggc gcgcccttgg ggctcatgcc cgaaagcttc gcacctactg cgctgatcct
     1741 cgcgccattg ttgttcgcgg cgctcgcggc ctggctctac cggcgcaccg cttcagccgc
     1801 ggccgcgata gccggggacg ccctggtcgg gcagccatag gcccgcgggc ggctcgcccg
     1861 actgccagaa gacgtcgatt ggcatgccgc cgcgcggata ccaatagccg ccgatccgga
     1921 gccagagcgg cttcatctcg gcgaacagcc gctcggcgat cccgacggtg caatcctcgt
     1981 ggaaggcggc gtggttgcgg aacgcgccca ggaacagctt cagtgacttg gattcgacga
     2041 tcgtgtcgcc cggcgcatag tcgatcacca gatgcgcaaa atcgggctgg ccggtcaccg
     2101 ggcatagcga tgtgaactcg ggcgcagtga agcgcacgag atagggccgg ccggggcgcg
     2161 gattggggac gtaatcgagc accgcttctt ccggacgcgc aggaagagcg gagggttggc
     2221 cgagatgagt gatgttcatg aggctcatct agtcgttcgt cgacgaaccc ccaacacccg
     2281 acaggtctcg cttgtgggag ggcggcattt ccctttacgc cagtgaccaa caatagcggg
     2341 gagggactgt gaccaagaaa tttctgctcg cggcggccgc gctgctcgct gctcccgcgc
     2401 tcgcgcaaga caagccgaag gatgagccga aggtcgacaa ggccgcggag atcccgccgc
     2461 cccagctggt cacgatcaag cgctccggca cattcggtgg gcagcgaatc aactacacag
     2521 ccactgccgg cgagatgtat ctgaaaggcg atgacggcac gcccaaggcg gccatcaatt
     2581 attattccta cgtcaaggag cctcgcgatc cgtcgcggcc ggtcacgttc ctgttcaacg
     2641 gcggccccgg ctcgggctcg gtatggctgc atatgggcgc attcgggccc aagcgcgtcg
     2701 cgatcccgtc ggacgcgcgc gacgatggcg cgccgcctta tccgatcctc gacaatcccg
     2761 actgcctgct cgacgttacc gacatcgtct ttatcgatcc cgtcgggacg ggattttccc
     2821 acgcactcgg caagacggac ccgaaggact attggggcgt caccaaggat gcgaaatcgg
     2881 tcgcacaagt catccggctt tggctcaacg acaatggccg ctggaacagc ccgaaatttt
     2941 tgggcggcga gagctatggc accacgcgct cggcagcggt cgcgcacgag ctggaaggcg
     3001 cgtacaacga cgtcgccttg aacggcatca tcctcgtctc gactatcctc gatttcggcg
     3061 cgcaggcgga agtcgagggt aacgacatgc cctacatcat cgctgtgccg tcgatggctg
     3121 cggtcgcctg gtatcacaac aaggtcgctg agcgacccgc cgccgttgac cagttcgtcg
     3181 ccgaagcgcg ggcctttgcc gctgggccct atgcgaccgc gcttatgaaa ggccaggcgc
     3241 tgcagggcga ggagcgcgcg acgattcgcc gccaactcgc ccgcttcacc gggctctccg
     3301 aaacctttct cgaacgcgcc gacctgcggc cctcgcccgg ccgcttctgg aaggagctgc
     3361 tgcgcgacca ggggctggtc gtcggccgcc tcgacagccg ctataccggc cgcgatcgcg
     3421 acaatgcggg cgagcagatc gacaatgacc caagcttcta tggcattgac ggcggttata
     3481 cggcggcgat caattcctat ctgcgcggcg aattcggctg gaagaccgac cgctcctatg
     3541 tgacgatcgg ctcggttggg ccctgggact gggatctggg ccgcgacgac gcggcctatt
     3601 acaagtcggt cgcgccctat atcggcaagg cgctacgcga gaatagcggc ctgcgcattt
     3661 tcgtcggcca gggctattac gacttcgcca cgcccttttt cggcgctgaa tacgcgcttt
     3721 cgcgcaccgg atttccgcag gaccgcatcc agttccacta ctaccaggcc ggccacatga
     3781 tgtacgtccg cgacgaagac cggcacaagc tggccgaaga tgtgaaggca tttatccgct
     3841 ccaggtgaga cgcctccacg cgctcatccg gttttcaagc gtcgtcggct tggctaaggc
     3901 tcgtctctca tcgaggagga cgggcatgga cgcgttggta tcgactgact ggctggagaa
     3961 ggaactcggc agctcggacc tgcgtgttgt cgatgccacc tggctgatgc cgggcgaagg
     4021 cgatgccgct gcggcctatg agcaggcgca tattccaggc gcggtgttca tggatctggc
     4081 cgagctcgcc gacaccagca cctcggtccc caacatgctg ccgcctgcgg agaaattcgc
     4141 cagccgcatg cagtcgctgg gcctgggcga cggcagccgc atcgtcgtgt acgaccagtc
     4201 gccctacaag acggcggcgc gcgcctggtg gatgctgcgg accttcggcg cgcatgacgt
     4261 cgcgatcctc gacggcggct gggcgaaatg gcgggccgag gcgcgggcgg tcgaaagcgg
     4321 gaagccgcac ctccggcacc gccacttcac cgcctggcat gatcccaagg gcctgcgcac
     4381 gcttgagcag atgaaggcca atatcggcac gcgcgcagag caagtgctcg atgcgcgctc
     4441 gccggaccgt tttgccgggc aggctgcaga gcgggccggc gtgcagccgg gacatatccc
     4501 aggttcgaag aacctgcgct acgatcggct cttcaatcca gacgggacct ataagcgcgg
     4561 cg
//
LOCUS       DASQVK010000365         3387 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_149613,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000365 DASQVK010000000
VERSION     DASQVK010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3387)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3387)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3387
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149613"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1289)
                     /locus_tag="VE567_07885"
     CDS             complement(<1..1289)
                     /locus_tag="VE567_07885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HYZ48798.1"
                     /translation="MAFALTSTGLSDALVILGAAGLVIPAFARFRISPVIGFILVGAL
                     VGPFGLGRLVPDHRWLYYFTISDPHAMEPFAELGIILLLFAIGLELSLRRLWEMRTLV
                     FGVGAAELALSGLLIGLALVLLGQPWMGAFGLGLALALSSTALVLPMTGIDGPIGRPA
                     FAMLLFEDLALVPIIFLLGAVGAGGNPLADLGATAVAGIAVVTVLLIGGRFLLPRLFA
                     QAARAKNPELFLAASLLAVIAASLATSAVGLSPIVGALIAGLSIAETEYRGEVESITA
                     PFRGLALGVFLIAVGMSIDLAQVAANWPTLMAAIMGVMLVKAFVTLMLLRLAGTAPGA
                     AIQTGILMASPSETTLIVLGAAAEAGLIRASTASFWQIVTALGLTLTPLLARIGRDLG
                     RRVEMAAHEPVEPESPGTVIIGFGRVGRMVADMLRAH"
     gene            1343..2545
                     /locus_tag="VE567_07890"
     CDS             1343..2545
                     /locus_tag="VE567_07890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYZ48799.1"
                     /translation="MADHDVVIAGGGPAGMMAGFLFARAGVKTLVLEKHGDFLRDFRG
                     DTVHPSTMEILHELGLLERFLERPHQRLDRAELRMAGRTWRIGDLSHLRTPAPFIAMM
                     PQWDFLDFLRGVAETLPTFALETEAPVAGFIEQQSRVVGVRMADGRERRARLTIAADG
                     RGSLVRNLLPVEELGAPMDVFWFRVSKRSDQPGGLRGNVERGRLLVMIDRGDYWQCAF
                     LIPKGKAEDYSARGIAAIRKEVAAAAPDLDLAELDEISDLHLLTVTLDRLTRWHRPGL
                     LAIGDAAHAMSPIGGIGINLAIQDAVAAANILAEPMAHGADIDGLLGQVQRRRMWPTR
                     VIQAAQKAAQNRVIGRLLETGPPITDAPWIVKLLDRFPLLQRIPGRFIGLGIRREQVR
                     SPDAFGPS"
     gene            complement(2552..>3387)
                     /locus_tag="VE567_07895"
     CDS             complement(2552..>3387)
                     /locus_tag="VE567_07895"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004450 - isocitrate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006102 - isocitrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HYZ48800.1"
                     /translation="VGRHAFGDQYKATDFRVPGPGKLRLVFEGEDGTLIDEEVFQFPS
                     SGVAMGMYNLDDSIRDFARASLNYGLVREWPVYLSTKNTILKAYDGRFKDIFQEVYDN
                     EFKPQFEKLGIVYEHRLIDDMVASALKWSGKFVWACKNYDGDVQSDSVAQGFGSLGLM
                     TSVLLSPDGKTVEAEAAHGTVTRHYRMHQQGKATSTNPIASIFAWTGGLKYRGRFDGT
                     PDVTRFAETLERVCIETVERGSMTKDLAILIGPDQPWMTTEQFFEEIRSNLEKAMASW
                     S"
BASE COUNT          623 a         1083 c         1132 g          549 t
ORIGIN      
        1 ctgtgcgcgc gtagcatgtc ggcgaccatc cgcccgaccc ggccgaagcc gatgatgacc
       61 gtgccggggc tctcgggctc gacgggctcg tgagccgcca tttcgacccg ccggccgaga
      121 tcccgcccga tccgcgcgag caggggcgtg agcgtaagcc cgagcgcggt aacgatctgc
      181 cagaagctcg cagtcgaagc gcggatcagc ccagcttccg ctgcggcgcc gagcacgatc
      241 agcgtggttt cggacggcga tgccatcagg atacccgtct ggatcgcggc gccgggcgcc
      301 gtccctgcca ggcgcaggag catcaatgtg acgaacgctt tgaccagcat gacgcccatg
      361 attgccgcca tgagcgtcgg ccaattggcg gcgacctggg ccaagtcgat gctcatgccg
      421 acggcgatca ggaacacacc gagcgcaagg ccgcggaagg gcgcagtgat cgattcgacc
      481 tcgccccgat attcagtctc ggcgatgctg agccccgcga tcagcgcacc gacgatcggc
      541 gacaagccca ccgcgctggt cgcaaggctt gcggcgatca cggcgagcag gcttgctgcc
      601 aggaacagct ccgggttctt ggcgcgtgcc gcctgggcga agaggcgcgg caggagaaaa
      661 cggccgccga tcagcaacac cgtcaccacc gcgatgccgg cgactgccgt tgcgccaagg
      721 tcggcgaggg gattgccgcc cgccccgacc gcgcccaaca ggaagatgat cggcaccagc
      781 gccagatcct cgaacagtag catcgcaaag gcggggcggc cgatcgggcc gtcgatcccg
      841 gtcatcggca gcaccaaagc agtcgacgac aaagcaagcg cgaggccgag gccgaaggct
      901 cccatccagg gctggccgag caagactaaa gcaagcccga tcagcaggcc cgacagcgcc
      961 agctcggccg cgccgacgcc gaacacgagc gtgcgcatct cccataggcg ccgcagcgac
     1021 agttcgaggc cgatcgcgaa cagcagcagg atgatgccga gttccgcaaa gggctccatc
     1081 gcatgcgggt cggagatcgt gaaataatag agccagcgat gatcgggaac gagccggccg
     1141 agcccgaacg gcccaaccag cgcaccgacg aggatgaaac cgatgactgg gctgatccga
     1201 aaccgcgcaa aggccggaat gaccagcccc gccgcgccca gaattacgag cgcgtcggaa
     1261 aggcccgtcg aagtgagtgc gaatgccact cacatgtctt aagcggcagg cgagccgctt
     1321 gtcagccgaa aggagcagga ccgtggcgga tcatgatgtg gtgatagcgg gcggcggccc
     1381 ggccggcatg atggcggggt ttctgttcgc ccgtgccggc gtgaagacgc tcgtgctgga
     1441 aaaacatggc gatttcctgc gcgattttcg gggggatacg gttcacccgt cgacgatgga
     1501 gattctccac gaactcgggt tgctcgagcg tttcctcgag cgtccccacc agcggctcga
     1561 tcgcgcggaa ctgcggatgg ccggccggac ctggaggatc ggcgacctct cgcatctgcg
     1621 gacgcccgca ccgttcatcg ccatgatgcc tcagtgggat ttcctcgatt tcctgcgcgg
     1681 cgtcgccgaa accctaccaa ccttcgcgct ggagacggag gcgccggtcg caggcttcat
     1741 agaacagcaa tccagggtcg tcggcgtgcg catggctgac gggcgagagc ggcgggcgcg
     1801 cctgacgatc gccgcggatg gccgcggctc gctggtgcgg aacctgctgc cggtcgaaga
     1861 gcttggcgcg ccgatggacg tcttctggtt tcgggtttcg aagcgatccg atcagccggg
     1921 cggattgcgc ggcaatgtcg agcgcgggcg cttgctggtg atgatcgacc gcggcgatta
     1981 ttggcaatgc gccttcctga tcccgaaggg gaaggcagag gactactcag cacgcggaat
     2041 cgccgccatc cgcaaggaag tcgccgccgc ggcgcccgat ctcgatctcg ccgagttgga
     2101 tgagatcagc gaccttcatt tgctgacggt cacgctggac cggctgactc gctggcatcg
     2161 gcccgggctg ctcgcgatcg gcgatgcggc gcacgcgatg tccccgatcg gcggcatcgg
     2221 catcaacctg gcgatccagg acgccgtcgc ggccgccaat atcctggccg agccaatggc
     2281 gcacggcgcc gatatcgacg gcctgctcgg ccaggtccag cgacggcgca tgtggccgac
     2341 gcgggtcatc caggcggctc agaaagcggc gcaaaaccgg gtcatcggcc gcctgctcga
     2401 aacggggccg ccgatcaccg acgcgccgtg gatcgtgaaa ttacttgacc gtttcccgct
     2461 gctccagcgg atcccgggcc ggttcatcgg tctcggtatc cggcgggagc aggtgcgctc
     2521 gcctgatgcg tttgggccca gctagacccg ttcagctcca gctcgccatc gccttttcga
     2581 ggttgctccg gatctcctcg aagaactgct cggtcgtcat ccagggttgg tcggggccga
     2641 tcaggatcgc gagatccttg gtcatggagc cccgctcgac tgtttcgatg cagacacgtt
     2701 ccagtgtttc ggcgaagcgc gtcacatcgg gcgtgccgtc gaagcggccg cgatatttga
     2761 ggccgccggt ccaggcaaag attgaggcga tcgggttggt cgaggtcgcc ttgccctgct
     2821 ggtgcatgcg ataatggcgg gtgacggtgc cgtgtgctgc ttccgcttcg acggttttgc
     2881 cgtcgggcga gagcagcacc gaggtcatca ggcccagcga gccgaagcct tgcgccacgg
     2941 aatcggactg cacgtcgccg tcataattct tgcaggccca gacgaatttg ccgctccatt
     3001 tgagcgcgct cgccaccatg tcgtcgatca agcgatgctc gtaaacaatg ccgagcttct
     3061 cgaactgggg cttgaattcg ttgtcgtaca cttcctggaa gatatccttg aagcggccat
     3121 cataggcctt gaggatcgtg ttcttggtcg aaagatacac gggccattcg cgcaccaggc
     3181 cgtagttcag cgaggcgcgg gcgaaatcgc ggatcgaatc gtccagatta tacatgccca
     3241 tggcgacgcc ggaggagggg aattggaaca cctcctcgtc gatcagggtg ccgtcctcgc
     3301 cttcgaagac caggcgcagc ttgccggggc cgggcacccg gaaatcggtc gccttgtact
     3361 ggtcgccgaa cgcatggcgg ccgacca
//
LOCUS       DASQVK010000366         3139 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_244310,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000366 DASQVK010000000
VERSION     DASQVK010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3139
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244310"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..814
                     /locus_tag="VE567_07900"
     CDS             <1..814
                     /locus_tag="VE567_07900"
                     /inference="COORDINATES: protein motif:HMM:NF012245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HYZ48801.1"
                     /translation="ETRLMGAIERLARDTHEACDLSRRLMDCALSSQTQVSALLQAAE
                     SSEQRTAALSQQTAALQQALADIGARMTAQANTNREMEQLARLVEDHAQLLGENAEGI
                     GAVAGRIEELSKQTNMLALNATIEAARAGDSGKGFAIVAAEVKSLALHSGVATGEVKA
                     RAVEVGTSAGVTRRLASDAENCVGAYNGIAVAISEALDAHGHVVQAIERHTDEAAAFA
                     ADLRAKAGAAAKVAGDAAQVVNVLDTVSHTLVERAQGLVEETSRFVAELRAA"
     gene            complement(811..1827)
                     /locus_tag="VE567_07905"
     CDS             complement(811..1827)
                     /locus_tag="VE567_07905"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010218141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HYZ48802.1"
                     /translation="MRYGFWMPVFGGWLRNVPDEGMEASWDYVKRLTQRAEAIGYDLT
                     LIAELNLNDIKGVEQPALDAWSTAAALAAVTERLELMVAVRPNFHQPALFAKAAANID
                     QVSGGRLSLNVVSSWWADEARQYGLQFDQHDDRYARTSEWLQVVVGLWKHDRLSFDGQ
                     FYRTEDAICSPKPAHRPVIYAGGESEAAKTMIANLCDAYVMHGDPVTAIAPKIADMKA
                     RRERVSSKPMTFGMAAYTIVRDSEAEARRELERITTVKELPPGYANFDQWLSGTQLER
                     ELKIQEYAVSNRGLRPNLVGTPEQLKERIAEYEAAGLDLLLLQMSPQAEEMERFAAQV
                     MGTA"
     gene            complement(1824..2726)
                     /locus_tag="VE567_07910"
     CDS             complement(1824..2726)
                     /locus_tag="VE567_07910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010218143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-glutamate ligase"
                     /protein_id="HYZ48803.1"
                     /translation="MADLAILYEHPLWFRPLFSALEARGIDYIALHADDHCFAPGKGR
                     PPAPLIFNRLAQSSFLRSAEHPIFYAAALFEEWERQGATIINGGKAFAIDSSKARQLS
                     LIASLGLEVPATRVVHRAADVVSAAEDLRFPIVVKANIGGSGAGIVRYDNLSELKVVA
                     AEGGFPASIDSVLLVQEYVPARGGRITRIETLDRQYLYAIDVEGGGAFDLCPADACVA
                     DSNIRLSAADPDPQLIAAAERIAEAMDLDVGGIEVMIDDRDGIPRFYDINALSNFVAD
                     PLTVLGWDPHERLVDWLEQWIAKA"
     gene            2808..3101
                     /locus_tag="VE567_07915"
     CDS             2808..3101
                     /locus_tag="VE567_07915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HYZ48804.1"
                     /translation="MKRLSSLETLSLWARAHRWADLRSTPRTDADGLFAGLKIRGRHH
                     IVRLNNWSVGGACIDLPGAAKIGERVRLVAGTFHSAGRIVWVATGRAGIEFVD"
BASE COUNT          581 a         1006 c         1000 g          552 t
ORIGIN      
        1 cgaaacgcgg ctgatgggcg cgatcgagcg gctcgcgcgc gacactcacg aagcctgcga
       61 tctatcgcgg cggctgatgg actgcgccct gagcagccag acccaggttt ccgcactgct
      121 ccaggctgca gaaagttcgg agcagcggac cgcggcactc agccagcaga ccgccgcgct
      181 ccagcaggcg ctggctgaca tcggcgcacg gatgaccgcg caggcaaata ccaatcgcga
      241 aatggagcag ctcgctcgcc tcgtcgaaga tcatgcgcag ctgctgggcg agaatgccga
      301 aggcatcggc gctgtcgccg gccgcatcga ggaactgtcg aaacagacca atatgcttgc
      361 gctcaatgcc actattgaag cggcacgggc aggcgacagc ggcaagggct tcgcgatcgt
      421 cgctgcagaa gtgaaaagcc tcgccttgca tagcggcgtt gcgaccgggg aggtcaaggc
      481 gcgcgcagtc gaggtcggca cgtcggccgg tgtcacgcgc cgcctggctt ccgacgctga
      541 aaactgcgtc ggagcctata acgggatcgc cgtcgcgatc tcggaagcgc tcgacgcgca
      601 cgggcatgtc gtgcaggcca tagaacgcca caccgacgag gcggccgcct tcgctgcgga
      661 tctgcgcgcc aaggcgggcg cggccgccaa agtggccggc gatgctgccc aggtcgtcaa
      721 tgtgctcgac accgtgtcgc acacgctggt cgaacgcgcc caggggctgg tcgaagaaac
      781 ctcgcgcttc gttgctgagc tgcgcgcggc ttaggccgtg cccattactt gcgctgcaaa
      841 gcgctccatt tcctcggcct gcggactcat ctgcaggagc agcaggtcga gccctgcggc
      901 ctcgtactcg gcgatgcgct ccttgagctg ctctggcgta ccgaccagat tggggcgcag
      961 gccacggttg gagacggcat attcctggat cttgagctcg cgttccagct gagtgcccga
     1021 gagccactga tcgaaattgg catagcccgg tggcagttct ttgactgtcg tgatccgctc
     1081 cagctcgcgc ctggcttcgg cttcgctgtc gcgaacgatt gtataggccg ccatgccgaa
     1141 cgtcattggc ttggacgaaa cccgttcgcg ccgcgccttc atgtcagcga tcttgggggc
     1201 gatcgccgtg accggatcgc catgcatcac ataggcgtcg cataggttgg cgatcatcgt
     1261 cttcgcggcc tcactctccc cgccggcata gatgaccggg cggtgagcag gtttggggct
     1321 gcagatcgcg tcttcggtgc gatagaattg tccgtcgaag ctgagccggt cgtgcttcca
     1381 gagccccact accacctgca gccattcgct ggtgcgcgca tagcggtcgt catgctgatc
     1441 gaattgcagg ccatattgcc gcgcttcatc ggcccaccag gatgagacca cgttaaggct
     1501 caggcgcccg cctgagactt ggtcgatatt cgccgcagcc tttgcgaaaa gcgccggttg
     1561 gtggaaattg ggccgcaccg cgaccatcag ctcaagcctt tcggtcaccg ctgccagcgc
     1621 cgccgcagtg gaccaggcat cgagtgcagg ctgctcgacg cccttgatgt cgttgaggtt
     1681 cagctcggcg atcaaggtca gatcatagcc gatcgcttcc gcgcgctggg tgagccgctt
     1741 cacataatcc cagctcgctt ccatcccctc gtcgggcaca ttgcgcagcc agccaccgaa
     1801 gaccggcatc cagaagccgt atctcatgcc ttggcgatcc attgttcgag ccaatcgacc
     1861 agccgctcat gcgggtccca gccgagcacc gtcaacgggt cggcgacgaa gttcgagagc
     1921 gcgttgatgt catagaagcg ggggatgccg tcccgatcat caatcatcac ttcaatgccg
     1981 cccacatcca ggtccatcgc ttcggctatt cgctcagccg cagcgatcag ttgcggatcg
     2041 gggtcggcgg ccgacaatct gatgttgctg tccgcgacgc acgcatcggc cgggcaaaga
     2101 tcgaaggcgc cgccgccttc gacatcgatc gcatagagat attggcggtc tagcgtctca
     2161 atccgcgtga tccggccccc acgcgccggc acatattcct ggaccagcag gacgctgtcg
     2221 atgctggccg ggaacccgcc ttcggccgcg accactttca gctcggaaag attgtcgtag
     2281 cgcacaatcc ccgcgcccga tccaccgatg ttcgccttga cgacgatagg gaagcgaaga
     2341 tcctcggccg cggagaccac atcggcagca cggtgcacga cccgcgtcgc cggcacttcg
     2401 agcccgagcg aagcgatcag agagagctgc cgcgcctttg aagaatcgat cgcgaaggct
     2461 ttgccgccat tgatgatcgt cgcgccctgc cgttcccatt cctcgaacaa ggcagcggcg
     2521 tagaagatcg gatgttcggc cgatcgtaga aagctcgact gcgccagccg gttgaagatg
     2581 agcggcgcag gcggccggcc cttgccgggc gcgaagcagt gatcgtccgc gtggagcgct
     2641 atataatcga tgccccgcgc ctccaacgcc gagaaaagcg ggcgaaacca aaggggatgc
     2701 tcatacagga tcgcgagatc ggccatgacc gggcgctatg cggacgtagt gaaccgcatg
     2761 caagcgacaa ggatttggaa agagctttgc ggcagaaggc ggctgcgatg aagcggctta
     2821 gctctcttga aaccttgagt ctgtgggctc gcgcccatcg ctgggcagat ctgcggagca
     2881 cgccgcgcac cgacgcggac gggctcttcg caggcctcaa gatccgcggc cgccaccata
     2941 tcgtgcgcct gaacaattgg tcggtcggcg gcgcttgcat cgacctgccc ggtgcggcga
     3001 agatcggcga gcgcgttcgg ctcgtcgccg gcacttttca cagcgccggc aggatcgtct
     3061 gggtggcgac cggccgcgca gggatcgaat tcgtcgatta ggagccgctg gggctctcag
     3121 ccgacttgcc gaagaggcg
//
LOCUS       DASQVK010000367         7770 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_276659,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000367 DASQVK010000000
VERSION     DASQVK010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 7770)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7770)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7770
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_276659"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            65..952
                     /locus_tag="VE567_07920"
     CDS             65..952
                     /locus_tag="VE567_07920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HYZ48805.1"
                     /translation="MAANAAKRGRNEPEPPKIIIVKKIVADGHGGHHGGAWKVAYADF
                     VTAMMAFFLLMWLLGATTEKQRKSIADYFSPTLVETKRDSAGSNGLLGGSSLMDKDSY
                     PFKAAQTGTRALTVPLDARGGPKEGTGTKLRNEDMENFKRLSRRLQDQLATDSRLKNI
                     GKHVRFTPTRDGLRIDLIDDADYSMFALGTTALNPDAAALIDMVANAIVAVPNQVSIR
                     GHTDSLAYGDPRSMNNWMLSSGRAEATRRRLALSGVLEPRFERIEGVADRDPYVAKSP
                     ADPRNRRVSITLLYRGFRA"
     gene            complement(1022..1501)
                     /locus_tag="VE567_07925"
     CDS             complement(1022..1501)
                     /locus_tag="VE567_07925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010185014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper domain-containing protein"
                     /protein_id="HYZ48806.1"
                     /translation="MMKKLGLIGAALATAAGGTLAAAPAQAQYYGDYGYQGGRGYYGD
                     RYSGSRYAERYYGNRGYDSGYDGYYGNRGYGSRYDGYYGRGSYSNRSYYGRNSYSYGY
                     RCRSSGTTGTVLGAIVGGLLGDAAVGRRGDGTAGAIVGAGVGALAGRAIERSNNNRC"
     gene            complement(1721..2005)
                     /gene="rpmB"
                     /locus_tag="VE567_07930"
     CDS             complement(1721..2005)
                     /gene="rpmB"
                     /locus_tag="VE567_07930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HYZ48807.1"
                     /translation="MSRICELTGKGRQVGHNVSHANNKTKRTFLPNLQNVTLMSDALG
                     KSVKMRVSTHGLRSVEHVGGLDNWLTKTSEDKLGPTARKLKRELAKKLAA"
     gene            2148..2429
                     /locus_tag="VE567_07935"
     CDS             2148..2429
                     /locus_tag="VE567_07935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48808.1"
                     /translation="MRGLLAVLAIVVLLLIVGVATGFININQTKEARLPQVDVKGGQA
                     PAFNADVGSVDVGTKREPVAVPTVDVGTKNTTIKVPDVKVKTANETSNK"
     gene            2443..2583
                     /locus_tag="VE567_07940"
     CDS             2443..2583
                     /locus_tag="VE567_07940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YqaE/Pmp3 family membrane protein"
                     /protein_id="HYZ48809.1"
                     /translation="MGAVLLPPLGVFLDRGIGRDFWIAAGLTCLAWIPGVVFALWTVL
                     AR"
     gene            2598..3050
                     /locus_tag="VE567_07945"
     CDS             2598..3050
                     /locus_tag="VE567_07945"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011543019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0052717 - tRNA-specific adenosine-34
                     deaminase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside deaminase"
                     /protein_id="HYZ48810.1"
                     /translation="MVFPLPDPMRRALALAEATAADGEVPVGAVIMRDGQILAEGANA
                     PRRQNDPTAHAEIVAIRAAAAAIGEDRLQDCELWVTLEPCAMCAGAIALARIARLYYG
                     APDPKGGAVEHGARVFAQRTCHHRPEIYAGIGEVEASALLRRFFAERR"
     gene            3097..4290
                     /locus_tag="VE567_07950"
     CDS             3097..4290
                     /locus_tag="VE567_07950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010216539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HYZ48811.1"
                     /translation="MTAQPMTTLCWDDPLLLEDQLTDEERAIRDVAHGYAQDKLLPRV
                     IEAFAKEKTDRAIFNEMGELGLLGLTLPTDYGCAGASYVAYGLVAREVERVDSGYRSM
                     MSVQSSLVMYPIYAYGTEEQRRKYLPKLATGEWVGCFGLTEPDAGSDPGGMRTRAEKI
                     DGGYRISGAKTWISNAPIADVFVIWAKSDAHGGAIRGFVLEKGAKGLATPKIEGKLSL
                     RASITGMVMLDGVEVGEDALLPEVQGLKGPFGCLNRARYGISWGAMGAAEDCWHRARA
                     YTLERKQFGRPLAQTQLVQKKLADMQTEIVLGLQASLRVGRLMDEGRFAPEMVSLVKR
                     NNCGKALDIARTARDMHGGNGISEEYHVMRHLMNLETVNTYEGAHDVHALILGRAITG
                     LNAFF"
     gene            4277..5437
                     /locus_tag="VE567_07955"
     CDS             4277..5437
                     /locus_tag="VE567_07955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HYZ48812.1"
                     /translation="MPSSKPLAGLRVLELARILAGPWAGQMLADLGADVIKVERRGAG
                     DDTRGWGPPFVEGADGQKLSAAYYHSCNRGKRSITADFEDAADMERVRELAAEADVVI
                     ENFKTGGLKRYGLDYESLRALSPSLVYCSITGFGQTGPYAPRAGYDYLIQAMTGLMSI
                     TGIDEPTRAGVAVADLFTGVYSAGAILAALHRRQTTGEGAWIDMALLDVQTSVLANQA
                     MNYLVSGEAPGLTGNTHPNVVPYQPFETSDGRVIVAVGNDGQFARFAALLGVPELSDD
                     PDFKTNAARIANRVRLIPLLAARTRLMTRDALLAALEREGVPGGPINNIAQAFADPQV
                     LARGMRVELDAPHVAGGTLPQVRSPIVIDGQPMVAEKAPPALGADDADWRWR"
     gene            complement(5434..6324)
                     /locus_tag="VE567_07960"
     CDS             complement(5434..6324)
                     /locus_tag="VE567_07960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010187316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase II"
                     /protein_id="HYZ48813.1"
                     /translation="MADTEPRATDRAGMIAQLETLLTVEELDRDLYRGVRQPDGRGRV
                     FGGQVIAQALMAAARSADPERIPHSLHAYFMRPGDEAIPIIYRVNRDHDGGSFSTRRV
                     VAFQKGEPILNMAASFQKLEKGLDHQFDMPDVPPPEALPSEAEERLRIVDQAPEHLRE
                     FFVRPRPFETRHASPWSPLGSEPQAPKQNIWFKATAPVSGDAHMHRAMLAWASDMYLL
                     GTAMRPHGLSWLEPAAQTASLDHALWFHDDVRVDEWLLYSMDAPWSGRGRGFNRGTIF
                     TRDGRLVASVAQEGLMRRRG"
     gene            complement(6324..7460)
                     /locus_tag="VE567_07965"
     CDS             complement(6324..7460)
                     /locus_tag="VE567_07965"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYZ48814.1"
                     /translation="MPLFLTDEQSMLRDTARQFVSETAPVSHLRALRDANDPTGFSRD
                     LWKRFAEMGFTAILIPEAEGGLGLGHVEAGVVLEEIGRNLTPSPLLSTGIGATTALKH
                     GGAALRQNWFPRIAAGEAVAALAIDEGAKHRPAEIALKAERAGNGFKLTGAKTFVPHG
                     HVADLIIVAARTAGSAGDEQGLTLFAVERGAVGLTATPERLTDASLAARLEFLGVEVD
                     ADAVIGEVDQGWIGLTRMLSATRAGASAELLGVGGGAMDMMIDYLKDRRQFGVPIGSF
                     QALQHRAAHLYSEMEVARAAVLKAQQLLDADDPEAERAALVAKAMIGLATTLAVQEGV
                     QMHGGIGMTDEYDIGFYMKRQRVLAELFGDANWAADQLARMSGY"
     gene            complement(7461..>7770)
                     /locus_tag="VE567_07970"
     CDS             complement(7461..>7770)
                     /locus_tag="VE567_07970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYZ48815.1"
                     /translation="FEVRERAFRAMSEKFMDELKHGKAHPAQPSMMKYYGTELNKARY
                     ELVMAAGGGDALEWESPQSGGGAKARAWLRTKANSIEGGTSEIQLNIIAKRILELPGA
                     "
BASE COUNT         1321 a         2506 c         2564 g         1379 t
ORIGIN      
        1 ttcgaaccag ccggccttcg ccgacgtgtt cgacggcatg cgcggccggt aagaaggacc
       61 aacgatggcc gccaatgccg ccaagcgggg ccggaacgag cccgagccgc ccaagatcat
      121 catcgtcaag aagatcgtcg ccgatggcca tggcggtcat catggcggcg cgtggaaggt
      181 cgcctatgcc gatttcgtga cggcgatgat ggcgttcttc ctgctgatgt ggctgctcgg
      241 cgcgaccacc gaaaagcagc gcaagtccat cgccgattat ttctccccga ccctcgtcga
      301 gaccaagcgc gatagcgcgg gctccaacgg gctgctcggc ggctcgtcgc tgatggacaa
      361 ggattcctat ccgttcaagg cggcgcagac cggcacgcgc gctcttaccg tgccgctcga
      421 cgcgcgcggc ggcccgaaag aaggtacggg caccaagctg cgcaacgagg atatggagaa
      481 tttcaagcgg ctcagccgtc ggctgcagga ccagctggcg accgattcgc gcctcaagaa
      541 catcggcaag catgttcgct ttacgcccac gcgcgacggg ctgcggatcg acctcataga
      601 cgacgccgac tattcgatgt tcgcgctggg cacgacggcg ctcaatcccg acgcggcggc
      661 gctgatcgac atggtggcca acgcgatcgt cgctgtcccg aaccaggtgt ccatccgcgg
      721 ccataccgac agcctggcct atggcgatcc gcgctcgatg aacaattgga tgctctctag
      781 cggccgcgcc gaggcgacgc ggcggcggct ggcgctgagt ggcgtgctcg aaccccggtt
      841 cgagcggatc gaaggcgttg ccgatcgcga cccctatgtc gccaagagcc cggccgatcc
      901 acgcaatcgc cgtgtgtcga tcactttgct ttatcgaggt ttcagggcct gacatgcaaa
      961 aggccggggc gcatgcgccc cggcctccgt ctccccgcta cgcgacaggg ggagaaaggg
     1021 attagcagcg attgttgttg ctgcgctcga tcgcccggcc agccaatgcg ccgacacccg
     1081 cgccaacgat cgcgcccgcg gtgccgtcgc cgcggcgacc gaccgctgcg tcgccgagca
     1141 ggccgccgac aatagcgccg agcaccgtgc ccgtcgtgcc ggagctgcgg cagcgatagc
     1201 cgtagctata gctgttccgg ccataatagc tgcgattgct gtaagagccg cggccgtaat
     1261 agccgtcgta gcggctgcca tagccacgat tgccgtaata gccgtcgtag ccgctgtcat
     1321 agccgcggtt gccgtaatag cgctcggcat agcggctgcc agagtagcgg tcgccataat
     1381 agccgcggcc gccctgatag ccatagtcgc cataatattg cgcctgggcc ggagccgcgg
     1441 cgagggtgcc accggcagcg gtcgccaatg ccgcgccgat caggcctagc ttcttcatca
     1501 tgtccaatct ccttcgtcgc ggcgctcatg cgccatttcg tcgaaggtcc ttatgccgcg
     1561 attcgcttga gggcaggctg aatgcagatg tcaggcggca ttcatcttat gattgaaaat
     1621 tcaggagaaa ttgcaacggc cttggacgat gggaaagcca acgagaaaag ccggtcagga
     1681 ttgctccgga ccggctgcgg caatctcagg tgcggaaagc ttaagcggcg agcttcttcg
     1741 cgagttcgcg cttcagcttg cgcgcggtcg gcccgagttt gtcctcgctg gtctttgtca
     1801 gccagttgtc gaggccgccg acatgctcga ccgagcgcag cccgtgcgtc gagacgcgca
     1861 tcttgacgct cttgcccagc gcgtccgaca tcaaggtgac gttctgcaga ttgggcagga
     1921 acgtgcgctt ggtcttattg ttggcgtggg aaacattgtg gcccacctgc cggcccttgc
     1981 cggtcagctc gcaaatgcgc gacattggtt gtctctcaat aaatcgggtt gcccggaaag
     2041 ctggcgcgca tagcggcaca tggccgtttc gtcaatgcga ctccgcgcaa tgcaaccgta
     2101 acgggtccgg ttcgttcatc tgcgcgaacg aaacaggaga aaacccgatg cgcggattgc
     2161 tggcggtgct tgctatcgtt gtgttgctgc tgatcgtcgg tgtggcaacc ggcttcataa
     2221 atatcaacca gacgaaggaa gcgcggctgc ctcaagttga cgtcaaaggc ggtcaggcgc
     2281 cggcgttcaa tgccgatgtc ggctcggtcg atgtgggcac caagagagag cctgtggcag
     2341 tgcccacggt tgatgtcggc accaagaaca cgaccatcaa ggtgccggac gtgaaggtga
     2401 agacggccaa tgagaccagc aacaaataag gtcggcgctg tcgtgggcgc ggtgctgctg
     2461 ccgcccctcg gcgtttttct cgatcgcggg atcggtcgcg atttctggat tgcggccggt
     2521 ctgacttgcc tggcctggat cccgggcgtc gttttcgcac tgtggaccgt gctggcccgc
     2581 tgacttaagc gggccgcatg gtcttcccgt tgcccgatcc gatgcggcgc gccctggcac
     2641 tcgccgaagc caccgctgcg gatggcgagg tgccggtcgg cgctgtaatc atgcgcgacg
     2701 ggcaaattct ggcggagggc gctaacgccc cgcgccggca aaacgacccc acggcgcacg
     2761 cggagatcgt tgcgattcgc gcggcggctg cggcgatcgg cgaggaccgg ctgcaggatt
     2821 gcgaactctg ggtaacgctg gagccgtgcg cgatgtgcgc cggcgcgatc gcgctcgccc
     2881 gcatcgcacg gctctattac ggagcgcccg accccaaggg cggcgccgtc gagcatggcg
     2941 cacgggtttt tgcacaacgg acttgccatc atcggcccga aatttacgcc ggcatcggcg
     3001 aggttgaggc gtcggcgctg ctccggcgct tcttcgcgga gcggcggtag cgtttctccg
     3061 cgcgattgcc taagggggct gccgaggagc cgacatatga ctgcccaacc catgacgaca
     3121 ctgtgctggg atgacccgct gctgctggaa gaccagctca ctgacgagga gcgcgctatt
     3181 cgtgatgtcg cgcatggcta tgcccaggac aagttgctgc cgcgcgtgat cgaagcgttc
     3241 gccaaggaaa agacagaccg ggcgatcttc aacgaaatgg gcgaactcgg cctgctcggg
     3301 ttgaccctgc cgacggacta tggctgcgcg ggcgcatcgt acgtcgctta tggcctggtt
     3361 gcgcgcgagg tcgagcgggt ggacagcggc tatcgctcga tgatgagcgt ccagtcctcg
     3421 ctcgtgatgt acccgatcta cgcctacggg actgaggaac agcggcgcaa atatctgccg
     3481 aagcttgcga ccggtgaatg ggtcggctgc ttcggcctga cggagcccga tgcgggctct
     3541 gatccgggcg gcatgcggac gcgggcagaa aagatcgacg gcggctatcg catttccggc
     3601 gccaagacct ggatttccaa tgcgcccatt gctgacgtgt tcgtgatctg ggccaagtcc
     3661 gatgcgcatg gcggtgcgat ccgtggcttc gtgctggaga aaggcgcgaa aggcctcgcc
     3721 acgcccaaga tcgaaggcaa gctcagcctg cgtgcctcga tcaccggcat ggtcatgttg
     3781 gacggcgtgg aagtcggcga ggatgcgttg ctgccggagg tccagggcct caagggtccg
     3841 ttcggctgcc tcaatcgcgc gcggtacggg attagctggg gcgcgatggg cgcggccgag
     3901 gattgctggc accgcgcccg cgcctatacg ctggagcgca agcagttcgg ccgcccgctc
     3961 gcccagaccc agcttgtcca gaagaagctc gcggatatgc agacggagat cgtgctgggc
     4021 ctccaggcga gccttcgcgt cggccggctg atggacgaag gccgcttcgc gccggagatg
     4081 gtcagcctcg tcaagcgcaa caattgcggc aaggcgctgg atatcgcccg caccgcacgc
     4141 gacatgcacg gcggcaacgg gatttccgag gaatatcacg tgatgcgcca cctgatgaac
     4201 ctcgagaccg tcaacaccta tgaaggcgcg catgacgtcc atgcgctgat cctcggccgc
     4261 gcgatcacgg gtcttaatgc cttcttctaa gccgctcgcc ggtctccgcg tcctcgaact
     4321 cgcgcgcatt ctggctggcc cctgggccgg gcagatgctc gcggatttgg gggcggacgt
     4381 catcaaggtg gagcgtcgcg gtgccggcga cgacacgcgc ggctggggcc cgccgttcgt
     4441 ggaaggcgcg gacggacaaa aattatccgc cgcttattat cacagctgca atcgcggcaa
     4501 gcgctcgatc accgccgatt tcgaggacgc ggccgacatg gagcgtgttc gcgagcttgc
     4561 ggccgaagcg gacgttgtca tcgaaaattt caagactggc gggctcaagc gctatggcct
     4621 ggattatgag agcctgcgag cgctgagccc gagcctcgtc tattgctcga ttaccggctt
     4681 cgggcagacc ggcccttacg cgccgcgtgc aggctatgac tatctgatcc aggcgatgac
     4741 cgggctgatg agcattaccg gcattgatga gccgacccgt gccggcgtcg cggtcgccga
     4801 cctgttcacc ggcgtctatt cggcgggcgc gatcctggcc gccctgcatc gccggcagac
     4861 cacgggcgag ggcgcctgga tcgatatggc tctgctcgac gtccagacgt cggtgctcgc
     4921 caaccaggcg atgaattatc tcgtctccgg cgaagcgccg gggcttaccg ggaatacgca
     4981 cccaaatgtg gtgccttatc agccatttga gaccagcgac gggcgcgtaa tcgtcgccgt
     5041 cggcaatgac gggcaattcg cacgcttcgc cgcgcttctc ggcgtgcctg agctgtcgga
     5101 cgatccggac ttcaaaacga acgcggcccg aatcgccaat cgggtgcggc tgatcccgct
     5161 gctcgccgcg cgcacgcggt tgatgacgcg cgacgcgctg ctggcggcgt tggagcgcga
     5221 gggcgttccc ggcgggccga tcaacaatat cgcgcaggct tttgccgatc ctcaggtcct
     5281 ggcccgcggc atgcgcgtcg aactcgacgc gccgcacgtc gccggcggca cgttgccgca
     5341 agtgcgctcg cccattgtga tcgatggcca gccaatggtg gccgagaagg ccccaccggc
     5401 gctgggggcg gatgatgcgg attggcgctg gcgttagccg cgccgccgca tcaacccttc
     5461 ctgcgcgacg ctcgccacca gccggccgtc gcgcgtgaag atcgtgccac gattgaagcc
     5521 gcgcccgcgg ccgctccatg gcgcatccat cgagtagagc agccactcgt cgacccgcac
     5581 atcgtcgtgg aaccagagcg cgtgatccag gctggcggtc tgcgcggccg gttcaagcca
     5641 gctcagcccg tgcggacgca tcgccgtgcc gagcaggtac atgtcgctcg cccaggcgag
     5701 catcgcgcgg tgcatatggg catcgccgga cacgggagcg gtggccttga accagatatt
     5761 ctgcttcggt gcctgcggct ccgatccgag tggcgaccag ggcgaggcgt ggcgcgtctc
     5821 gaatggtcgc ggacgcacga agaactcgcg gagatgctcc ggcgcctgat cgacgattcg
     5881 gagacgctct tccgcttcgg acggcagcgc ctccggcggc ggcacgtcgg gcatgtcgaa
     5941 ttggtggtcc agcccctttt ccagcttctg gaaagaggcg gccatgttga ggatcggctc
     6001 gcccttctgg aaggcgacga cgcgccgggt cgagaagctg ccgccgtcat ggtcgcggtt
     6061 gacccggtag atgatcggga ttgcctcgtc gcccggccgc atgaaatagg cgtgaagcga
     6121 atgcggaatg cgctcgggat cggccgagcg cgccgccgcc atcagcgcct gggcgatcac
     6181 ttgcccaccg aagactcggc cgcgcccgtc gggctggcgc acgccgcgat agagatcgcg
     6241 atccagctcc tcgacggtca gcagcgtttc gagctgagcg atcatgccgg cgcgatcggt
     6301 cgcgcgtggt tcggtatccg ccattagtag ccgctcatcc gcgcaagttg gtctgccgcc
     6361 caattggcat caccgaacag ttcggcaagg acccgctggc gtttcatgta gaagccgatg
     6421 tcatattcgt cggtcatccc gatgccgcca tgcatctgca ccccttcctg cacggcaagc
     6481 gtggtggcga ggccgatcat ggccttggcg acgagcgcgg cgcgctcggc ttccggatcg
     6541 tccgcgtcga ggagttgctg cgctttgagc accgctgcgc gcgcaacttc catttccgaa
     6601 tagaggtgcg ccgcgcggtg ctggagcgcc tggaagctgc cgatcggcac gccgaattgc
     6661 ctgcggtcct tcagataatc gatcatcatg tccatcgcgc cgccgcccac cccgagcagc
     6721 tcggccgagg cgcccgcacg cgtggccgaa agcatgcgcg tgagtccaat ccagccctgg
     6781 tcgacttcac cgatcacggc gtcggcatcg acctcgacgc ccaggaattc gaggcgggcg
     6841 gcgaggctgg catcggtgag ccgttcaggc gtagcggtga ggccgactgc gcccctctcc
     6901 accgcgaata gcgtcagccc ctgctcgtcg cccgcactgc cggccgtgcg cgccgcgacg
     6961 atgatcagat cggcgacatg gccgtgcggc acgaacgtct tggcgccggt cagcttgaag
     7021 ccattgccgg cacgctcggc cttgagcgcg atctcggccg ggcggtgctt cgccccctcg
     7081 tcgatcgcga gcgccgccac cgcctcgccg gcggcaatgc gcggaaacca gttctgccgg
     7141 agggctgcgc cgccgtgctt cagtgcggtg gtcgcgccga ttccggtcga gagcagaggc
     7201 gaaggcgtga ggttccgccc gatctcctcc agcaccacgc cggcctcgac atggccgagg
     7261 cccagcccgc cttccgcttc ggggatcagg atcgcggtga accccatctc agcgaaccgc
     7321 ttccacaaat cgcgtgaaaa gccggtcggg tcgttcgcgt cacgcagcgc gcgcaagtgg
     7381 ctgacaggcg cggtctcgct cacgaattgc cgcgccgtgt cacgcagcat cgactgctcg
     7441 tcggtcagga acaaaggcat tcaggccccc ggcaattcga gaatgcgctt ggcaatgatg
     7501 ttgagctgga tctcgctggt gccgccctcg atcgaattgg ccttggtccg cagccacgcc
     7561 cgcgccttcg cgccgccgcc cgactgcggg ctctcccatt cgagggcatc gccgcccccg
     7621 gcggccatca ccagctcgta gcgcgccttg ttcaattcgg tgccgtaata tttcatcatc
     7681 gacggttgag cggggtgcgc tttcccatgc ttcaactcgt ccatgaactt ctcggacatg
     7741 gcgcggaagg cgcgctcgcg cacttcgaac
//
LOCUS       DASQVK010000368         4686 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_181271,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000368 DASQVK010000000
VERSION     DASQVK010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4686
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181271"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(7..636)
                     /locus_tag="VE567_07975"
     CDS             complement(7..636)
                     /locus_tag="VE567_07975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48816.1"
                     /translation="MRAWILLPLALTACAKQQAALPNDPIQRAATCGVVAAADARRAG
                     GVDAKFTIEQQGHILHYALLSGAEGGQFDKGRSAAVVNAMPRLGDKVTSGKWEPLIDE
                     CAAAFPATRPAASVTLPSDTLDAQAGCHDLADFLTTALRAQENNFIDRMRAYDGMQRK
                     LDPRMGATLKARGLDQAQANDARAKAMAKVVALGPPTAVLDQCVKKFGS"
     gene            complement(793..2184)
                     /gene="lpdA"
                     /locus_tag="VE567_07980"
     CDS             complement(793..2184)
                     /gene="lpdA"
                     /locus_tag="VE567_07980"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007684287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA];
                     GO_process: GO:0051068 - dihydrolipoamide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HYZ48817.1"
                     /translation="MADYDFDVLVIGAGPGGYVAAIRAAQLGLKTACAESRETLGGTC
                     LNVGCIPSKAMLHASEYYDQAANGAFAKLGIKVKPELDLDTMHGQRNDAVKQLTGGIE
                     FLFKKNKIEWLKGLAAFTGKDTVKIGDREVRAKNIVIATGSSVTPLPGVQIDQKVVVD
                     STGALELEKVPEHLVVIGGGVIGLELGSVWRRLGAKVTCVEFLDQILPGFDGEVRKEA
                     NKIFKKQGFEFRLSTKVTGVEVKNGKATLTVEPAAGGASETIAADAVLVSIGRRPNTE
                     GLNLEAAGLNTNNRGQIEIDHDFRTAVPGIWAIGDVVPGPMLAHKAEDEGIAVAENIA
                     GQTGIVNHDVIPSVVYTWPEIAGVGLTEEQAKERGEVKTGKFPMLANSRAKTNHEPDG
                     FVKVVADAKTDRVLGVWMIASVAGTMIAQAAQAMEFGATSEDIAYTCHAHPTHSEALK
                     EAAMAVTGKPIHI"
     gene            complement(2196..3437)
                     /gene="odhB"
                     /locus_tag="VE567_07985"
     CDS             complement(2196..3437)
                     /gene="odhB"
                     /locus_tag="VE567_07985"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004211157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045252 - oxoglutarate dehydrogenase
                     complex [Evidence IEA];
                     GO_function: GO:0004149 - dihydrolipoyllysine-residue
                     succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HYZ48818.1"
                     /translation="MAVEIKVPTLGESITEATIGEWLKKPGEAVKADEPVASLETDKV
                     SVEVPAPAAGVMGQYAAQVGDTVQVGALIGTIEEGGAAAAPAPAPAAAPAPAPAPAPA
                     PSPAPAQEEPAGDLTLSPSVRRMVLEHGLDPTQIKGTGKDGRLTKEDVQQAIDAAPAK
                     PAAPAPAPAPSPTPAPAATGERREERVRMTRLRQTIAARLKEAQNTAAMLTTFNDVDM
                     SAVMEARTKYKDLFEKKHGVRLGFMGFFVKAAVQALRDVPAVNGSIEGDEIVYRDYVD
                     VSVAVSAPNGLVVPVVRDAQSLSVAAIEKQIADYGKRARDGTLKLEEMKGGTFTISNG
                     GVFGSLLSTPIINPPQSAVLGLHRIDERPVVRDGQIVIRPMMYLALSYDHRLIDGREA
                     VTFLVALKNAIEDPTRLLIDL"
     gene            complement(3449..>4686)
                     /gene="sucA"
                     /locus_tag="VE567_07990"
     CDS             complement(3449..>4686)
                     /gene="sucA"
                     /locus_tag="VE567_07990"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978731.1"
                     /note="SucA; E1 component of the oxoglutarate
                     dehydrogenase complex which catalyzes the formation of
                     succinyl-CoA from 2-oxoglutarate; SucA catalyzes the
                     reaction of 2-oxoglutarate with dihydrolipoamide
                     succinyltransferase-lipoate to form dihydrolipoamide
                     succinyltransferase-succinyldihydrolipoate and carbon
                     dioxide; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HYZ48819.1"
                     /translation="ERYREVGRILTTIPDGLNVHKTLQRIIEARRAMFETGEGFDWAT
                     AEALAFGSLVHEGYQVRLSGQDSGRGTFSQRHAVWVDQQSGDKYIPLTTVEGGGRFEV
                     RDSPLSEFGVLGFEYGYSLADPKTLVMWEAQFGDFANGAQVVIDQFIAAGMAKWGRLC
                     DLALFLPHGYEGQGPEHSSARPERYLQLCAEDNMQVANCTTPANYFHILRRQMLRPFR
                     KPLVIFTPKSLLRHKMAVSSAEDFLGASHFRRILSDPSGPADQDVKRLVLCSGKVAYD
                     LIEARDAAGDQHTSIVRIEQLYPFPGEPLTARLQRMANLEEVVWTQEEPKNNGAWFFV
                     EPWIEASMKEAGVKPERPRYAGRAASASPATGLAKRHAFEQGALVADALGHNVREEIR
                     RTQSGAGTSAKAPKQAPAS"
BASE COUNT          698 a         1546 c         1576 g          866 t
ORIGIN      
        1 gagaacctag ctcccgaact tcttcacgca ttgatcgagc acggcggtgg gcgggcccag
       61 cgcgaccact ttggccatgg ccttcgcccg cgcgtcattc gcttgcgcct gatcgagccc
      121 gcgcgccttc agcgtcgcgc ccatgcgggg gtcgagcttg cgttgcatgc catcataggc
      181 gcgcatccgg tcgatgaaat tattttcctg cgcgcggagc gcagtggtga ggaaatcggc
      241 gaggtcgtgg cagccggcct gcgcgtcgag cgtgtcggac gggagcgtga ccgacgcggc
      301 cggccgggtg gcggggaaag cggccgcaca ttcgtcgatc agcggctccc atttgccgga
      361 cgtcactttg tcgcccagcc gcggcatcgc gttcaccact gcggcggaac ggcccttgtc
      421 gaactgcccg ccctcggcac cagagagcag cgcatagtga aggatatggc cttgctgctc
      481 gatcgtgaat ttggcgtcga caccgccggc gcgccgcgca tcggccgccg ccaccacgcc
      541 gcacgtcgcc gcgcgctgga tgggatcgtt gggcaaggcg gcctgctgct tcgcgcaggc
      601 agtcagggcg aggggcagca aaatccaagc acgcatcgtc tctcctccgt aacgagatgg
      661 agacggatga ggggggctgg aggttccacg aggcgccgcg ggcgaagccc gcgtcgtcgg
      721 tcggcgctcc cggcgccgcc gaccggtcta gcctattccg ctcgcaatta gcttcgctaa
      781 tcgccttgcc ggctagatat ggatcggctt gcccgtcact gccatcgccg cttccttgag
      841 cgcttcggaa tgcgtcgggt gggcgtggca ggtataggca atgtcctcgc tcgttgcgcc
      901 gaactccatg gcctgcgcgg cctgggcgat catcgtgccc gcgacgctgg cgatcatcca
      961 caccccaagc acgcggtccg tcttcgcgtc ggcgacaact ttcacgaagc cgtccggctc
     1021 gtggttggtc ttggcgcggc tgttggcgag catcgggaat ttgccggtct tgacctcgcc
     1081 ccgctccttc gcctgctcct cggtcaggcc gacgccggcg atctcgggcc aggtataaac
     1141 gacggacggg atcacatcgt ggttcacgat gccagtctgg cccgcgatgt tctcggcgac
     1201 ggcgatgcct tcgtcttcgg ccttatgggc gagcatcggg ccgggcacga catccccaat
     1261 cgcccagatg ccggggacgg cggtgcggaa gtcatggtcg atctcgatct ggccgcgatt
     1321 gttggtgttt agcccggcgg cctcgaggtt cagcccttcg gtattggggc ggcggccgat
     1381 cgaaacgagc acggcgtcgg ccgcgatcgt ctccgaggcg cccccggcgg ccggctcgac
     1441 cgtcagcgtg gctttgccgt tcttcacttc gacgccagtg actttggtcg agaggcggaa
     1501 ttcgaagccc tgcttcttga agatcttgtt cgcttccttg cggacttcgc cgtcgaagcc
     1561 ggggagaatc tggtcgagga actcgacgca ggtgactttc gcaccgaggc ggcgccagac
     1621 gctgcccagc tccagcccga tcacgccgcc gccgatcacg accagatgct cggggacttt
     1681 ctcgagttcc agcgcgccgg tggaatcgac taccactttc tggtcgatct ggacgcccgg
     1741 cagcggcgtc accgacgagc cggtggcgat gacgatgttc ttcgcgcgta cctcgcggtc
     1801 gccgatcttc accgtatcct tgccggtgaa ggcggcaagg cccttcagcc attcaatctt
     1861 gttcttcttg aaaaggaact cgataccgcc ggtgagctgc ttgaccgcgt cgttgcgttg
     1921 gccgtgcatc gtatcgagat cgagctccgg cttgaccttg atgccgagct tggcgaacgc
     1981 gccgtttgcc gcctggtcgt aatattccga agcgtgcagc atcgccttgg acgggatgca
     2041 acccacattg aggcacgtgc cgcccagcgt ctcgcggctc tccgcgcacg ccgtcttcag
     2101 gccgagctgc gccgcccgga tcgccgccac atagccgccg ggcccggcgc cgatcacgag
     2161 aacgtcgaaa tcatagtcgg ccatcgtgcg gctcctcaga ggtcgatcag caggcgggtg
     2221 ggatcttcga tcgcattctt cagggcaacg aggaacgtga ccgcctcgcg gccgtcgatc
     2281 aggcggtggt cgtagctcaa ggccaggtac atcatcgggc ggatgacgat ctggccgtcg
     2341 cgcacgaccg ggcgttcgtc gatgcggtgc aggcccagca cggccgattg cggcgggttt
     2401 atgatcggcg tcgagaggag cgagccgaac acgccgccgt tcgagatggt gaaggtgccg
     2461 cccttcattt cctcaagctt cagcgtgccg tcgcgggcgc gcttgccata gtcggcgatc
     2521 tgcttctcga tcgccgccac ggagaggctc tgcgcatcgc ggacgaccgg cacgacgagg
     2581 ccgttgggag cggagaccgc gaccgagacg tccacatagt cccgatagac gatctcgtcg
     2641 ccttcgatcg agccgttgac ggcgggcacg tcgcgcagcg cctggaccgc ggctttcacg
     2701 aaaaagccca tgaagccgag gcggacgccg tgcttcttct cgaacagatc cttgtacttc
     2761 gtccgcgctt ccatgacggc cgacatgtcg acgtcgttga acgtcgtcag catcgccgcg
     2821 gtgttctgcg cttccttgag gcgcgcggcg atcgtctggc ggaggcgggt catccgcacc
     2881 cgctcttcgc ggcgttcgcc ggtcgccgcg ggagctggcg tggggctcgg agcgggggct
     2941 ggagcgggcg ccgcgggctt ggctggcgcg gcatcgatcg cctgctgcac gtcttccttg
     3001 gtcagccggc catccttgcc cgtgcccttg atctgggtcg ggtcgagccc gtgctccagc
     3061 accatccggc gcacggaggg cgagagagtg aggtcgcccg cgggctcttc ctgggccgga
     3121 gcaggggagg gggccggagc cggagcaggt gccggcgccg gagcggcggc gggagcaggt
     3181 gccggcgcag cggccgctcc gccttcctcg atcgtgccga tgagcgcgcc gacctggacg
     3241 gtgtcgccca cctgggccgc atattgaccc atcacgccgg ccgcgggcgc ggggacttcg
     3301 actgagacct tgtcggtttc gaggctggcg acgggctcgt cggccttcac cgcctcgccg
     3361 ggctttttca gccattcgcc gatggtcgcc tcggtaatcg actcgccgag tgtcgggacc
     3421 ttgatttcaa ctgccattta tctgtccttt aactggcggg cgcttgcttg ggcgccttgg
     3481 cactggtgcc cgcgccggat tgcgtccgcc ggatctcttc acgcacattg tggccgagag
     3541 catcggcaac gagcgcgccc tgttcgaatg catggcgctt ggcgaggccg gtcgccggcg
     3601 aggccgaagc ggcgcggccg gcatagcgtg gccgctcggg cttcacgccg gcttccttca
     3661 tgctggcctc gatccagggc tcgacgaaga accaggcgcc gttgttcttc ggctcttcct
     3721 gcgtccagac cacttcttcg aggttggcca tgcgctggag gcgtgcggtg agcggctcgc
     3781 ccgggaaggg atagagctgc tcgatccgga cgatggacgt gtgctggtcg cccgctgcat
     3841 cgcgcgcttc gatcaggtca taggctacct tgcccgagca gagcaccaac cgcttcacgt
     3901 cctggtcggc cggcccgctg gggtcggaca ggatgcgacg gaaatggctg gcgcccagga
     3961 aatcctcggc cgaggacacc gccatcttat gccgcagcag cgatttgggc gtgaagatca
     4021 ccagaggctt gcggaacggc cgcaacatct ggcggcgcag gatgtggaaa taattggccg
     4081 gcgtggtgca gttggcgacc tgcatattgt cctcggcgca gagctggaga tagcgctccg
     4141 gccgcgccga cgaatgctcc ggcccctgcc cttcgtagcc gtgcggcagg aacagcgcga
     4201 gatcgcacag gcgtccccac ttcgccatgc cggcggcgat gaactgatcg atcacgactt
     4261 gcgcgccatt ggcgaagtcg ccgaactgcg cttcccacat caccaaggtc ttcgggtcgg
     4321 cgagcgaata gccatattcg aagccgagca ccccgaactc gctcaagggg ctgtcgcgga
     4381 cctcgaaccg gccgccgccc tcgaccgtgg tcagcgggat atatttgtcg ccgctctgtt
     4441 gatcgaccca caccgcgtgg cgctggctga aggtgccgcg gccgctgtcc tggccggaca
     4501 ggcggacctg atagccttca tggaccaggc tgccgaaagc gagcgcctcc gccgtcgccc
     4561 agtcgaagcc ctcgcccgtc tcgaacatcg cccgccgcgc ctcgatgatc cgctgcagcg
     4621 tcttgtggac attgaggccg tcggggatgg tggtgaggat ccgccccacc tcgcggtagc
     4681 gctcct
//
LOCUS       DASQVK010000369         3273 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_371106,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000369 DASQVK010000000
VERSION     DASQVK010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3273)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3273)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3273
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_371106"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..370
                     /locus_tag="VE567_07995"
     CDS             <1..370
                     /locus_tag="VE567_07995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004211067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF969 family protein"
                     /protein_id="HYZ48820.1"
                     /translation="VSIAGHAQTVRPLVAPMAEAAAERDAELDEATRERVKAMAAATD
                     NVGVFFGEDIFIAMSSILLVVGFLDQNGIHVAPLQLSVWAIPSAGLALLIHGARLLWL
                     DRTLKNAIRHGSQPADGEDA"
     gene            367..1278
                     /locus_tag="VE567_08000"
     CDS             367..1278
                     /locus_tag="VE567_08000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004211062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HYZ48821.1"
                     /translation="MIGLSALYTFAGLVFAAYAVLSIARRRLGNAAFWGLLAASFLTG
                     DRFGDFGNGLLVLALVALAGTGALKKPDPGDQAEDGARLGNRLFLPALIIPATALAGT
                     FLLKDSGLIDPKQVTLVSLGLGVILALIVLYAWLRPPALAAVEEGRRLIDAVGWAAVL
                     PQMLASLGAVFAVAGVGDLVGGAAGQLIPKGNLLAAVAAYGIGMALFTMIMGNAFAAF
                     PVMTAAIGLPLLIHGFGGSPAIVCAIGMLAGFCGTLMTPMAANFNIVPAALLELKDRN
                     AVVKAQIGTALPLLLCNILLIYFLAFR"
     gene            1275..2258
                     /locus_tag="VE567_08005"
     CDS             1275..2258
                     /locus_tag="VE567_08005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014077995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HYZ48822.1"
                     /translation="MTQSLTPEIAARFAEIALGHVRREYPHKLDHVMDGPEDVQSPAR
                     LHPIFHGSFDWHSCVHGYWLLLRVRRQFPDLQVARRVEALADEMLIPAKVAGELAYLD
                     RAYSGGFERPYGWAWAIALWAEAARHGDRGWGEALHPLAAAFADKFKLYLPRLTYPIR
                     VGTHFNSAFALTLALEWPDEALQALIADKARGWFGQDRACQAWEPGGDEFLSPALSEA
                     LLMRRVLGNDFADWLADFLPRLEEGAPYTLLEPVFVSDRSDGKIAHLDGCNLSRAWCW
                     REIASALPAEPARIARRAADQHLVASLPYVSGDYMGEHWLATFALLALQAE"
     gene            2394..>3273
                     /locus_tag="VE567_08010"
     CDS             2394..>3273
                     /locus_tag="VE567_08010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HYZ48823.1"
                     /translation="MIERAFLFAAAWLGLAASVPAFALDRPPSLRDSFALGSDSGALC
                     QVESKGHDAAVATMFDRAWVIICRDAARPVGRLYGLRGSPEAVAARLATIRAGEARCE
                     GPAQPAEIQDLGSALRSECRLANADVGYRVYQLRKGDVVWVAEGLAGYDDALTLGLRT
                     VVQDRIVPGKIEVATTSANDPVAFARVQAGSLDPDRALAEGYRRNNAGAYAEAAEFFG
                     TLQERADISTDRTGEYLVNEALQKSNLGQFAEADRLFEEAMRIPSGDRVQTRLRRNFL
                     ALHLINQKKLKEALAEL"
BASE COUNT          486 a         1082 c         1117 g          588 t
ORIGIN      
        1 agtctcgatt gccggtcacg cgcagacggt gcgcccgctg gtcgcgccaa tggcggaagc
       61 cgctgccgag cgcgatgccg agttggacga agccacgcgc gagcgagtga aggcgatggc
      121 cgccgcgacc gacaatgtcg gcgtcttctt cggcgaggat atcttcatcg ccatgagctc
      181 gatcctgctg gtcgtcggct ttctcgacca gaacggcatc catgtcgccc cgctccagct
      241 ttcggtctgg gcgatcccga gcgccggcct cgcgcttctg attcatggag cgcgattgct
      301 ctggctcgac cggacgctga agaacgccat caggcacggc tcgcaaccag cggatgggga
      361 agacgcatga tcggcctctc cgctctttac acttttgcgg gcctcgtctt tgccgcctat
      421 gctgtgctca gcatcgcgcg gcggcggctg ggaaacgcgg ccttctgggg gctgctcgcg
      481 gcgagctttc tgaccggcga ccggttcggc gatttcggca acgggctgct ggtgctcgca
      541 ctggtcgcgc tggcggggac gggcgcgctc aaaaagcccg accctgggga tcaggccgaa
      601 gacggcgcgc ggctcggcaa ccggctgttc ctgccggcgc tgatcattcc cgcgacggcg
      661 ctggcgggca catttctgct gaaggattcg ggcctgatcg atcccaagca agtcaccctg
      721 gtctccctcg gccttggcgt gatcctcgcc ttgatcgtgc tctatgcctg gctgcgcccg
      781 ccggcgctgg cggcggtgga ggaagggcgg cggctgatcg acgcggtcgg ttgggccgcc
      841 gtgttgccgc agatgctggc gagcctgggc gcggtgttcg cggtggcagg cgtcggcgat
      901 ctggtgggag gcgccgcggg ccagctgatc cccaagggca atctgctcgc cgcggtcgcc
      961 gcttatggca tcggcatggc gctgttcacg atgatcatgg gcaatgcctt tgctgccttt
     1021 ccggtgatga cggcggcgat cggcctgccg ctgctgatcc acggcttcgg cggcagtccc
     1081 gcgatcgtct gcgcgatcgg catgctcgcc gggttttgcg gcacgctgat gacgccgatg
     1141 gccgccaact tcaacatcgt cccggccgcg ctgctggagc tcaaggaccg caacgcagtc
     1201 gtgaaggcgc agatcggcac ggcgttgccc ctgctcttgt gcaacatcct cctcatctat
     1261 ttcttggcgt tcagatgacc cagagcctca cccccgaaat tgccgcgcgc ttcgccgaga
     1321 tcgcgctcgg ccatgtccgc cgcgaatatc cgcacaagct cgatcatgtg atggacgggc
     1381 ccgaggatgt gcagtcgcct gcgcggctcc acccgatctt ccacggcagc ttcgactggc
     1441 acagctgcgt gcacggctat tggctgctgc tgcgggtgcg gcggcagttt cccgatctgc
     1501 aagtcgcgcg gcgggtcgag gcgctggccg acgaaatgct gattccggct aaggtggcgg
     1561 gcgagcttgc ctatctcgac cgcgcctatt cgggcgggtt cgagcggccc tatggctggg
     1621 cctgggcgat cgcactctgg gccgaggcgg cgcggcatgg agaccgcggc tggggcgaag
     1681 cgctccaccc gctagcggcc gcctttgccg acaagttcaa gctttatctt ccccgcctca
     1741 cctacccgat ccgcgtcggc acgcatttca actcggcctt cgcgctcacg ctcgcgcttg
     1801 aatggcccga tgaggcgttg caggcgctga tcgcagacaa ggcgcgcggc tggttcgggc
     1861 aagaccgcgc ctgccaggcg tgggagccgg gcggcgacga attcctctcg ccggcactgt
     1921 cggaagcgct gctgatgcgg cgcgtactgg gcaacgactt tgcggactgg ctggccgatt
     1981 tcctgccgcg cctggaggaa ggcgcgccct acaccttgct ggagccggtg ttcgtctccg
     2041 accgctccga cggcaagatc gcgcatctcg acggctgcaa tctaagtcgc gcctggtgct
     2101 ggcgcgagat cgcctctgct ttgccggcgg agccggcaag gatcgcacgc agggccgccg
     2161 accaacacct cgtcgccagc ctgccttatg tttccggcga ctatatgggc gagcattggc
     2221 tcgcgacctt cgcgctgctc gcgctgcagg cggaataggg taaaggctcg cgctcgcctc
     2281 tttcccttcc gcgctcaagc cgttacgatt gggcaaaccg aaaatcgggg cgcagtcata
     2341 acatcggcga gaacgtcgcg gcgggggccg cgcgctcgcc ttagggggaa tgaatgatcg
     2401 agcgcgcgtt cttgttcgcg gccgcatggc ttggcttggc ggcgtccgtc ccggcattcg
     2461 cgctggatcg gccgccaagc ctcagggaca gcttcgcgct gggttccgac agcggcgcgc
     2521 tctgccaggt cgaatcgaaa ggccatgacg cggccgtcgc gacaatgttc gaccgcgcct
     2581 gggtgatcat ctgtcgcgat gcggctcgcc cggtcggccg gctctatggc ctgcgcggca
     2641 gccccgaggc ggttgcggcg cggctggcga cgatccgcgc cggcgaagcg cgctgcgaag
     2701 gcccggccca gccggcggaa atccaggacc ttggcagcgc gctaagaagc gaatgccgtc
     2761 tcgccaatgc cgatgtcggc taccgggtct atcaactgcg caagggcgac gtggtctggg
     2821 ttgccgaggg gctggccgga tatgacgacg cgctgacgct cggcctgcgc accgtcgtgc
     2881 aggaccggat cgtgcccggc aagatcgagg tcgcgaccac cagcgcgaac gacccggttg
     2941 cgttcgcgcg cgtccaggcg ggctcgctcg atcccgaccg tgcgctggcc gagggctatc
     3001 gccgcaacaa tgccggtgcc tatgcagagg ccgccgaatt cttcggcacg ctgcaggagc
     3061 gggccgatat atccacggat cggaccggcg aatatctggt caacgaggcg ctgcagaaat
     3121 cgaatctcgg ccagttcgcc gaagccgacc ggctgttcga ggaagcgatg cgcatcccga
     3181 gcggcgaccg cgtgcagact cgtctgcgcc gcaactttct ggcgctccac ctgatcaacc
     3241 agaagaagct caaggaagcg ctcgccgagc ttg
//
LOCUS       DASQVK010000370         2401 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_213575,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000370 DASQVK010000000
VERSION     DASQVK010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2401
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213575"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..806)
                     /locus_tag="VE567_08015"
     CDS             complement(<1..806)
                     /locus_tag="VE567_08015"
                     /EC_number="1.2.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HYZ48824.1"
                     /translation="MNMIQAINSALDVLMDRDPDIVVMGEDVGYFGGVFRATAGLQKK
                     YGKTRVFDTPITELGIIGVAVGMGAYGLRPVPEIQFADYIYPGLDQLVSEAARLRYRS
                     AGEFTAPITVRSPFGGGIFGGQTHSQSPEGIFTHVSGVKTVIPSTPYDAKGLLIAAIE
                     DNDPVIFFEPKRIYNGPFDGHYDRPAKNWANHPDGEVPDDYYRIDLGKARIVRPGAEL
                     TILAYGTMVHVCAGVIEEQGIDAELIDLRTLLPLDIGAIEASVKKTGRCLV"
     gene            complement(815..2086)
                     /locus_tag="VE567_08020"
     CDS             complement(815..2086)
                     /locus_tag="VE567_08020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010545778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate dehydrogenase
                     (2-methylpropanoyl-transferring) subunit alpha"
                     /protein_id="HYZ48825.1"
                     /translation="MSTRPNLPPLRLHVPEPKFRPGDEADFSDILIPAAGATRRPAVE
                     EPPAEFHDLAFALVRVLDDDGRAIGPWDPKLSPDTLRAILKAMAKTRAFDERMYRAQR
                     QGKTSFYMKCTGEEAIACAQAHALHRDDMCFPSYRQQGLLIARDWPLIDMMNQIYSNK
                     GDRLQGKQLPVMYSTKSGSFFSISGNLATQMPQAVGWAMASAIKGDTRIAAAWCGEGS
                     TAEGDFHSACIFASVYRAPVILNVVNNQWAISSFSGFAGAEATTFAARAIGYGIAGLR
                     VDGNDALAVYAATEWAAERARTNQGPTLIEFFTYRAEGHSTSDDPTAYRSAREPEKWP
                     LGDPIGRLKQHLILIGEWDEERHAAMDLEVATEVKAAQKEAERNGVLGHGLHHPMSTM
                     FENVFETMPWHLEEQRQEMLAEARAAGIETT"
BASE COUNT          396 a          803 c          759 g          443 t
ORIGIN      
        1 accaggcagc ggccggtctt cttcacggag gcctcgatcg ccccgatgtc gagcggcagc
       61 agcgtgcgca ggtcgatcag ctcggcatcg atcccctgct cctcgatcac cccggcgcag
      121 acatgcacca tcgtgccata ggccaggatc gtcagctccg cgcccggccg cacgatccgc
      181 gccttgccaa ggtcgatccg gtaataatcg tccggcactt cgccgtcggg gtggttcgcc
      241 caatttttcg ccggccggtc gtaatgcccg tcgaacgggc cgttatagat gcgcttgggc
      301 tcgaagaaga tgaccggatc attgtcctcg atcgcggcga tcagcagccc cttggcgtca
      361 tacggggtcg acggaatcac tgtcttcacg cccgagacat gggtgaaaat gccttcgggc
      421 gactggctgt gcgtctggcc gccgaagatg cctccgccaa agggcgagcg gacggtgatc
      481 ggcgcagtga actcgcccgc cgagcgatag cgcagccgcg ccgcttcgga gacgagctgg
      541 tcgagccccg ggtagatgta atcggcgaac tggatttccg gcaccggccg caggccatag
      601 gcgcccatgc ccactgccac gccgatgatg ccgagttcgg tgatcggcgt atcgaacacc
      661 cgcgtcttgc cgtatttctt ctgcagccct gccgtcgcgc gaaacacgcc gccgaaatat
      721 ccgacatcct cgcccatcac gacgatatcc ggatcgcgat ccatcagcac gtcgagcgcc
      781 gagttgatcg cctggatcat gttcatccgg gccattacgt cgtctcgatc cctgcggcgc
      841 gcgcttcggc gagcatttcc tgcctttgct cttcgagatg ccagggcatc gtctcgaaca
      901 cattctcgaa catggtcgac atcgggtggt gcaggccgtg gcccagcacg ccgttcctct
      961 cggcttcttt ctgcgcggcc ttcacttcgg tcgcgacttc caggtccatc gcagcatggc
     1021 gctcctcgtc ccattcgccg atcaggatca aatgctgctt gagccggccg atcgggtcgc
     1081 ccagcggcca tttctcaggc tcacgggcgg agcgataggc ggtcgggtcg tccgaggtcg
     1141 aatggccctc ggcgcggtag gtgaagaact cgatcagcgt cggcccttga ttggtgcgcg
     1201 cgcgctcggc cgcccattcg gttgcggcat agacggcgag cgcgtcgttg ccgtccaccc
     1261 tgaggccggc aatgccatag ccgatcgccc gcgccgcgaa ggtcgtcgcc tccgcaccgg
     1321 cgaagcccga gaagctcgaa atcgcccatt ggttgttgac gacgttcagg atcaccgggg
     1381 cgcgatagac cgaggcgaaa atgcaggcgg aatggaagtc gccctcggcg gtcgaacctt
     1441 cgccgcacca ggccgcggcg atgcgggtgt cgcccttgat tgcagaggcc atggcccagc
     1501 ccacggcctg cggcatctgc gtcgccaagt taccggaaat gctgaagaaa ctgccggact
     1561 tggtcgaata catgacggga agctgcttgc cctgcagccg gtcgcccttg ttcgaataaa
     1621 tctggttcat catgtcgatg agcggccagt cgcgtgcgat cagcagccct tgctggcgat
     1681 agctcggaaa gcacatatcg tcgcggtgaa gcgcatgcgc ctgggcgcag gcgatcgcct
     1741 cctcgccggt gcacttcatg tagaagctgg tcttgccctg gcgctgggcg cgatacatgc
     1801 gctcgtcgaa cgcgcgggtc ttggccatcg ccttcaggat cgcgcgcagc gtgtcgggcg
     1861 acagcttcgg gtcccagggg ccgatggcgc ggccgtcatc gtccagcacg cgcaccagcg
     1921 cgaaggcgag atcgtgaaac tcggccggcg gctcctccac ggccggccgt cgcgtggcgc
     1981 ccgcggcggg gatgaggatg tcgctgaaat cggcctcgtc gcccggccgg aacttaggct
     2041 cggggacgtg cagccgcagc ggcggcaggt tgggacgggt ggacatcctc tctccagatt
     2101 cgggctgaac gccctttgcc gccattgtta taaaatttca aagcctgtcg cgagtctccc
     2161 aagccgtcgc ttcattgctg catccgctaa cgccggtgaa accgagaggc ttcatccgcg
     2221 tttgtaagct tatgttcagc ttgcgcaccg ccgaaacgac cgtcgccgct ccggcaaggt
     2281 ccgctcccaa gcccgccccg tccacgccgc gcgacctggt cgccgtgatg ctgcgcgccg
     2341 cggacaagct gcagtcgcaa cccggccttg gcagcgcacg gctgctgctc gaacgttccg
     2401 g
//
LOCUS       DASQVK010000371         4392 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_339943,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000371 DASQVK010000000
VERSION     DASQVK010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4392)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4392
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339943"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..357
                     /locus_tag="VE567_08025"
     CDS             <1..357
                     /locus_tag="VE567_08025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019053734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HYZ48826.1"
                     /translation="LPVAALIGPDGARAPRKEAVVHPPQATPGLTAVIAEASVGDYRA
                     GDEIWCERLAPDHFAAALNRDILVPRPAGRFAFGRLLGREDGKIHVLPLGAGARQQVY
                     ADPAWIARAVRLVRTL"
     gene            478..1176
                     /locus_tag="VE567_08030"
     CDS             478..1176
                     /locus_tag="VE567_08030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006951439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HYZ48827.1"
                     /translation="MRMIRVASYNMRKAIGTDRRRNPERVIEVLNEIGADVVALQEAD
                     RRFGERCSALPAHLLEEHSAYRPVLLPHRTGGIGWHGNAILVRRDVDIGCCEALHIPA
                     LEPRGAVMAELRLNGTPLRVVGMHLDLSGLWRRRQSRAILHRVEQGAPMPTVMMGDLN
                     EWTVHGGCLRDFDRHYAFAPTGRSFHARRPVAALDRIMFAGLKLLDCGVHLSPTSRRA
                     SDHLPIWAEFASTG"
     gene            1201..3489
                     /locus_tag="VE567_08035"
     CDS             1201..3489
                     /locus_tag="VE567_08035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like protein"
                     /protein_id="HYZ48828.1"
                     /translation="MREKELRLALICYGGISLAVYMHGITKEIWRLARASRAYHDGRF
                     CTGALEVYRQLIERVETHAGLRLTVFSDIIAGASAGGINGIFLAQAIATGQSLDPLTS
                     LWLETADVERLIDPVARATRLSKLWAIPIAMLVNRDGEALESVDPDTRAEVGRKLSTF
                     VRSRWFEPPFGGEVFSGLLLDAFEAMAATAAGPPLLPDDQPLDLFVTVTDFRGHPQRL
                     RLNSPPEVVETEHRLTVSFTDRGGPERVLGATAELAFAARATASFPGAFPPFTVGELD
                     SVVAARGMDWPGRDHFLERTLPRHFAAGIAESAVLIDGSVLSNAPFQPAMGALKNRSA
                     RREIDRRFVYIDPKPGIRSIRIGGVKREAPGFFTTILAALSEIPREQPIRDNLEALQG
                     RSERIARIRRVIDALQDEVDEVIVQLFGGTFFLDRPTPARIAAWRSRAQGEAAKRAGP
                     AYAAYGHLKVSGIVEELADLVRRLTPRGVGPTRSQAREAIWAELQRRGLDRVTDPGRG
                     ATPAAIAFFREHDLGFRIRRLRFLARKLSTLQDENEAIAPACEAFERTIYKVLSFYLE
                     REVAGFYGGDVVALASAIQQEPGAAIDAIGAARDLRRIDDEADQMLSAALAELPRAEK
                     RAMLFAYLGFAFYDLATLSLMGEGEGEFDRVKVDRISPDDATSIREGGAEATLKGIRF
                     NSFGAFFSRAYRENDYLWGRLHGADRLVDIVLSTLPTHRTLPPGMAAELKRALFRAIL
                     EEEESRLTAIPRLFDQLRTEIV"
     gene            3548..3868
                     /locus_tag="VE567_08040"
     CDS             3548..3868
                     /locus_tag="VE567_08040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48829.1"
                     /translation="MSFLKTLFWIVVAVIVALFCFNNWTVVDVNLWNGMILETKLPIL
                     LGLFFLLGLLPPLLLWQATRYRLRRRMQQEAGLLIVPPPSPAPVVEPAGPAGPISAVP
                     PGGA"
     gene            3865..>4392
                     /gene="pyrF"
                     /locus_tag="VE567_08045"
     CDS             3865..>4392
                     /gene="pyrF"
                     /locus_tag="VE567_08045"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010408275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HYZ48830.1"
                     /translation="MKGPIYVALDTPDIERAKAIAARVHNHVGGIKLGLEFFAANGRS
                     GIKEMAQLGLPIFLDLKLHDIPNTVAKAVQALRDLEPAVLTVHAAGGRAMMEDAKAAA
                     PSGTKVVAVTVLTSLDGNDLGSIGLDSDPSAQVERLTALAREAGLDGVVCSGAEVKAA
                     RKLWPGGFFVVPGVRP"
BASE COUNT          642 a         1526 c         1481 g          743 t
ORIGIN      
        1 ctgccggtcg ccgcactgat cggccccgac ggcgcgcgcg ccccgcggaa ggaagcggtt
       61 gtgcatcccc cgcaggcgac gcctggcctc actgcggtga tcgccgaagc gtcggtgggc
      121 gattatcgtg cgggcgatga aatctggtgc gagcggctcg cgcctgacca tttcgcggca
      181 gcgctcaatc gcgacatact cgtcccccgc cccgccggcc gcttcgcctt cggccggttg
      241 ctggggcgcg aagacggcaa gatccatgtg ctgccgctgg gcgcgggcgc gcgccagcaa
      301 gtctatgccg atcccgcctg gatcgcgcgc gcggtgcggc tggtgcggac tctgtagtgc
      361 ggcgcgccgg cgcgaaccgg ctcgccactt cggacgcgcg agtggagacg gcgccgtagc
      421 ggcagcccat gggtcgcgcc aaggccgttg ctggtctgcg tcctgcactt taggtgcatg
      481 cgcatgatcc gcgtcgccag ttataatatg cgcaaggcca tcggcaccga ccgccggcgt
      541 aatccggagc gggtgataga agtgctgaac gagatcgggg cagacgtggt ggcccttcag
      601 gaagcggatc gccgcttcgg cgaacggtgc agcgcgctgc ccgcgcatct gctcgaagag
      661 catagcgcct atcgcccggt cctcctgccc catcgcaccg gcggcattgg ctggcacggc
      721 aacgcgatcc tggtgcgccg cgacgtggac atcggctgct gcgaggcgct gcatatcccg
      781 gcgctcgagc cgcgcggcgc ggtcatggcc gaactccgcc tgaacggcac tccgctgcgc
      841 gtggtcggca tgcatctcga tctgtccggg ctgtggcggc ggcggcagag ccgggcgatt
      901 ctccaccggg tcgagcaggg cgcgccgatg ccaaccgtga tgatgggcga cctcaacgaa
      961 tggaccgtgc atggcggctg cctgcgcgat ttcgaccgcc attacgcctt cgctcccacc
     1021 ggccgcagct ttcacgcccg gcgccccgtc gcggcgctcg accggatcat gttcgcgggg
     1081 ctcaagctgc tcgattgcgg cgtgcatctc agccccacct cgcgcagggc gtccgatcat
     1141 ttgccgatct gggcggagtt cgcctcgaca ggctgaccat tctccgccac cctgccggcc
     1201 atgcgggaga aggagctgcg gctggcgctg atctgttatg gcggcatcag cctggccgtt
     1261 tacatgcacg gcatcaccaa ggagatctgg cgcctcgccc gcgccagccg cgcctatcac
     1321 gatggccgtt tctgcaccgg cgcgctggaa gtgtatcgcc agctgatcga gcgggtcgag
     1381 acgcatgccg ggctgcggct caccgtcttt tcagacatca tcgcgggcgc cagcgccggt
     1441 ggcatcaacg gcattttcct cgcccaggcg atcgcgaccg gccagtcgct cgacccgctc
     1501 accagcctct ggctcgaaac cgccgatgtg gagcggctga tcgatccggt agcccgggcg
     1561 acgcgcctct cgaagctttg ggcgatcccg atcgccatgc tggtcaaccg cgacggcgaa
     1621 gcgctcgaaa gcgtcgatcc ggatacccgt gcggaagtgg gccgcaagct ctccaccttc
     1681 gtgcgctcgc gctggttcga gccgccgttc ggaggcgagg tgttctccgg cctcctcctc
     1741 gacgcgttcg aagccatggc ggcgaccgcg gcgggccccc cgctcctccc cgacgaccag
     1801 ccgctcgacc tgttcgtgac cgtcaccgat tttcgcgggc atccgcagcg gctgcggctc
     1861 aacagcccgc cggaagtcgt cgagacggag caccggctga ccgtgagctt caccgatcgg
     1921 ggcgggccgg agcgcgtgct gggggccacg gccgaattgg ccttcgcggc gcgcgccacg
     1981 gcaagctttc cgggcgcttt cccgccgttc acggtgggcg aactcgacag cgtggtggcg
     2041 gcgcggggca tggactggcc cggccgcgat cacttcctcg aacgcacgct gccgcgccat
     2101 ttcgctgccg gcatcgccga atcggcggtg ctgatcgacg ggtcggtgct gtcgaacgcc
     2161 ccgttccagc cggcgatggg cgcgctcaag aatcgctccg cgcggcggga gatcgaccgg
     2221 cggttcgtct atatcgatcc caaacccggc attcgcagca tccggatcgg tggcgtcaag
     2281 cgcgaggcgc cgggcttttt cacgacgatc ttggccgctc tgtccgaaat cccgcgcgag
     2341 cagccgatcc gcgacaatct ggaagcactc cagggccgct ccgagcggat cgcgcggatc
     2401 cggcgcgtga tcgacgcgct gcaggacgaa gtcgacgaag tgatcgtcca gctgttcggc
     2461 ggcacgttct tcctcgaccg ccccacgcct gcgcggatcg ccgcctggcg gtcgcgcgcg
     2521 cagggcgaag ccgccaagcg cgccgggccc gcctatgccg cttatgggca tctgaaagtc
     2581 tcgggcatcg tggaggagct tgcggacctt gtccgccgtc tcaccccgcg cggcgtgggg
     2641 ccgacccgca gccaggcgcg cgaggcgatc tgggccgagc tgcagcgccg cgggctcgac
     2701 cgcgtcaccg atcccggccg cggcgcgacg ccggccgcga tcgctttctt tcgcgagcac
     2761 gacctcggct tccgcatccg ccgtttgcgc ttcctcgcgc gcaagctctc gaccctccag
     2821 gacgagaatg aagcgatcgc gccggcgtgc gaggcattcg agcggacgat ctacaaggtc
     2881 ctgtccttct atctggagcg cgaagtcgcc ggcttttacg gcggcgatgt cgtcgcgctg
     2941 gccagcgcca tccagcagga acccggcgct gcaatcgacg cgatcggggc agcgcgggac
     3001 ctcaggcgga tcgacgacga agccgaccag atgctctctg cggccctggc cgaactcccc
     3061 agggccgaga agcgcgcgat gctcttcgct tatctcggct ttgcctttta cgatctcgcc
     3121 accctgtcgc tgatgggcga aggcgaaggt gagttcgacc gggtgaaggt cgatcgcatc
     3181 tcgcccgacg atgcgaccag cattcgcgag ggcggcgccg aagccacgct caagggcatt
     3241 cgcttcaaca gcttcggcgc tttcttcagc agggcctatc gggagaatga ctatctctgg
     3301 ggccggctgc acggcgccga ccggctggtc gatatcgttt tgtccaccct gccgacgcac
     3361 cggacgctgc cgccaggcat ggctgcggaa ctcaagcgcg ccctcttccg tgccatcctg
     3421 gaagaggagg agtcgcggct gaccgccatc cctcgcctgt tcgatcagct ccgcaccgag
     3481 atcgtttagg gtgtgtaccc agtagccacc ctagcgttac accgatggac gccttaaggt
     3541 cggcgccatg tcgtttctga agaccctgtt ctggatcgtc gtggcggtca tcgtcgcgct
     3601 gttctgcttc aacaattgga cggtcgtcga cgtcaatctg tggaacggca tgatcctgga
     3661 aaccaagctg ccgatcctgc tcggcctctt cttcctgctg ggcttgctgc cgccgctgct
     3721 gctctggcag gcgacgcgct atcggctgcg gcggcggatg cagcaggaag ccggtttgct
     3781 gatcgtgccg cctccctccc ccgcgccggt ggtcgagcct gccggtcctg ccgggccgat
     3841 cagcgcggtg ccgccggggg gcgcatgaag ggcccgatct atgtcgcgct cgacacgccg
     3901 gacatcgagc gcgccaaggc tattgcggcc cgggtccaca accatgtcgg cgggatcaag
     3961 ctcggcctcg aattcttcgc cgccaacgga cggtcgggca tcaaggaaat ggcccagctc
     4021 gggctgccga tcttcctcga cctgaagctt catgacatcc ccaacaccgt cgccaaggcc
     4081 gtgcaggcat tgcgcgacct tgagccagcg gtgctgaccg ttcacgcggc cggcggccgg
     4141 gcgatgatgg aggatgccaa ggccgccgcg cccagtggca ccaaagtggt cgccgtgacc
     4201 gtgctcacca gcctggacgg taacgatctg ggctccattg gcctcgattc cgacccgagc
     4261 gcccaggtcg aaaggctgac ggcgctggcg cgcgaggcgg ggctcgacgg cgtggtctgc
     4321 tcgggcgcgg aagtgaaagc ggcgcgcaag ctctggccgg gcgggttctt cgtcgtgccc
     4381 ggggtgcgcc cg
//
LOCUS       DASQVK010000372         2130 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_276918,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000372 DASQVK010000000
VERSION     DASQVK010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2130
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_276918"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..184)
                     /locus_tag="VE567_08050"
     CDS             complement(<1..184)
                     /locus_tag="VE567_08050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48831.1"
                     /translation="MTSATFSASDAYTVFWDEAGSSADGAGGVAATRGDVVTGDVVGA
                     GLGVGDEVGDGVGLGLG"
     gene            282..1013
                     /locus_tag="VE567_08055"
     CDS             282..1013
                     /locus_tag="VE567_08055"
                     /inference="COORDINATES: protein motif:HMM:NF013466.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HYZ48832.1"
                     /translation="MNTGSGTLVGTAASTAIRTTTLNGQTGVVQSTYHISSSTDPQIS
                     PADGAFYLSNYASVVRLTYAEFGAWSVNATPTAPIATYQGVYAGAKPGGARTPAESMP
                     RSGSATFAGGAAGYLGQASGTPADTASGTFYGAATLTANFASNSISGSVTDITVYRRG
                     AQNKTVIGTANDVFLTGTISGAIFTGTATAGTTPGSAYDLGGATGAVAGAFFGPAADE
                     AAGTFSLFGGPRGASMVGSFGAKRQ"
     gene            complement(1054..>2130)
                     /locus_tag="VE567_08060"
     CDS             complement(1054..>2130)
                     /locus_tag="VE567_08060"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HYZ48833.1"
                     /translation="EGADVVVELIGGADGPALALARNSIAAGRAFVTANKAMIAHHGL
                     ELAEAAEAKGVALKYEAAVAGGIPVIKGLREGAAANELAHVYGILNGTCNFILTTMEA
                     EGRGFAEVLAEAQALGYAEADPSFDIDGVDAAHKLAILASLAFGTKLDFGSVAITGIR
                     HVLAADIAEAAALGFKIRLLGYAETLGDGLFQRVHPHLVPVSHPLAHVSGSLNAVVAE
                     GNFVGRLLFEGRGAGDGPTASAVVADLIDIARGEYGPAFAMPVAALAERPAADCGERR
                     GRAYLRFTVEDKVGVLAEIAAAMRDSNVSIESLIQRGVLDDGSVLVAIVTHEGPERNI
                     AKALERLEGSPSIRGKPMLMHILD"
BASE COUNT          352 a          741 c          684 g          353 t
ORIGIN      
        1 ctccgagccc gagtccgacc ccgtcgccaa cctcgtctcc gactccgagc cccgcgccga
       61 cgacatcgcc cgtgacgacg tcgcctctgg tcgcggcgac gccgcccgct ccgtccgccg
      121 agcttccggc ttcgtcccag aagacagtgt atgcgtccga ggcgctgaac gtggcgctcg
      181 tcaatgatag tccgcaggtg tcggcgcctg cttcgccttc agcgcgccta gacactggcg
      241 tcgtgaatga aaacgggtcc agcctcacgc agacgacggt cttgaacacg ggcagcggca
      301 ctctggtcgg gacggccgca agcactgcaa tccgaaccac cacgcttaac ggccagacgg
      361 gtgtggttca gtccacctat catatttcgt ccagcaccga tccgcagatc tcgcccgccg
      421 acggggcatt ttacctgtcc aactacgcgt cggttgtccg gctgacctat gccgagtttg
      481 gcgcgtggag cgtaaatgcc actcctacgg ctcccattgc gacgtatcag ggcgtctatg
      541 ccggcgcaaa gccggggggc gcgcggacgc cggctgagtc gatgcccaga agtggctcgg
      601 cgacctttgc cgggggagcg gcgggctatc tgggccaggc aagcggcacg cccgctgaca
      661 ctgcgagcgg aactttctac ggcgccgcaa ccctgaccgc caacttcgcg tcgaacagca
      721 tcagcggatc ggtcaccgac attaccgtct atcgccgcgg cgcacagaac aagacggtga
      781 tcggcactgc gaacgacgtt ttcctgacgg gcacgatctc cggggcgatc ttcaccggaa
      841 ccgcaaccgc gggcacgact ccgggcagcg cctatgatct cggcggcgcc accggcgcag
      901 tagccggcgc tttcttcggc ccggcggcgg acgaagcagc cggcacattc tctctgtttg
      961 gcgggccacg cggcgcctcg atggttggct cgttcggggc gaagcggcaa tagcttcctc
     1021 gatcgtcacc taggtcgagg tcgaggagcg gggtcaatcg aggatatgca tcagcatcgg
     1081 cttgccgcgg atgctggggg agccttcaag ccgttccaat gccttggcga tattgcgctc
     1141 cgggccttcg tgggtgacga tcgcgaccag caccgagccg tcgtccagca ccccgcgctg
     1201 gatcaggctt tcgatagaga cattcgaatc gcgcatcgcc gccgcaatct cggcgagcac
     1261 gccgaccttg tcctcgacgg tgaagcgcag ataggcgcgc ccacgccgct cgccgcaatc
     1321 ggcggctggg cgttcggcta gcgctgcgac cggcatggcg aaggcggggc catattcgcc
     1381 gcgcgcaatg tcgatcaggt cggcgacgac ggcgctagcg gttgggccgt cgcccgcgcc
     1441 gcgcccttcg aacagcagcc gcccgacgaa attgccctcc gccaccaccg cgttcagcga
     1501 gcccgacaca tgggcgagcg gatggctgac cggcaccaga tgcgggtgga cgcgctggaa
     1561 cagcccgtct ccaagcgttt cggcatagcc gagcaggcgg atcttgaagc ccaacgccgc
     1621 cgcttcggcg atgtcggcgg cgagcacgtg ccggatgcct gtgatcgcga ccgaaccgaa
     1681 atccagcttc gtcccgaagg cgaggctggc gaggatcgcg agcttgtgcg ccgcatccac
     1741 gccgtcgatg tcgaagctcg gatcggcctc ggcataaccg agcgcctggg cctcggcgag
     1801 aacttcggca aagccgcgcc cttccgcttc catcgtcgtc aggatgaaat tgcaggtgcc
     1861 gttcaggatg ccatagacgt gcgccagctc attggctgcg gcgccttcgc gcaggccctt
     1921 gatcaccgga attccgccgg cgacggccgc ctcatatttg agcgcgacgc ctttcgcctc
     1981 cgcggcttcg gcgagttcga ggccgtgatg cgcaatcatc gccttgttgg cggtgacgaa
     2041 tgcccgcccg gcggcgatgc tgttgcgggc gagcgccagc gccggcccgt ccgccccccc
     2101 gatcagctcg accacgacat ccgcgccctc
//
LOCUS       DASQVK010000373         2989 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_118729,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000373 DASQVK010000000
VERSION     DASQVK010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2989)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2989)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2989
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118729"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(144..527)
                     /gene="rplL"
                     /locus_tag="VE567_08065"
     CDS             complement(144..527)
                     /gene="rplL"
                     /locus_tag="VE567_08065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007687446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HYZ48834.1"
                     /translation="MADLQSLVDQLSSLTVLEAADLSKMLEEKWGVSAAAAVAVAAPA
                     GGAGGAAAPAAEEKTEFDVILVNDGGKKINVIKEVRAITQLGLTEAKALVEGAPKAVK
                     EGVNKDEAEKLKKQLEEAGATVELK"
     gene            complement(553..1068)
                     /gene="rplJ"
                     /locus_tag="VE567_08070"
     CDS             complement(553..1068)
                     /gene="rplJ"
                     /locus_tag="VE567_08070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HYZ48835.1"
                     /translation="MDRAQKAELVEELSNTFSATGVVVVTRNLGLTVKQSTDLRNKMR
                     DAGASYQVAKNRLARIAIQGTPYASIGTMLTGPTGLAYSNDPVAAAKVAVDFAKTNDK
                     FEIVGGSMGETVLDPAGITALASLPSLDELRAKIVGLIQAPATKLAQIAQAPAAQLAR
                     VFGAYAAKEDA"
     gene            1384..2304
                     /locus_tag="VE567_08075"
     CDS             1384..2304
                     /locus_tag="VE567_08075"
                     /inference="COORDINATES: protein motif:HMM:NF016705.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-binding protein"
                     /protein_id="HYZ48836.1"
                     /translation="MADEPVPAKPRARRAKADKPAEPKAAKPRAKNAAAASAQPAVTK
                     PKAGPPKTPAKPRKAASPKEEKASAKPRAPRKASAGAAAPSVPATPPPPPAAAAAPER
                     ASAPTRVGPIVAAAGALAAIGGAVFLWRASRADQPDYQVVESDGPIEIRKYPALVTAA
                     AIARGERKAALDQGFRQLVDYLAARSRPGKKLAMIAPVLADEDDGVWRTRFIMPLGTA
                     RAQLPVAPEGIELASEPARRVAAMRFSGRADDAMLEAKEGALRSWLQLRGLPSEGKAA
                     YAFYNAPVTPGRLRRNEVLITLSDEGGTGA"
BASE COUNT          495 a         1003 c          982 g          509 t
ORIGIN      
        1 ggcggcaggg gagataggga catggtgtcg gccggccgca gccattcgcg aaggcgataa
       61 cgacggcatc gcccgcgttc gcctgaacga gaaaggggca gcccgtcgcc ggaccgcccc
      121 ttccttcgta ttgaagctga agcttacttg agttcgacgg tcgcgccggc ttcctcgagc
      181 tgcttcttga gcttctcggc ttcgtccttg ttcacgcctt ccttgacggc cttcggcgcg
      241 ccctcgacaa gggctttcgc ctcggtcagg ccgagctggg tgatcgcgcg gacttccttg
      301 atcacgttga tcttcttgcc gccgtcattg acgaggatga cgtcgaactc ggtcttctct
      361 tccgcagccg gagcagcggc gccgccagcg ccgccggccg gagcggcaac ggcgaccgca
      421 gcagcggccg agacgcccca cttctcttcg agcatcttcg acaggtcggc ggcttcgagc
      481 acggtgaggc tcgagagttg atcaacgagg gactgaaggt ctgccatttt gagtctccaa
      541 atctaaaggg tcttaagcgt cttctttggc ggcgtaggcg ccgaacacgc gcgcgagctg
      601 ggcggccggg gcctgagcga tctgcgcgag cttggtcgcg ggcgcctgga taaggcccac
      661 gatcttggcg cgcagctcgt ccagcgacgg cagcgatgcg agcgcggtga ttcccgccgg
      721 atccaggaca gtctcgccca tcgacccgcc gacgatctcg aatttgtcgt tcgtcttggc
      781 gaaatcgacg gccaccttgg cggccgcgac cggatcgttg gaataggcaa ggccggtcgg
      841 cccggtcagc atcgtgccga tgctggcata gggcgtcccc tggatagcga tcctggccag
      901 gcggttcttc gccacctgat agctggcgcc ggcgtcgcgc atcttgttcc gcaaatcggt
      961 ggactgcttg acggtcagac ccaggttgcg agtcacgacc accacgcccg tggcggaaaa
     1021 agtgttgctc agctcttcga ccagctctgc tttttgagct cgatccatgc cattctcctt
     1081 tgtgacgcac ggaaaaagct ccgtgcgccg gctcacttgg tccgagggga atggttcaaa
     1141 cggggcttgc tgcccggcgc gtaaaggcgc ggaagcggcg gcagacccga aatctcttcc
     1201 ccgtctaggc tggagattaa gctcctgaga gcgccagctg tctcggacgg ttttcgactg
     1261 gggcgaaccc cgatcgaagc gcgcgcctat agcggcttcg gccgccgcgt caagacaatg
     1321 cggaacggct ggcgaaatcc gctcgttcgg ttaagaccga aacgaaaagc cagggaggac
     1381 catatggccg acgaacccgt cccagccaag ccgcgcgccc gccgcgccaa ggcggacaag
     1441 cctgccgagc cgaaggcggc caagccgcgc gcgaagaacg ccgccgcggc gtcggcgcaa
     1501 ccggccgtga caaagccgaa ggccgggccg cccaagactc cggcgaaacc gcgcaaggca
     1561 gcctcgccca aggaggagaa ggcgtcagca aagccgcggg cacctcgcaa ggcgtctgcg
     1621 ggggcggctg ctccgtctgt tcccgctaca ccgccgcctc cacctgccgc cgcggccgct
     1681 ccggagcggg cttccgcgcc gacccgagtc ggccccatcg tcgccgcggc gggcgcgctc
     1741 gcggccattg gcggcgcggt cttcctctgg cgcgcctcgc gggccgatca gcccgattac
     1801 caagtcgtgg aaagcgacgg gccgatcgag atccgcaaat atccggccct cgtcaccgct
     1861 gcggcgatcg cacggggcga gcgcaaggcg gcgctggacc aaggctttcg gcaactcgtc
     1921 gactatctcg ccgcgcgctc ccggccgggc aagaagctgg cgatgatcgc ccccgtgctc
     1981 gccgatgagg atgacggcgt gtggcgcacc cgcttcatca tgccgctggg caccgcgcga
     2041 gcgcaattgc cggtcgcgcc cgaaggcatc gagctggcgt cggagccggc gcgccgcgtc
     2101 gcggcaatgc gcttttcggg gcgcgccgac gatgcgatgc tcgaagccaa ggaaggcgcg
     2161 cttcgctcct ggctgcagct gcggggcctg ccgagcgaag gcaaggcggc ttatgccttc
     2221 tataacgcgc cggtcacgcc gggtcggcta cgccgcaacg aggtgctgat aacgctgagc
     2281 gatgaaggcg ggacgggagc ctgagctccc cccatctcac tggcccggct gacccgcggg
     2341 cccgctgctc gactccgttg cgggcttagc agtgacggcg ggcttcggct tggttgctac
     2401 gcagatcttc ctgccctgaa cgagcgatcc cgtgtccatc agccgccggc aggccggttt
     2461 cggggcttcc gccttcggcg tcgcggctgg ctgattagca ttgggggcgc tatcgggcgc
     2521 gccggcgagc agcaggccag caaaaactcc aagcaacata gatggttgtc cctccctgtt
     2581 ggggctcgcc catagcagcg tgccgctccg tccaaaagag ggcagggcaa aaatccgttc
     2641 cgccgtggca atcaactcgc atcgcgcttc gggcgttctc ccccaggcaa gacaaggagc
     2701 gcgcttccca gcgtcgcggc gaagacgaac gaacgaaatg ccataagtca tccccctgtt
     2761 gatttcaggc aggtgcagaa tagccggcgt cgcaccgcct tgcaccatat gtttggtcca
     2821 ttctgcgcag gactcccgca tcggttctct tagaaccacg gcgagtgtcc ccgcagcggc
     2881 gcccggacgc gactaagact cgccgtcgtc acggccgcgc tcttgtttgg cgatgccgcc
     2941 ggcgggatta agatcgcttt cgcggtcgcc ctcgaacgtg ttctcgcct
//
LOCUS       DASQVK010000374         3563 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_340212,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000374 DASQVK010000000
VERSION     DASQVK010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3563
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_340212"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            159..842
                     /locus_tag="VE567_08080"
     CDS             159..842
                     /locus_tag="VE567_08080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HYZ48837.1"
                     /translation="MQDWTTLEAKLDAQGWALLPDRIGADICAALAVFWNDEPRFRSH
                     VHMARHGFGLGEYRYFTYPLPELVASLREQLYPPLAGIANRWAERMGQTRRFPDSHAV
                     FLESCRAAGQNRPTPLLLRYESGDWNALHQDVYGALVFPLQVAILLSEPGRHFEGGEF
                     VLTEQRPRMQSRAEVVPLGQGDAVVFPVRERPVRGGRGDYRVQMRHGVSRVRAGLRFT
                     LGIIFHDAP"
     gene            913..1410
                     /locus_tag="VE567_08085"
     CDS             913..1410
                     /locus_tag="VE567_08085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48838.1"
                     /translation="MRRAIGLSLLLLSACVAPQKVAPPPLPPQPAAKPVLPPPLPTDW
                     RDRPYTPGDWIYARSGALSEARYGEAGALPRLALTCDPRAGQVRLTWPGIAGGPLIVR
                     TSEGDATLQGISSNAGLQIVFAARDALLDRMAFSRGRFMLAAGAQEVILPPWPEVSRV
                     IEDCR"
     gene            complement(1711..2196)
                     /locus_tag="VE567_08090"
     CDS             complement(1711..2196)
                     /locus_tag="VE567_08090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2721 domain-containing protein"
                     /protein_id="HYZ48839.1"
                     /translation="MHDLPAISSIAQTIQLAIAPVFLLAGIGAFLNVLAGRLARVVDR
                     SRVLEELHARSEGEEHQRYVEELRIVDRRMRLCNTAIALIVTSAIIVCLLVALLFITR
                     LAGLPFREAVALAFVLGMAFLIAGLLLFLYEINVALSYLRVREELLERQERRRLWHRK
                     R"
     gene            complement(2303..3079)
                     /locus_tag="VE567_08095"
     CDS             complement(2303..3079)
                     /locus_tag="VE567_08095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HYZ48840.1"
                     /translation="MSIEPLYSVAGVFVGLLVGVTGVGGGSLMTPLLVLLFGFSPVTA
                     VGTDLLYASATKVAGTGVHGWRGTVDWRVVRRLASGSIPATLLTLAGLSIAKTRAEDI
                     GTVIATVLGVALVLTGVATLFRERIVKQLSGTFRGFDDRQIFWLTILLGMMLGALVTL
                     TSVGAGALGMTALLVLYPRFPVARLVGSDIAHAVPLTLIAGLGHWAMGSVDLGLLLSL
                     LIGSIPGIIVGSLLAARASDRLLVPILSIVLVIVGARLLM"
     gene            complement(3105..>3563)
                     /locus_tag="VE567_08100"
     CDS             complement(3105..>3563)
                     /locus_tag="VE567_08100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYZ48841.1"
                     /translation="AVGNPTLIAALTRVKSYLDYGAFTPIQAAAVAAINGPQDIVAAN
                     RELYRKRRDVLVESFGRAGWEIPPPRASMFAWAPLPPALAHLGSLEFSKQLLTHAGVA
                     VAPGVGYGEEGEGFVRIAMVENEQRIRQAARNVKRYLASMGVNTPTQHSA"
BASE COUNT          644 a         1178 c         1168 g          573 t
ORIGIN      
        1 agggcgcaac atggcctcaa cggaccgtcg tgtctcggcc tgggctattt cggctgtgcg
       61 aaggtttttt ccttggcctc taaggtccca aggcttggaa gcagtttgag cgcaagcggc
      121 ggggtgggag tccggctttc cgcatttagg gggagcggat gcaggactgg acgacacttg
      181 aagcaaagct cgatgcgcaa ggctgggcgc tgctgcccga ccggatcggt gcagacattt
      241 gcgcggcgct cgcggtgttc tggaacgacg agccccggtt tcgcagccat gtgcatatgg
      301 ccagacatgg gttcgggctg ggggagtatc gctatttcac ctatccgctg ccggagctgg
      361 tggcgtctct ccgcgagcag ctttacccgc cgctggccgg aattgcgaac cgctgggccg
      421 agcggatggg gcagacacgg cgctttcctg actcccacgc cgtgtttctg gagagctgcc
      481 gcgcggccgg acagaatcga ccgacgcccc tgctgctgcg ctacgagtcc ggcgattgga
      541 acgcgctcca tcaggacgtc tatggcgcgc tcgtcttccc gctgcaggtg gcgatccttc
      601 tttccgagcc gggccgccat ttcgaaggcg gcgagttcgt gctgacggag cagcgcccgc
      661 gcatgcaatc gcgggccgaa gtcgtgccgc tggggcaagg cgatgcggtg gtcttccccg
      721 ttcgcgagcg gccggtcagg ggcgggcgcg gcgactatcg cgtccagatg cggcacggtg
      781 tcagccgcgt ccgcgctgga ttacgcttta cgctcggcat catctttcac gacgctccct
      841 gaaccccatg gcggggttgc cagacaccgc cccgaccgcc attcggggag gcgcgtaccc
      901 aatggaggat gcatgcgtcg ggcgatcggg ctgtctcttc tcctgctttc cgcctgcgtt
      961 gcgccgcaga aagtcgcacc tcccccgctg cctccccagc cggcggcaaa gccagtgctc
     1021 ccgccgccgc taccgacgga ctggcgcgac cggccctata cgcctggcga ctggatatat
     1081 gcgcgcagcg gagcgctgag tgaggcgcgc tatggcgagg ccggcgcact cccccggctc
     1141 gcgctgacct gcgacccccg cgccggtcag gtccgcctca cttggcccgg cattgcgggg
     1201 ggaccgctga tcgtccgcac cagcgagggc gacgccactc tccagggcat aagcagcaac
     1261 gcgggcctcc agatcgtctt cgccgcgcgc gacgctctgc tcgaccgcat ggcgttcagc
     1321 cgcggccgct tcatgctcgc cgcaggagcg caggaggtga tcctgccgcc ctggcccgag
     1381 gtctcgcgcg tgatcgagga ttgccgctag ccggcgaagc agcgcaaccc gaccagaatc
     1441 gctcgaaaaa atttttcttg caagacttga tcgccgagtc gcgccgattc acattccgct
     1501 cgcgcgccaa ccggtgcgta ttggctttaa ctagcgaaag gaggtgatcc gatgtctcat
     1561 ggttcagcag agaggtcggt caagtccgtt cgggagctgc gcgcctgaag ggctgcagcc
     1621 gataagcttc cgggcggcca cttccggccg ctgaccatgt aaggggttgc cgggctgaca
     1681 aggcccggca acctttttca tttgcgcgct ctatcgcttt cggtgccaga gtcggcggcg
     1741 ctcctggcgc tccagcagct cctcgcggac gcggagataa ctcagcgcca cgttgatttc
     1801 gtaaaggaac agcagcaggc cggcgatcaa aaaggccatg cccagcacga aagcgagtgc
     1861 cacagcttcg cggaacggca ggccggcaag ccgggtgata aacagcagcg cgacgagcaa
     1921 gcagacgatg atcgcgctgg tgacgatcag cgcgatggct gtgttgcaga gccgcatccg
     1981 gcgatcgacg atccgcaatt cctccacata gcgctgatgc tcctcgccct cgctacgcgc
     2041 gtgcagctct tccagcaccc gcgagcggtc gacgacgcgg gcgaggcggc ccgccagcac
     2101 attcaggaac gcgccgatgc ccgccagcag gaagaccggc gcaatcgcca gctggatcgt
     2161 ctgcgcgatc gacgaaatgg cgggcaagtc atgcatggcc agaggattgg cccgggacca
     2221 caaagcgggt caagcatgct gggagccgcg gccttcttcc tcagctggaa gcccgcgtcc
     2281 gcggcggggg ctggatcgaa cgctacatca acagccttgc gccgacgatc accagcacga
     2341 tcgagaggat cggcaccaac aggcgatccg acgcgcgcgc tgcaagcagg ctgccgacga
     2401 tgatgccggg aatagagccg atcagcaggg acaggagcag gccgagatcg accgaaccca
     2461 tcgcccaatg cccgagccct gcaatcaagg tcaacgggac ggcatgggca atgtccgacc
     2521 ccaccaggcg cgccacggga aagcgcggat acagcaccag cagagcagtc atgccgagag
     2581 cgcctgcccc aacggaggtt aaagtgacga gcgcgcccaa catcatgccc agcaatatgg
     2641 tcagccagaa aatctggcgg tcgtcgaagc cccgaaacgt gccgctcagc tgcttgacga
     2701 tacgctcgcg aaacagggtg gcgacgccgg tcaggaccag ggccacacca agcacggttg
     2761 cgattaccgt tccgatatcc tcggcgcgcg tcttggcgat gctgagaccg gcgagcgtga
     2821 gcagagtggc cgggatgctc ccgcttgcga gccgccggac gacccgccaa tcgacagtgc
     2881 cgcgccagcc atgcacgccg gtccccgcaa ccttggtcgc cgaggcataa agcaggtcgg
     2941 tgccgacggc agtgacgggg ctgaagccga acaggaggac gagcagcggc gtcatcagcg
     3001 agccgccgcc gacgcctgtc acaccgacca gcagcccgac aaatacgccc gcgaccgagt
     3061 agagcggctc gatgctcatc gcctgtcctg ccggttcgcg cgaatcaggc ggagtgctga
     3121 gtgggcgtgt tgacgcccat gctggctaga tagcgcttaa cgttgcgcgc cgcctggcgg
     3181 atccgctgtt cattttcgac catggcaatg cgcacgaagc cctccccctc ttcgccatag
     3241 ccgactcccg gcgcgactgc gacccccgcg tgcgtcagca attgtttgga gaactcaaga
     3301 ctgcctaggt gcgcaagcgc cggcggcagc ggcgcccagg cgaacatcga agcgcgcggc
     3361 ggcgggattt cccagccggc gcggccgaag ctttcgacca gcacgtcgcg gcgctttctg
     3421 tagagctccc gattcgccgc gacgatgtcc tgcggaccat tgatcgcagc gaccgctgcg
     3481 gcctggatcg gcgtgaacgc gccataatcg agataggatt tcacccgcgt caacgccgcg
     3541 atcagtgtcg gattgccgac ggc
//
LOCUS       DASQVK010000375         3218 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_214110,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000375 DASQVK010000000
VERSION     DASQVK010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3218
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214110"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1125
                     /locus_tag="VE567_08105"
     CDS             <1..1125
                     /locus_tag="VE567_08105"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HYZ48842.1"
                     /translation="GTNGKTSSVELTRQLWRLAGHNAASIGTLGVTTAHDQVLTGLTT
                     PDIVTFLSNVAGLRREGVTHLSFEASSHGLDQHRTEGLPVRAAGFTNLSRDHLDYHGD
                     MHSYFAAKLRLFEEVVDEDGAAVVWADDGAHSDRVIQVSRARGLRVLTVGERGDALRL
                     QSRTPSRLGQELVIEADGKSYKVTLPLIGAYQAANACVAAGLVVATGGDVARTLDHLA
                     RVTPVRGRLERAAITRAGAPVYVDYAHTPDAIEAAAAALRPHTKGRLIIVFGAGGDRD
                     QGKRPEMGKAASQVADVVIVTDDNPRSEDPAVIRRDILAGAPDAREVPGRREAIAEAV
                     RTAGADDVVLLAGKGHEQGQIVGDRVLPFDDVTVARECAA"
     gene            1122..2507
                     /gene="murF"
                     /locus_tag="VE567_08110"
     CDS             1122..2507
                     /gene="murF"
                     /locus_tag="VE567_08110"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0047480 -
                     UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HYZ48843.1"
                     /translation="MSLWTSAEIARAVSGTPSADFAIEGVAFDSREVGPGDLFIALPG
                     ETTDGHRFVDQAFGQGAAGAIVSRPVAYPHILVTDTKAALDALGVAARARTQAVVVGV
                     TGSVGKTGTKEALYAAFDRIAPGRAHRSLKSYNNQTGVPLSLARMPRDARFGVFEMGM
                     NSRGEIAAHTRLVRPHIALVTAIAPAHIEHLGSIEEIARAKTEIFEGLEPGGTAIIPY
                     DSPQRDILLEAAHRFASRVLTFGVGRDADVRAMERVPSKGGGTLVTVQLPEAGLTMTV
                     GQPGEHWVSNALAVIAAVEAAGGDLAVAALALSELQAMPGRGARMQVPVLGGEALLID
                     ESYNANPASMRATLAVLGEEPATRRIAVLGAMRELGEHGPQLHADLAEPMAQANVDFA
                     LLVGEEMAPLAKALEGRVDFAHVAGAAAALDALKGRIGAGDAVLIKASNSVGLGRLVD
                     QLSAGALAGGD"
     gene            2512..>3218
                     /gene="mraY"
                     /locus_tag="VE567_08115"
     CDS             2512..>3218
                     /gene="mraY"
                     /locus_tag="VE567_08115"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004207962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HYZ48844.1"
                     /translation="MLYLIAEQLGFSGILNLVRYLSFRAGAAVATALLLGLIIGPKFI
                     GWLRLRQGKGQPIRTDGPQTHLAKRGTPTMGGLMILTALTASMLLWMDPRNPYVWSCL
                     AVTLGFGAIGFLDDWDKVRKASHAGVPGRVRLLLEFLIAGVAAWLIVRHNGANLWIPF
                     VAQPIADIGWFYIAFAAFTIVAFGNAVNLTDGLDGLATMPVIIASVAFMVITYLVGNA
                     KFAAYLGIPHVPGAGVLA"
BASE COUNT          484 a         1060 c         1133 g          541 t
ORIGIN      
        1 ggcaccaacg gcaagacctc gtcggtcgag ctgacgcgcc agctctggcg gctggcgggc
       61 cacaacgccg cgtcgatcgg cactttgggc gtgaccaccg cccacgatca ggtgctgacc
      121 gggctcacca cgcccgacat cgtcactttc ctttccaacg tcgccgggct taggcgggag
      181 ggcgtgacgc atttgtcgtt cgaagcgtcg agccacgggc tcgaccagca ccggaccgag
      241 gggttgccgg tgcgcgccgc cggcttcacc aatctcagcc gcgatcatct cgactatcat
      301 ggcgatatgc acagctattt cgccgccaag ctgcgtctgt tcgaggaagt tgtggatgag
      361 gacggcgccg cggttgtctg ggccgacgat ggcgcgcatt cggatcgcgt gatccaggtc
      421 tctcgcgcca ggggactgcg tgtgctgacg gtcggcgagc gcggcgacgc gttgcggctg
      481 caaagccgca cgccttcgcg cctgggccag gaattggtga tcgaggcgga cggcaagagc
      541 tacaaggtta cgctcccgct gatcggcgca taccaggcgg ccaacgcctg cgtcgcggcc
      601 gggctggtgg tcgcgacggg cggtgacgtc gcgcgcacgc tcgaccatct ggcgcgggtg
      661 acgcccgtgc gcggccggct cgaacgcgcg gcgatcacgc gcgcgggcgc gccagtctat
      721 gtcgattatg cgcacacgcc ggacgcgatc gaggctgcgg cggcggcgct ccgcccccac
      781 accaagggtc ggctcatcat cgtgttcggc gcgggcgggg accgcgacca gggcaagcgc
      841 cccgaaatgg gcaaggccgc ttcgcaagtc gcggacgtcg tgatcgtgac ggacgacaat
      901 ccgcgcagcg aggatccggc cgtgatccgc cgcgacattc tcgccggtgc tcccgacgcg
      961 cgcgaggtcc ccggccggcg cgaagccatt gccgaagcgg tgcggaccgc gggcgccgac
     1021 gacgtcgtgc tgctcgccgg caaggggcac gaacagggtc agatcgtcgg cgatcgagtg
     1081 ctgccgttcg acgatgtgac cgtggcgcgg gaatgcgcgg catgagcctc tggacctccg
     1141 ccgagattgc ccgcgccgtc tccggtacgc cctctgccga tttcgctatc gagggtgtcg
     1201 cgttcgactc ccgtgaagtc gggcccggcg atctgttcat cgcattgccg ggcgagacta
     1261 ccgacgggca tcgcttcgtc gatcaggcgt tcgggcaagg cgctgcgggc gcgatcgtca
     1321 gccggcccgt tgcttatccg cacattctcg tcactgatac caaggctgcg ctggatgccc
     1381 ttggggttgc ggcgagggcg aggacgcagg ccgtggtggt cggcgtcacg gggtcggtgg
     1441 gcaagaccgg gacgaaagag gcgctctacg cggcattcga ccgcatcgcg cccggccggg
     1501 ctcaccgatc gctgaagagc tacaacaacc agaccggcgt gccgctgagc cttgcgcgca
     1561 tgcccaggga cgcgcgcttc ggcgtgttcg aaatgggcat gaacagccgc ggcgagatcg
     1621 cggcgcatac ccggctcgtg cggccacaca tcgcactcgt caccgcgatc gcgccggcgc
     1681 atatcgagca tctgggctcg atcgaggaaa tcgcgcgcgc caagaccgaa attttcgaag
     1741 gactggagcc gggcggcacg gcaatcatac cctatgattc cccgcagcgc gacattctgc
     1801 tggaagcggc gcatcgtttc gcttcccgcg tgctcacttt cggcgttggc cgagacgccg
     1861 atgtgcgcgc gatggagcgg gtgccgtcca aggggggcgg gacgctggtg accgtacaat
     1921 tgcccgaggc tggcctgacg atgacggtcg gtcaacccgg cgagcattgg gtctcgaatg
     1981 cgctggcggt catcgctgcc gtggaagcgg cgggcggcga cctggcagtc gcggcgctgg
     2041 cgctgtccga gctgcaggcg atgccggggc gcggcgcacg catgcaggtg cccgtattgg
     2101 gcggcgaggc gctgctgatc gacgaaagct ataatgccaa cccggcctcc atgcgcgcga
     2161 cgctggcggt gctaggggag gagcctgcca cgcgccgcat cgccgtgctg ggggcgatgc
     2221 gcgagctcgg cgagcatggg ccgcagctcc acgccgacct ggccgagccg atggcccagg
     2281 cgaacgtcga ttttgcactg ctcgtcggtg aggagatggc gccgcttgcg aaagcgcttg
     2341 agggccgggt cgacttcgcg catgtggccg gcgccgcagc ggcgctcgat gccctcaagg
     2401 ggcggatcgg cgccggcgac gcggttctca tcaaggcgtc gaactccgtg gggctgggcc
     2461 ggttggtcga ccagctctcc gccggagcac tggcaggcgg ggattagacc aatgctttat
     2521 ctcatcgcag agcagctcgg cttctccggt atccttaacc tggtgcgcta tctgagcttc
     2581 cgcgccggcg cggccgtcgc gacggcgctg ctgctcggcc tgattatcgg tccgaagttc
     2641 atcggctggc tgcgcctgcg ccaagggaag gggcagccga tccgcaccga cgggccgcag
     2701 acgcacctcg ccaaacgcgg cacgccgacg atgggcgggc tgatgatcct caccgcgctc
     2761 actgcttcga tgctgctgtg gatggacccg cgcaatcctt atgtctggtc ctgcctcgcc
     2821 gtaaccctgg gcttcggcgc gatcggcttc ctcgacgatt gggacaaggt gcgcaaggcg
     2881 agccatgccg gcgtgcccgg ccgggtgcgg ctgttgctcg aattcctgat cgccggtgtc
     2941 gcggcctggt tgatcgtccg gcacaatggc gcgaacctct ggatcccatt cgtcgcgcag
     3001 ccgatcgccg atatcggctg gttctatatc gccttcgcgg ccttcacgat cgtggcgttc
     3061 ggcaatgccg tgaacctgac cgacggtctg gacggactcg cgaccatgcc ggtgatcatc
     3121 gcttcggtcg ccttcatggt catcacttat ctggtcggca acgcgaaatt cgcggcctat
     3181 ctcggcatcc cccacgtgcc aggcgcgggc gtcctcgc
//
LOCUS       DASQVK010000376         2508 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_119231,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000376 DASQVK010000000
VERSION     DASQVK010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2508
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119231"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..697
                     /locus_tag="VE567_08120"
     CDS             <1..697
                     /locus_tag="VE567_08120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010336247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase (Re/Si-specific)
                     subunit beta"
                     /protein_id="HYZ48845.1"
                     /translation="TLGNTAMIITGALVGSSGAILSYIMCRAMNRSFISVIAGGFGAV
                     ADTSGGAAAIDRPWKRGSAEDAAFLMEQAELVIIVPGYGMAVAQAQHALREMADQLKA
                     RGVTVKYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEDINSEFAQADVAFVIGANDV
                     TNPAAKTDKSSPIYGMPVLDVEKAKTVLFVKRSMGGVGYAGVDNDLFYRNNTMMLLAD
                     AKKMVEEINKAMS"
     gene            785..1009
                     /locus_tag="VE567_08125"
     CDS             785..1009
                     /locus_tag="VE567_08125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48846.1"
                     /translation="MLQPLPSIRLDRRADAAVRYLRTLLDEARTLTRNAEPGGPAALL
                     DHRIAHAQQEARRLAPDFSDNLLQNGEGEG"
     gene            1105..1968
                     /locus_tag="VE567_08130"
     CDS             1105..1968
                     /locus_tag="VE567_08130"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix DNA-binding protein"
                     /protein_id="HYZ48847.1"
                     /translation="MIFADREASRVAAIAAAESVGARVIGAEPLANALDRLSRQVAVD
                     SVLIELDESAGPAQERLLDWANHAAREGTARAVVALPGSQIDAVFARIDEPHVMLLCD
                     PTVEERAAALGLALAERKHKLHDQGMEADAERLRRLSEEVARIAGALAELSGSARSAL
                     HPTPRDLPAIDTHVGAQAVRALIRLRRLRDQFFPPNLFADPAWDMLLDLMAARLEGSR
                     VAVSSLCIAAAVPATTALRWIRTLTEHGLFVRSADPEDGRRIFIELSDPASETLTAYF
                     QTAFQMGLKLA"
     gene            complement(2072..>2508)
                     /locus_tag="VE567_08135"
     CDS             complement(2072..>2508)
                     /locus_tag="VE567_08135"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYZ48848.1"
                     /translation="DLLDGQRTDRQALAAMLEDPRQRVLVADQGGRLIGCVNVADQSD
                     RRAYLGMLSIEPARQAEGLGRLLIAAAEQHAASLFGATIIEMTVIRQREELIAYYERR
                     GYARTGEERPFPLDDPRFGIPKRHDLSFVVLAKELKPRTAFA"
BASE COUNT          423 a          815 c          861 g          409 t
ORIGIN      
        1 cacgctcggc aacacggcaa tgatcatcac tggcgcgctg gtcggcagct cgggcgcgat
       61 cttgtcctac atcatgtgcc gggcgatgaa ccgcagcttc atcagcgtga tcgccggcgg
      121 cttcggcgcg gtggccgata cgagcggcgg cgcggcggcg atcgaccggc cgtggaagcg
      181 cggctcggcc gaggacgcgg cgttcctgat ggagcaggcc gagctcgtca tcatcgtgcc
      241 gggctatggc atggcggtcg cgcaggcgca gcacgcgctc cgcgaaatgg cggaccagct
      301 caaggcccgg ggcgtgacgg tcaaatatgc gatccacccg gtcgcggggc gcatgccggg
      361 ccatatgaac gtgctgcttg ccgaagcgaa cgtgccgtat gacgaagtct tcgagctgga
      421 ggacatcaac tcggaattcg cgcaggcgga cgtggcgttc gtaatcgggg cgaacgacgt
      481 caccaacccc gccgccaaga ccgacaagag ttcgcccatt tacggcatgc ccgtgctcga
      541 tgtcgaaaaa gccaaaacgg tgttgttcgt gaaacgttcg atgggcggcg tcggctatgc
      601 cggcgtggat aacgatttgt tctatcgaaa taatacgatg atgctgctcg ccgacgccaa
      661 gaagatggtc gaagagatca acaaggcgat gagctgatcg aatccatttc ggatatgtct
      721 tcccgtctcg gccctccaac tcttcgcggc agtgcccatg tgcaccggcg aggagtccag
      781 gcccgtgctt cagccccttc cctcgatccg tctcgaccgc cgcgccgacg cggcggtgcg
      841 ctacctccgc accctgctgg acgaggcgcg aacgctgacc cgtaacgcgg agcctggggg
      901 acccgcggcg ctgctcgacc accgcattgc ccatgcccaa caagaggcgc ggcggcttgc
      961 gcccgatttc tccgacaatt tactccaaaa tggagagggg gagggctgac tctgcgccat
     1021 tttgacggca tggaggcgcg gctagatcat aaggtgaacg ggggcgcgta catgccaggg
     1081 ggatggggcg acgagccgtc catattgatc tttgccgatc gcgaggccag ccgcgtggcg
     1141 gcgatcgccg cggccgaaag cgtcggcgcg cgcgtgatcg gcgccgagcc gctcgcgaac
     1201 gcgctcgacc ggctcagccg ccaggtggcg gtggattccg tgctgatcga actcgacgag
     1261 tcggccgggc cggcacagga gcgcctgctc gactgggcca atcacgcggc ccgcgaaggc
     1321 acggcccgcg ccgtggtcgc gctgcccggg tcacagatcg acgcggtgtt cgcgcggatc
     1381 gacgagccgc atgtgatgct gctgtgcgat cccaccgtcg aggagcgcgc cgcggcgctc
     1441 ggcctcgcgc tcgccgagcg caagcacaaa ttgcacgacc agggcatgga agcggatgcc
     1501 gagcggctgc gccggttgag cgaggaagtg gcgcggattg ccggggccct ggccgagctg
     1561 tccggctcgg cgcgatcggc gctgcacccg accccgcgcg acctgccggc gatcgacacg
     1621 cacgtcggtg cgcaggcagt gcgcgcgctg atccggctgc ggcgcctgcg cgaccaattt
     1681 tttcccccca atctgttcgc cgaccccgcc tgggacatgc tgctcgacct gatggcagcg
     1741 cggctggagg gaagccgggt cgcggtttcc agcctctgca tcgccgcggc cgtgccggcg
     1801 acgacggcgc tacgctggat ccggacgctg accgaacatg gactgttcgt ccgcagcgcg
     1861 gatccggagg atgggcgccg gattttcatc gagttgtcgg atccggcgag cgaaacgctg
     1921 acggcctatt tccagaccgc tttccagatg gggctcaagc tggcttgagc gcgccctgct
     1981 ccgttcgctt cgagccgaat cgaggagcgg ccggctcccg tttcccgact tcgctcgaaa
     2041 cgaacggagc tgatttggga ggtgggtgcg attaggcgaa ggccgtcctg ggcttcagct
     2101 ccttcgccag cacgacgaag ctcaggtcat gacgtttagg aatgccgaag cggggatcgt
     2161 cgagagggaa ggggcgctcc tcgccggtgc gcgcatagcc gcgccgctcg taataggcga
     2221 tcagctcttc gcgctggcgg attacggtca tctctatgat cgtcgcccca aagaggctgg
     2281 cagcatgctg ctcggccgcc gcgatcagca ggcgccccag cccctcggcc tggcgcgcgg
     2341 gctcgatcga caacataccg agataggcgc ggcggtcgga ctgatcggcg acattgacgc
     2401 acccgatcag ccttcccccc tgatccgcaa ccagaacgcg ctggcggggg tcttcaagca
     2461 tcgccgcgag cgcctgccgg tcagtgcgct ggccgtcgag caagtccg
//
LOCUS       DASQVK010000377         7136 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_119232,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000377 DASQVK010000000
VERSION     DASQVK010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 7136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7136
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119232"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..222)
                     /locus_tag="VE567_08140"
     CDS             complement(<1..222)
                     /locus_tag="VE567_08140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008070642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HYZ48849.1"
                     /translation="MKAAVLFEPKTELRIEEVQVSKPGPREVLIRTAATGVCRSDLHF
                     VDGAYPHAMPCIPGHEAAGIVEQVGSEVTT"
     gene            complement(219..1517)
                     /locus_tag="VE567_08145"
     CDS             complement(219..1517)
                     /locus_tag="VE567_08145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYZ48850.1"
                     /translation="MDFDLAERQTYWRDRVRDFIETHVRPRDHEYRAQQKAGERWKVL
                     PVIEEEKARAKAAGIWNLFMPPGSGRPHVDDSFEFEGPGLTNLEYALCAEEMGRIGWA
                     SEVFNCSAPDTGNMEVFHRYGTREQKEQWLRPLMNGEIRSAFLMTEPAVASSDATNIE
                     TRIERDGDHYVLNGRKWWSSGAGDPRCKVAIVMGKTDFSAARHAQQSMILMELDAPGV
                     NILRHLPVFGYDDAPHGHMEIELKDVRVPAENMLLGEGRGFEIAQGRLGPGRIHHCMR
                     TIGAAEEALAKMCQRLLSRVAFGKVIAEHSVWEQRVAEARIDIEMTRLLCLKAADMMD
                     KAGNKAAQGEIAMIKVAAPRMALRIIDDAIQAFGGAGVSEDPGLAKIYAGIRTLRLAD
                     GPDEVHNRSIARLEFGKYGGKEAIAAAKQQFGSSDMGVAR"
     gene            complement(1585..3018)
                     /locus_tag="VE567_08150"
     CDS             complement(1585..3018)
                     /locus_tag="VE567_08150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019367689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYZ48851.1"
                     /translation="MSAERVPLSTKLAYGVGAVAYGIKDNGFSVFLLLFYNQVVGLPA
                     DQVGLAIMVALFVDALIDPAIGSLSDRTHTRIGRRHPWLYASTLPIAISWILLWNPPA
                     AGPGATLGYLVLVAILVRAAISTNEVPSAAMVPELTRDYHERTAVIRYRYMFGWASGL
                     AMLMAAYGYFLAPPHGSPTGPLARPGYHDFAIAGAAIMAISVLASAIGTHRRLAKPPK
                     HRIATLSPGQELRAILRTLANRPFLLLMAAGVFAYINQGITFAMANYLLGFVWLFRPA
                     QFLIYAVSLFAGVLLAFFIVTPVARAFGKRDGAAIMTLLSAAFNTMPYWLRLLRVFPE
                     PGDPMLLPLLLTLVSLATGFSVCVMMLIGSMVADVVEASEERSGRREEGLFFAGNLLM
                     QKCTSGLGIFASGMVLALAGFPAKAVPGRVPVDVLDRLTLYVAGLTVVIALAAAWLFT
                     RFPISKADHEARLAKLAVAASETHAKP"
     gene            complement(3015..3851)
                     /locus_tag="VE567_08155"
     CDS             complement(3015..3851)
                     /locus_tag="VE567_08155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003041335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYZ48852.1"
                     /translation="MRFSGKVAVVTGAASGIGRATALRFAEEGATVVIGDIDATAGQE
                     LADTSNGRVRFHRTDVTQEADIVALLDAAAKLGGPDILFNNAGAGGARAKIDEIDAEG
                     WDRTMDLLLRSVALGIRHAAPLMAAKGGGAIVNTASVAALAAGAAPTAYSVAKAGVLH
                     LTKLAAADLAKSKIRVNAVLPGFIMTNIFTSAIGLEGEAKAQANAMLSGMGSQTQPIQ
                     RPGRPEDIAAAVAFLASDDASFITGTHILVDGGLSVGPRHSWDPDTPGLFEALAALAP
                     AA"
     gene            3999..4787
                     /locus_tag="VE567_08160"
     CDS             3999..4787
                     /locus_tag="VE567_08160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYZ48853.1"
                     /translation="MDIASLFRLDGRIALVTGGSRNIGRWIAEGFIAQGAKVYISSRK
                     ADDCLETAGELGPNCVALPQDVSTVAGCRALAAQLAEHEQKLDILVNNAGTAWGEPFD
                     LFPENGWDKVMDLNLKSPFFLTQALHGMLKAGAASGQMAKVINITSIDGQRLNPWETY
                     SYHASKAGLIFLTKRMAARLIEDGIAVTSLAPGAFPSQMNRAARDHGDEVARAIPSKR
                     IGVPEDLAAAAVFLASRAGDYVVGDTITVDGGLVNAKLGASIDA"
     gene            complement(4818..5198)
                     /locus_tag="VE567_08165"
     CDS             complement(4818..5198)
                     /locus_tag="VE567_08165"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HYZ48854.1"
                     /translation="MKLPPYAELLGLTVAGEEEGAPLLLMPWGKGVMGRPGFLHGGAI
                     GGLLEMAAFMALYARFADNKRPRIKPITVTVDYMRGGREAETFALGKIARLGTRVANL
                     EALAWQEDRAKPIAVARMNVLLVR"
     gene            complement(5199..5630)
                     /locus_tag="VE567_08170"
     CDS             complement(5199..5630)
                     /locus_tag="VE567_08170"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010406832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HYZ48855.1"
                     /translation="MTVDAAFDPERFVATLAHRAHGGLIGLRYVGHGEDWAELAIDYS
                     DRLIMDEVTGVLASGPILALMDMATSMSIWCKQNRFRAQATLDLRVDYLRPATPGKAV
                     IGRGECYRITRSVAFIRGQAHDGDPADPVAHVAGTYMFTDI"
     gene            5716..>7136
                     /locus_tag="VE567_08175"
     CDS             5716..>7136
                     /locus_tag="VE567_08175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011540537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase"
                     /protein_id="HYZ48856.1"
                     /translation="MHPARHAQAMPDKPAIIVAETGEATGYAALNARSNQAARLFRAQ
                     GLQPGDRVAFFLENTPDYFALVWGAQRSGLLFVAISTKLTAPEVDYILADSGAKLLIA
                     DACLGPVAEALTTTIKRFSYGGAIAGFDPMETALDRQPPTPIPDESAGAAMLYSSGTT
                     GRPKGILRPPPLDPAIDAPTPLAAIASLFFGLGSDTVYLSTAPLYHAAPLAWTMTVHI
                     LGGTVVLMRHFEAEETLANIERYRCNAGQFVPTHFVRMLKLPEEVRSRYDTSSMKCAI
                     HAAAPCPVPVKRAMIDWWGPVIDEYYAATEGNGFTGIRAAEWLERPGSVGRVIGDSKL
                     HICDENGDELPPRREGLIYFETARHFEYHNDPAKTAESRNRHGWSTLGDVGWVDEDGY
                     LYLTDRKSFMIISGGVNIYPQEIENHLMTHPAVADVAVVGAPHDEMGEQVVAVVQPIA
                     GIEPGPALADELTAWCRHSLSGV"
BASE COUNT         1217 a         2428 c         2342 g         1149 t
ORIGIN      
        1 cgtcgtcact tcggaaccca cctgctcgac gatccccgcc gcctcatggc ccgggatgca
       61 gggcatggcg tgcggatagg cgccgtcgac aaagtggaga tcggagcggc acacgcccgt
      121 cgccgcggtg cggatcagca cttcgcgcgg gcccggcttg gagacctgga cctcctcgat
      181 gcggagttcc gtcttcggtt cgaaaaggac tgctgctttc accgggccac ccccatatcg
      241 ctagagccga actgctgctt cgccgcggca atcgcttcct tgccgccata tttgccgaac
      301 tcgagccggg cgatcgagcg attgtgcact tcgtccgggc cgtcggccag gcgaagcgtg
      361 cggatgccgg catagatttt ggcgaggccc ggatcttcgg acacgccggc gccaccaaac
      421 gcctggatcg cgtcgtcgat gatgcgcagc gccatgcgcg gggcggcgac cttgatcatg
      481 gcgatttcgc cctgcgcggc cttgtttccg gccttatcca tcatgtcggc ggccttgagg
      541 cagaggagcc gcgtcatctc gatgtcgatc cgcgcctcgg ccacgcgctg ctcccagacg
      601 ctgtgctctg cgatcacctt gccgaaggcg acgcgcgaga ggagccgctg gcacatcttg
      661 gcaagcgctt cctcggccgc accgatggtg cgcatgcagt gatggatgcg gccgggcccc
      721 aaccggccct gcgcgatctc gaagccgcgg ccttcgccga gcagcatgtt ttcggcgggg
      781 acgcgcacgt ccttcagctc gatctccata tggccgtgcg gggcgtcgtc atagccgaac
      841 accggcaggt ggcgcaggat gttcacgcca ggcgcgtcga gttccatcag gatcatcgat
      901 tgctgggcgt gacgcgccgc gctgaagtcc gtcttgccca tcacgatggc gaccttgcag
      961 cgcggatcgc cggcgcccga cgaccaccat ttgcggccgt tcagcacata atgatcgccg
     1021 tcgcgctcga tccgcgtctc gatgttcgtg gcgtccgagg aagcgaccgc gggttccgtc
     1081 atcagaaagg ccgagcggat ctcgccgttc atcagcgggc ggagccattg ctccttctgc
     1141 tcgcgggtcc cgtagcggtg gaagacttcc atgttgccgg tatcgggcgc cgaacaattg
     1201 aagacttcgg acgcccagcc gatccggccc atttcctccg cgcacagcgc atattcgagg
     1261 ttggtgagcc cgggcccttc gaactcgaaa ctgtcgtcga catgcggccg gccggacccg
     1321 ggcggcatga acaggttcca gatgcccgcc gccttggcgc gcgctttctc ttcctcgatg
     1381 acgggcagca ctttccagcg ctcgcctgct ttctgctggg cgcgatactc gtggtcgcgc
     1441 gggcggacat gggtttcgat gaagtcgcgg acgcggtccc gccaataggt ctggcgttcg
     1501 gccaaatcga aatccatggg cgctctccta agcgtgttgc ggccttctag gcagcgattt
     1561 gccgggcttt ccagccccaa aaaatcacgg ttttgcgtga gtctcggatg ccgctacggc
     1621 aagcttggca aggcgcgctt catggtcggc cttgctgatc ggaaaacgcg tgaagagcca
     1681 ggcggccgcc agcgcgatca ccaccgtcag gcccgcgaca tagagagtga gtcggtccag
     1741 cacgtccacc ggaacccggc ccggcacggc cttggccggg aagcccgcga gcgccagcac
     1801 catgccggaa gcgaaaatgc cgagacccga agtgcatttc tgcatcagca gattgcctgc
     1861 aaagaacagc ccttcctcgc gccgcccgct gcgctcctcc gacgcctcga ccacgtcggc
     1921 gaccatcgag ccgatcagca tcatcacgca cacgctgaag cccgtcgcca gcgagaccag
     1981 ggtgagcagc agcggcaaga gcatgggatc gccgggctcg ggaaagacgc gcagcaggcg
     2041 aagccaataa ggcatcgtgt tgaaggcggc cgacagcaag gtcatgatgg cggccccgtc
     2101 gcgcttgccg aacgcccgcg cgaccggcgt cacgatgaag aaagcgagca ggacgccggc
     2161 gaacaggctg accgcgtaga tcaggaactg ggccggccgg aacagccaga caaagcccag
     2221 cagataattg gccatcgcaa aggtgatgcc ctggttaata taggcgaaaa cgccggccgc
     2281 catcagcagc aggaaggggc ggttcgcgag cgtccgcagg atcgcccgca gctcctgtcc
     2341 gggcgagagt gtcgcgatcc gatgcttcgg cggtttcgcc aggcgcctat gggtgccgat
     2401 cgcggacgcg agtacgctga ttgccataat tgccgcgccg gcgatcgcga agtcatgata
     2461 gcccggccgg gccagcggac cggtcggcga gccgtgcggc ggcgccagga aatagccgta
     2521 agcggccatc agcatggcaa ggccgctcgc ccagccgaac atgtagcggt agcggatcac
     2581 cgccgtccgc tcgtgataat cgcgcgtcaa ctccggcacc atggccgccg acggcacttc
     2641 gttggtggaa atggcggcgc ggacgaggat cgcgaccaga accagatagc caagcgtcgc
     2701 gccgggtccc gccgccggcg ggttccagag caggatccag ctgatcgcga tcggcagagt
     2761 ggacgcatag agccaggggt gccgccggcc gatgcgggtg tgcgtgcggt cgctcaggga
     2821 gccgatcgcg ggatcgatca gcgcgtcgac gaacagcgcg accatgatcg ccagcccgac
     2881 ctggtccgcc ggcaatccga cgacctggtt gtagaagagc agcaggaaaa ccgagaagcc
     2941 gttgtccttg atgccatagg cgacggcgcc gacgccgtat gcgagcttgg tcgagagcgg
     3001 gacgcgctcc gcgctcatgc ggcgggcgcc agcgcggcga gcgcctcgaa caggccgggc
     3061 gtgtcaggat cccagctgtg ccggggcccg accgacaggc cgccatcgac gaggatatgc
     3121 gtgccggtga tgaagctcgc atcgtcgctg gcgaggaagg cgacggcggc cgcaatgtct
     3181 tcgggccggc cgggccgctg aatcggctgc gtttggctgc ccatgccgct gagcatcgcg
     3241 ttcgcctgcg ccttcgcttc gccttccagc ccgatcgcgg acgtgaagat gttggtcatg
     3301 atgaagcccg gcagcaccgc gttcacgcgg atcttgctct tggccagatc ggcggcggcg
     3361 agcttggtca ggtgcagcac cccggccttc gccaccgaat aggcggtggg tgccgcgcct
     3421 gcggccagcg cggcgaccga agcggtgttg acgatcgcgc cgccgccttt cgccgccatc
     3481 agcggcgccg cgtggcggat gccgagcgca accgagcgca gcagcaggtc catcgtccgg
     3541 tcccagccct cggcgtcgat ctcgtcgatt ttggcgcgcg cgccgcctgc gccggcattg
     3601 ttgaacagga tgtccgggcc gccgagtttc gccgccgcgt caagcagcgc gacgatgtcg
     3661 gcttcctgcg tcacgtcggt gcggtggaag cgcacccggc cgttcgaagt gtcggccagc
     3721 tcctgcccgg ccgtggcgtc gatatcgccg atgacgacgg tcgcgccctc ctccgcaaag
     3781 cgcagcgccg tggccctgcc gatgcccgac gccgcacccg tgactaccgc gaccttgccg
     3841 ctgaatcgca tcccgcctcc ctctgctttg gcctgggagc ataggctagg ccggttgtgc
     3901 gtcaacgacg ctacggcacc ggcgcggaat tccgagaggc ttgcgagcgg ccggcgaagc
     3961 gccgaaacga gcgtccaaat cgacacggga ggatggttat ggacattgcc tcattgttcc
     4021 ggctggatgg ccggatcgcg ctcgtcaccg gcgggtcgcg caacatcggc cgctggatcg
     4081 cggaaggctt catcgcgcag ggcgcgaagg tctacatttc ctcgcgcaag gccgatgatt
     4141 gccttgagac cgcgggcgag ctcggcccca attgcgtcgc gctgccacag gacgtgtcca
     4201 ccgtcgccgg ctgccgggcg ctggcggcgc agctcgccga gcacgagcag aagctcgaca
     4261 tcctcgtcaa caatgccggc accgcatggg gcgagccgtt cgacctgttt cccgaaaatg
     4321 gctgggacaa ggtgatggat ttgaacctca aatccccgtt cttcctcacc caagcgctgc
     4381 atggcatgct gaaggccggc gcggcttcgg gccagatggc gaaagtcatc aacatcacct
     4441 ccatcgacgg gcaacgcctg aatccgtggg agacgtacag ctatcacgcg tccaaggcgg
     4501 ggctcatctt cctcaccaag cggatggcgg cacggctgat cgaggacggc atcgccgtga
     4561 cctccctcgc gccgggcgct ttccccagcc agatgaatcg cgccgcgcgc gatcatggcg
     4621 acgaagtggc gcgggccatc ccgtcgaagc gcatcggcgt gccggaggat ctggctgcgg
     4681 cggcggtgtt tctcgcgtcc cgcgctggcg actatgtggt cggggacacg atcaccgtcg
     4741 acggcgggct ggtgaacgcc aagctgggcg cgagcatcga cgcttgagga tcccctcccg
     4801 cttgcgggag ggaaatccta gcgcacgagc agcacgttca tccgcgctac cgcgatcggc
     4861 ttcgcccgat cctcctgcca tgcgagcgcc tcgagattgg cgacgcgggt gcctagccgc
     4921 gcgattttcc ccaacgcgaa ggtctccgcc tcgcgcccgc cgcgcatata gtcgaccgtg
     4981 acggtgatcg gcttgatccg cggccgcttg ttatcggcga aacgcgcgta gagcgccatg
     5041 aacgccgcca tttcgagcaa gcccccgatc gcgccgccgt gcaggaagcc cgggcggccc
     5101 atcacgccct tgccccaggg catcagcagc agcggggcgc cttcctcctc ccccgcgacc
     5161 gtcaatccca gcagttcggc atagggcggc agcttcattc agatgtccgt gaacatatag
     5221 gtgcccgcca catgcgcgac cgggtcggct gggtcgccgt catgcgcctg gccgcggatg
     5281 aacgcgaccg agcgggtgat gcggtagcat tcgccgcgcc cgatcacggc cttgccgggc
     5341 gtcgccgggc gcagatagtc gacgcgcagg tcaagcgtcg cctgggcccg gaagcggttc
     5401 tgcttgcacc agatcgacat gctggtcgcc atgtccatca gcgcaaggat cggcccggag
     5461 gcgagcacgc cggtgacctc gtccatgatc agccggtccg aataatcgat cgccagctcg
     5521 gcccagtcct cgccatgccc gacatagcgc aggccgatca gcccgccatg cgcccggtgg
     5581 gccagcgtcg cgacgaagcg ctcgggatcg aaagcggcgt ccaccgtcat ggccgagggc
     5641 ttagagaccg gattcgcatt ccgcaacttg acctggccgc ccgcttcatc ttccctgagg
     5701 caaacggaga agaggatgca ccctgcccgc cacgcgcagg cgatgccgga caagcccgcg
     5761 atcatcgtcg cggaaacggg cgaggcgacc ggctatgcgg cgctgaacgc gcgctccaac
     5821 caggcggccc ggctcttccg cgcccaaggg ctgcaacccg gcgaccgcgt ggcgttcttt
     5881 ctcgagaaca cgcccgatta tttcgcgctc gtctggggcg cgcagcgaag cgggctattg
     5941 ttcgtggcga tctcgacgaa gctcaccgcg ccggaagtcg attatatcct cgccgacagc
     6001 ggagcgaagc tgctgatcgc tgacgcgtgc ctcggccccg tcgcggaagc gctgaccacg
     6061 accataaagc gctttagcta tggcggcgcg atcgccggct tcgaccctat ggaaacagcg
     6121 ctcgaccgcc agccgcccac cccgatcccg gacgagagcg ccggcgccgc aatgctctac
     6181 tcaagcggca cgaccggccg gcccaaaggc attctccgcc cgccgccgct cgacccggcg
     6241 atcgacgcgc cgacgccgct cgccgcgatc gccagcctgt tcttcggcct ggggtcggac
     6301 accgtctatc tctcgaccgc gcctctctac cacgccgccc cgctcgcctg gacgatgacc
     6361 gtccatatcc tgggcggcac ggtggtgctg atgcgccatt tcgaggctga ggaaacgctg
     6421 gcaaacatcg agcgctaccg ctgcaatgcc ggccagttcg tccccaccca tttcgtccgc
     6481 atgctgaaac tgcccgaaga ggtccgcagc cgctacgaca cttcctcgat gaagtgcgcg
     6541 atccacgccg ccgcgccctg cccggtgccg gtcaagcgcg cgatgatcga ctggtggggc
     6601 ccggtgatcg atgaatatta tgccgccact gaaggcaatg gctttaccgg catccgggcc
     6661 gcggagtggc tggaacggcc cggttcggtc ggccgcgtca tcggcgattc aaagctccac
     6721 atctgcgacg agaatggcga cgagctgccg ccccgccgcg agggcctgat ctatttcgaa
     6781 accgcccggc atttcgaata tcacaacgat ccggccaaga cggcggagag ccgcaaccgg
     6841 catggctggt ccacgctcgg cgatgtcggc tgggtggacg aggacggcta tctctacctc
     6901 accgaccgca agagcttcat gatcatctcg ggcggcgtga acatctatcc gcaggaaatc
     6961 gagaaccatc tcatgaccca cccggcagtg gcagacgtgg cggtggtcgg cgcgccgcac
     7021 gacgaaatgg gcgagcaggt ggtggccgtc gtgcagccga tcgccgggat cgagcccggg
     7081 cctgcgctcg ccgacgagct caccgcctgg tgccgccaca gcctttcggg cgtgaa
//
LOCUS       DASQVK010000378         4714 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_88576, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000378 DASQVK010000000
VERSION     DASQVK010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4714)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4714)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4714
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88576"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3645)
                     /locus_tag="VE567_08180"
     CDS             complement(<1..3645)
                     /locus_tag="VE567_08180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011543037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48857.1"
                     /translation="MRAVHALLGSLTLLIGALVGPQLIASSAEKPVARTYPVFAPAPR
                     DRTPEDMAAQNAGCIGCHTASDAPTMHATPAVALSCVDCHGGTPIKEAIDPNLAHDDP
                     RYVALRDKAHVLPRYPESWHYPSSANPQRGYTLLNKESPEFIRFVNPSDYRVAREACG
                     ACHMEIIEAGERSIMASGAMLFGGAAYNNGIIPFKNYVLGEAYTRTGEPAKIMSPGSP
                     PGTVSDAQKRRGALPVLYPLPTWTVIPPGDIFRVFERGGRNISSGFAEIGLPNSTGSI
                     QRLEEPGRPDLKQSNRGPGTGLRVAIPALNIHKTRLNDPFMWFMGTNDQPGDYRQSGC
                     AGCHVVYANDREPRHSLTYAKFGRDGQSATVDPTIAGKMDHGPIPSHGAVKPYGDASG
                     EAAKEKGHPIRHSFTRAIPTAQCMNCHMHQPNIFLNSYLGYTMWDYESDAPFMWPGPE
                     NKAPKPAGMSDADYQRVFKSQHHPDAATVRAINDRNPEAAAARGLWGDLEFLRNVYDL
                     NPLLKDTQFADYHGHGWNFRAILKRDREGNLLDANGAKVSPDDPEKWRKAGEGKFVEP
                     GTNPGKTVHMMDIHAEKGLQCADCHFGQDSHGNGLIYGEVANAIEIGCKDCHGTVDAY
                     PTLLTSGPAAPPSGNNLALLRNADGKRRFEWTTDEHGERVLIQRSVVDPKLEWRVSLV
                     RDSVDRSSTHFNAKAARAKLMSIRGADTGQFVFGSGVAKGDRAHGDDKMACFTCHLSW
                     TTSCGGCHLPIEANWKTSMHKYEGEETRNFATYNPQVARDDMFQLGKHQTTKGAIIAP
                     VRSTSALVLSSTNLNRERIYIQQPPISAAGFSSQAFAPHFPHTVRKTETKTCSDCHLS
                     ANDDNNAIMSQLMLLGTNFVNFVGMNAWTGLEGGFEAVRVTEWDEPQAVIGSYLHRYA
                     YPDFYKAHVEQNGRELKDWVRGERFDGHLSGETGATELFRNVVKSTVGRVGCLQLRGE
                     YMYVAEGKGGFRVYDAASIGNKGFSEPIVNAPFSGLGHDTHVDTRNATCMALPTDQPI
                     NPLRNTKEMRELNQEQAFHPIYSYAVVTDAEEGLVLVNVETMADGNFRNNFLKRAVTW
                     NPNGALAGARHVTLAGHIAYVTTARGLAVVDLDDPLHPRLAAEVPLQDARASAIQFRY
                     LWVSDRDGVKLFDVTNMLAPTPVPSGTIRLADARKMYIARTYLYIAGKSEGLVIANVT
                     RPAAPVIYRKE"
     gene            complement(3645..>4714)
                     /locus_tag="VE567_08185"
     CDS             complement(3645..>4714)
                     /locus_tag="VE567_08185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013849591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48858.1"
                     /translation="QPFQFDFRGFLFQDQQLGIRLFGNRDNNRFQFNVAALWRLEKDT
                     NSGLNSVVQTPRQDFVFVANAYLQDLPVPGFTSQGTVVYNMNREQDRIEVDDNGFPVR
                     PALLGDLRGREYDVVYVGYNGDGHFGRVNLTVSAYGAFGQDRNSFFTSKPADIRAFFV
                     AAEPSVDFDWVRVRLSVLYASGDRNPRNNVEGGFDAIFENPAFAGADTSYWIRQTIPF
                     AGGGRAVAINGRNGILNSLRSSKEQGQSNFNNPGTILVGAGADFDVTPTTRLTLNANH
                     LWFANTAVLQALRVEGSIPKEIGFDLSAAATWRPKANQNLVFRLSGALLEPGDGFKDL
                     FASQPRDHRFYSVLLNAILTY"
BASE COUNT          768 a         1427 c         1634 g          885 t
ORIGIN      
        1 ctctttccgg tagatgactg gtgctgcggg cctggtcacg ttcgcgatca ccagcccttc
       61 gctcttgcca gcaatgtaga gataggtgcg cgcgatatac atcttgcggg catcggcgag
      121 ccggatggtg cccgagggga ccggcgtcgg cgcgagcatg ttggtcacgt cgaacaattt
      181 cacgccgtcg cggtcgctga cccagagata gcggaactgg attgcggagg cgcgcgcatc
      241 ctggagcggc acttcggcgg cgaggcgcgg gtgaagcgga tcgtcgagat cgaccaccgc
      301 tagcccgcgc gcggtcgtca cataggcgat gtgcccggcg agcgtgacgt gtcgcgcgcc
      361 ggcgagcgcg ccgttcgggt tccaggtgac cgcccgcttc aggaaattgt tgcggaaatt
      421 gccgtccgcc atcgtctcga cattgacgag gaccagccct tcttcggcat ccgtcaccac
      481 cgcatagctg tagatcgggt ggaacgcctg ctcctggttc agctcgcgca tttcctttgt
      541 gttgcgcagc ggattgatcg gctggtcggt cggcagcgcc atgcaggtgg cgttgcgggt
      601 atcgacatgc gtgtcgtgcc caaggcccga aaagggtgcg ttcacgatcg gctcggagaa
      661 gcccttgttg ccgatcgagg cggcgtcata gacgcggaag ccgcctttgc cttcggcgac
      721 atacatatat tcgccgcgca gctgcaggca gccgacgcgc ccgaccgtcg atttgacgac
      781 gttgcggaac agctcggtgg cgccggtctc gccggacaga tggccgtcga agcgttcgcc
      841 gcgcacccag tccttcagct cgcggccatt ctgctcgaca tgcgccttgt agaagtcagg
      901 ataggcatag cggtggagat aggagccgat caccgcctgc ggctcgtccc attcggtcac
      961 gcgtaccgcc tcgaagccgc cctcgaggcc ggtccaggcg ttcatcccca cgaagttcac
     1021 gaaattggtg ccgagcagca tcagctgcga cataatcgca ttattgtcgt cattggccga
     1081 gaggtggcag tccgagcagg tcttggtctc ggtcttgcgc accgtatgcg ggaagtgcgg
     1141 cgcgaaggcc tgggaggaga agccggccgc cgagatcggc ggctgctgga tatagatgcg
     1201 ctcgcggttg aggttggtcg aactgagcac cagcgccgag gttgagcgca ccggcgcgat
     1261 gatcgcgccc ttggtggtct ggtgtttgcc cagctggaac atgtcgtcac gcgcgacctg
     1321 aggattgtag gtcgcgaaat tgcgtgtctc ctcgccttca tatttgtgca tcgaggtctt
     1381 ccagttcgcc tcgatcggca aatggcagcc gccgcacgat gtggtccagg acaagtggca
     1441 ggtgaagcag gccatcttgt cgtcgccgtg cgcgcggtcg cccttggcga cgcccgagcc
     1501 gaagacgaac tggccagtgt cggcgccgcg aatcgacatc agcttggcgc gcgccgcctt
     1561 ggcgttgaaa tgggtcgagg agcggtcgac ggaatccctg accagactca cgcgccattc
     1621 gagcttcgga tccacgaccg agcgctggat cagcacccgc tcgccatgct cgtcggtggt
     1681 ccattcgaag cggcgcttgc cgtcggcgtt gcggagcagg gcgagattgt tgccgctggg
     1741 cggcgcggcc ggcccggagg tcagcagcgt cggataggcg tcgaccgtgc cgtgacagtc
     1801 cttgcagccg atttcgatcg cattggcgac ttcgccatag atgagtccat tgccgtggct
     1861 gtcctgcccg aaatggcagt cggcgcattg caggcccttt tcggcatgga tgtccatcat
     1921 atggaccgtc ttgccgggat tggtgccggg ttcgacgaat ttgccttcgc cggccttgcg
     1981 ccatttctcc ggatcgtcgg gcgagacctt ggcgccgttc gcgtcgagca gattgccttc
     2041 gcggtcgcgc ttcaggatcg cgcggaagtt ccagccatga ccgtgataat cggcgaactg
     2101 cgtgtccttg agcagcggat tgaggtcata gacgttgcgc aggaattcga ggtcgcccca
     2161 caatccgcgc gccgccgccg cttcggggtt gcggtcgttg atcgcgcgga cggtcgcggc
     2221 gtccggatga tgctggctct tgaagacccg ctgataatcg gcgtccgaca tgcccgcggg
     2281 cttcggcgcc ttgttctcgg gtccgggcca catgaacggc gcgtcggact catagtccca
     2341 catcgtgtag ccgagatacg agttcaggaa gatgttcggc tggtgcatgt ggcagttcat
     2401 gcactgggcg gtcgggatcg cacgcgtgaa gctgtgccgg atcgggtggc ccttctcctt
     2461 cgccgcttcg cctgacgcat cgccataggg cttgaccgcg ccgtggctgg ggatggggcc
     2521 atggtccatt ttgcctgcga tcgtcggatc gacggtggcg ctctgtccgt cacggccgaa
     2581 tttcgcatag gtcaggctgt gccgcggctc gcggtcgttc gcatagacca catggcaacc
     2641 agcgcagccc gattggcgat agtcgcccgg ctggtcgttg gtgcccatga accacatgaa
     2701 cggatcgttg aggcgggtct tgtggatatt gagcgcgggg atcgcgacgc gcaggcccgt
     2761 gccggggccg cggttcgatt gcttgaggtc cggccggccc ggctcttcga gccgctggat
     2821 cgacccggtg gagttgggca ggccgatctc ggcaaagccc gacgagatgt tgcggccgcc
     2881 gcgctcgaac acgcggaaaa tgtcgcccgg cggaatgacc gtccatgtcg gcagcggata
     2941 gaggacgggg agggcgccgc gccgcttctg cgcgtcggag acggtgccgg gcgggctgcc
     3001 gggcgacatg atcttcgccg gctcgccggt gcgggtataa gcctcgccca gcacgtaatt
     3061 cttgaacgga atgatgccgt tattgtaggc cgcgccgccg aacagcatcg cacccgaggc
     3121 catgatcgag cgctcgccgg cctcgatgat ttccatgtgg caggcgccgc acgcctcacg
     3181 cgcgacgcga tagtcggacg ggttcacgaa gcggatgaac tcggggcttt ccttgttcag
     3241 cagcgtgtag ccgcgctggg gattggccga agacgggtaa tgccagcttt ccggatagcg
     3301 cggcaggacg tgcgccttgt cgcggagcgc gacatagcgc ggatcgtcat gcgccagatt
     3361 ggggtcgatc gcttccttga tcggcgtgcc cccatggcag tcgacgcagc tcagcgcgac
     3421 cgcgggcgtg gcgtgcatcg tcggcgcgtc ggatgcggtg tggcagccga tgcagcccgc
     3481 attctgcgcc gccatgtcct cgggggtccg gtcgcggggc gcgggcgcga agaccgggta
     3541 ggtgcgcgcc accggctttt cggcggacga ggcgatgagt tgtggcccga ccaacgctcc
     3601 gatcaggagc gtcagggacc cgagcaaggc gtgaacggcg cgcatcagta ggtcaggatc
     3661 gcattcagga ggacggaata gaagcggtgg tcgcgcggct ggctggcgaa caggtccttg
     3721 aagccgtcgc ccggctccag cagtgcgccc gagaggcgga agacaaggtt ctggttggcc
     3781 ttggggcgcc aggtcgccgc cgccgacagg tcgaagccga tctccttcgg gatcgatcct
     3841 tcgaccctga gcgcctgcag taccgccgtg ttcgcgaacc acaggtgatt ggcgttgagc
     3901 gtcagccgcg tggtcggcgt cacgtcgaaa tcggcgcccg cgccgaccag gatcgtgccc
     3961 ggattgttga agtttgactg gccctgttcc ttcgaggagc gcagcgagtt caggatgccg
     4021 ttgcggccgt tgatggcgac cgcgcggccg ccgcccgcga acgggatcgt ctggcgaatc
     4081 cagtagctgg tgtcagcacc cgcgaaggcc gggttttcga agatcgcgtc gaagccgcct
     4141 tcgacattgt tgcgtgggtt ccggtcgccg ctcgcataaa ggacggagag gcgcacgcgg
     4201 acccagtcga aatccacgct cggctcggcc gcgacgaaga aagcgcgaat gtccgccggc
     4261 ttggacgtga agaagctgtt ccggtcctgc ccgaacgctc cataggcgga gacggtgagg
     4321 ttgacccggc cgaaatggcc gtcgccatta tagccgacat agacgacgtc atattcgcgc
     4381 ccgcgcaggt cgccgagcaa ggcagggcgg acggggaagc cgttatcgtc cacctcgatc
     4441 cggtcctgct cgcggttcat attgtacacg accgtgccct ggctcgtgaa accgggcacg
     4501 ggcaggtcct gcagataggc gttcgcgacg aagacgaagt cctgtcgcgg cgtctgcacc
     4561 accgagttca ggccggaatt ggtgtccttc tccagccgcc acagcgccgc cacgttgaac
     4621 tggaagcggt tgttgtcgcg gttgccgaac aggcggatgc cgagctgctg atcctggaac
     4681 aggaagccgc ggaaatcgaa ctggaagggc tgaa
//
LOCUS       DASQVK010000379         2406 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_214546,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000379 DASQVK010000000
VERSION     DASQVK010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2406)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2406)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2406
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214546"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            169..750
                     /locus_tag="VE567_08190"
     CDS             169..750
                     /locus_tag="VE567_08190"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0016018 - cyclosporin A binding [Evidence
                     IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HYZ48859.1"
                     /translation="MRRWRAFIIAMAALAAAPALAAAPRVAIQTSLGTIVVELADKQA
                     PITAKNFLRYVEAGKFNGTSFYRAGRSPSAPQFGLVQGGIDHDMRRAFFSIDHEPTSK
                     TGLKHLDGTISMARNAPGTAMGDFFICVGAQPSLDAKGAYPGYAAFGHVVSGMGVVKK
                     ILASPTWVGRGSGALKGQIMIKRIPIVSAKRIN"
     gene            762..1595
                     /locus_tag="VE567_08195"
     CDS             762..1595
                     /locus_tag="VE567_08195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009822576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00266 family protein"
                     /protein_id="HYZ48860.1"
                     /translation="MPQSPWEHHRQSGVADDIDFEIKGQELQFLEIELDPGESAVAEA
                     GALVWKDASIEMTTVFGDGSGGSDGGFMGKLLGAGKRLVTGESLFTTVFTHRGSGKAR
                     VAFASPTPGAILPLKLSELGGELICQKDSFLAAAKGVSIGVHFQRRIMTGLFGGEGFI
                     MQRLQGDGWVFVQMGGTVVERTLGPGQQLHVDTGCLAAYTPGVDFDLVAAGGVKSMIF
                     GGEGAFFARLTGPGRVWIQSLPFSRLAGRMLAAAGSHGGQNRGEGSVLGAFGDFIEGN
                     R"
     gene            complement(1576..2022)
                     /locus_tag="VE567_08200"
     CDS             complement(1576..2022)
                     /locus_tag="VE567_08200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011950982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 domain-containing protein"
                     /protein_id="HYZ48861.1"
                     /translation="MRLFTIGYEGVTVDEVLTALKGAGVEQVADIRAIAASRRPGFAK
                     SSLAANLASVGIGYRHFRALGTPKPGRDAAKKGDRATLERVYAGQLALPEAQAEAAAL
                     KALIAERPTALLCFERDPEMCHRSLLIAAELPDAEVEHLFASDCPR"
     gene            2131..>2406
                     /locus_tag="VE567_08205"
     CDS             2131..>2406
                     /locus_tag="VE567_08205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48862.1"
                     /translation="MGKLSSSKPGSGAHAGRVDFGAFEGPSAFQRELQRARQHLAKLE
                     AEERLRTHQPLIANDHSSFDESPAFARVCNTLIWIIVAAPFVIALLAL"
BASE COUNT          403 a          784 c          808 g          411 t
ORIGIN      
        1 cacgcagggc gtgcgcctgt tccatgtcgc cgacgacgag catgtcgtcg ccgcggccaa
       61 gatcgatgag agcgaggacg aggtggacgt cgagggaact cccgaaatcg cccccgaacc
      121 cggcgcgacg gtgggcgaag acctggcctc gggcgaggag taacgcgcgt gcgtcggtgg
      181 cgtgccttca tcattgccat ggccgcgctg gcggccgccc cggcactggc cgcagcaccc
      241 cgcgtggcga tccagacgtc gctcggcacg atcgtggtcg agctcgccga caagcaggcg
      301 ccgatcacgg cgaagaattt cctgcgctat gtcgaggcgg gcaagttcaa cggcaccagc
      361 ttctaccgcg ccggccgctc cccgtccgca ccgcaattcg ggctggtgca gggcggcatc
      421 gaccatgaca tgcgccgggc tttcttctcg atcgaccatg aaccgaccag caagacgggg
      481 ctgaagcacc tcgacggcac gatctcgatg gcccgcaacg cgccgggcac cgcgatgggt
      541 gatttcttca tctgcgtggg cgcccagccc tcgctcgacg cgaagggcgc ctatccgggc
      601 tacgcggcct ttgggcatgt ggtaagcgga atgggcgtgg tgaagaagat cctcgcctcg
      661 cccacctggg tcggccgcgg ctcgggcgcg ctcaagggcc agatcatgat caagcgcatc
      721 ccgatcgtct cggccaagcg catcaactga ggagccctcg aatgccgcaa agcccctggg
      781 agcaccaccg ccagtccggc gtcgccgacg atatcgactt cgagatcaag ggccaggagc
      841 tgcagttcct cgagatcgag ctcgatccgg gcgaaagcgc tgttgccgag gccggcgcgc
      901 tggtgtggaa ggacgccagc atcgagatga cgacggtgtt cggcgacggc agcggcggca
      961 gcgacggtgg cttcatgggc aagctgctgg gcgccggcaa aaggctggtg accggcgaga
     1021 gcctgttcac caccgtcttc acgcaccgcg gctcaggcaa ggcgcgcgtc gccttcgcct
     1081 cgccgacccc cggtgcgatc ctgccgctga agctcagcga gctgggcggc gaactcatct
     1141 gccagaagga cagtttcctc gccgctgcca agggcgtgtc gatcggcgta catttccagc
     1201 ggcgcatcat gaccggcctg ttcggcggcg aaggcttcat catgcagcgc ctacagggtg
     1261 atggctgggt attcgtgcag atgggcggca ccgtggtcga gcggacgctg gggccggggc
     1321 agcagctcca tgtcgatacc ggctgccttg cagcctatac gccgggcgtc gacttcgacc
     1381 tggtcgcagc cggcggcgtc aagagcatga tcttcggtgg cgagggcgcc ttcttcgccc
     1441 ggctgaccgg gccgggccgg gtatggatcc agtcgcttcc cttctcccgc ctcgccggcc
     1501 ggatgctggc cgctgccggg tcccatggcg ggcagaaccg cggcgaaggc tcggtgctcg
     1561 gcgcgtttgg cgatttcatc gagggcaatc gctagcaaac aagtgctcga cctcagcgtc
     1621 gggcagttcg gccgcgatca gcagcgagcg gtggcacatt tcgggatcgc gctcgaagca
     1681 gagcaaggcg gtcggccgct ccgcgatcag cgccttcagc gcggcggctt ccgcctgggc
     1741 ttcgggcaaa gcgagctgcc ccgcatagac gcgttcgagc gtcgcgcgat cgcctttctt
     1801 cgcggcgtcg cgccctggct tgggcgtgcc gagcgcgcgg aaatggcgat agccgatgcc
     1861 gacactcgcc agattggccg cgagcgagga cttggcgaag ccgggcctgc gcgatgcggc
     1921 gatggcgcgg atgtcggcga cctgctcgac gcctgcgccc ttcagcgccg tcagcacttc
     1981 atcgaccgtg acgccttcat agccaatcgt gaacagacgc atgttttcct ctcgtttcat
     2041 aacggggcta cctaacgcca tttaccccct tgctaaggaa atttcctgtg ccacactcgc
     2101 tcataaaaca gggggagcag ggaggattgc atggggaaac tttcttcctc caagccaggg
     2161 tccggggcgc acgccggtcg cgttgacttc ggtgcctttg aaggcccatc ggcatttcag
     2221 cgcgagttgc aacgcgctcg gcaacatctc gcgaagcttg aggcagaaga acggttgcgg
     2281 acgcatcagc cattgattgc caacgaccat agcagcttcg acgagtcacc cgcttttgcc
     2341 cgggtctgca atacgctgat ctggattatc gtggcggcgc cgttcgtcat cgcactgctg
     2401 gcgctg
//
LOCUS       DASQVK010000380         4263 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_309394,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000380 DASQVK010000000
VERSION     DASQVK010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4263
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309394"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(261..524)
                     /locus_tag="VE567_08210"
     CDS             complement(261..524)
                     /locus_tag="VE567_08210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48863.1"
                     /translation="MEGYGGPAQPSLTIGQCPNGGQGGKTRESLTLDAIRRPREASLW
                     KLEASLKCRSCRKGRHVPPVRMIKLTETREITPYKWVHPEQER"
     gene            complement(1541..1696)
                     /locus_tag="VE567_08215"
     CDS             complement(1541..1696)
                     /locus_tag="VE567_08215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48864.1"
                     /translation="MGLRLGQPLLKEKPYAKLETSSDGVSGAWNDGDSDDEFRGSAAL
                     PARWHVQ"
     gene            complement(2030..2299)
                     /locus_tag="VE567_08220"
     CDS             complement(2030..2299)
                     /locus_tag="VE567_08220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48865.1"
                     /translation="MTPAAGELAATLDMTGKTMSSMSRPVHPSAVTAASGEHGRRERD
                     QKRCAEDGQRGVSHVFENSGLPLEPLRVWQTPRETYLVIETRPNV"
     gene            complement(2411..2584)
                     /locus_tag="VE567_08225"
     CDS             complement(2411..2584)
                     /locus_tag="VE567_08225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48866.1"
                     /translation="MTTVAKLLSQKQQLLERLQQDPGPNERTEIERLLKQVNAALNLL
                     EEAGPGASIDGES"
     gene            2844..3101
                     /locus_tag="VE567_08230"
     CDS             2844..3101
                     /locus_tag="VE567_08230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48867.1"
                     /translation="MSKKGITGHDEWVLTEALATALVALEQLPSKHQPRPHMEDIRKL
                     LTAGCAPGTVTLHLAQAKCRLFPDTDPLVIYEEYGLKDGQG"
     gene            complement(3113..>4263)
                     /locus_tag="VE567_08235"
     CDS             complement(3113..>4263)
                     /locus_tag="VE567_08235"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sorbosone dehydrogenase family protein"
                     /protein_id="HYZ48868.1"
                     /translation="ASASRVVQRPASAVPQVPPGFKVELFADGLNGPRIIRTAPNGDI
                     FVAETRAGRIRVLRAAVGKSRPDIDEIYSSGLDRPFGVAFFPSGDNPQWLYVANTGSV
                     VRFAYRNGDLKASGNPETVVANLPRGYGHSTRDIAFTPDNSKMLVSVGSAGNDGERMG
                     APPGGIEAWSREHALGAAWGAETDRGAVLVFDPDGKSRKIFATGIRNCVGLAIQPQSG
                     VPWCSTNERDGLGDNLVPDYVTRMRENAFYGWPWFYIGSNEDPHHVGRRPDLKDKVTV
                     PDVLLQAHSASLGLTFYDGQNFPAEYRGDAFAAQHGSWNRSKRTGYKVIRIRLKDGVP
                     TGEYEDFVTGFVVNDSEVWGRPVGVTVARDGALLVSEDGNGTIWRISR"
BASE COUNT          815 a         1328 c         1308 g          812 t
ORIGIN      
        1 cagcgtcgcc agccgttggg gcactccgat tgcttgcgcg aggacatgat tggtccgctc
       61 attgatgtca acgctttccc ctacaagcag gcgttgtcct tggctggcca agtgttccgc
      121 tagcgcttct cgagaaatac cgaatgcctc cgacagcggt cggttggcga ctgaggcgca
      181 gaagcgtttc gcggccggac tcgcgttcaa aataatgcct tcgctattca cgagaaggca
      241 cggcagcggg ctcgccccgc ctaccgctcc tgctccggat gcacccactt gtaaggcgtg
      301 atctcgcgcg tctcggtcag cttgatcatt cgaaccggcg gcacgtggcg gcctttccgg
      361 caggaccggc atttgaggga cgcttccagt ttccacagcg acgcctcacg cggccggcgg
      421 atggcgtcca gcgttaggct ctcccgtgtc ttgccgcctt ggccgccatt ggggcattgg
      481 ccgatcgtca gcgacggctg ggcagggccg ccgtagccct ccatgcggat tgaccaggct
      541 ccgcctcgcg cggtcggcgt gccgggcggc cttctaaggc agcctacccg gcgccctgcg
      601 ctcgtctttc cgcggcacgg tgcgaccgca ccggatgact tgccgactct ttcgcctcat
      661 cgacagcgat tacagggacc tttgcacgca cctgcaatct gctaggcata gccgcagctg
      721 cggcctccaa ccaaagattg gcccctgact cgaggcgaaa ctcgcaatga aacaggcgct
      781 gacggtgtaa gaggttctgg aacggatcgc atctgccgta gccggaaccg tagataacga
      841 tcagcgcaac agaaaaagtc ctgcaacgtc aaaaaggttg acaggacacc ccttccgcca
      901 tctgcattga ttttatttaa cagctttaaa cttttgccct gtgttcacta gtgaacagac
      961 accagctact aacggacgta accatttgaa cgtcaccgtc cggcccgcgg catttatcgg
     1021 tgatgagaac gcaccggttg cgctcccgct ttcctctaac ggaatggagc agcggccatg
     1081 gagcgacgcc gtttcaaaca aaccgtccca ctagaccaac gcttgatggc agaggcggaa
     1141 cgccttcgaa aagaagcgcg aggcacgcca ccgggcatcg aacgcgagcg gctcatccgg
     1201 cgagccaggc aagctgaaac cgcggctcac atgcaggaat ggctctcttc gcccgggctt
     1261 cgggcaccca ggtaggaagc agacttaatt cgcaagcgcc tccgcgagcg gggccgcggc
     1321 tgcggcacgt cgcccttgcg gctctctccg atgctctgcg ggctgttcag gtcagtagcg
     1381 aactgaaatt acgctcacgg tctcaatcga tggcatacac gtcaaaatcg ggccgtatcg
     1441 gtagaggcga tgccgaaaga acggctccca atctgcagca ggatagatga attgagcagt
     1501 cggtagcagt atgccgcagc tggggttact caccgcgtaa tcattgtaca tgccagcgcg
     1561 ccggtaatgc cgcgcttccg cggaattcat cgtcgctatc gccgtcgttc caagcaccac
     1621 tgacgccatc agaactagtt tcaagtttcg cataaggttt ttccttcaat aacggctggc
     1681 cgaggcgcag gcccatctaa ttgggtcaag ccggcaaacc ggttcaggca cttccacagt
     1741 cggcaggcgt cgagtccgag ttttccgttg gagcctaaac ctcctttcgt cggaagaaaa
     1801 ccttctcgca aggttggcgg ccctacctgc cggaggagga ggcagcgttt gcccgaatgg
     1861 caagccgcga ttccttgttc gcggccgggc ctccgatcgg ggcatgcaac agaaccaact
     1921 ttgcgaactt cgtgccagtt cgtcgcggtt cgggattgga attctccctc accgtaatcc
     1981 tacggaccac gtcatttggc tgagaacgcc gatcagagag tcgtgaacat caaacatttg
     2041 gcctggtttc aatgaccaga tatgtctctc tcggcgtttg ccagacgcgg agcggttcca
     2101 gcggcaagcc ggagttttca aacacatgcg acacccctct ttggccgtcc tcggcgcagc
     2161 gcttctgatc gcgctccctt cgtccgtgct cgcccgaggc ggcggtcacg gcgctggggt
     2221 gcacgggtct ggacatggag gacatggttt tgccggtcat atcgagggta gcggccagtt
     2281 cgccggcggc cggcgtcatg ccaacgacgc ctatagcaag gccgcgtcgg atgaactcga
     2341 caagctgctc gatcagaaaa tgaagagcat ctgtcgcggc tgctgaggga tcgccaatag
     2401 cgccggagag tcagctttct ccgtcaatgg aggcgcctgg gccggcctcc tccagcaggt
     2461 tcagcgcagc gtttacctgc ttcagcaggc gctcgatttc cgtgcgctcg ttcgggccgg
     2521 gatcttgttg cagccgttcc aggagctgct gcttctggga gagcagtttt gcgacggttg
     2581 tcatcacaag accaagatgc tggccgcgga aatgttccga tgctctcgat cacgagttcg
     2641 cggcgatagc gccgaaatca agcccccaga gagtggattt gcggaaggtg tctgccagcg
     2701 agcggagaga tcacgcggta cagtcccggc ctttcggccg acaaaaaaag ccagtagttg
     2761 cccgtaatga cgatctcgcg atagcggcag ccccccggct tgggctagaa tgcagtctgc
     2821 tccgacctgc gcgaggtgtg gtgatgtcca aaaagggaat cacgggccac gacgaatggg
     2881 tgctcaccga ggcgcttgcg acggcgctcg tcgcgctgga gcagctgccg tcaaaacatc
     2941 agccgcggcc gcatatggag gatatccgca agcttttgac cgcgggctgc gcaccgggca
     3001 ctgtcacgct gcatctggcg caggcgaagt gccggctgtt tcccgacacc gatccgcttg
     3061 tcatctacga ggaatacggc ctgaaggacg gacagggctg aagacaggtc cgtcaacggc
     3121 tgatccgcca gatcgtgccg ttgccgtcct cggagaccag gagcgccccg tcgcgcgcca
     3181 cggtgacgcc caccggacgg ccccacacct cggaatcgtt gacgacaaag ccggtgacaa
     3241 aatcctcgta ttcgccggtc ggcacgccat ccttcaggcg gatgcggatg accttgtatc
     3301 cggtccgctt cgatctgttc caggagccgt gctgggcggc gaaggcgtcg ccgcggtatt
     3361 cggcgggaaa attctgtccg tcgtagaagg tcaggccaag cgaagcggaa tgcgcctgca
     3421 gcagcacgtc ggggaccgtg accttgtcct tcaggtcggg acgcctgccg acatggtgcg
     3481 ggtcttcatt gctgccgatg tagaaccacg gccagccata aaacgcgttc tcgcgcatgc
     3541 gcgtgacata gtccgggacg aggttgtcgc cgagcccgtc ccgctcattg gtggagcacc
     3601 atggcacgcc gctctgcggc tggatcgcaa ggccaacgca gttgcggatt ccggtggcga
     3661 agattttccg gctcttgccg tcggggtcga agaccagcac cgcccctcga tcggtctcgg
     3721 cgccccaggc ggcgccgagg gcgtgctcgc ggctccacgc ctcgatgcca cccggtggag
     3781 cccccatccg ctcgccgtca ttgccggcgg agccgaccga gaccagcatt ttggaattgt
     3841 ccggggtgaa ggcgatgtcg cgcgtcgaat ggccgtagcc gcgcggcaga ttggcaacga
     3901 ccgtctcggg attgccagac gccttgagat ccccattgcg gtaggcaaag cgaacgacgc
     3961 tgccggtgtt ggcgacatag agccattgcg ggttgtcgcc gctcggaaag aacgcgacgc
     4021 cgaatggacg atcgaggccg ctggaataga tctcgtcgat atcgggcctg ctcttgccca
     4081 ccgcggcgcg caacaccctg atcctgccgg cgcgcgtttc cgcgacaaag atatcgccat
     4141 tcggcgcggt acggataatc ctcgggccat tgagaccatc ggcgaacagc tcgaccttga
     4201 agcccggcgg cacttgcggg acggcggatg cgggcctctg caccacccgc gaggcgctag
     4261 cgg
//
LOCUS       DASQVK010000381         3385 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_373262,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000381 DASQVK010000000
VERSION     DASQVK010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3385
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373262"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1595)
                     /gene="lptD"
                     /locus_tag="VE567_08240"
     CDS             complement(<1..1595)
                     /gene="lptD"
                     /locus_tag="VE567_08240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018250748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0010033 - response to organic substance
                     [Evidence IEA];
                     GO_process: GO:0061024 - membrane organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HYZ48869.1"
                     /translation="MNAKRWIWLAGVAGFGAATAAGAQNLQDRSVAPPPPEASSALPP
                     AGQQVVDFSADNLEYSNDTDTVVAAGDVRMFREGNRLRADKVTWNRKTGDVRAEGNVA
                     VTNPQGDVAYGDSVQLTDTLRDGVVENLLVVLESGGRLAASRGSRQGDVYTLDNAAYT
                     ACSVEDANGCPKEPTWKITAVRVIYNTARQRVYYKGARLHLFGLPLIPLPLLSNPTGG
                     QGGSGVLVPDIKFSRVNGLELTLPYYLQLAPNRDLTLTPHLYSDVLPALEAQYRALTS
                     TGAYQVSGIVTDSRRLPAELNPGATSQRSIRGYFDTSGRFQLDPYWDISGSIRIASDR
                     TFLRRYDISRDDRLRSTVRLERIDPDSYFALTGWFTQTLRINDPQGQQPIALPEFDYR
                     RRFADPLLGGRIELQANTLAIGCTDGQDTQRAFASIRWDLRKLTPWGQEVTFTAFGRG
                     DVYHSDENQLSPTLVYRGTPGWQSRAIGAIAVDVRWPLIGPIGNGTQRITPRIQLVAT
                     PPIRNLAIPNEDARAIELEDSNL"
     gene            1756..3201
                     /locus_tag="VE567_08245"
     CDS             1756..3201
                     /locus_tag="VE567_08245"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013040746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HYZ48870.1"
                     /translation="MQVRFADARPQGGYDLALLAPQNGQAAGLAAAHAPLVRDAMRTA
                     RFEGEAGAVVELFVQEDGATRRLLIVGIGKGEPVDYEKAGAALVARLLTSGTERLVAE
                     LGGAAADHAARFAAGAALRAWRIDTYRTKLPPKQKPTLNEVVIVGANASGWDRQRAVV
                     EGVALARELVSEPPNLLYPESFVDRCRHLAELGVEITALDEAQMRELGMGALLGVSQG
                     SAREARLLVMRWDGTGGAQPDPVALVGKGVTFDTGGISLKPGPGMEDMKWDMGGAGAV
                     AGAMKALALRKAKAHVVGVCGLVENMPDGNAQRPGDIVTSMSGQTIEILNTDAEGRLV
                     LCDALTWVQRNHHPKTIVDLATLTGAMIISLGNEHGGMFANDDSLAGQLASAGQAVGD
                     KLWRFPLSDAYNKLIDSPIADMKNVGPREAGSITAAQFLQRFIEDGVRWAHLDIAGMV
                     WAQKPGILWEKGATGYGVRLLDRFVADNFES"
BASE COUNT          555 a         1079 c         1193 g          558 t
ORIGIN      
        1 aacaggttgc tgtcctccag ctcgatcgcg cgcgcgtcct cgttgggaat agccagattc
       61 cggatcggcg gagtcgccac gagttggatg cgtggcgtga tccgctgcgt gccgttgccg
      121 atcgggccga tcagcggcca ccgaacatcg acggcgatcg cgccgatcgc gcggctctgc
      181 cagcccggcg tgccgcgata gaccagggtg ggcgaaagct ggttctcgtc cgaatgatag
      241 acgtcgcccc ggccaaaggc ggtgaaagtc acttcctggc cccaaggcgt cagtttgcgc
      301 aaatcccagc ggatgctggc gaaagcgcgc tgcgtgtcct gtccgtcggt gcatccgatc
      361 gccagcgtgt tggcctgcag ctcgatgcgg ccgccgagca gcgggtcggc gaagcgccgg
      421 cgatagtcaa actccggcag tgcgattggc tgctggcctt gcgggtcgtt gatccgcagg
      481 gtctgggtga accagccggt cagggcgaaa tagctgtcgg ggtcgatgcg ctcgagccgc
      541 actgtcgagc gcagccggtc gtcgcgcgag atgtcgtagc gccgcaggaa ggttcggtcg
      601 gaggcgatac ggatcgagcc gctgatgtcc caataaggat cgagctggaa ccgcccgctc
      661 gtgtcgaaat agccgcgaat gctccgctgc gatgtggcgc cgggattgag ctcggcgggc
      721 aggcggcggc tgtccgtgac aatcccgctc acctggtagg cgccggtgct ggtcagcgcg
      781 cgatactggg cttcgagagc aggcagcaca tcgctataga gatgcggcgt aagcgtgaga
      841 tcgcggttgg gcgctaattg caaataatag ggaagggtga gttcgagacc gttgacgcgg
      901 ctgaacttga tgtccggcac cagcacgccg ctcccgccct gcccgcccgt cgggttggag
      961 agcaagggaa ggggaatcag cggcaggccg aacaggtgca gccgggctcc cttgtaataa
     1021 acgcgctgcc gggcggtgtt gtagatcacg cgcacggccg tgatcttcca ggtcggctct
     1081 ttcgggcagc cgttcgcgtc ctcgaccgag caggccgtat aagcggcgtt gtcgagcgta
     1141 tagacatcgc cttgacgcga gccgcggctg gcggcgagcc tcccgccgct ttccagtacc
     1201 accagcaggt tttcgacaac tccgtccctg agcgtgtcgg tgagctgcac cgagtcgcca
     1261 taggcgacgt cgccctgcgg gttggtcacc gcgacattgc cttcggcccg gacgtcaccg
     1321 gtcttgcggt tccaggtcac tttgtcggcg cgcaggcgat tgccttcgcg gaacatgcgc
     1381 acgtccccgg ccgcgacgac cgtgtcggtg tcgttggaat attcgagatt gtcggcactg
     1441 aagtcgacca cttgctggcc cgcaggcggc agtgcggacg aagcctcggg tggcggcggc
     1501 gcgaccgagc ggtcctgcag gttctgcgcg ccggccgcgg tcgccgcccc aaacccggcg
     1561 acgcccgcca gccagatcca cctttttgcg ttcacgctta ccccgaacca ccctgattga
     1621 ccggattgcg gccctctgcg ccgcgcctat cgcactcaag cggccggcct gcaaatcgtt
     1681 ccagaggggt tgcgggcgcc gtcaggaggc gtacaggcga gccaacgcgt taaaatagca
     1741 gaataaggag ttcccatgca ggttcgcttc gccgacgctc gtccgcaggg cggctatgac
     1801 ctggccctgc tcgcaccgca gaatggccag gcggcgggcc tggcggccgc gcatgcgccg
     1861 ctcgtgcgag atgcgatgcg caccgcccgc ttcgaaggcg aggccggggc ggtggtggag
     1921 ctgttcgtgc aggaggacgg ggcgacccgg cggttgctga tcgtcggcat cggcaagggc
     1981 gagccggtcg attacgaaaa ggccggcgca gcgctggtcg cgcggctgtt gacgtccggc
     2041 accgagcggc tggtcgcaga gctgggcggc gcggcagccg accatgccgc gcgcttcgcc
     2101 gcgggcgccg cgctgcgcgc ctggcggatc gacacctatc gcaccaagct gccgcccaag
     2161 cagaaaccga cgctcaacga agtggtcatc gtcggcgcga acgcgagcgg ctgggatcgt
     2221 cagcgtgcgg tggtcgaagg cgtggcgctc gcgcgcgagc tcgtttccga gccgcccaac
     2281 ctgctctatc cggaaagctt cgtggatcgc tgccggcacc tcgccgagct gggggtcgag
     2341 atcaccgcgc tcgacgaagc gcaaatgcgc gaactgggca tgggcgcgtt gctgggtgtc
     2401 agccagggct cggcgcgcga ggcgcggctg ctcgtcatgc gctgggacgg gacgggcggc
     2461 gcgcagccgg acccggtcgc gctcgtcggc aagggcgtga ccttcgacac cggcgggatt
     2521 tcgctgaaac ccgggcccgg catggaagac atgaagtggg acatgggcgg ggccggcgct
     2581 gtcgcgggcg cgatgaaggc cctcgcgctg cgcaaggcga aggcgcatgt cgtgggcgtc
     2641 tgcggtctgg tcgagaacat gccggacggt aacgcccagc ggccgggcga catcgtcaca
     2701 tcgatgtccg gccagacgat cgagatcctc aacaccgatg ccgaggggcg gttggtgctg
     2761 tgcgatgcgc tcacctgggt ccagcgcaat caccacccga agacgatcgt ggatcttgcg
     2821 acgctcaccg gcgccatgat catcagcctc ggcaacgaac acggcggcat gttcgcaaac
     2881 gacgattccc tcgccggaca gctggcgtcg gcgggccagg cggtcggcga caagctctgg
     2941 cggtttccgc tcagcgacgc ctacaacaag ctgatcgaca gcccgattgc cgacatgaag
     3001 aatgtcggtc cgcgcgaggc cggctcgatc accgcggcgc aattcctgca gcgcttcatc
     3061 gaagacggcg tgcgctgggc gcatctcgac atcgccggca tggtctgggc gcaaaagccg
     3121 ggcatcctct gggagaaggg cgcgactggc tacggcgtcc gcctcctcga ccggttcgtc
     3181 gcggataatt tcgaaagcta gtcgcggctc ttcgatcgcc aaacgcagct cgccgctcgg
     3241 caaacgcagc ccgtcatccc gaacttgttt cggggcaagg gtggggcagc tccgcttcag
     3301 ggagtaggct tggaggcgcc gggcctttcc ccaaccgctc ttcgctctcg cgcttgtccc
     3361 gaaacaagtt ggatgacggc aggga
//
LOCUS       DASQVK010000382         3525 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_89107, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000382 DASQVK010000000
VERSION     DASQVK010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3525
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89107"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..341)
                     /locus_tag="VE567_08250"
     CDS             complement(<1..341)
                     /locus_tag="VE567_08250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope biogenesis protein TolA"
                     /protein_id="HYZ48871.1"
                     /translation="MNVDGTDLMDRAEKIGLGAATAGHIVLFGLLSVGFLATPNPLKI
                     ERHPVEVTFAKDVGLEASAPRAARQPPATSVAPELGKPEEAAREPQAAHPQQPAPAPA
                     EPAPAPVPTPNP"
     gene            complement(331..753)
                     /gene="tolR"
                     /locus_tag="VE567_08255"
     CDS             complement(331..753)
                     /gene="tolR"
                     /locus_tag="VE567_08255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020486652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098567 - periplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0061024 - membrane organization [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolR"
                     /protein_id="HYZ48872.1"
                     /translation="MAVKLPSDSRGRGRPPMSEINVTPLVDVMLVLLIIFMVTAPLLT
                     AGVPVNLPQSKASALKQEKEPVTISIERTGQIHIGEELVAEDALGNRFASLAKSEPPQ
                     IYLRADRSLDYGAVMRVLGELNRAGLNKVALVSVGDER"
     gene            complement(753..1448)
                     /gene="tolQ"
                     /locus_tag="VE567_08260"
     CDS             complement(753..1448)
                     /gene="tolQ"
                     /locus_tag="VE567_08260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolQ"
                     /protein_id="HYZ48873.1"
                     /translation="MDQLFVNTNATTLSPIGLFLQADWVVKAVMLGLLLASIWTWTMI
                     IGFGFKLRRAVAASERFERDFWKAQDVDRFYERRGEEDVPVARVLDAGLKEWRRSTSA
                     RKVDAEGVRSRLATLMASASAAEVDALSGRLNVLATIGSVAPFVGLFGTVWGIMRSFT
                     SIAAEQNSSLAVVAPGIAEALFATAIGLFAAIPAVIAYNRFSHGLNRLEARMLRFADK
                     FHATLSRELDAEA"
     gene            complement(1451..1903)
                     /locus_tag="VE567_08265"
     CDS             complement(1451..1903)
                     /locus_tag="VE567_08265"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbgC/FadM family acyl-CoA thioesterase"
                     /protein_id="HYZ48874.1"
                     /translation="MDREDLPARGRFVGREHRFPVRVYFEDTDLSGLVYHANYLRFME
                     RARSDMLAAAGIDQRAAWEAGEGVYVIADLHIRYRSPARLDDALLVASTLERFAAASA
                     TIHQRVMLGREVLAEATVLAAFVAPGGGRPRRQPRDWLTIFKGLLKEH"
     gene            2025..2843
                     /locus_tag="VE567_08270"
     CDS             2025..2843
                     /locus_tag="VE567_08270"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008995669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYZ48875.1"
                     /translation="MADLLIHSMAEFEPLLTGVLTIAGAANLVEIGAEFGGTTPIFAA
                     HAAAMGGSLTSIDPSPKREFLDWLAGHPHVRHVAALSLEAIEAMQGVDAWIVDGDHNW
                     YTVYHELEAIDRVCRRDGKPMLVLLHDVAWPCARRDFYYAPGRIPAEFRHPYDYDGGA
                     VPGRAELVLGGGFRGMGHFAWAVREGGPRNGVLTAIEDFKAESERDLAFAEVPAVFGL
                     GILFDADAPWGEALGRALLPYHKHPLIAALEQNRLANYLRVIELQDAMAAKAAA"
     gene            complement(2857..>3525)
                     /gene="ruvB"
                     /locus_tag="VE567_08275"
     CDS             complement(2857..>3525)
                     /gene="ruvB"
                     /locus_tag="VE567_08275"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004209282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HYZ48876.1"
                     /translation="AVEEVLYPAMEDRALDLMIGDGPSARSVRIDLPRFTLVGATTRQ
                     GLLTTPLRDRFGIPIRLNFYTVDELEHVVRRAASLLQLGIADDGAREIAKRSRGTPRI
                     AGRLLRRVRDFANVAGEPVVHADVADKALNRLEVDHLGLDAMDRRYLRMIADIYRGGP
                     VGVETLAAGLSEPRDTIEEVIEPYLIQLGLIARTARGRCLNGPGWKHLGLNPPANGQE
                     GLFD"
BASE COUNT          580 a         1202 c         1177 g          566 t
ORIGIN      
        1 gggttcggcg tcgggacagg cgcaggggcc ggttcggccg gagcaggcgc gggctgttgc
       61 gggtgcgcgg cctgaggctc ccgcgcagct tcctcgggtt tgcccagttc cggcgcgacg
      121 ctggtggcgg gcggctggcg ggcggcgcgg ggcgcgctcg cttcgagccc gacatccttg
      181 gcgaaggtga cttcgaccgg gtggcgctcg atcttcagcg ggttgggcgt ggcgagaaag
      241 ccgaccgaga gcagcccgaa caggacgata tgtcccgcgg tcgcagcccc caggccgatt
      301 ttctccgccc ggtccatcag gtccgtcccg tcaacgttca tccccaacgc tgaccagcgc
      361 aaccttgttc aggccggcgc ggttgagctc gcccagcacg cgcatcaccg cgccataatc
      421 gagtgatcga tcggcgcgga gatagatttg cggcggctcg cttttggcca ggcttgcgaa
      481 cctattgccg agtgcgtcct ccgccacgag ctcctcgccg atatggattt ggccggtccg
      541 ctcgatcgag atggtgaccg gctctttttc ctgcttgagc gcactggcct ttgattgggg
      601 caggttcacc ggcacgcccg cggtcagcag cggcgccgtg accatgaaga tgatcagcag
      661 caccagcatg acgtcgacga gcggcgtcac attgatctct gacattggcg gccgcccccg
      721 gccccggctg tcggagggaa gcttgaccgc catcaggctt ccgcgtccag ttcgcgggac
      781 agggtcgcgt ggaatttgtc ggcaaagcgc agcatccgcg cctcgagccg gttcaggccg
      841 tggctgaagc ggttatacgc gatcaccgcc gggatcgcgg caaacaggcc gatcgcggtc
      901 gcgaacagcg cctcggcaat gccgggggcg accaccgcca gcgacgaatt ctgctcggcc
      961 gcgatcgagg tgaagctgcg catgatgccc cagacagtgc cgaacagccc cacgaacggg
     1021 gcaacgctgc cgatcgtcgc cagtacattg agccggcccg aaagcgcgtc gacttcggcc
     1081 gcgctggcgc tcgccatcag cgtggcgagg cgcgagcgca cgccttccgc gtccaccttg
     1141 cgcgccgagg tggagcgacg ccattccttc agccccgcat cgagcacgcg ggcgacgggc
     1201 acgtcctcct cgccgcgccg ctcgtagaag cggtccacgt cctgcgcttt ccagaaatcg
     1261 cgctcgaacc gctccgaggc cgcgaccgcc ctgcgcagct tgaagccgaa gccgatgatc
     1321 atcgtccagg tccagatgct ggcgagcagc agccccagca tcaccgcttt caccacccaa
     1381 tcggcctgga ggaagaggcc gatcggcgac agcgtcgtcg cattcgtgtt cacgaaaagc
     1441 tgatccaaac ctagtgttcc ttcaacaatc ccttgaagat ggtcagccag tcgcgtggct
     1501 ggcggcgcgg cctgccgccg ccaggggcga cgaacgcagc gagcaccgtc gcctcggcca
     1561 aaacttcccg ccccaacatg actcgctgat gaatggttgc gcttgcggcc gcaaagcgct
     1621 cgagcgtgct ggccacgagc agcgcgtcgt cgagccgcgc ggggctgcgg tagcggatgt
     1681 gcaggtcggc gatcacataa acgccctcgc ccgcttccca cgccgcgcgc tggtcgatgc
     1741 cggcggccgc gagcatgtcc gaccgcgccc gctccatgaa gcgcagataa ttggcgtgat
     1801 agacgaggcc ggacaggtcc gtgtcctcga aatagacgcg taccgggaaa cgatgctcgc
     1861 ggccgacgaa gcggccgcgg gcgggcaggt cctctcggtc catgccgcgg gccttaaggg
     1921 gcagctgccg cgatgagaac ccccgaacgc acccatggtt aacggatttg atagggttcg
     1981 ccgcctaggg cggccgcctg ggcccatttg cacgggggaa gatgatggcc gacctgctga
     2041 tccattccat ggccgagttc gagccgctcc tgaccggcgt tctcacgatc gccggcgccg
     2101 ccaatctggt tgaaatcggg gcggaattcg gcggcacgac accgatattt gcggcccatg
     2161 cggcagccat gggcggcagc ctcaccagca tcgatccgag ccccaagcgg gaattcctcg
     2221 attggctggc aggccacccc catgtccgcc acgtcgcagc gctgagcctt gaagcgatcg
     2281 aggcgatgca gggcgtggac gcctggatcg tcgatggcga tcacaattgg tacaccgtct
     2341 atcacgagct ggaagcaatc gaccgcgtct gccggcgcga tggcaagccg atgcttgtcc
     2401 tgctccacga cgtcgcctgg ccctgcgccc gccgcgattt ctactatgcg cccggtcgga
     2461 tcccggcgga gttccgccac ccctatgatt atgatggcgg cgccgtgccc ggccgggccg
     2521 agctggtgct cggcggcggg tttcggggca tgggccattt cgcctgggca gtgcgcgaag
     2581 gcggcccccg caacggcgtc ctgactgcga tcgaggattt caaggcagag agcgagcgcg
     2641 acctggcctt tgccgaagtg ccggcggtgt tcgggctcgg catccttttc gacgccgatg
     2701 cgccttgggg cgaggcgctc ggccgcgcct tgctgcccta tcacaagcac ccgctgatcg
     2761 ccgcgctgga gcagaaccgg ctggcgaatt acctccgcgt catcgagctg caggacgcaa
     2821 tggcggccaa ggccgcggcc tgacgcattc gcggcatcaa tcgaacagcc cctcctgccc
     2881 gttggcaggc gggttgaggc cgagatgctt ccagccgggc ccgttgaggc agcggccgcg
     2941 ggcggtgcgg gcgatcaggc ccaattggat cagatagggc tcgatcactt cctcaatcgt
     3001 atcgcgcggc tccgacaagc cggcggccag cgtctccacg cccaccggtc cgcctctgta
     3061 aatgtcggcg atcatgcgaa ggtagcgccg gtccatcgca tcgaggccca ggtgatcgac
     3121 ctcgagccgg ttgagcgcct tgtcggcgac atcggcatgc accaccggct cgcccgcgac
     3181 attggcgaaa tcgcgcacgc gccgcagcag ccgcccggca attcgcggcg tgccgcgcga
     3241 gcgcttcgcg atctcgcgcg cgccgtcgtc ggcgatgccg agctgcaaca ggctcgccgc
     3301 acggcgcacc acgtgctcca gctcatcgac cgtgtagaaa ttgagccgga tcggaatacc
     3361 gaaccggtcg cgcaagggcg tggtcagcag gccctggcga gtggtcgcgc cgaccagggt
     3421 aaaacgcggc aagtcgatcc gcaccgaccg cgcggacggg ccatcgccga tcatcagatc
     3481 gagcgcgcgg tcctccattg ccgggtagag cacttcctcg acggc
//
LOCUS       DASQVK010000383         3611 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_467695,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000383 DASQVK010000000
VERSION     DASQVK010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3611
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_467695"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            125..835
                     /locus_tag="VE567_08280"
     CDS             125..835
                     /locus_tag="VE567_08280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019831972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYZ48877.1"
                     /translation="MGTEQKVVIITGASQGIGADLVKGYRDRNYRIVANSRSIKPAAD
                     PDILAVAGDIADPKTADRIVEQALARFGRIDSLVNKAGIFIAKPFTDYTDEDYASVLS
                     VNLGSFFHVTRRVAAEMLKQRSGHIVQVTTSLVDHANSSVPSLLASLTKGGLNAATKS
                     LAIEYPKKGIRVNAVAPGIIKTPMHTPETHEFLANLHPVGRMGETRDIVDAVLFLESA
                     AFVTGEILHVDGGQSAGH"
     gene            868..1116
                     /locus_tag="VE567_08285"
     CDS             868..1116
                     /locus_tag="VE567_08285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011542630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HYZ48878.1"
                     /translation="MPIVTIKVTREGTALGAVSVTPEQKAALIKGASQLLLDVLDKPL
                     ESTFVVIDEVELENWGWGGLPGPEYRRKLARDRKTSAN"
     gene            1191..2438
                     /locus_tag="VE567_08290"
     CDS             1191..2438
                     /locus_tag="VE567_08290"
                     /inference="COORDINATES: protein motif:HMM:NF018485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbfB/YjiJ family MFS transporter"
                     /protein_id="HYZ48879.1"
                     /translation="MSMSSSNASRHHAATSHHRQQGGPAWLAAAAGLSASLVGLGLAR
                     FAYTPLIPALIAAKWFTPAEAVYLGAANLAGYLAGALIARELANRAGAVRTLRGMMVL
                     AALCCFACSVPISFIWFFGWRFLAGLTGGVIMVLAASTILPHVAPSKRGLVGGVIFAG
                     VGLGIAASGTLVPLLLQQGLKQSWYGLGILSAVLTLLSWKAWPADTAATQHASAHPQS
                     HGPRLTLVRVLSAEYGLNALALVPHMVFLVDFVARGLGQGISAGSRYWVLYGIGAIAG
                     PLLTGHLADRAGFGPALRVSFLVQAIAILLPALSTAPAALIVSALVVGGFTPGIVPLV
                     LGRIHELVPHSSTGQRAAWAQATTAFALFQAAAAYGLSYLFERTGGDYAILFVIGAGA
                     VAAALMVDLVAALASERGARAGT"
     gene            2494..2706
                     /locus_tag="VE567_08295"
                     /pseudo
     CDS             2494..2706
                     /locus_tag="VE567_08295"
                     /inference="COORDINATES: protein motif:HMM:NF042609.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2822..3214
                     /gene="radC"
                     /locus_tag="VE567_08300"
     CDS             2822..3214
                     /gene="radC"
                     /locus_tag="VE567_08300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018065906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HYZ48880.1"
                     /translation="MQRRTALSSWNDVIDYCRTSMAAAFADKEQFRLLFLDKRNQLIS
                     DEVQQTGTVDHTPVYPREVIKRALELSATALILVHNHPSGDPTPSQADIQMTKAIVDI
                     AKPLGISVHDHIIVGKNGHASLKGMRLI"
     gene            complement(3211..>3611)
                     /locus_tag="VE567_08305"
     CDS             complement(3211..>3611)
                     /locus_tag="VE567_08305"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HYZ48881.1"
                     /translation="STEMRSVVVEREIAYPPEKIWRALTQPHLIQEWLMKNDFKPVVD
                     HRFNLRADWGAVDCQVLAVEPNKTLSYTWAAYGLESIVTWTLTPTSSGTHLRMEQSGF
                     RTDQQQAYQGAKFGWQKFFANLEQVLARNV"
BASE COUNT          635 a         1189 c         1126 g          661 t
ORIGIN      
        1 aagactatct gccgaatgac gggcattcgc ccgatccctg catcagccta gcttgatctc
       61 accggtgccg aactggcccg gcggcattcc tgccgcgtca tttacgagat catggaggcc
      121 catcatgggt acagaacaga aggtcgtcat catcaccggc gcgtcgcaag gcattggcgc
      181 cgatctggtc aagggctatc gcgaccgcaa ctaccgcatc gtcgccaatt cgcgctcgat
      241 caagccggcc gcggatccgg acattctcgc cgtcgccggc gacatcgccg atcccaagac
      301 cgcggaccgg attgtcgagc aggcgctggc gcgcttcggc cgcatcgaca gcctggttaa
      361 caaggccggc atcttcatcg ccaaaccgtt caccgactat acggacgaag attatgcctc
      421 ggtgctatcg gtcaatctcg gaagcttctt ccatgtcacg cggcgcgtcg ccgccgaaat
      481 gctgaagcag cgttccggcc acatcgtgca ggtcacgacc agcctggtcg atcacgccaa
      541 ctccagcgtt ccttcgctgc tggcctcgct gaccaagggc ggcctgaacg ccgcgaccaa
      601 atcgctggcg atcgaatacc cgaagaaggg cattcgggtt aacgccgttg cgcccggcat
      661 catcaagact ccgatgcata cgcccgaaac gcacgagttc ctcgccaacc tgcatccggt
      721 cggacgcatg ggcgagacca gggacatcgt cgatgcggta ctgtttcttg aaagtgctgc
      781 gttcgtcacc ggcgagatcc tgcatgtcga tggcggccag agcgccggcc attgatcgca
      841 gcagcacgat catcgaggac aatcgacatg cccatcgtca ccatcaaggt cacgcgcgaa
      901 ggcacggctc taggagccgt gtccgtcacg cccgaacaga aggcggccct gatcaagggc
      961 gccagccaat tgctgctcga cgtgctcgac aagccgctcg aatcgacctt cgtcgtcatc
     1021 gacgaggtcg agctggagaa ctggggctgg ggcggcctgc ccgggcccga gtatcgcagg
     1081 aagctcgcaa gagatcgcaa gacctccgcg aattgaagcg tgccatcttt gccggcgatg
     1141 gctgcgatct gaactgatca tttttcttcc cgaagcaacg ggcctaaccc atgtccatgt
     1201 cgagcagcaa cgccagtcgt caccatgcgg caacatcgca tcatcgccag caaggcgggc
     1261 ccgcatggct cgccgccgcg gcgggattat ccgcttcgct ggtcgggctc gggctggcac
     1321 gctttgccta cacgccgctg attccggcgc tgatcgcggc aaaatggttc acccctgcgg
     1381 aagcggttta tctcggcgcc gccaacctcg ccggctatct cgccggcgcg ctgatcgcgc
     1441 gcgagctcgc caatcgcgca ggcgccgtgc gcacactgcg cggcatgatg gtgctggcgg
     1501 cgctgtgctg tttcgcctgt tcagtaccga tctcgttcat ctggttcttc ggctggcgct
     1561 tccttgccgg cctgaccgga ggcgtgatca tggtgctcgc cgcctcgacc atcctgccgc
     1621 atgtcgcgcc cagcaagcgc ggcctggtcg gcggcgtgat ctttgcgggg gtcggcctcg
     1681 gcatcgccgc atcgggcact ctggtaccgc tgttgctgca gcaaggcctg aagcagagct
     1741 ggtatggcct ggggatcctg tcggcagtcc tgacattgtt gagctggaag gcctggcccg
     1801 cggacaccgc ggcgacgcaa cacgcgtcgg ctcatccgca atcgcacggc ccgagattga
     1861 ccctggttcg cgtgctgagc gcggaatatg gcctcaacgc gctggcgctg gtgccgcata
     1921 tggtctttct ggtcgacttc gtcgctcgcg gcttgggcca gggcatatcg gccggatcgc
     1981 gctactgggt gctctacggc atcggcgcga tcgccggtcc gctattgacc gggcatctcg
     2041 ccgatcgcgc cggatttgga cctgcgctgc gcgtgtcgtt tctggtccag gcgatcgcga
     2101 tcctgttgcc cgcgctcagc accgcgccgg ccgcgctgat cgtctcggcg ctggtcgtcg
     2161 gcggcttcac gcccggcatc gttccgctgg tgctcggccg catccacgag ctcgtgccgc
     2221 acagcagcac cggccagcgc gccgcctggg cgcaggcgac cacagcgttt gcgctattcc
     2281 aggcggccgc cgcttatggt ctctcctatc tgttcgaacg gaccggcggc gactatgcga
     2341 tcctgttcgt gatcggcgcc ggcgcggttg ccgccgcgct gatggtcgac ctcgtcgcgg
     2401 cgctcgcaag cgaacgcggc gcacgcgctg gaacgtgaga ccgccacata attatgattg
     2461 aaaaattcgg tgagcacggc atggttgtcg ccgatgcccg cggcgaagac cagcgatagc
     2521 aaggaccagg ccgagacgcc gcattaccac ggccatcgcg agcggctgcg cgagcgcttt
     2581 tacgccgccg gacccgacgc gctgagcgat tatgaactgc tggagatggc gctgtttccg
     2641 gcattgcccc ggcgcgacac aaaaccgctc gccaaggcgc tgctcaagac cttcggctca
     2701 ttcgccgaag tgatccacgc cccggtcgcg cggctgcgcg aaatcgaggg cattggcgaa
     2761 gcctcgatca accagctcaa attgatcgcg gcggcggcga gccgggttgc caaggggcga
     2821 agtgcagcgg cgcaccgcgc tgtcgtcgtg gaacgacgtc atcgactact gccgcaccag
     2881 catggcggcg gcgtttgccg acaaggagca gtttcgcctg ctgttcctcg acaagcgcaa
     2941 ccagctgata tcggacgagg tacagcagac cggtacggtc gaccacaccc cggtctatcc
     3001 gcgcgaggtg atcaagcgcg cgctggaatt atcggcgacc gcgctgatcc tggtgcacaa
     3061 ccacccttcc ggcgatccga ccccgtcgca ggccgacatc cagatgacca aggcgatcgt
     3121 cgacatcgca aagccgctcg gcatttccgt gcacgaccac atcatcgtcg gcaagaacgg
     3181 gcacgcgagc ttgaagggaa tgcggttgat ttagacattc cgcgccagga cctgctccag
     3241 gttggcaaag aacttctgcc agccgaattt ggcgccctgg taggcctgct gctgatcggt
     3301 gcggaagcct gactgctcca tgcgcagatg ggtcccgctg cttgtgggcg tgagagtcca
     3361 ggtgacgatg ctctcgaggc cataggccgc ccaggtgtag gacagcgtct tgttcggctc
     3421 gacggccagg acctgacagt cgacagcgcc ccagtcggcg cgaagattga aacggtggtc
     3481 caccacaggc ttgaaatcgt tcttcatcag ccactcctgg atcaggtgcg gctgggtgag
     3541 cgcgcgccag atcttttccg gcggataagc tatctcccgt tcgacaacga cggagcgcat
     3601 ttcggtcgat g
//
LOCUS       DASQVK010000384         6518 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_310432,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000384 DASQVK010000000
VERSION     DASQVK010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6518
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_310432"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..745)
                     /locus_tag="VE567_08310"
     CDS             complement(<1..745)
                     /locus_tag="VE567_08310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF475 domain-containing protein"
                     /protein_id="HYZ48882.1"
                     /translation="MLRYFGTSFVFTALCLAIGAWLGWAVTGTLAGTLGILWIIAVLG
                     VLETSLSFDNAVVNATVLKDMAPVWRKRFLSWGIVVAVFGMRIVFPLAIVAIAARLNP
                     LAALALAIEQPAEYERILTGAHLGIAGFGGAFLAMVGLTFFLDGDKDTHWIGFLERPV
                     SGLSGVASAPLALSLLALIGVAQLLPADETITFLTAGIFGLIAYVAVDSIGDLIGGGE
                     GDAARVARAGIGGFLYLEMLDASFSFDGVI"
     gene            complement(760..1923)
                     /locus_tag="VE567_08315"
     CDS             complement(760..1923)
                     /locus_tag="VE567_08315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerD family protein"
                     /protein_id="HYZ48883.1"
                     /translation="MDLQQGANAPVAGERASVRFDWRAPSGVEADASAYLLAAGGKVR
                     GDHDMIFYNQPAGGEGAIRFAPNGGAGSFDVDLAALPRDVERVVFCATIHEANSRGQT
                     LALLQDAAISVDGALRFAPPLADAREAAMVFGELYRRNGAWKFRAVGQGFNGGLAPLA
                     RSFGIDVAEPPAPSRSPAPEAKPAPPPAPPPVSLSKVTLDKKGQTVSLEKRGSSFGEI
                     VVNLNWSRARGWLAGGAVDLDLGCLFELADGRRGVVQALGHVFGEFDRPPWIALSGDD
                     RTGDVADGETLRINGARWAEIRRVCVFANIYDGAPNWQKTDGVVLVTMPDQPPIEVRL
                     TEGRNDKRLCGIVMLENEGGRLKATRLLDYVRDQEELDRRHGWGLRWVAGRKD"
     gene            2090..>6518
                     /locus_tag="VE567_08320"
     CDS             2090..>6518
                     /locus_tag="VE567_08320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA domain-containing protein"
                     /protein_id="HYZ48884.1"
                     /translation="MTGDAAALTRLKELIDYVAATERDKLAIPTDIAGERGFRAMGAE
                     LVKLPGVHLNGGGEGDPLWASIDRLAKSKPPRPGDVELAVWADVPDEADKKPSLKSEA
                     PVAALRGAGLMSDDEAADEPVTIALSAYAGRDRVQASLDAFVREVWTPWADEERPRRR
                     AIKLYTELFALRHALDGGGDVPAELVCGIGMAEWTRPLGKLNHPLLTIQLEIAINEES
                     HAIELRPRSEAPPGIESDPLDKLDVTGVEEWRRFTLGFLDGLANGLSPFAPESFEPVL
                     RRAVALLDPNGHYRPDLHPGQQASPDSLLVSDSWMLLARARRATQVMADLQRLGEAVT
                     QAEQPDSLPDAVRAIVTGPSESVPDQNPKAFRGVSTVPGITTSDGTGADLYFPKPFNA
                     EQVEVIQRLESRPGVVVQGPPGTGKTHTIANIVSHYLALGKRVLVTSQKAPALKVLRD
                     KLPAGVRPLAVSLLESDRDGLQQFQDSVDEIAARLQRIKPREMRQQIAEFDARIERIH
                     AELAANDREVDRLGRAGLTAAELDGRRIEPVEAARTVAAAPDLTTWLPDAVDVIRSHD
                     PGFGDEDIAALREARKRVGDRLTYLDVTLPAPEALPDPEAIEQLQRDLAEAEQLDRSL
                     TSTERLAEGVSAEALATGTARLDGLAALHARIAESGFGWTAAALALVRRNPRDAALKA
                     IVGLAPRIDAGCAEALYFLTVPVRLPEGADEQDFRDPVANLAARGELGIFTTLFARQV
                     KQRIAAVRIAGRVPNGAADWAAVKRFLEARDAARELVAIWNHAAAATPLDPIAETEGL
                     RAPEAMKAQLDALALVREAVMLEAEAQKAEATLLPGWTRPVADSAAEARAVLDRHLRR
                     LRLQEARRRLSALQASLIDAPGALGQTLRGFVHDRLGAGGETPEALGRAWRTLLDELR
                     QIRALGPDFATIRGVALEIEESGAPLWARQLCERAVDGVEDPLTPGDWRERWRLRRLA
                     TWLDRIDAHHRIRELSRRRGELEAQLARAYEDVIELRTWCALAEKASDQVRSALSAYA
                     QAMRRIGRGTGIRAARYRQDARSAADRAKNALPCWIMPHYRVSESLPAELGLFDLVII
                     DEASQSTIGALPALLRARQVLIVGDDKQVSPDAGFRSEDKLVELSRRYLSGQVEDFRA
                     ALREDKSLYDLGSVVFAGGAIMLKEHFRCVAPIIEFSKAQFYDHKLQPLRLPSASERL
                     DPPLIDILVEDGFRSGDVNRPEVACILDEIARIAADPAMAARAIGVTTLLGQKQAMLI
                     QEAIEQQLGPELMLRHDIRVGDPSAFQGDERDIMFLSLVADRSASTISGLGFEQRFNV
                     AASRARDRMVLVRSVEPEELRASDKLRRALIQHFRAPFAADSKLNEDRRKRCESPFEE
                     EMFDLLVERGYRVDTQVPVGHKRIDLVVEGGEDRRLAIECDGDAFHGPERWGEDMARQ
                     RMLERAGWRVWRCFASRFVRDREGVLRELVETLDALDIAP"
BASE COUNT         1108 a         2158 c         2298 g          954 t
ORIGIN      
        1 cgatcacgcc gtcgaaggag aaggaagcgt cgagcatttc caggtagagg aagccgccga
       61 tgccggcgcg cgcgacccgg gccgcatcgc cttcgccgcc gccgatcaga tcgccgatgc
      121 tgtccaccgc gacataggcg atcaggccga aaatgccggc agtgaggaac gtgatcgtct
      181 cgtccgccgg cagcaattgc gcgacgccga tcaaggcaag cagcgagagg gcgagcggag
      241 ccgaagcgac gccggacagg cccgagaccg ggcgttccag aaagccgatc caatgcgtgt
      301 ccttgtcgcc gtcaaggaag aaagtgaggc cgaccatcgc gaggaaagcg ccaccgaagc
      361 cggcgatgcc gagatgcgcg ccggtcagga tccgctcata ttcggcgggc tgctcgatcg
      421 cgagggcgag cgcggcgagc gggttgagcc tcgccgcaat cgccacgatc gcgagcggga
      481 agacgattcg catcccgaac actgcgacca cgatgcccca gctcaggaaa cgcttgcgcc
      541 agacgggcgc catatccttc agcaccgtag cgttgacgac cgcgttatcg aatgaaagcg
      601 aggtctccag cacgccgagc acggcgatga tccagagaat gccgagcgtg ccggccaagg
      661 tgccggtcac ggcccaaccc agccaggcgc cgatcgcgag gcacaaagcg gtaaagacga
      721 aagacgtgcc gaaatagcga agcaccggac ttctccccat caatccttgc ggcccgcgac
      781 ccagcgcagg ccccagccgt ggcggcggtc cagctcttcc tggtcgcgga cataatcgag
      841 gagccgggtc gccttgaggc ggccgccctc gttctcgagc atcacgatcc cgcacagacg
      901 cttgtcgttg cggccttcgg tcaggcgcac ttcgatcggc ggctgatcgg gcatcgtgac
      961 aagcaccacg ccgtcggttt tctgccaatt gggcgcgccg tcataaatgt tggcgaatac
     1021 acagacgcgg cggatctccg cccagcgcgc gccattgatc cggagcgtct cgccatccgc
     1081 gacatcgccg gtgcggtcat cgcccgacaa cgcgatccag ggcgggcgat cgaattcccc
     1141 gaagacatgg cccagcgcct ggaccacgcc tctacggcca tccgccagct cgaacagaca
     1201 gccgagatcg aggtcgaccg cgccgcccgc gagccagccg cgagcgcgcg accaattgag
     1261 gttcacgacg atctcgccga acgagctgcc gcgcttttcg aggctgactg tctggccctt
     1321 cttgtcgagc gtgaccttgg acaggctgac cggcggcggg gcaggcgggg gcgcgggctt
     1381 tgcttccggt gccggcgacc gcgaaggcgc cggaggttcg gccacatcga tcccgaacga
     1441 tcgggcgagc ggcgcgagac cgccgttgaa gccttggccc accgcgcgga atttccacgc
     1501 gccgttccga cggtaaagct caccgaatac catggcggct tcgcgggcat cggcgagcgg
     1561 cggagcgaag cgcagcgcgc catccaccga aatggctgca tcctgcagca gcgcgagcgt
     1621 ctgtccgcgg ctgttcgcct cgtggatggt cgcgcagaag acgacgcgct ccacatcccg
     1681 cggcagagcg gcgagatcga cgtcgaagct gccggcgccc ccgttcgggg cgaagcggat
     1741 cgcgccttcg ccgcccgccg gctgattgta gaagatcatg tcgtggtcgc cgcgcacttt
     1801 gccgccagcg gcgagcaaat aggccgacgc atccgcctcg actcccgacg gcgcgcgcca
     1861 atcgaaccgc accgatgcac gctcgcctgc gacaggcgca ttggccccct gttgaaggtc
     1921 cattgccgaa ccaatccccc ttaccgccga ctctggcggc gccgcaaaga tggcgcgggg
     1981 acccgtggcc ggtcacggcg aacatgatcc gttttggacg caatcgcgct cgggaaacgc
     2041 ctgcggaagg ctatgcaagc ggccggcagc gaagggggtg acggcggcca tgaccgggga
     2101 tgcggcggcg ctcacgcgcc tcaaggaatt gatcgactat gtcgccgcga ccgagcgcga
     2161 caagctggcg attccaaccg acatcgcggg cgagcgcggg ttccgcgcta tgggcgcgga
     2221 gctcgtcaag cttcccggcg tccatctgaa cggcggcggg gagggcgacc cgctctgggc
     2281 gagtatcgac cggctcgcca agtccaagcc gccgcgcccc ggcgacgtcg agctcgccgt
     2341 ctgggccgat gtgccggatg aagcggacaa gaagcccagc ctcaaaagcg aggcgcccgt
     2401 cgcggcgctg cgaggggcgg ggctgatgag cgatgacgaa gcggccgatg agccggtcac
     2461 gatcgcgcta tcggcttatg ccgggcgcga ccgggtgcag gcgagcctgg acgcattcgt
     2521 gcgcgaggtc tggacgccct gggcggacga ggagcggccg cgcaggcgcg cgatcaagct
     2581 ctacaccgag ctgtttgcgc tgcggcacgc gctcgacggc ggtggcgatg tgccggccga
     2641 gctcgtctgc ggcatcggca tggccgaatg gacgcggccg ctgggcaagc tcaatcaccc
     2701 gctgctgacc atccagctcg aaatcgcgat caacgaggag agccacgcga tcgagcttcg
     2761 cccgcgctcc gaagcgccgc cgggaatcga gagcgacccg ctcgacaagc tcgacgtgac
     2821 cggcgtcgag gaatggcggc gcttcacgct gggctttctc gacgggctgg cgaacgggct
     2881 ttcgcctttc gcgccggaaa gcttcgaacc ggtgctgcgg cgagcggtcg cgttgctgga
     2941 ccccaatggc cactaccggc ccgacctgca tccgggccag caggcttcac ccgactcgct
     3001 gctggtgagc gacagctgga tgctcctcgc acgggcgcgg cgggcgacgc aggtgatggc
     3061 cgacctgcag cggctcggcg aagcggtgac gcaggcggag caacccgatt cgcttcccga
     3121 tgcggtgcgc gcgatcgtca ccgggcccag cgagtcggtg cccgaccaga acccgaaggc
     3181 gtttcgcggc gtctcgacgg tgccgggaat caccacttcg gatggaaccg gggccgatct
     3241 ctatttcccc aagccgttca acgcggagca ggtggaggtc atccagcggc tggaaagccg
     3301 gccgggcgtg gtggtgcaag ggccgccggg caccggcaag acgcacacca tcgcgaatat
     3361 cgtcagccac tatctggcat tgggcaagcg cgtgctggtg acgtcgcaaa aggcccctgc
     3421 tctcaaggtg ctgcgcgaca aattaccggc cggcgtgcgg ccgctcgccg tcagcctgct
     3481 ggaaagcgac cgcgacgggt tgcagcaatt ccaggattcg gtcgatgaga ttgcagcgcg
     3541 gttgcagcgg atcaagccgc gcgaaatgcg ccagcagatc gccgagttcg acgcgcgcat
     3601 cgaacgcatc catgccgagc tggctgcgaa cgaccgcgaa gtggatcggc tcggccgtgc
     3661 cgggctgact gcggccgagc tcgacgggcg gcggatcgaa ccggtggaag cggcacgtac
     3721 cgtcgcagcc gcgccggatc tgaccacatg gctgccggac gcggtcgacg tgatccgatc
     3781 gcacgatccc ggctttggcg atgaggacat cgcggcgctg cgcgaggcac gaaagcgcgt
     3841 gggcgaccgg ctcacctatc tcgacgtgac gctgccagcg cccgaggcgc tgccggaccc
     3901 cgaagccatc gagcagctcc aacgcgatct ggccgaagcc gagcagctcg accgctcgct
     3961 gacgtcgacg gagcggctgg cggagggcgt ctcagccgag gcgctggcga ccggaacggc
     4021 gcggctcgat ggccttgccg cgctgcacgc acgtatcgcc gagagcgggt tcggctggac
     4081 tgctgcggcg ctggcgctgg tccggcgcaa tccgcgcgac gctgcgctga aagcgattgt
     4141 cgggctcgcg ccgcggatcg acgcgggatg tgcggaggcg ctgtatttcc tcacggttcc
     4201 ggtccgcctg cccgaaggcg cggatgagca ggacttccgc gatcccgttg ccaatttggc
     4261 ggcgcggggc gaactcggca ttttcacgac gctattcgcg cggcaagtga agcagcgcat
     4321 cgcggcagtg cgcatcgccg ggcgcgtgcc gaacggagct gcggattggg ccgcagtgaa
     4381 gcgcttcctc gaagcgcgcg acgcggcgcg ggagctggtg gcgatctgga accatgccgc
     4441 cgccgcgact ccgttggacc cgatcgccga aacggaaggg ctgcgtgcgc cagaggcgat
     4501 gaaagcgcag ctcgacgcct tggcgctcgt ccgcgaggcg gtcatgttgg aagcggaagc
     4561 gcagaaagcc gaggcgacgc tgctgcccgg ctggacgcgg ccggtggcgg acagcgccgc
     4621 cgaggcacgc gcggtgctgg accggcattt gcggcggctc aggctgcagg aggcgaggag
     4681 acggctgtcg gcactccagg caagccttat cgatgcgccg ggcgcgcttg gccagacgct
     4741 gcggggcttt gtccacgacc ggctcggggc cgggggcgaa acccccgagg cgctcggccg
     4801 cgcctggcga acgttgctcg acgagctgcg ccagatccgc gcgcttgggc ccgatttcgc
     4861 gacaatccgc ggcgtggcgc tcgagataga ggaaagcggt gcgcctctct gggcacggca
     4921 gttgtgcgag agggcagtcg atggcgtgga ggacccgctc acgcccggcg actggcgcga
     4981 gcgctggcgc ctgcggcgcc tcgccacctg gctcgatcgg atcgacgcgc atcaccgcat
     5041 ccgcgagctt tcgcgccgtc gcggcgagct cgaagcgcag ctcgcgcggg cgtatgagga
     5101 cgtgatcgag ctgcgcacct ggtgcgcgct ggccgagaaa gcgagcgacc aggtccgctc
     5161 ggcgctcagc gcctatgccc aggcgatgcg caggatcggg cgcggcaccg gtattcgcgc
     5221 ggcgcgctat cggcaggatg cgcgatccgc cgccgatcgc gccaagaacg cgctgccgtg
     5281 ctggatcatg ccgcattacc gcgtctcgga gtcgctgccc gctgagctgg ggctgttcga
     5341 cctggtgatt atcgatgaag cctcgcaatc gacgatcggc gcgctgccgg cactgctgcg
     5401 cgcgcgacaa gtgctgatcg tcggcgacga caagcaagtc agccccgatg ccggctttcg
     5461 cagcgaggat aaattggtcg agctgtcgcg ccgctatctg agcgggcagg tcgaggactt
     5521 ccgcgctgcg ctgcgcgagg acaagtcgct ctacgatctg ggttcggtgg tgttcgcggg
     5581 cggcgcgatc atgctcaagg agcatttccg ctgcgttgcg ccgatcatcg agttctcgaa
     5641 agcccaattc tacgaccaca agcttcagcc gctccgactt ccgtccgcat cggagcgtct
     5701 ggacccgccc ttgatcgaca ttttggtcga ggacgggttt cgatccggcg acgtcaatcg
     5761 gcccgaggtc gcctgcatcc tggacgagat cgcccggatc gcggccgacc cggcgatggc
     5821 ggcgcgggcg atcggcgtca cgacattgct cggccagaaa caggcgatgc tgatccagga
     5881 agcgatcgag cagcagcttg gccccgagct gatgctgcgc cacgacatcc gggtcggcga
     5941 cccctccgcc tttcaggggg acgagcgcga catcatgttc ctctcgctgg tcgcggatcg
     6001 cagcgcgtcg accatctccg gcctcggctt cgagcagcgg ttcaacgtcg ccgcgtcgcg
     6061 tgcgcgcgac cgaatggtgc tggtgcgttc ggtcgagccc gaggagctgc gggcgagcga
     6121 caagttgcgc cgcgcgctga tccagcactt ccgcgcgccc ttcgcggccg attcaaagct
     6181 gaacgaggat cggcgcaaac gctgcgagtc gccgttcgag gaggagatgt tcgatctgct
     6241 cgtcgagcga ggctatcgcg tcgatacgca agtgccggtc gggcataagc ggatcgacct
     6301 ggtcgtcgaa ggcggcgagg accggcggct ggccatcgag tgcgacggcg acgcgtttca
     6361 tggccccgaa cgctggggcg aagacatggc ccggcagcga atgctcgagc gggcaggttg
     6421 gcgcgtgtgg cgctgctttg cctcgcgctt cgtccgcgac cgcgaaggcg tgcttcgcga
     6481 actcgtcgaa acgctggacg cgctggacat cgcgccca
//
LOCUS       DASQVK010000385         4352 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_89486, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000385 DASQVK010000000
VERSION     DASQVK010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4352
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89486"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(69..1595)
                     /locus_tag="VE567_08325"
     CDS             complement(69..1595)
                     /locus_tag="VE567_08325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017667854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HYZ48885.1"
                     /translation="MGSAAEPHRLTGWRLGLAAFSLALANFIVVLDTTIANVSVPHIA
                     GGLAVSPSQGVWTITSYAVADAISVPLTGWLAARFGSVRWFIVSLVGFGIFSLACGMS
                     TSLYMLVFFRVLQGLSGGPLMPLSQTLLMRIFPKDKQTAALGIWAMTTTAAPILGPIL
                     GGLISDNWSWPWIFFINLPVVAICVFSVTQLVTRFETPTVKAPIDVIGLVLLIVFVGA
                     LQIMLDTGRDNDWFHSNWIIGLALVAAVGFAVFLIWETTEDHPIVDVSVFRYRGFIAA
                     VLAVSLGFGAFFAQIVLTPLWLQQVIGYTATNAGFVVAWIGLFAVIASPLAARLTAVI
                     DLRITVTAGILWLFLMTFLRTRWYTDVDYWTLAMPHVLQGVGMPFFFIGLTALALGSV
                     PPERVVAAAGLMSFCRTLAGAIGTAIATTVWDDANANARGQLVPALNGVRETMAKLQA
                     QGLGQEQARAAVDRLVEIQSATLGAIHVYIGAALIFLIAAAAIWVAPKPQGGAMTVGH
                     "
     gene            complement(1595..2749)
                     /locus_tag="VE567_08330"
     CDS             complement(1595..2749)
                     /locus_tag="VE567_08330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HYZ48886.1"
                     /translation="MADRNPEKLNIDEAALAPPPDKRARRVRMLGILALVLVVGAILW
                     AIWFFLTQAGRVSTDNAYVGADTAQVTPLVAAPVAEVRVANTQAVKKGDVLVVLDPAD
                     ARIELAQAEAALGQAEQRYKQSSANVGAAQGRVEARGSEIEQARARLRDADATLKRTR
                     IELDRREALGASGAVSGDELTQARTAYQSAMAARDLAQAGVRSAEATVAAATGELRAS
                     AAMVEGTTVSTAPEVAAARAKLAQARLDLQRTMIRAPIDGVVTNRQVQVGQRVAAGTQ
                     IMTIVPVAAAFVDANFKENQLAKVRPGQPVELESDFYGGDVTFHGRVVGFAGGTGAAF
                     ALIPAQNATGNWIKVVQRLPVRIALDPKELREHPLRVGLSMHAVVDTRGR"
     gene            complement(2749..4197)
                     /locus_tag="VE567_08335"
     CDS             complement(2749..4197)
                     /locus_tag="VE567_08335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019053074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HYZ48887.1"
                     /translation="MVRSMPGIKPILAIAVGSALAACAAVPNLGPKPALASPASLGAQ
                     RSLAGAQGDWPAADWWSNFGDPQLAGLMTEALAGSPDIAAAAARVRAAEALAEQTGAA
                     LLPHAELEAMAGGTKQSYNLGIPRQFVPKGVIDTGRVTGNFGFDLDLWGRNRAALAAA
                     TSEADAARVDAEQARLVLTTAIAAAYADLAQYHAERDVAVEAARVRQATAELTARRVL
                     NGLDTRGDQRQAESRVPAARAEIAALDEAIALTRNRLAALLGAGPDRGLTIARPRLAA
                     GTAALPDTVALDLIGRRPDIVAARLRAEAAASRIKVARADFYPNVNLTAVIGLQSLGL
                     DKLFESGSLYGNAGPALSLPLFEGGRLQGAYRGARARYDEAVAGYNGTLITALREVAD
                     AVASLRALDTRLAEQRQALAAAEEAARIARIRYEGGLANQLTALQADDTMLAFRRAVA
                     DLEARRFTLQVALVRALGGGFRDSGSRLAGLH"
     gene            4166..>4352
                     /locus_tag="VE567_08340"
     CDS             4166..>4352
                     /locus_tag="VE567_08340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011543379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48888.1"
                     /translation="MGLIPGIDLTILRGTDAPCSLPNRLSIEMIPGGTASRKDQSRDA
                     RRDAFVAAARKAFFSNGY"
BASE COUNT          752 a         1505 c         1445 g          650 t
ORIGIN      
        1 gacgaagggg ccgcgcgtgc ggaaacaggc cacctatggt ggggcatggc cgctgtcaag
       61 ttcgcgggct agtggcccac tgtcatggca ccgccctgcg gtttcggagc gacccatata
      121 gcagcggcgg cgatcaagaa gatgagggca gcgccgatat agacatggat tgcacccagc
      181 gtcgcagact ggatctccac caaccggtcg acagcggcgc gcgcctgttc ctggccgagg
      241 ccctgcgcct gcagcttcgc catcgtctcc cgcaccccgt tcaacgccgg tacaagctgt
      301 cctctcgcat tggcattggc gtcgtcccac accgtcgtcg caatcgcggt accgatcgcg
      361 ccggccaacg tgcggcagaa gctcatcagc ccggcggcgg cgacgactct ctcgggcggc
      421 accgagccga gcgccagcgc ggtcaggccg atgaagaaga acggcattcc gactccctgc
      481 aggacgtgcg gcatggcgag agtccaatag tcgacatcgg tgtaccagcg ggtgcgcagg
      541 aaggtcatca ggaacagcca gaggattcca gccgtcaccg tgatcctgag atcgatcacg
      601 gcggtaaggc gcgcggctag gggcgacgcg atcaccgcga acaggccgat ccacgcgacc
      661 acaaagcctg cattggttgc ggtatagccg atcacctgct gcagccagag cggcgtcagc
      721 acgatttgcg cgaagaaggc gccgaacccg agcgacaccg cgagcaccgc ggcgatgaag
      781 ccgcgatagc ggaacacgct cacatccacg atcggatggt cctcggtcgt ctcccagatc
      841 aggaagaccg cgaacccgac cgcggccacg agcgcgaggc cgatgatcca gttcgaatga
      901 aaccagtcat tgtcgcggcc cgtgtcgagc atgatctgga gcgcgcccac gaagacgatc
      961 agcagcacca ggccgatcac gtcgatcggc gccttgaccg tcggcgtttc gaatcttgtg
     1021 accaattgcg tcacgctgaa gacgcagatc gcgacgaccg gcaggttgat gaaaaatatc
     1081 cagggccagg accaattgtc gctgatcagc ccgcccaaaa tggggcccaa gatcggtgcc
     1141 gccgtcgtcg tcatcgccca gatgccgagc gcggcggtct gtttatcctt ggggaagatg
     1201 cgcatcagca aggtctgcga aagcggcatc agcggcccgc cggacaggcc ctgcagcacc
     1261 cggaaaaaga ccagcatata aagcgaggtc gacatgccgc aggcgagcga gaaaatcccg
     1321 aaccccacga gcgacacgat gaaccagcgc acgctgccga aacgcgcggc cagccagccg
     1381 gtcagcggca cgctgatcgc gtcggcgacg gcgtagctgg tgatcgtcca cacgccttgg
     1441 ctgggcgata ccgccagccc accggcgatg tgaggcaccg agacattggc aatcgtcgtg
     1501 tccagcacga cgatgaaatt ggcgagcgcc agcgaaaaag cggcgaggcc cagccgccag
     1561 cccgtcaggc gatgcggttc cgccgcgctc cccatcagcg gccgcgcgta tccacgacag
     1621 catgcatcga cagcccgacg cgcagcggat gctcgcgcag ttccttgggg tcgagcgcga
     1681 tgcggaccgg caggcgctgc accaccttga tccagttgcc cgtcgcgttc tgcgccggga
     1741 tcaatgcgaa ggccgcgccg gtgccgccgg caaagcccac cactcggccg tggaacgtga
     1801 catcgccgcc atagaagtcc gattcgagtt cgaccggctg gcccggccgg accttggcga
     1861 gctggttttc cttgaagttg gcgtcgacaa aggcggctgc gaccggcacg atcgtcatga
     1921 tctgcgtgcc ggcggcgacc cgctgcccta cctgcacctg ccgattggtg accacgccat
     1981 caatcggcgc gcggatcatg gtgcgctgca gatcgagccg cgcctgcgcc agcttcgcgc
     2041 gggccgcggc cacttcgggg gcggtgctga ccgtcgtgcc ctcaaccatc gcggcgctgg
     2101 cgcggagctc gccggtcgcg gcggccacag tcgcttcggc gctgcggacg cctgcctgcg
     2161 ccagatcgcg cgccgccatc gccgattgat aggctgtgcg cgcctgggtc agctcgtcgc
     2221 ccgacaccgc gccgctcgcg cccagcgcct cgcgccggtc gagctcgatc cgcgttcgct
     2281 tgagcgtcgc gtccgcatcg cgcagccgag cgcgggcctg ctcgatttcc gagccgcgcg
     2341 cttcgaccct gccctgtgcg gcgccgacat tggcgctcga ttgcttgtag cgctgctcgg
     2401 cctgtccaag cgccgcttcg gcctgcgcca actcgatccg ggcatcggcc gggtcgagca
     2461 cgaccagcac atcgcccttc ttcacggctt gcgtgttcgc gacccgtacc tcggccacgg
     2521 gcgctgcgac cagcggcgtc acttgcgcgg tatcggcgcc cacataggca ttgtccgtcg
     2581 aaacgcgccc cgcctgggtc aggaagaacc agatcgccca caggatcgcg cccacgacca
     2641 ggacgagcgc gagaatcccc agcatccgca cgcggcgggc gcgcttgtcg gggggcggcg
     2701 cgagcgccgc ctcatcgatg ttcagcttct cagggttacg gtcggccatc aatgcaatcc
     2761 tgccaagcga ctgccactgt cgcgaaatcc gccgccgagc gctcggacca gggcgacttg
     2821 aagcgtaaag cgccgcgcct cgagatcggc aacggcgcgg cgaaaggcga gcatcgtgtc
     2881 gtctgcctgc aaagcggtta actggttcgc gagcccgcct tcatagcgga tgcgggcaat
     2941 ccgcgccgct tcctcggccg cggcgagcgc ctggcgctgc tcggccaggc gcgtatcgag
     3001 cgcgcgcagg ctcgcgaccg catcggccac ttcgcgcagc gctgtgatca aagtgccatt
     3061 atagccggca acggcctcgt catagcgcgc gcgtgcgccg cgataggcgc cttgcaaccg
     3121 gccgccttcg aagagaggca ggctgagcgc cggcccggca ttgccgtaaa gcgagccgct
     3181 ttcgaacaat ttgtcgagcc cgagcgactg gaggccgata acggccgtca ggttgacgtt
     3241 cgggtagaag tcggcgcgcg cgaccttgat ccggcttgcg gccgcctcgg cccgaagccg
     3301 ggcggcgacg atgtccgggc ggcggccgat caggtcgagc gccacggtgt cgggcagtgc
     3361 agcggtcccg gcggcgaggc gcggccgcgc gatcgtaagt ccccgatcgg ggccggcgcc
     3421 gagcaaagcc gcaagtcggt tgcgggtgag cgcgatggct tcgtcgagcg cggcgatttc
     3481 ggcgcgggcg gcggggacgc gcgattcggc ctggcgctgg tcgccgcgcg tatcgagccc
     3541 gttcagcacg cgccgcgcgg ttagctcggc cgtcgcctgg cgcacccgcg ccgcttcgac
     3601 cgcaacgtcg cgctcggcgt gatattgggc gagatcagcg taggcagcgg caatcgcggt
     3661 ggtcagcacc agccgggcct gttcggcatc gacgcgcgcc gcatccgctt ccgaggtcgc
     3721 cgcggctagc gccgcgcgat tgcggcccca caggtccaga tcgaagccga aattgccggt
     3781 gacgcggccg gtatcgatga cgcccttggg cacgaactgc cgcggaatgc cgagattgta
     3841 gctctgcttc gtgccgcccg ccatcgcctc cagctcggca tgcggcagca acgctgcgcc
     3901 ggtctgctcg gccaaggctt ccgccgcgcg cacccgggca gcagcggcgg caatatcggg
     3961 cgagccagcc agcgcctcgg tcatgaggcc ggcaagctgc gggtcgccga aattgctcca
     4021 ccaatccgca gccggccaat cgccttgcgc gcccgccaag ctgcgctggg cgccgagact
     4081 cgcaggcgag gccagcgccg gcttcggtcc aagattcggc actgctgcgc aagccgcgag
     4141 cgcactcccg acggcaatgg ccagaatggg tttgatcccc ggcatcgacc tcaccatact
     4201 gcgcggtacg gacgcgccct gctctttgcc gaataggttg tcaatcgaaa tgataccagg
     4261 cggtacggct tcccgcaaag accagagtcg cgacgcgcgc cgcgacgcct ttgtcgctgc
     4321 cgctcgcaaa gccttctttt caaatggata tg
//
LOCUS       DASQVK010000386         3152 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_278493,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000386 DASQVK010000000
VERSION     DASQVK010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3152
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278493"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..313)
                     /locus_tag="VE567_08345"
     CDS             complement(<1..313)
                     /locus_tag="VE567_08345"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010542773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0009231 - riboflavin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HYZ48889.1"
                     /translation="MVAAELSRLRHGYLSSPEEIIDEARNGRMFILVDDEDRENEGDL
                     VIPAQMATPDAVNFMAKHGRGLICLALSKARVDQLGLDLMSRSNGSRHETAFTVSIEA
                     KE"
     gene            complement(300..911)
                     /locus_tag="VE567_08350"
     CDS             complement(300..911)
                     /locus_tag="VE567_08350"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HYZ48890.1"
                     /translation="MFTGIITDVGTIESVEARGDTRAVIRTAYDTATVDLGASIACSG
                     VCLTVVDKGPGWFAVDVSGETVRRTAPGQWTAGRKLNLERAMKLGDELGGHIVTGHVD
                     GVADVLGICPEGDSKRIGFRVPGELAPFLAPKGSITIDGVSLTVNQVEDQQDGSAHFS
                     VNLIPHTQAVTTLGALEPGQAVNLEIDVLARYLQRMEYYHGRR"
     gene            complement(911..1837)
                     /gene="ribD"
                     /locus_tag="VE567_08355"
     CDS             complement(911..1837)
                     /gene="ribD"
                     /locus_tag="VE567_08355"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA];
                     GO_function: GO:0008835 -
                     diaminohydroxyphosphoribosylaminopyrimidine deaminase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HYZ48891.1"
                     /translation="MGAALALGARGRGRTAPNPNIGCVIVKDGRVVGRGWTQPGGRPH
                     AEAMALAEAGEKSRGATLYVTLEPCAHQSPRGPACADLIAAAGVARVVAAAEDPDPRT
                     AGGGFDRLRAAGIEVATGLREAEALRSYAGFVSRQRQGRPHVTLKLATSLDGRIALPD
                     GSSRWITGEPARTHAHLERSRHEEILVGRGTWDADAPRLDVRLEGLEDRSPHIHVLSS
                     SSEVNSVESIAALPGDYLLVEGGAETAAAFLGADLVDRLLLYRAPILIGAGKSAIGDL
                     GLGDLAAAHGRWQMLDARQLGSDRLEVYERNR"
     gene            complement(1852..2118)
                     /locus_tag="VE567_08360"
     CDS             complement(1852..2118)
                     /locus_tag="VE567_08360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48892.1"
                     /translation="MFAFLAVITTVTLITGFMLDSRDLKVPYKRDIQYVESWPLNRTD
                     AEIIAAQKQDQKTRAAKDAEEKKRQAENRAALKRLDDALSRFGF"
     gene            complement(2242..2898)
                     /locus_tag="VE567_08365"
     CDS             complement(2242..2898)
                     /locus_tag="VE567_08365"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HYZ48893.1"
                     /translation="MTADGFLQQKQRHPLAMTAAVAINLAAVTALMLAKSGAIAVDPG
                     VIHLIPINEPVPPPPHDIPKPHPKSGTPTAPPQPKPILGGESIDKPIFATTDNVSGNI
                     DGPIAPTFPELPIGPQKQVEPVTVGAQPDQRYAGDFQPPYPPQLLRTGVEGKVVVKIL
                     IGADGRVKQVAILSADDPLFADAAERQALRKWRFKPATRDGAPIESWKQMTVRFEIRP
                     "
     gene            3015..>3152
                     /locus_tag="VE567_08370"
     CDS             3015..>3152
                     /locus_tag="VE567_08370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016744471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HYZ48894.1"
                     /translation="MISHPEQQYLDAMRRVWTEGSERIDRTGVGTRSLFGVTMRFDLS
                     DG"
BASE COUNT          507 a         1039 c         1058 g          548 t
ORIGIN      
        1 cttccttcgc ctcgatcgag acggtgaacg ccgtctcgtg ccggctgccg ttggagcggc
       61 tcatcaggtc gaggccgagc tggtcgaccc gcgccttgct gagcgccagg cagatcaggc
      121 cgcggccatg ctttgccatg aaattgacgg cgtccggcgt cgccatctgc gccggaatga
      181 caaggtcgcc ctcattttcc cgatcctcgt catcgaccag gatgaacatg cggccgttgc
      241 gcgcctcgtc gatgatctct tcgggcgacg acagatagcc gtggcggagc cggctgagtt
      301 cagcggcgac catgataata ctccatccgt tggagatagc gcgcgagcac atcgatttcg
      361 aggttcacgg cctggccggg ttcgagcgcc cccaaggtgg tgaccgcctg ggtgtgcggg
      421 atcaggttta ccgagaaatg ggcggagccg tcctgctggt cctcgacctg gttgacggtg
      481 agggacacgc cgtcgatcgt gatcgaaccc ttgggtgcga ggaacggcgc gagttcgccc
      541 gggacgcgga agccgatccg cttcgaatcg ccttcggggc aaatcccgag cacgtccgcg
      601 acgccatcga catggccggt gacgatatgg ccgccgagtt cgtcgcccag cttcatggcg
      661 cgttccagat tgagcttccg gcctgcggtc cactgcccgg gtgcagtgcg gcggaccgtc
      721 tcgcccgaga cgtcgacagc gaaccagccg gggcccttgt ccaccacggt caggcacacg
      781 cccgaacagg cgatcgaggc gccgagatcg accgtagccg tgtcataggc agtgcggatc
      841 acggcgcgcg tgtcgccgcg cgcttcgacg gactcgatcg tcccgacgtc ggtgatgatc
      901 ccggtaaaca tcagcgattg cgctcgtaga cttcgagccg gtcgctgcca agctggcggg
      961 cgtccagcat ttgccatcgg ccgtgcgcgg cggcgagatc gccaagaccc aggtcgccga
     1021 tcgcgctctt ccccgctccg atcaggatcg gggcgcggta gaggagcagc cggtcgacca
     1081 gatcggcgcc caggaacgcc gccgccgtct ccgccccgcc ttcgacgagg agatagtcgc
     1141 ccggaagggc ggcgatactc tccacggaat tcacctcgga cgaagaggaa aggacatgaa
     1201 tatggggcga tcgatcctcc agaccctcca gccgcacgtc gagcctgggc gcgtccgcgt
     1261 cccaggtgcc gcggccgacg aggatctcct cgtggcggct gcgttcgaga tgagcgtgcg
     1321 tgcgcgccgg ctcgccggtg atccagcggc tgctgccgtc cggcagcgca atgcggccgt
     1381 cgagcgaagt ggccagcttc agcgtcacat gcggccggcc ctggcgctgg cgtgagacga
     1441 aacccgcata ggagcgcagc gcctcggcct cgcgcaagcc cgtcgccacc tcgattccgg
     1501 cggcgcgaag gcggtcgaag ccaccgccgg ccgtgcgcgg gtcgggatcc tcggcggctg
     1561 ccaccacgcg cgccacgccc gccgccgcga tcaggtcggc acaggccggc ccgcgcgggc
     1621 tttgatgcgc gcagggctca agcgtcacgt aaagagttgc gccgcgcgac ttctcgccgg
     1681 cctcggcgag cgccatagcc tcggcgtgcg gacggccgcc gggctgcgtc cagccgcgtc
     1741 cgaccacgcg cccatccttc acgatcacac agccgatatt cgggttgggc gccgtccggc
     1801 cacggccgcg cgcgccgagc gccagcgccg cccccatcca gcgcgggtcg gtcaaaatcc
     1861 gaaccggctg agcgcgtcgt ccagccgctt cagcgcggcg cgattctcgg cctggcgctt
     1921 tttctcctcg gcatccttgg cggcgcgcgt tttttgatcc tgcttctgcg cggcgatgat
     1981 ctcggcatcg gtgcggttca gcggccagct ttcgacatat tggatgtcgc gcttgtaggg
     2041 gactttcagg tctctcgaat cgagcatgaa gccggtgatc agcgtcaccg tcgtgatcac
     2101 cgccaggaac gcgaacacca gctcatgctt cgggcgcgag tgaaggaaga gacgcaagtc
     2161 tctcaagccc accagcgggt tgtaacggcg gaaacgggac attgggacga agataggacc
     2221 ccaatgtccc gcttgccagc cttacggcct aatctcgaac cgcaccgtca tctgcttcca
     2281 gctttcaatc ggcgccccgt cgcgggtggc cggcttgaaa cgccatttgc gcagcgcctg
     2341 gcgctcggcg gcgtcagcga agagcgggtc gtcggccgag aggatcgcga cctgcttcac
     2401 gcgcccgtcc gcgccgatca gaatcttcac cacgaccttg ccctcgacgc ctgtgcgcag
     2461 aagctgaggc ggataaggcg gctggaagtc gccggcatag cgctggtcag gctgcgcgcc
     2521 gacggtcacc ggctcgactt gcttttgtgg cccgatgggg agctcgggga aagtcggcgc
     2581 tataggaccg tcgatattgc ccgagacatt gtcggtcgta gcgaatatcg gcttgtcgat
     2641 gctctcgccg cccaggatcg gcttaggttg gggcggcgcg gtgggagttc ccgatttggg
     2701 gtgcggcttc ggaatgtcgt gcggcggggg cggcaccggc tcgttgatcg ggatgaggtg
     2761 gatcacgccg ggatcgaccg cgatcgcgcc gctctttgcg agcatcaggg cggtcactgc
     2821 ggcgagattg atcgcgaccg ccgctgtcat cgcaagtgga tggcgctgtt tctgctgaag
     2881 gaatccgtct gccgtcatcg catcgtctcc tatctcccgg cctctgcggg ccgtattacc
     2941 atgatgttac aacatcacat tgcaaacaag agggaagttg cgccgaggtc cgtgctcgcg
     3001 caaagaccga tgcgatgatc tcccatcccg agcagcaata tctggacgcc atgcgccgcg
     3061 tctggacgga aggtagtgag cgcatcgatc gcaccggcgt cggcacccgg tcgctgttcg
     3121 gcgtgacgat gcggttcgac ctgtcggacg gc
//
LOCUS       DASQVK010000387         2991 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_183108,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000387 DASQVK010000000
VERSION     DASQVK010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2991)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2991)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2991
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183108"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(75..797)
                     /locus_tag="VE567_08375"
     CDS             complement(75..797)
                     /locus_tag="VE567_08375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein"
                     /protein_id="HYZ48895.1"
                     /translation="MAGTTLTDRALLRLSGEDVRGFLQGLVTQDVTGTLPVWAGLLTP
                     QGKALFDFILWADGDDVLIDCEADAADALARRLAIYRLRRAIMIAPEERLAVHWSAEE
                     GGARDPRLPELGFRWLAPADETTDGWRAQRLRLGVAEGRAELGDGTTLWLECNAAELN
                     GVSFTKGCYVGQENTARMNWRQKVNRRLFVIETDMDPGDKAQAWYPELGLAVARLRVE
                     DVSTPLDWGRPIVPAWLREAVA"
     gene            821..1870
                     /gene="pyrC"
                     /locus_tag="VE567_08380"
     CDS             821..1870
                     /gene="pyrC"
                     /locus_tag="VE567_08380"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004151 - dihydroorotase activity
                     [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HYZ48896.1"
                     /translation="MNSQATMRLAIRRPDDWHVHLRDGEMLKAVAPFTARQFARAIVM
                     PNLTPPITTVAAAKAYRARILAAAPADFTPLMTLYLTDDADPAELARGHEAGVFTAAK
                     LYPAHATTNSAYGVTDVRNIYPALEAMQRIGMPLLVHGEVTDPEVDIFDREAVFIDRV
                     LSGLAGDFPALKIVFEHITTAEAAAFVADSGPLIGATITPQHLIINRNAIFAGGIRPH
                     AYCLPVAKREHHRLAIRRAAVSGSPKFFLGTDSAPHAVGRKETACGCAGIFNAPFALE
                     SYATVFEEEGALDRFEAFASENGPRFYGLPLNQGTVMLERAEVQVPEHIAADGTSVVP
                     FHAGEMLRWKMIDAF"
     gene            complement(1918..2664)
                     /locus_tag="VE567_08385"
     CDS             complement(1918..2664)
                     /locus_tag="VE567_08385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006966429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1134 domain-containing protein"
                     /protein_id="HYZ48897.1"
                     /translation="MWRVRASAALAIMALGWPAMAQVQTVDPNTAIDADLGAPPAAAP
                     AAHPSSGDTVYYGDTAPPAPPPPQPMGQAAPAAQPAPAAPAASGETYKKDDVIGAAEG
                     VFGKGAKGLAQIIEKIMKDQGEPTAYISGREAGGAFVVGLRYGSGTLNHKIEGKKPVY
                     WTGPSVGFDAGANGGSTFVLVYNLHDAHDLFQRFPAGEGNAYFVGGLTASYMRSGDIV
                     LIPIRMGVGLRLGANVGYMKFTEKSRLLPF"
     gene            2828..2920
                     /locus_tag="VE567_08390"
     tRNA            2828..2920
                     /locus_tag="VE567_08390"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2862..2864,aa:Ser,seq:gct)
BASE COUNT          513 a         1041 c          918 g          519 t
ORIGIN      
        1 cagccgctcg accggcacgc gctcgggcag ggatgcgcca agcagaagca gcggtatgaa
       61 cgcaagcagc accctcatgc tacggcctcc cgcaaccagg cgggaacgat cggacgcccc
      121 caatccagcg gcgtgctcac gtcctccact cgcagccgcg cgactgcgag gccgagctcg
      181 ggataccagg cctgggcctt gtcacccgga tccatgtcgg tctcgatcac gaacaaccgc
      241 ctgttcactt tctgccgcca gttcatgcgt gccgtattct cctggccgac atagcagccc
      301 ttcgtgaaac tcaccccgtt aagctcggcg gcattgcatt cgagccagag cgtcgtgcca
      361 tcgcccagct ccgcgcggcc ctcggccacg cccagccgca accgctgcgc ccgccagccg
      421 tcggtcgttt cgtctgccgg agcaagccag cgaaagccga gttcgggcaa gcgcgggtct
      481 ctcgcgccgc cttcttccgc cgaccaatgc accgccagcc gctcttctgg ggcaatcatg
      541 atcgcgcgac gcagccggta aattgcgagc cgccgtgcca gcgcgtccgc cgcatcggcc
      601 tcgcagtcga tcagcacgtc gtctccatcc gcccacaaga tgaagtcgaa cagcgccttg
      661 ccctggggtg tcagcaagcc ggcccagacc ggaagggtgc cggtcacgtc ctgcgtcacc
      721 aagccttgca gaaagccacg gacatcctcg cccgagaggc gaagtagcgc gcgatcggta
      781 agggtagtcc cggccatgcg ctccagttaa ggagctcggc atgaattccc aagccacaat
      841 gcgcctcgcg atccgccgcc ccgacgattg gcacgtccat ttgcgggacg gcgagatgct
      901 gaaggccgtc gcgcctttca ctgcgcgtca gtttgcccgc gcgatcgtga tgcccaatct
      961 gacgccgccg atcaccactg tcgctgccgc caaagcctat cgcgcccgca tcctcgccgc
     1021 cgcgcctgcc gacttcacgc cgctgatgac gctgtatcta accgacgatg ccgatccggc
     1081 cgaacttgcc cggggccatg aagcgggggt gttcaccgcc gccaagcttt atcccgcgca
     1141 cgcaacgacc aattccgctt atggcgtgac ggacgtccgc aatatctatc cggcgttgga
     1201 ggcgatgcag cggatcggca tgccgttgct ggtccatggc gaagtcaccg acccggaggt
     1261 cgatatcttc gaccgcgagg cagtgttcat cgaccgtgtg ctttcgggcc tggcaggcga
     1321 ttttccggcg ctgaaaatcg tgttcgagca catcaccacg gccgaagcgg cggcctttgt
     1381 cgccgacagc gggccgctga tcggcgcgac catcacgccc cagcatctga tcatcaaccg
     1441 caatgcgatc ttcgccggcg gcatccggcc ccatgcctat tgcctgccgg tcgccaagcg
     1501 cgaacatcac cgcctggcca ttcgccgcgc ggcagtgtcg ggctccccca aattcttcct
     1561 gggcaccgac agcgcgcccc acgcggtcgg gcgcaaggaa acagcctgtg gctgcgccgg
     1621 catcttcaac gctcccttcg cgctcgaaag ctatgcgacg gtgttcgagg aggaaggcgc
     1681 gctggaccgc ttcgaagcct tcgcgtctga aaacgggccg cgcttctacg gtctgccgct
     1741 caatcaaggc acagtcatgc tggagcgtgc cgaggtgcag gtgccggagc atatcgctgc
     1801 agacggcacc tcggtcgtgc cattccatgc gggcgagatg ctgcgttgga agatgatcga
     1861 cgcgttctag cccgtttgcc gatcgagtct gggtttagat ctggctgcgc caggtcgtca
     1921 gaacggcagc aagcgcgact tctcggtgaa cttcatatag ccgacattgg cgcccagccg
     1981 caggccaacg cccatgcgga tcgggatcag cacgatgtcg cccgagcgca tatagctggc
     2041 ggtcaggccg cccacgaaat aggcattgcc ctcgccggcc gggaaacgct ggaacaagtc
     2101 gtgcgcgtca tgaaggttgt aaaccagcac gaacgtgctg ccgccattgg cgcctgcgtc
     2161 gaagcccacg gagggcccgg tccaatagac tggcttcttg ccctcgattt tgtggttgag
     2221 cgtgccggag ccatagcgca ggccgaccac gaacgcgccg cccgcctcgc gcccggagat
     2281 ataggcggtc ggctcgccct ggtccttcat gatcttttcg atgatttggg ccaggccttt
     2341 ggcgcccttg ccaaacacgc cttcggccgc gccgatcacg tcgtccttct tgtaggtctc
     2401 gcctgaagcg gcgggagcag ccggagccgg ctgggcagcg ggcgcggcct gacccattgg
     2461 ctgcggcgga ggcggggccg gaggcgccgt gtcgccgtaa tagactgtgt cgccggacga
     2521 ggggtgagca gccggcgctg ccgcaggtgg cgcgcccagg tccgcgtcga tcgccgtgtt
     2581 gggatcgaca gtctgcacct gcgccatcgc cggccaaccc agcgccatga tcgccagcgc
     2641 cgcacttgcg cgaacccgcc acatcgtcct gctccccgca cgtctatccg attggaagat
     2701 tagctggatt ccgccttgcc ccgcaatgaa cgcgcgtcag gacgaatcga aaatgcgcca
     2761 gagcgaatcg ctcgcggacc gttgatcgcg gccaaggccc ctgctatcgc cgcgcttcgc
     2821 cgcatccgga gacgtgggtg agtggctgaa accagcggtt tgctaaaccg ccgtacgggg
     2881 attactcgta ccgagggttc gaatccctcc gtctccgcca gcgcttcccg cgctttcgac
     2941 gacttggcag cgcgccgcga cgctttgcgt atcatggccg tcgatagtgc c
//
LOCUS       DASQVK010000388         3462 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_152021,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000388 DASQVK010000000
VERSION     DASQVK010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3462
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152021"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..512
                     /locus_tag="VE567_08395"
     CDS             <1..512
                     /locus_tag="VE567_08395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="cell envelope biogenesis protein TolA"
                     /protein_id="HYZ48898.1"
                     /translation="AHPQQPAPAPAEPAPAPVPTPNPKPTKPPVRKPDVARGARLGPD
                     FLKGITEAASVTRTAEASAPNIGPREQASLAAELKRQLKPFWKPPSGADTDKLRVIIV
                     ANLRQDGTILGEPQVIGPTGVTPSNRAQAGLFVERAVTAVKRAAPYNFPKDYYAAWKT
                     IRPQLYEGL"
     gene            513..1868
                     /gene="tolB"
                     /locus_tag="VE567_08400"
     CDS             513..1868
                     /gene="tolB"
                     /locus_tag="VE567_08400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009820521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system beta propeller repeat protein
                     TolB"
                     /protein_id="HYZ48899.1"
                     /translation="MKYLGLSLLLVSTMALAQTAPAPPPAPVPAPSSGLSVDVTAEAG
                     DDLKIAVPVLATDAVRQTVAGGTDALGRQIAEVIASDLRGSGLFRPLGPSGIPTPSFA
                     EANAPNFGLWPQTGAEALVSGFVRAGGDGQLTVGCYLYDVNLKSELKRTGFVVAPRDW
                     RRAAHKCADMIYSRLSGESPFFDSRIAYIAETGPKDRRVKRLAIMDSDGANHRFLTNG
                     QNLVLTPRFSPDYKSIVYVSYQQRRPHVFVYNIGTGTQRLVLDTPNQVIAPRFSPDGK
                     WLLFSMSQGGNTDIYKMPATGGTPTRLTNSVGIDLGGSFSPDGQRIVFESDRSGKQQL
                     YVMNADGSNQQRISFGGGAYATPEWSPRGDLIAFTRIGSFNIGVMSPSGGGERILTNG
                     WQDESPTWSPNGRVIQFFRTTPGGGGKSSVWQVDLTGRNLRKIPTPVDGSDPTWGPLL
                     P"
     gene            1889..2395
                     /gene="pal"
                     /locus_tag="VE567_08405"
     CDS             1889..2395
                     /gene="pal"
                     /locus_tag="VE567_08405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007689541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HYZ48900.1"
                     /translation="MKLGRTLMVATALIAVAGCAKKPPKELPPAPQPAPAAEAPPAQP
                     AGPTPGSQAHFLANITSDRVHFDTDKSDVRPEDQAVLQSQAAYLKQYPQVRVSIEGHC
                     DERGTREYNLALGERRANAAKNYLASLGIDPARMSTISYGKERPEATGSDEASWAQNR
                     RAVTVVVQ"
     gene            complement(2403..3281)
                     /locus_tag="VE567_08410"
     CDS             complement(2403..3281)
                     /locus_tag="VE567_08410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010214699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S1/P1 nuclease"
                     /protein_id="HYZ48901.1"
                     /translation="METSNGRRLGLAFIWGAALAAACVAAPAQAYWDYAHRTIAAIAW
                     NQVTPQARARIRRLIAHAPELATPKCPIHSIQDASVWADCVKPGERYSYAYSWHFQNV
                     DICKPFDIKSNCAFGNCVSAQITRNAKLLADRSLPMRERLQALAFLVHLVGDLHQPLH
                     AGDRADLGGNKVVAHYGEVGGRINLHMIWDGYLAERAITSPPPGPLGILGMIAPGDRK
                     AAASGTVEDWSRENWEVARDKVYAPVSGGDPCAADRPKRATVDEVRIEAAIPVLRLQM
                     ARGGLRLARLLDEALG"
     gene            complement(3268..>3462)
                     /locus_tag="VE567_08415"
     CDS             complement(3268..>3462)
                     /locus_tag="VE567_08415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014076878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoaspartyl peptidase/L-asparaginase"
                     /protein_id="HYZ48902.1"
                     /translation="RIGGEAILSAARAVIKDVGGLGGTGGVIVVGPDGSGGWAFNSSG
                     MYRGRISSGQEPVVALYGDE"
BASE COUNT          611 a         1236 c         1082 g          533 t
ORIGIN      
        1 ccgcgcaccc gcaacagccg gcgcctgctc ccgccgaacc ggcccctgct ccggtcccga
       61 cgccgaaccc gaagccgacc aagccgcccg ttcgcaagcc cgacgtggca cggggtgcgc
      121 ggctcggccc cgatttcctg aaaggcatta ccgaagccgc gagcgtcacc cgcacggccg
      181 aagcctcggc gcccaacatc ggcccgcgcg aacaggcctc gcttgccgcc gaactcaagc
      241 gccagctcaa gccgttctgg aagccgccga gcggagcgga caccgacaag ctgcgcgtca
      301 tcatcgtcgc caatctgcgg caagacggga cgatcctggg cgagccgcaa gtgatcgggc
      361 cgaccggcgt gacgcccagc aaccgcgccc aggcgggtct gttcgtcgag cgcgcggtca
      421 cggcggtgaa gcgcgccgcg ccctataatt tcccgaaaga ctattacgcc gcctggaaaa
      481 ccatccggcc gcagctctac gagggtctct gaatgaaata tcttggcctt tcgcttctgc
      541 tcgtttccac catggcgctc gcccagacgg cgccggctcc gccacccgcc cccgttccgg
      601 ccccatcttc gggtctcagc gtggacgtga ccgcggaagc gggcgacgat ctcaagatcg
      661 ccgttcccgt gcttgcgacg gacgcggtgc ggcagacggt tgccggcggc accgacgcgc
      721 tcggccgcca gatcgcggag gtgatcgcgt ccgacctgcg cggcagcggc ctgtttcgcc
      781 cgctcggtcc ctcgggcatc ccgacgccga gttttgccga ggccaacgct cccaacttcg
      841 gactctggcc gcagaccggg gcggaagcct tggtcagcgg cttcgtccgg gccggcggtg
      901 acggccagct cacggtcggc tgctatctct atgacgtgaa tctcaaatcg gagctgaagc
      961 gcaccggctt cgtcgtcgcc ccgcgcgact ggcggcgggc ggcgcacaaa tgcgccgaca
     1021 tgatctattc gcggctttcc ggcgaaagcc cgttcttcga cagccgtatc gcctatattg
     1081 ccgagacggg ccccaaggat cgccgcgtca agcgccttgc gatcatggat tcggacggcg
     1141 ccaaccaccg cttcctgacc aacggccaga acctcgtcct caccccgcgc ttttcgcccg
     1201 actacaagtc gatcgtctat gtgagttacc agcagcggcg cccgcatgtg ttcgtttaca
     1261 acatcggcac cggcacccag cggctagtgc tcgacacgcc caaccaggtg atcgcgccgc
     1321 gcttctcgcc cgacggcaaa tggctgcttt tctcgatgag ccaggggggc aataccgaca
     1381 tctacaagat gccggcgacg ggcggcacgc ccacgcgcct caccaactcg gtcggcatcg
     1441 atctcggcgg cagcttttcg cccgacgggc agcggatcgt gttcgaaagc gaccgttcgg
     1501 gcaagcagca gctttatgtg atgaacgccg atgggtcgaa ccagcagcgg atcagctttg
     1561 gcgggggcgc ctatgcgacg cccgaatgga gcccgcgcgg cgacctcatc gccttcacca
     1621 gaatcggcag cttcaacatc ggcgtaatgt cgccttcggg cggcggcgag cgcatcctga
     1681 ccaatggctg gcaggacgaa agcccgacct ggtcacctaa tggccgcgtc atccagttct
     1741 tccgcaccac gcccggcggc ggcggcaagt ccagcgtctg gcaagtcgac ttgaccggac
     1801 gcaatctgcg caagattccc acccctgtcg atggatccga tccgacctgg ggaccgttgc
     1861 tgccctgaaa cgataaagga gatcgatgat gaaacttggc cgcacattga tggtcgcgac
     1921 cgccctgatc gccgtcgccg gctgcgcgaa aaagccgccc aaggaactgc cgccggcccc
     1981 gcaaccagct ccggccgccg aggcgccgcc cgcgcagcct gccggtccga cgccgggcag
     2041 ccaggcgcat ttcctcgcca acatcacgtc cgatcgcgtg catttcgaca ccgacaagtc
     2101 cgatgtccgt cccgaggatc aggcggtcct gcagagccag gcggcctatc tgaagcaata
     2161 tccgcaggtc cgcgtctcca tagaaggcca ttgcgacgag cgcggcaccc gcgaatacaa
     2221 cctcgcgctc ggcgaacggc gcgcgaacgc ggccaagaac tacctcgcat cgctgggcat
     2281 cgacccggcg cgcatgtcca cgatcagcta cggcaaggag cggccggaag cgacgggctc
     2341 cgacgaggcg agctgggccc aaaaccgccg cgccgtgacg gtggtggtgc agtaagagag
     2401 cgtcagccga gcgcctcgtc cagcaaccgg gcgaggcgca ggcccccacg cgccatctga
     2461 aggcgaagca ccggaatcgc ggcctcgatc cggacctcgt cgacagtcgc ccgcttgggc
     2521 cggtccgccg cgcagggatc gccgcccgaa acgggcgcat agaccttgtc gcgcgcgact
     2581 tcccagtttt cgcgcgacca gtcctcgacc gttcccgatg cggccgcctt ccggtcgcct
     2641 ggcgcgatca tgccgaggat acccaaggga ccgggcggcg gcgaggtgat cgcacgttcc
     2701 gccagatagc cgtcccagat catgtgcagg ttgatgcggc cgccgacctc gccatagtgc
     2761 gccacgacct tgttgccgcc cagatctgca cggtctccgg cgtggagcgg ctgatgcaga
     2821 tcgccgacga gatgaaccag gaaggcgagc gcctgtagcc gctcgcgcat cggcaggctg
     2881 cggtcggcga gcagcttggc gttgcgcgtg atctgtgccg acacgcaatt gccgaaggcg
     2941 cagttcgatt tgatatcgaa cggcttgcat atgtcgacgt tctggaagtg ccaggaatag
     3001 gcatagctgt agcgttcacc gggcttgacg caatcggccc agacgctcgc atcctggatg
     3061 ctatggatcg ggcatttcgg agtcgccagc tctggcgcgt gcgcgatcag gcggcggatc
     3121 cgggcccgcg cctggggcgt cacctgattc caggcgattg cagcgatggt tcgatgggcg
     3181 taatcccaat aggcctgggc cggcgctgca acgcacgccg ccgcgagggc tgccccccag
     3241 atgaaagcca gcccgagccg gcgcccgtta ctcgtctcca taaagcgcga cgaccggctc
     3301 ctgcccactg gaaatgcgcc cgcgatacat gccggacgag ttgaaggccc agccgccact
     3361 gccatccggc ccgaccacga tcacgccgcc cgtgcccccg agcccgccca catccttgat
     3421 gaccgcgcgt gccgctgaca aaatagcttc gccgccgatc cg
//
LOCUS       DASQVK010000389         2766 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_374335,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000389 DASQVK010000000
VERSION     DASQVK010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2766
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_374335"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(125..214)
                     /locus_tag="VE567_08420"
     tRNA            complement(125..214)
                     /locus_tag="VE567_08420"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(178..180),aa:Ser,seq:tga)
     gene            complement(275..400)
                     /locus_tag="VE567_08425"
     CDS             complement(275..400)
                     /locus_tag="VE567_08425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016744094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2474 family protein"
                     /protein_id="HYZ48903.1"
                     /translation="MPVITDPPGPWWKRLAWFVAIWAASVAALGAAAYAIRLWIA"
     gene            complement(384..1391)
                     /gene="cydB"
                     /locus_tag="VE567_08430"
     CDS             complement(384..1391)
                     /gene="cydB"
                     /locus_tag="VE567_08430"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016682 - oxidoreductase activity, acting
                     on diphenols and related substances as donors, oxygen as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HYZ48904.1"
                     /translation="MTPDPVLTVLFAFVIAFAIAMYVVMDGFDLGIGILFPSFRVGSE
                     RDAAMNSIAPVWDGNETWLVLGGGGLMAAFPLAYAIILPALYAQLIAMLLGLIFRGVA
                     FEFRWRDPGHRAFWDWAFFAGSLTATLAQGIALGALLQGITVKGRAYGGGWWEWLSPF
                     SVLTGASLVAGYALLGACWLMWKTEGQIHDDARRWARPLAIATLLAIVVVSAATPFLE
                     GRYWQRWFAWPSVLATAQVPLLVAITAFLLFRSLAKGQERAPFLYTLILFGLSLMGLG
                     ISIFPEVVPGSVTIWQAAAPAKSQVFMIIGIAVLVPIILAYTGWAYWVFRGKVANAGY
                     H"
     gene            complement(1388..>2766)
                     /locus_tag="VE567_08435"
     CDS             complement(1388..>2766)
                     /locus_tag="VE567_08435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0070069 - cytochrome complex [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019646 - aerobic electron transport chain
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HYZ48905.1"
                     /translation="SFHFIFPSFTIGLASYLAVLEGLWLKTGESVYFDLFKYWVKAFA
                     IVFAMGVVSGIVLSYQFGTNWSVFSDKAGPIIGPLMAYEVLTAFFLEAGFLGVMLFGM
                     SRVGRGLHFTATCAVAVGTLISAFWILSANSWMQTPVGYVTGANGQLLPGPSWWAIIF
                     NPSFPYRLAHTVTASYLTTALAVGAVGARHLLRERNNAAARKMFSMAMWMLTLVAPIQ
                     ILIGDQHGLNTLAHQPQKVMAMEGHFQSHPRGAPLTLVGLPDQAAKRVDYAVEIPKAS
                     SLILKHDLNAPLAGLDTIPDDREPPVAIIFWSFRIMVGLGFLMAALGLASLVARLRGK
                     LYDWPLIHRWALLMGPTGFVAVIAGWVTTEVGRQPYTVYGILRTADSVAPLAAPAVAS
                     SLVAFVLVYFTVFGIGAWYILRLMGHAPQPHEPEIAEAPIRTAGITPASQMGRDADPR
                     PDLAEGAT"
BASE COUNT          588 a          917 c          864 g          397 t
ORIGIN      
        1 gatcctggca ttccgaatac aggaggcgac tcaagctcga gcggtggggc ccttttgagc
       61 ggtcttggtt aatgaaccag gtccttccaa ccggttccga agtcaaccga tcgatcttgg
      121 agaatggcgg agagggtggg attcgaaccc acggtgggcg taaacccacg gcggttttca
      181 agaccgctgc cttaaaccac tcggccacct ctccgcgtcg tagccgctta ccgcctgacc
      241 cgcacgacgc acaagccggg tctgacggcg cgagtcaggc gatccacagc cttatcgcat
      301 aagcagctgc gcccagcgcg gctacgcttg cagcccagat cgcgacgaac caggcgagcc
      361 gcttccacca ggggccgggc gggtcagtga taaccggcat tcgccacctt gccgcggaac
      421 acccaataag cccagccggt ataggcgagg atgatcggca ccagcactgc aatgccgatg
      481 atcatgaaga cctggctctt tgcgggggcc gccgcctgcc agattgtgac gctgcccggc
      541 acgacttcgg ggaagatcga gatgccgagc cccatcagcg acaggccgaa cagtatcagc
      601 gtgtagagga atggcgcgcg ctcctgcccc ttggcgaggc tgcggaacag caggaaggcc
      661 gtgatcgcca ccagcagcgg cacttgcgcg gtcgcgagca cgcttggcca agcgaaccag
      721 cgttgccaat agcgaccttc gaggaacggc gtagccgcgc tcaccaccac gatcgcgagc
      781 agagtggcga ttgcgagcgg ccgcgcccac cggcgcgcat cgtcatgaat ctgcccttcg
      841 gtcttccaca tcagccagca cgctcccagc agggcatagc cggcaacaag gctggctccg
      901 gtcagcacgc tgaacgggct cagccactcc caccagccgc cgccataggc gcggcccttg
      961 accgtgatgc cctggagcag cgccccgagc gcgatcccct gggccagcgt cgccgtcagc
     1021 gagccagcga aaaaggccca atcccaaaag gcgcgatggc ccgggtcgcg ccagcggaac
     1081 tcgaacgcga cgcccctgaa gatcagcccc agcagcatcg cgatcagctg cgcgtaaagc
     1141 gcaggcagga tgatcgcata ggcgaggggg aaagccgcca tcaggccgcc gccgcccagc
     1201 accagccaag tctcgttgcc gtcccaaacc ggcgcgatcg aattcatcgc cgcatcgcgc
     1261 tccgacccta cccggaagct tggaaagaga atgccgatcc ccaggtcgaa tccgtccatt
     1321 accacataca tcgcgatcgc gaatgcgatc acgaacgcga agaggacggt gaggacgggg
     1381 tcgggagtca tgtcgcgccc tcggccaggt ccggacgcgg gtctgcgtcc cggcccatct
     1441 gcgacgccgg cgtgatccct gcagtacgga tcggcgcctc ggcgatctcc ggctcatgag
     1501 gctgcggggc atggcccatc aggcgcagaa tgtaccaggc gccaattccg aacacggtga
     1561 aatagaccag cacgaaagcg accagcgaag aggcgaccgc gggcgcggcg agcggcgcca
     1621 ctgaatccgc cgtgcgcagg atgccataga ccgtgtaggg ctggcggccg acttcggtcg
     1681 tcacccagcc agcgatcacc gccacaaagc ccgtcggccc catcagcagc gcccagcggt
     1741 ggatcagcgg ccaatcatag agcttgccgc gcagtcgcgc gaccagactg gcaagaccga
     1801 gcgcggccat caggaagccg agccccacca tgatccggaa cgaccagaag atgatcgcga
     1861 ccggcggctc ccgatcgtcg ggaatcgtgt ccagcccggc gagcggcgca ttgagatcgt
     1921 gcttcaggat cagcgacgaa gcctttggaa tctcgacggc atagtcgaca cgcttcgccg
     1981 cctgatccgg cagcccgacc agggtcagcg gcgcgccgcg cggatggctt tggaaatggc
     2041 cttccatcgc catcaccttc tgcggctggt gcgcgagcgt gttaaggcca tgctggtcgc
     2101 cgatgaggat ctggatcggc gccacgagcg tcagcatcca catcgccatc gagaacatct
     2161 tgcgtgcggc ggcattgttt cgctcccgca gcaaatgccg cgcgccgact gcgccgaccg
     2221 ccagcgcggt cgtcagatag gaagccgtga cggtatgggc gaggcgatag ggaaagctcg
     2281 ggttgaaaat aatggcccac cagctcggac ccggcagcaa ttgcccgttc gctcctgtca
     2341 catagccgac cggggtctgc atccagctgt tcgccgacag gatccagaag gccgaaatca
     2401 gggtcccgac cgcgacggcg catgtggccg tgaagtgcag cccgcggccg acccggctca
     2461 tgccgaacag catcacgccc agaaagcccg cctccaggaa gaaggcggtc agcacttcat
     2521 aagccatcag cggcccgatg atcgggccgg ccttatcgga gaagaccgac cagttggtgc
     2581 cgaactgata ggaaaggacg atgccggaca ccacgcccat cgcgaaaacg atggcgaatg
     2641 ctttcaccca atatttgaac aggtcgaaat agacgctctc accagtcttc aaccacagac
     2701 cttcgagcac tgccaagtag ctggcgagcc cgatggtgaa ggacgggaag atgaagtgga
     2761 acgaga
//
LOCUS       DASQVK010000390         5220 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_57977, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000390 DASQVK010000000
VERSION     DASQVK010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5220
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57977"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..410
                     /locus_tag="VE567_08440"
     CDS             <1..410
                     /locus_tag="VE567_08440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HYZ48906.1"
                     /translation="EALGRQLAMHVAAAYPLALSGEDIDPAIIEREAAIAQEKAADKI
                     AGKPPEVVEKIVKGPVDKFRKENALLTQAFVIDGKTPVQDVVSAEAKAAGGSIAIKDF
                     VRFQLGEGIEKQQSDFAAEVAATAGIKKDEPVA"
     gene            544..1266
                     /gene="pyrH"
                     /locus_tag="VE567_08445"
     CDS             544..1266
                     /gene="pyrH"
                     /locus_tag="VE567_08445"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HYZ48907.1"
                     /translation="MTRPRFKRILLKLSGEVLMGDGHAIDPAVTARVALEIADVKAQG
                     YEICVVVGGGNIFRGLAAAAQGFERATADYMGMLATVMNALAVQNALEQIGVDTRVQS
                     AIPMASVCEPYIRRRAQRHLEKGRIVIFAAGVGSPFFTTDSGAALRAAEMKCDALFKG
                     TSVDGVYDADPKKVASAKRFNTISYDRVLADNLKVMDASAVALCRDNNIPIVVFNIRE
                     QGNLARVLSGEGIATIVQKEGD"
     gene            1269..1826
                     /gene="frr"
                     /locus_tag="VE567_08450"
     CDS             1269..1826
                     /gene="frr"
                     /locus_tag="VE567_08450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011240980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HYZ48908.1"
                     /translation="MPAFNKSDLERRMHGAVEALKHDLGGLRTGRASTSLLDPIHVEV
                     YGANMPLSQVATVSAPEPRMLSVQVWDKSNVGPVDKAIRSAGLGLNPIVDGQTLRLPI
                     PDLTEERRKELAKLASQYGEKARVAVRNVRRDGMDALKQDEKKHELSEDERKRHETEV
                     QKLTDSTIAEIDTTFHAKEKEILGK"
     gene            1901..2569
                     /locus_tag="VE567_08455"
     CDS             1901..2569
                     /locus_tag="VE567_08455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HYZ48909.1"
                     /translation="MDGNGRWAKARHLPRVAGHRRGVETVRRIVRRAGEIGIDVLTLY
                     AFSSENWRRPAEEVSDLMGLLRRFIRADLNEIAGAGVRIRVIGDYRAFQDDVVKLIDD
                     AIAQTAANDRMTLVIALNYGSQYELARAARTLAERAQAGEIGTAAITPEAIERELYTT
                     DLPPVDLLIRTSGERRLSNFLLWQAAYAELLFVDTLWPDFDENELDAALADFARRERR
                     FGGL"
     gene            2566..3351
                     /locus_tag="VE567_08460"
     CDS             2566..3351
                     /locus_tag="VE567_08460"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010216848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HYZ48910.1"
                     /translation="MIGPTQRGSDLAIRTVSGIALIALALAALWGGGIWLWGLASVGA
                     MLMLAEWGALVQSDPKHRRLALFAGCVPLAIMSPLASGVSFFSLGLILGTTLFVTIVT
                     RKPRLGFGIAYVAFPALALLFLRGQGNGLLLALWTLATVWATDIGAYFAGRSIGGPKL
                     APTISPNKTWAGLMGGVLAALVLGIVMWRFAGLRPQLVFASPILAVIAQIGDLYESWL
                     KRQAGVKDSGTILPGHGGVLDRLDGLVPVAPAAAALILLDKIL"
     gene            3348..4508
                     /locus_tag="VE567_08465"
     CDS             3348..4508
                     /locus_tag="VE567_08465"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010127727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070402 - NADPH binding [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HYZ48911.1"
                     /translation="MKRTVSILGATGSVGTSTLDLIERAPEQFEVLALTAMSDVRKLA
                     EIARRTHAKLAVIADERRLPELAAALEGSGTRVAGGEAAVLEAAAAGAHWTMAAIVGC
                     AGLEPVMAAVEQGGTVVLANKEPLVSAGELILAAAARHGATVLPADSEHNAIFQCFDS
                     LRPERVRRIILTASGGPFRDLSRAEMGAVTVEQAVAHPVWSMGAKISVDSATLMNKGL
                     ELIEAARLFPVAPERIEIIIHRQSIVHSLVEYVDGSVLAQLGSPDMRTPIAYTLAWPD
                     RMETPVAPLDLARVGRLDFAEPDPDRFPALRLAREALKAGGARPAVLNAANETAVAAF
                     LDRRIAFLDIAAIVERTMERYDPAAPSGIEDVVAIDREARHEAAEAMKVFVD"
     gene            4526..>5220
                     /locus_tag="VE567_08470"
     CDS             4526..>5220
                     /locus_tag="VE567_08470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017671560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HYZ48912.1"
                     /translation="MLTIIAFLAVIGPLVFVHELGHYLVARLFGVKAEAFSIGFGREI
                     FGFTDRRGTRWKFGWLPLGGYVRFAGDMNPSSQPDPDWLMLPPEERNRTFQAKPVWQR
                     ALIVLAGPLTNFLLAMMILAAFAMTMGVNRTPPVAGAIQPGSAAATAGFQPGDRVLSV
                     NGRTVGDFSDFAEYVIARPNEALSVEVERAGARRTISVTPETHYRVDRFGNKYPFGRL
                     GISSPRPVVERVGL"
BASE COUNT          867 a         1640 c         1797 g          916 t
ORIGIN      
        1 tggaagcgct gggccggcag ctcgcgatgc acgtggcggc ggcttatccg ctcgcgctca
       61 gcggcgaaga catcgacccg gcgatcatcg agcgcgaagc cgcgatcgcc caggaaaagg
      121 cggccgacaa gatcgccggc aagccgcccg aagtggtcga gaagatcgtc aaggggccgg
      181 tcgacaagtt ccgcaaggaa aatgcgctgc tgacacaggc tttcgtcatc gacggcaaga
      241 cgccggtcca ggacgtggtc tcggcggagg ccaaggcggc cggcggttcg atcgcgatca
      301 aggacttcgt ccgctttcaa ctgggcgagg gcatcgagaa gcagcagagc gacttcgccg
      361 ccgaagtcgc cgccaccgcc ggcatcaaga aggacgagcc ggtcgcttga cgtagtagcc
      421 ggggtgggtg gcgagcgcag cgcgccgaag cccacccctg ctccccctcc gccgggaggg
      481 aatggccttg gcagcgccag tagcgctgac taagacgacc cccattgccc tgatcggaac
      541 gccatgactc gccctcgctt caaacgcatt ctcctgaagc tgtccggcga agtgttgatg
      601 ggggacgggc atgcgatcga cccggccgtc actgcccgcg ttgcccttga gatcgcggat
      661 gtgaaagccc agggctatga aatttgcgtc gtggtgggcg gcggcaacat cttccgcggg
      721 ctcgcagcgg ccgcgcaagg gtttgagcgc gcaacagccg actatatggg catgctggcg
      781 acggtgatga acgcgctggc ggtccaaaat gcgctcgagc agatcggtgt ggacacccgc
      841 gtccagtcgg cgatcccgat ggcttcggtg tgcgagccat atatccgcag gcgagcgcag
      901 cggcatctgg agaaaggccg catcgtcatc ttcgcggccg gcgtaggcag cccgttcttc
      961 acgaccgact cgggcgcggc attgcgcgcc gccgagatga agtgcgacgc gctgttcaag
     1021 ggcacgtcgg tcgacggcgt ctatgacgcg gatccgaaaa aggttgcgtc ggccaagcgt
     1081 ttcaacacaa tcagttatga tcgggtactc gcggacaatc tcaaagttat ggatgcgtcc
     1141 gctgtggcgc tgtgccgcga caacaatatc ccgatcgtgg tgttcaacat ccgcgagcag
     1201 ggcaatctcg cccgcgtgct gagcggggag ggcatcgcca cgatcgtgca gaaggaaggg
     1261 gattgatcat gccagccttt aacaagagcg acctggagcg ccgcatgcac ggcgcggtcg
     1321 aggccctgaa gcatgacctt gggggcctgc gcaccggccg cgcctcgacc agcctgctcg
     1381 atccgatcca tgtcgaggtt tacggcgcga acatgccgct cagccaggtg gcgaccgtct
     1441 cggcgcccga gccgcggatg ctgagcgtcc aggtgtggga caagtccaat gtcgggccgg
     1501 tcgacaaggc gattcgctcg gccgggctcg gcctcaaccc gattgtcgac ggccagacgc
     1561 tacgcctgcc gatccccgac ctgaccgaag agcgccgcaa ggagctcgcc aagctcgctt
     1621 cgcaatatgg ggaaaaggcg cgcgtcgcgg tccgcaacgt tcgccgcgac ggcatggacg
     1681 cgctgaagca ggacgaaaaa aagcacgaac tgagcgaaga cgagcgcaag cggcacgaaa
     1741 ccgaggtcca gaagttgacc gattcgacga tcgccgagat cgacaccacc ttccacgcca
     1801 aagagaaaga aatcctcggc aagtgattcc gctcaaggcc agcgctgacg aggcccctgc
     1861 cggtggcgct ggtgcgaccc cgcgccacgt tgcgatcatc atggacggca atggccgctg
     1921 ggcgaaagcg cggcatttgc cgcgggtcgc gggacaccgg cgcggcgtgg agacagtgcg
     1981 gcgcatcgtc cgcagggccg gcgagatcgg catcgacgtg ctgacgctct acgccttctc
     2041 gtcggaaaat tggcggcgcc cggcggagga agtttccgac ctgatggggc tgttgaggcg
     2101 cttcatccgc gccgatctca acgagattgc cggggccggc gtgcgtatcc gcgtgatcgg
     2161 agattaccgc gcattccagg acgatgtagt caagctgatc gatgatgcga tcgcgcagac
     2221 cgccgcgaat gatcggatga cgctcgtgat cgcgctgaac tacggttcgc agtacgagct
     2281 ggcgcgggcg gcgcgcacgc tcgccgagcg cgcgcaggcg ggggagattg gtactgccgc
     2341 catcacgccg gaagcgatcg agcgtgagct ttacacgacc gatctgccgc cggtggacct
     2401 gctgatccgc acgtcgggcg aacggcggct ttccaatttc ctgctttggc aggcggccta
     2461 tgccgagttg ctgttcgtgg acacgctctg gcccgatttc gacgaaaacg agctggacgc
     2521 ggcgctggcc gatttcgcgc ggagggagcg ccggttcggc ggactatgat cggcccgact
     2581 cagcggggtt ccgatctggc gatccgcacc gtgagcggta tcgcgctgat tgccctggcc
     2641 ctggctgcct tgtggggcgg aggcatctgg ctctggggcc ttgcctcggt tggggcgatg
     2701 ttgatgctcg ccgaatgggg cgcgctggtt caatccgatc cgaagcatcg gcgcctggcg
     2761 ctgttcgccg ggtgcgtgcc gctcgccatt atgtcgccgc tcgcctcagg cgttagtttt
     2821 ttttcgctcg ggctgatcct cgggacgacc ttgttcgtca cgatcgtgac ccggaagccg
     2881 cggctgggct ttggaatcgc ctatgtcgca tttccagccc tggcgctgct gttcctgcgc
     2941 ggccagggca atggcttgct gctcgcgctc tggacgctcg cgacagtctg ggcgaccgat
     3001 atcggcgcgt attttgccgg ccgtagtatc ggtgggccga aacttgcgcc gacgatcagc
     3061 cccaacaaga cctgggcggg attgatgggg ggggtgctcg cggcgcttgt gctcggcata
     3121 gtaatgtggc ggtttgcggg tctgaggccc cagctcgtct tcgccagtcc cattcttgca
     3181 gtgatcgcgc agatcggcga tctctatgag agttggctga agcgccaggc cggcgtgaag
     3241 gacagcggca cgatcctgcc cggacatggc ggcgtgttgg accggctgga cgggctggtt
     3301 ccggtcgcac ctgccgcggc ggcgctgatc ctgttggaca aaatcctatg aagcgcaccg
     3361 tcagcattct cggcgcgacc ggctcggtcg gcacctcgac gctcgacctg atcgagcgtg
     3421 cacccgagca attcgaggtg ctggcgctca ccgcgatgtc ggatgtgcgc aagctcgccg
     3481 aaatcgcgcg ccggacgcac gccaagctcg ccgtgatcgc cgatgagcgg cgcctgcctg
     3541 agcttgcggc ggcgctcgag ggaagcggca cgcgcgtggc cggtggcgag gcggcggttc
     3601 tcgaagccgc ggccgccggc gcccactgga cgatggccgc gatcgtcggc tgcgccggcc
     3661 tcgagccggt catggcggcg gtcgagcagg gcggcacggt ggtccttgcc aacaaggagc
     3721 cgctggtttc ggccggcgaa ttgatcctcg ccgcggccgc gcgccacggc gcgactgttc
     3781 tgcccgccga ttcggagcat aatgcgatct tccaatgctt cgattccctg cggcccgagc
     3841 gggtccggcg catcatcctg accgcaagcg gcggcccgtt ccgcgacctg agccgtgccg
     3901 aaatgggcgc ggttaccgtc gaacaggcag tcgcgcatcc ggtctggtct atgggcgcga
     3961 aaatctccgt cgactcggcc actttgatga acaaggggct ggagctgatc gaggctgcgc
     4021 ggctcttccc ggtcgcgccg gagcggatcg agatcatcat tcatcgccag tctatcgtgc
     4081 attcgctcgt cgaatatgtc gacggctcgg tgctcgccca actcggctcg ccggacatgc
     4141 ggacgccgat cgcctatacg ctggcatggc ccgaccggat ggagacgcca gtggcgccgc
     4201 tcgatctggc gcgggtcggc aggctggatt tcgccgagcc cgaccccgac cgcttccccg
     4261 cgctgcggct ggcccgcgaa gccctgaagg ctggcggtgc gcggccggcg gtgctgaatg
     4321 cggccaatga aacggccgtt gccgcatttc tggaccggcg catcgccttc ctggacatcg
     4381 ccgcgattgt cgaacgcacg atggagcgtt atgaccctgc ggcgcccagc gggatcgagg
     4441 acgtggttgc gatcgaccgc gaggccaggc acgaagccgc cgaggcgatg aaggtgttcg
     4501 tcgattgaat cacgctcctg gtcttttgct gaccattatc gctttcctgg ccgtgatcgg
     4561 tccgctcgtt ttcgttcacg agcttggtca ctatctcgtc gccaggctgt tcggcgtgaa
     4621 ggcggaggcc ttttcgatcg gcttcgggcg ggagatcttc ggattcaccg accggcgtgg
     4681 cacgcgctgg aaattcggct ggctgccgct gggcggctat gtgcgcttcg ccggcgacat
     4741 gaatccatcg agccagcccg accctgattg gctgatgctg ccgcccgaag agcgcaaccg
     4801 gaccttccag gccaagccgg tgtggcagcg cgcgctgatc gtcctcgcgg gaccgctgac
     4861 caatttcctt ctggcgatga tgatcctggc tgctttcgcg atgacgatgg gcgtcaatcg
     4921 cacgccgcct gtcgccggcg cgatccagcc gggcagcgcc gccgccacgg ccggattcca
     4981 gcccggcgac cgggtattgt cagtgaacgg ccgcacggtc ggcgatttca gcgattttgc
     5041 cgagtatgtg atcgcacgcc cgaatgaggc gctcagtgtc gaggtcgagc gcgcgggtgc
     5101 gcggcggacg atttcggtga caccggagac gcattaccgg gtcgaccggt tcggcaacaa
     5161 atatccgttc gggcgcctcg gcatcagttc gcccaggccg gtggtcgagc gggttgggct
//
LOCUS       DASQVK010000391         3756 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_246817,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000391 DASQVK010000000
VERSION     DASQVK010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3756)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3756)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3756
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246817"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            244..1167
                     /locus_tag="VE567_08475"
     CDS             244..1167
                     /locus_tag="VE567_08475"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003919 - FMN adenylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HYZ48913.1"
                     /translation="MERLDGGSAVPAPFRGGVVALGNFDGFHLGHQAVVGRAIARARA
                     EGRPALVATFDPHPVRFFQPDAPPFRLTSLDQRERLFSAAGADAMIVFHFDAALAGLS
                     AEQFVVERLAGLFHAGGVVTGEDFTFGKGRSGNAAVLAELAARHGIFTEAVAPVSLEG
                     APVSSSRIRDALQAGDCATAARLLTRPFTIEGKVEHGDKVGRTLGFPTANVALDRYLR
                     PRYGIYAVRGRLPDGRVLDGAANLGIRPSFDPPKELLEPHFFGFSGHLYDQTIEVEFH
                     AFLRAKHRFESLEALKEQIEADCAEAQRLLA"
     gene            complement(1164..2183)
                     /locus_tag="VE567_08480"
     CDS             complement(1164..2183)
                     /locus_tag="VE567_08480"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017669452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HYZ48914.1"
                     /translation="MKIALVTDAWTPQVNGVVRTLQSVRAELERMGHRLLVISPDLYG
                     SLPCPTYPEIRLALATPYSLGQRIADFGAEAVHLATEGPLCLSARRWCLRQARPFTTA
                     YHTQFPDYVSKRTGLPAEWFWRYIRWFHAPAEAVLVSTPSIRRTLEAHGIPHVKPWGR
                     GVDLATFGPEAPPPALFADLPRPIQLYVGRVAIEKNLEAFLSSEHPGSKVVVGDGPAR
                     GELEARFPQAHFLGAMSGRALAGAFAGADVFVFPSKTDTFGLVMIEALACGTPVAAYP
                     VSGPVDVLTAEVGAMREDLSDAIAAALTRDRAVCAAYGRSFSWEASARQFLDALAPIQ
                     LSEAA"
     gene            complement(2180..3052)
                     /locus_tag="VE567_08485"
     CDS             complement(2180..3052)
                     /locus_tag="VE567_08485"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020818944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HYZ48915.1"
                     /translation="MNAITRIPIDADLFHESEPVHPEASVTERRRFRTIWISDIHLGT
                     RGCNAQMLIDFLDHTDSETMYLVGDIIDGWRMKRRFYWPASHNDVVWRVLKRAKRGTR
                     IVYIPGNHDEMFRQFTGLNFGGVEIRRKAIHETADGRKLLVLHGDEFDTIMLAHRWLA
                     FVGDAAYGLMMRLNTAVNLVRQRMGLPYWSLSKVAKHKVKNAVEFISRFEEVVAHEAG
                     ARGVDGVVCGHIHTAEIRAIGGVEYYNDGDWVEGCTALVEHFDGRMEVLHWADEIEAR
                     KAAEQAAQDLALAA"
     gene            complement(3122..3742)
                     /locus_tag="VE567_08490"
     CDS             complement(3122..3742)
                     /locus_tag="VE567_08490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HYZ48916.1"
                     /translation="MDGQLILHEDARSGNCYKIRLTAAHLDVPLIRRNYDIMRGETRT
                     PEFLTAVNANGRIPVLQIGDRFLPESNAACFWLADGSHLVPADRFARADMLRWLFWEQ
                     YNHEPNVATLRFWSVFVGEPNLSEAQRALLPAKQAAGEAALGLMDEHLEKHDWLAGNA
                     FSLADIALYAYTHVADEGGFDLAAYPQLMRWMNRIASLPGHIVIQS"
BASE COUNT          647 a         1213 c         1240 g          656 t
ORIGIN      
        1 cgaaaatcga agcaacaagc aaaatggcgc caaccagggc gctgcgaccc aatttcatta
       61 gtaacttgat ccccgctctc gctggtagcc atgtaggaaa ggcggggcgc tcgcgtcacc
      121 tgcggtgcgg tgactcgaac cgtcgatcgg acgaagcgcg ggaacctttc ggttggtcgt
      181 tcatgcgcgt ccactcaccg ggccggcttg gaagcccggg ggcgaatctc tatagccggg
      241 gccatggagc ggctcgacgg cggctcggcg gttccggccc cttttcgcgg cggagtcgtc
      301 gcgctgggga atttcgatgg atttcatctt gggcatcagg ccgttgtcgg ccgcgcgatc
      361 gcgcgagcgc gggccgaggg gcgcccggca ctggtcgcca ccttcgatcc gcaccccgtg
      421 cgcttcttcc agcccgacgc gccccctttc cggctgacct cgctcgatca gcgcgagcgg
      481 ctgttcagcg cagcgggtgc ggacgcgatg atcgtcttcc acttcgatgc cgcgctcgcc
      541 gggctcagcg ccgaacaatt cgtggtggag cggctggccg gcctgttcca tgccggcggc
      601 gtggtcaccg gcgaggattt cacgttcggc aagggccgca gcggcaatgc ggcggtgctg
      661 gcagagctgg cggcgcgcca cggcattttc accgaagcgg ttgccccggt ttcgctggaa
      721 ggcgcgccgg tctcctcaag ccggatccgc gacgcgctgc aggcgggcga ctgcgccacg
      781 gccgcgcggc tgctgacgcg gcccttcacg atcgagggca aggtggagca tggcgacaag
      841 gtgggccgca cgctcggctt tccgactgcc aatgtcgcgc tcgatcgcta tttgcggccg
      901 cgctatggca tttacgcggt gcgcggccgg ctgccagacg ggcgggtgct ggacggcgcc
      961 gccaatctcg ggatccggcc gagcttcgac ccgcccaaag agctgctcga gccacatttc
     1021 ttcggttttt ccggccatct ttacgaccag acgatcgaag tcgagttcca cgcctttcta
     1081 cgggcgaagc acagattcga gagcctggaa gcgctcaagg agcagatcga ggcggactgc
     1141 gccgaggcgc agcggctgct ggcttaggcg gcttcgctga gctgaatcgg cgccagcgcg
     1201 tccaggaatt gacgcgcgct cgcttcccag ctgaaggagc ggccatatgc cgcgcagaca
     1261 gcgcggtcgc gggtgagcgc tgcggcaatc gcgtcgctca aatcctcgcg catcgcgccg
     1321 acctcggcgg tcagcacgtc gactgggccg ctgaccggat aggcggcgac cggcgtcccg
     1381 caggcgagcg cttcgatcat caccagcccg aacgtgtcgg tcttgctcgg gaacacgaac
     1441 acatctgcgc cggcaaaggc gccggccagc gctcggccag acatcgcgcc caggaaatgc
     1501 gcctgcggaa aacgggcttc gagttcgccg cgcgccggcc cgtcacccac gacaaccttg
     1561 ctgccgggat gctcggacga cagaaaggct tccagatttt tctcgatcgc gacgcgtccg
     1621 acatagagct ggatcggcct cggcaggtcc gcgaacagcg cgggcggcgg cgcctcgggg
     1681 ccgaacgtcg cgaggtccac gccgcgtccc caaggcttca catgcggaat gccgtgcgcc
     1741 tcgagcgtgc gccggatcga gggagtcgac acgagcacgg cctcggcggg cgcgtggaac
     1801 cagcggatat aacgccagaa ccattcggcc ggcagcccgg tccgcttcga aacataatcc
     1861 gggaattgcg tgtgataggc ggtggtgaac gggcgggcct gcctgaggca ccagcgcctg
     1921 gccgacagac acaatggccc ttcggtggcg agatgcacgg cctccgcacc gaagtcggcg
     1981 atgcgttggc ccagcgaata gggcgtggca agcgcgagcc ggatttcggg ataggtcggg
     2041 cagggaagcg acccgtaaag atccggcgaa atcaccagca ggcggtggcc catccgctcg
     2101 agttcggcgc ggaccgattg cagcgtgcgg acgacgccgt tcacctgcgg cgtccatgcg
     2161 tcggtgacca gcgcgatttt cacgccgcga gcgccaggtc ctgcgctgcc tgctcggcgg
     2221 ccttgcgcgc ctcgatttcg tctgcccagt gcagcacttc catgcggccg tcgaaatgct
     2281 cgaccagcgc cgtgcagcct tcgacccagt cgccgtcgtt ataatattcg acgccgccga
     2341 tcgcgcggat ttcggcggta tggatgtggc cgcagacgac cccgtccacg ccccgcgctc
     2401 cggcttcgtg cgcgaccact tcctcgaaac ggctgatgaa ttcgaccgcg ttcttgacct
     2461 tgtgcttggc gaccttggag agcgaccaat agggcaggcc catgcgctgg cgcaccaggt
     2521 tgacggcagt gttgagccgc atcatcagcc cgtaggctgc gtcgcccaca aaggcgagcc
     2581 agcgatgggc gagcatgatc gtgtcgaact cgtcgccgtg caggacgagc agcttgcggc
     2641 cgtccgcagt ctcgtggatt gctttgcggc ggatttcgac gccgccgaaa ttgagcccgg
     2701 tgaactggcg gaacatctcg tcgtgattgc cggggatata gacgatccgc gtaccgcgct
     2761 tggcgcgctt cagcacccgc cacaccacat cgttgtgcga ggcgggccag taaaagcgcc
     2821 gcttcatgcg ccagccgtcg atgatgtcgc cgaccagata catggtttcg ctgtcggtat
     2881 ggtcgagaaa gtcgatcagc atctgcgcgt tgcagccgcg cgtgcccaga tggatgtcgg
     2941 aaatccagat cgtgcgaaag cgtcgccgct ccgtcacgga cgcttcggga tgaaccggct
     3001 ccgattcatg aaataggtcc gcgtcgatcg gaatgcgagt gatggcgttc atgggcgacc
     3061 cctgctgctc tctcgctcgg gccctatgaa cgtaaaatgt gacaatcaga atcgcaagct
     3121 attacgattg gatgacaata tgcccgggaa gcgatgctat gcggttcatc cagcgcatta
     3181 attgtggata ggcggccaaa tcgaacccgc cttcatccgc cacatgagtg taggcataaa
     3241 gcgcgatgtc ggcaaggctg aacgcgttgc cggccagcca gtcgtgcttt tcgagatgct
     3301 cgtccatcag cccgagcgcc gcttcgcctg ccgcctgctt ggctggcagt agcgcgcgct
     3361 gggcctcgct gagattgggc tcgcccacga acacgctcca gaagcggagc gtcgccacat
     3421 tcggctcgtg attatattgc tcccagaaca gccagcggag catgtcggcg cgcgcgaacc
     3481 gatcggccgg gaccaggtgc gatccgtccg ccagccagaa gcaggcggca ttgctctcgg
     3541 gaaggaaccg gtcgccgatc tgaagcaccg gaatgcggcc attggcgttc acggccgtca
     3601 ggaattcggg cgttcgcgtc tcgccgcgca tgatgtcgta gttgcgccgt atcagcggca
     3661 cgtcgagatg cgccgcggtc agccggatct tgtaacaatt ccccgaccgc gcatcctcgt
     3721 gaaggatcaa ctgcccgtcc atatcgtctc cagttc
//
LOCUS       DASQVK010000392         6645 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_90031, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000392 DASQVK010000000
VERSION     DASQVK010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6645
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90031"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1816
                     /locus_tag="VE567_08495"
     CDS             <1..1816
                     /locus_tag="VE567_08495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009820461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="chromosome segregation protein"
                     /protein_id="HYZ48917.1"
                     /translation="ELDAPLTAWAETRGDADPVLSESLAGHVTAPPALARRLAQIAVL
                     DRDDGRPLAPGQQLVTRAGAMRRWDGFAAADSGAAAAERLIRANRLDAIRAALPESRG
                     AVDAAQTAMTEATARLAASKAAAEEARRALAAAETDARNARREEDAAEAAIERFGARK
                     AELDTRRVRASTERDEAAGEAEAASARLAALPDGRATAQRVASLSAESEAARAAVSEK
                     RTLAATLERSIAADRERQAAAQAEVKSWRARAGEAAKRIEEMARRERAAEAELAALAE
                     TPDALREGISRLESGQAELRAEAESLATEERAAEARVREGEATLAQAGEALAQARETR
                     AGAAARAEAADSRRIEMGRVSGERFECPPPVLPERIGFASADVGDPADESARHDRLTL
                     DRERLGPVNLIAEQELRELEAELERSIVERDELIQAVHRLRGSIGSLNREGRARLLAA
                     FEEVDRHFRRLFARLFEGGEAYLQLVDSDDPLEAGLEIMAQPPGKRLGSLTLLSGGEQ
                     ALTAVALIFALFLTNPAPICVLDEVDAPLDDANIERFCDLLDVMVTETDTRYLIVTHN
                     AVSMSRMHRLFGVTMVERGVSRLVSVDLGGAEQLLAAE"
     gene            1873..2286
                     /locus_tag="VE567_08500"
     CDS             1873..2286
                     /locus_tag="VE567_08500"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HYZ48918.1"
                     /translation="MVRAIHHYDRLGVARDAAPEAIAQAYRALSRRHHPDLNGGSADA
                     LRIMQELNEAYAVLRDPAKRRAYDRMLAPAPRRRVRRPRARPAAPARPSLMARVRRRK
                     GALLQATMFAVTLFLAFSPRPVLADSFGITSVARG"
     gene            complement(2393..3160)
                     /locus_tag="VE567_08505"
     CDS             complement(2393..3160)
                     /locus_tag="VE567_08505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HYZ48919.1"
                     /translation="MGFDRGRRGQRGGKDKRDGFGDEGFYEDRGGGSRYGGGGFGGGD
                     FGGGARGGFSGGGGGFGGGGGGFGRGPGGGGMPQQVVGEGKGVVKFFNGQKGFGFIVR
                     DDGGEDVFVHISAVERAGLTGLAEGQPLSFTLVDRGGRVSATDLKIEGEPLPVTGGGA
                     APGGGAGPRGGAGGAGGPQRQLTGEKASGTVKFFNAMKGFGFIQRDDGQPDAFVHISA
                     VERAGMTALNEGDRLEFELEVDRRGKYAAVNLVPIQS"
     gene            3394..4011
                     /locus_tag="VE567_08510"
     CDS             3394..4011
                     /locus_tag="VE567_08510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020818730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease H-like domain-containing protein"
                     /protein_id="HYZ48920.1"
                     /translation="MAVYFHEEDLPEGALGSGPVAVDTETMGLNSHRDRLCLVQISDG
                     RGDEHLVRFGPGSAYDAPNLKSVLADPERLKLYHFARFDLAAIERYLGVTAAPAYCTK
                     TASRLVRTYTDRHGLKDLVKELLGQEISKQQQSSDWGGAVLTEAQKDYAASDVRYLHG
                     LREELDRRLVREGRVELAQACFDFLPHRARLDLAGWPEVDIFAHV"
     gene            4004..4651
                     /gene="lptC"
                     /locus_tag="VE567_08515"
     CDS             4004..4651
                     /gene="lptC"
                     /locus_tag="VE567_08515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HYZ48921.1"
                     /translation="MSEAADRSRDLRQRWAIPGSSHDRVLKWMRAILPMGIGALVAFM
                     SIAPLTIAGEMSFMLDKNKVEVAKERMRVTEALYRGEDSKGQAFALRAGSAVQATSRE
                     PIVRLQDLSASLAAQEGPSLLRADRARYDMDKEAVTVEGPVTYQSADGYRLITRDVNV
                     DLKTRTMASEGAVEGRMPLGTFSGGRISADLPQRIVRLEGGARLHIVQGAARGAR"
     gene            4675..5193
                     /locus_tag="VE567_08520"
     CDS             4675..5193
                     /locus_tag="VE567_08520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014078108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HYZ48922.1"
                     /translation="MFGGAVACAAPLVAQALKGHNTNAPVDVAADRIEVQDRADRAMF
                     VGNVHVTQADLTLNAPRLTVAYANRKGTNGVQIDRLDAAGGVTVRSPSETARGDYAIY
                     DLNRRQITMVGGVVLEQGANTVRGGRLVIDLDSGRAVVDGSAVGGAPGASTSGRGGRV
                     TGRFSVPQRKGG"
     gene            5293..6072
                     /gene="lptB"
                     /locus_tag="VE567_08525"
     CDS             5293..6072
                     /gene="lptB"
                     /locus_tag="VE567_08525"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HYZ48923.1"
                     /translation="MNDVATLTAPIAPGPEPEVGGGLAVVSIAKAYDKRVVLSDVSLA
                     VGRGEVVGLLGPNGAGKTTCFYSIMGLVKPDSGRIMLDGLDITGLPMYRRAILGLGYL
                     PQETSIFRGLTVEKNILAVLELAEPDKAARAERLEQLLAEFGLARLRGAPAMGLSGGE
                     RRRCEIARALAANPSIVLMDEPFAGIDPISIADIRDLVCQLKKRGIGVLITDHNVRET
                     LDIVDRACIIYDGRVLFAGGPEALVADENVRRLYLGEHFEL"
     gene            6075..>6645
                     /locus_tag="VE567_08530"
     CDS             6075..>6645
                     /locus_tag="VE567_08530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016746304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma-54 factor"
                     /protein_id="HYZ48924.1"
                     /translation="MASLAPRLDLRQSQSLVMTPQLQQAIKLLALSNLEIEAFIAEEL
                     DKNPLLETGGEEAVRVDPPEADAGEWDGEDAPEPVTADRLVEHGDGVADAPLDVDFVS
                     ETFHHDGPTDSYGLDGASGLGAAGASSSEDAIDLDGFAGAAGTLQDHLLAQAGACLSG
                     RDAVVAAQIIGQLDDAGYLTGELGEIAERL"
BASE COUNT         1062 a         2255 c         2285 g         1043 t
ORIGIN      
        1 cgagctcgat gcgccgctta cggcctgggc ggagacccga ggcgacgccg atccggtcct
       61 gtccgaaagc ctggcgggcc atgtgactgc gccgccggcg ctcgcccgcc gtctcgccca
      121 gatcgccgtg ctggatcgcg atgacggccg tccgctcgcc cccggccagc agctcgtcac
      181 gcgggccggc gcgatgcggc gctgggacgg attcgcggca gccgattcgg gcgccgcagc
      241 ggcggaacgg ctgattcgcg ccaaccgcct cgacgcgatt cgggcggcgc tacccgaatc
      301 gcgcggagcc gtggacgcgg cgcagacggc gatgaccgag gccaccgccc gtctcgcggc
      361 cagcaaagcc gcagcggaag aggcgcggcg cgcgcttgcc gcggctgaga cggacgcgcg
      421 caacgctcgg cgcgaggaag acgcagccga ggcagcgatc gagcgcttcg gcgcgcgcaa
      481 ggcagagctc gacacgcgcc gtgtccgcgc gagcacggaa cgcgatgaag cggcgggcga
      541 agccgaagcg gcgagtgccc ggcttgccgc gcttcccgac ggccgcgcca cggcccagcg
      601 cgtcgcgtcg ctgtcggccg agagcgaggc cgcgcgcgcg gcggtgtccg agaagcgtac
      661 gcttgccgcc acgctggagc gctcgatcgc cgccgatcgg gagcgccagg cagccgcgca
      721 ggcggaagtg aagagctggc gcgcccgcgc cggcgaggct gcgaagcgca tcgaggaaat
      781 ggctcgccgc gagcgggcgg ccgaagccga gctggccgcg ctggccgaaa cgcccgatgc
      841 cttgcgtgaa ggcatttcga ggctcgaatc gggccaggca gagctgcgcg cggaggccga
      901 gtcgctcgcc accgaggaac gcgccgccga agcgcgggtg cgcgaaggcg aggcgaccct
      961 tgcgcaggcc ggcgaagcgc tggcccaggc gcgcgagact cgcgccggcg cggcggcgcg
     1021 cgcggaggcg gccgattcgc gccggatcga gatgggccgc gtttcgggcg agcggttcga
     1081 atgcccgccc ccggtgctgc ccgagcggat cggcttcgcc tccgccgatg tgggcgaccc
     1141 ggccgacgag tcggcgcggc acgaccggct gacgctcgac cgcgagcgcc ttgggcccgt
     1201 caatctcatt gcggagcagg aactgcgcga gcttgaggcc gagcttgagc gctcgatcgt
     1261 ggagcgcgac gaactgatcc aggccgttca ccggctgcgt ggctcgatcg gcagccttaa
     1321 ccgcgaaggc cgcgcgcggc tgctggcggc gttcgaggaa gtcgaccggc atttccgccg
     1381 cctgttcgcg cgcctgttcg aaggcggcga ggcctatctg cagctcgtcg actcggacga
     1441 tccgctcgag gccggcctcg agatcatggc gcagcccccg ggcaagcggc tcggctcgct
     1501 cactttgcta tcgggcgggg agcaggcgtt gaccgccgtg gcgctgattt tcgcgctgtt
     1561 cctgaccaac cccgccccga tctgcgtcct cgatgaagtc gatgcgccgc ttgacgatgc
     1621 caatatcgag cgcttctgcg acctgcttga cgtcatggtg accgagacgg acactcgcta
     1681 cctgatcgtc acgcacaatg cggtgtcgat gagccggatg caccgcctgt tcggcgtcac
     1741 gatggtcgag cgcggcgtca gccggctggt gtcggtcgat ctgggcggcg cggagcaatt
     1801 gctggcggcg gagtgatcgg aaccaactat taactgcctg ccggatatgc gggcggcgcc
     1861 aggaggtgcc gcttggttcg tgcaatccat cattatgacc gtctgggcgt tgcccgcgat
     1921 gctgcgcccg aagcgatcgc ccaggcgtat cgcgccctca gccggcgcca tcatcccgac
     1981 ctgaatggcg gctccgccga cgcgctgcgc atcatgcagg agctgaacga ggcctatgcg
     2041 gtgcttcgcg atcctgcgaa acgccgggcc tatgatcgca tgcttgcacc agcgccccgg
     2101 cgccgggtcc gccggcctcg cgctcggccg gcagcgccgg cccggccttc gctgatggcg
     2161 cgggtgcgcc ggaggaaggg cgcgcttctg caggcgacga tgtttgcggt cactctgttc
     2221 ctcgccttct cgccgcgccc ggtcctggcc gacagcttcg gcatcacgag cgtcgcccgc
     2281 ggctgatcac gcgatggtcg cgcgccatgc gagcgaccgc tccgcccaat atcaggcggc
     2341 tgccgaccga atcgaagata aaggccccgc cgtctaggcg gggcctttag gattacgact
     2401 ggatcggaac cagattgacc gcggcatatt tgccgcgccg gtccacttcc agctcgaact
     2461 cgagccggtc gccttcgttg agagcggtca tgcccgcccg ctcgacggcg gagatgtgga
     2521 cgaacgcgtc gggctggccg tcatcgcgct gaatgaagcc gaagcccttc atcgcgttga
     2581 agaatttgac cgtgccgctc gccttctcgc ccgtcagctg gcgctgcgga ccgccggcgc
     2641 cgccggcacc gccacgcgga cctgcaccgc cgcccggggc tgcaccgccc ccggttaccg
     2701 gcagcggctc gccttcgatc ttgagatcgg tcgcggaaac gcggccgccc cgatccacaa
     2761 gggtgaagct gagcggctgg ccttcggcga ggccggtcag gccggcgcgc tcgactgcgg
     2821 aaatgtgcac gaacacatcc tcgccgccgt catcgcggac gatgaagcca aagcccttct
     2881 gtccgttgaa gaatttgacg acgcccttgc cttcgccgac gacttgctgg ggcatgccgc
     2941 ccccgccggg gcctcggccg aagccgccgc caccgccgcc gaaaccgccg ccgcctcccg
     3001 agaagccgcc gcgcgcgccg ccgccgaaat caccgccgcc gaaaccgccg ccgccatagc
     3061 ggctgccgcc gccacgatcc tcgtaaaatc cctcgtcgcc gaaaccgtcg cgcttgtcct
     3121 tgccgccgcg ctgaccccgt cgtcctctat cgaaacccat tcttgccttc cggtcgccca
     3181 cctaaaccaa ttcagaaccc gcacgccggg cgcacgccca agtccctcaa gacgcttatt
     3241 ccatagaacg cccttcgaat cctcatagcc gagaatcgcg gttgcggcga atgaaataat
     3301 ccacaggcgc agtgaagacg gtcttcacca ggcgcgaaac aaatgcggaa tgcattgagc
     3361 gtttggccgc cgcagcttat gcgatgctgt catatggctg tttattttca tgaagaagac
     3421 ctgcctgaag gcgcgctcgg cagcgggcct gtcgcagtcg ataccgagac gatggggctc
     3481 aactcgcatc gcgatcgcct ctgcctcgtc cagatttccg acgggcgcgg cgacgagcat
     3541 ctcgtccggt tcgggccggg cagcgcctat gacgcgccca atctcaagtc ggtgctcgcc
     3601 gatcccgagc ggctgaagct ctatcatttt gctcggttcg atctcgccgc tatcgagcga
     3661 tatctgggcg tgaccgccgc tcccgcctat tgcaccaaga ccgcctcgcg gctggtgcgc
     3721 acctataccg accggcacgg cctgaaggat ctggtcaagg aattgctcgg gcaggaaatc
     3781 tcgaagcagc agcagagttc ggactggggc ggcgcggtgc tgaccgaggc gcagaaggac
     3841 tatgccgcgt cggacgtgcg ctatctgcac gggcttcgcg aagagctgga ccggcggctg
     3901 gtgcgggaag gccgggtgga gcttgcccag gcctgtttcg atttcctgcc gcatcgggcc
     3961 cggctcgatc tcgccggctg gccggaggtc gatatcttcg cccatgtctg aggcggccga
     4021 ccgatcgcgc gacttgcggc agcgctgggc cattcccggc agcagccatg accgggtgct
     4081 caaatggatg cgcgcgatcc tgccgatggg aatcggcgcg ctcgtcgctt tcatgtcgat
     4141 cgcgccgctg acgatcgccg gcgaaatgag cttcatgctc gacaagaaca aggtcgaggt
     4201 cgcgaaggag cggatgcggg tgaccgaggc gctttaccgc ggcgaagatt cgaaaggcca
     4261 ggcgttcgcg ctccgcgccg ggtcggcagt gcaggcgacc tcgcgcgagc cgatcgtgcg
     4321 gctgcaggac ctctcggcaa gtctcgcggc gcaagaaggc ccctcgctgc tgcgcgccga
     4381 ccgcgcgcgc tatgacatgg acaaggaagc agtgacggtc gaaggtcccg tcacctatca
     4441 gtcggcagac ggctaccggc tcatcacgcg cgacgtgaat gtcgacctca agacgcgcac
     4501 gatggcaagc gaaggggccg tcgaaggcag gatgccgctc ggaaccttca gcggcggccg
     4561 catctcggcc gatctgccgc aacggatcgt gcggcttgaa ggcggcgccc gcttgcacat
     4621 cgtccaggga gccgccagag gagcgcgatg atccggcggc tcctccttgg cgcgatgttc
     4681 ggcggcgcgg tcgcctgcgc agcgccgctg gtcgcgcaag ccctcaaagg ccataacacc
     4741 aatgcgcccg tcgatgtcgc ggccgatcgg atcgaggtgc aggaccgcgc cgaccgggca
     4801 atgttcgtcg gcaatgtcca tgtgacgcag gccgacctga cgctcaacgc accgcggctg
     4861 accgttgcct atgccaatcg caagggtacg aacggcgtgc agatcgacag gctggacgcc
     4921 gccggcggcg tgacggtgcg ctcgcccagc gaaaccgccc gcggcgatta tgcgatctat
     4981 gatctcaacc gccgccagat cacgatggtg gggggcgtgg tgctggagca aggcgcgaac
     5041 acagtccgcg gcggccggct cgtcatcgat ctcgatagcg ggcgcgcagt ggtcgacggg
     5101 tcggcggtcg gcggggcgcc gggagcctcc acgagcggcc ggggtggccg cgtcacgggg
     5161 cggttcagcg tgccgcagcg caagggcggc tagagccgca agccccacgc ttcgtcgcat
     5221 tcccatgcac aaagcttgcc aaatcgcctt tctttatcga tcaacaaccc taagctgcga
     5281 gccggagccg gcatgaacga cgtcgcaacc ttgaccgcgc ctattgcgcc cgggccggag
     5341 ccggaagtcg gcggcggtct cgccgtcgtc tcgatcgcca aggcctatga caagcgcgtg
     5401 gtgctgtcgg acgtttccct tgcggtcggg cgtggcgaag tggttggcct gctcggcccc
     5461 aatggcgcgg gcaagacgac ctgcttctat tcgatcatgg gactggtgaa gcccgattcg
     5521 ggccgcatca tgctcgatgg cctcgatatc actggcctgc ccatgtatcg ccgcgcgatc
     5581 ctggggctcg gctatctgcc gcaggaaacg tcgatcttcc gcggcctgac ggtcgagaag
     5641 aacatcctcg ccgtgctgga gctggcggag ccggacaagg ctgcgcgggc cgagcggctg
     5701 gaacaattgc tggcggaatt cggcctcgca aggcttcgtg gggcgccggc catggggttg
     5761 tcgggcggcg aacgccgccg ctgcgagatt gcgcgcgcct tggccgccaa tccgtcgatc
     5821 gtgctgatgg acgagccttt tgccggcatc gatccgatct cgatcgccga cattcgcgat
     5881 ctcgtctgcc agctgaagaa gcgcggcatc ggcgtgctga tcaccgatca taatgtccgc
     5941 gagaccctcg acatcgtcga ccgcgcctgc atcatctatg atggccgggt gctcttcgcc
     6001 ggtggccccg aggcgttggt agccgacgag aatgtgcgcc gcctctatct cggcgagcat
     6061 ttcgagttgt agccgtggcc agcctcgccc ctcgattgga cctgcgccag tcgcaatcgc
     6121 tggtgatgac gccgcagctc cagcaggcga tcaagctgct ggcgctgtcc aatctcgaga
     6181 tcgaagcctt tatcgccgag gagctggaca agaatccgct gctcgaaacc ggcggtgagg
     6241 aagccgtgcg cgtcgacccg ccggaggcgg acgcagggga gtgggacggc gaggatgcgc
     6301 ccgaaccggt cacggccgac cggctcgtcg aacatggcga cggcgtcgcc gatgcaccgc
     6361 tcgacgtcga tttcgtctct gaaacctttc atcacgatgg cccgaccgac agctatggcc
     6421 tggacggcgc gtcggggctg ggggctgccg gtgcgagttc cagcgaggac gcgatcgacc
     6481 tggacggctt tgccggcgcc gcaggcacgc tgcaggatca tctgctggcc caggcgggcg
     6541 cttgtctctc gggccgggac gcagtcgtcg ccgcgcagat tatcggccag ctcgacgatg
     6601 ccggctatct gacgggcgaa cttggcgaaa tcgcggagcg cctgg
//
LOCUS       DASQVK010000393         3559 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_278838,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000393 DASQVK010000000
VERSION     DASQVK010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3559
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278838"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..477)
                     /gene="rsmD"
                     /locus_tag="VE567_08535"
     CDS             complement(<1..477)
                     /gene="rsmD"
                     /locus_tag="VE567_08535"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052913 - 16S rRNA
                     (guanine(966)-N(2))-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HYZ48925.1"
                     /translation="MRIIAGRWRGRPLIAPPGDATRPTSDRAREALFSMLASRLGNFE
                     ELRVADIFAGTGALGLEALSRGATRCTFVERDREAVAALKANVERLGATGTDVRAQAA
                     ESFTGGPFDLVFMDPPYGSRLGQKVLPRLTLEAGAWVSLETAFNEEVEIAGFETETT"
     gene            complement(579..1292)
                     /locus_tag="VE567_08540"
                     /pseudo
     CDS             complement(579..1292)
                     /locus_tag="VE567_08540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013040419.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
     gene            1441..1881
                     /locus_tag="VE567_08545"
     CDS             1441..1881
                     /locus_tag="VE567_08545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYZ48926.1"
                     /translation="MLFGRRAKKIQRILIVEDEPLIAFDTEHALADAGYEVVGTVDSV
                     EAALDTLQRKKVNLALIDLGLTDGGNGVEVAAAARREGVHVLFVTGRCPKGAESLGIG
                     CLEKPFNQKDLRAAIEAIETLLTRGSVKKVPPGLTLYTDSASAA"
     gene            complement(1878..3005)
                     /locus_tag="VE567_08550"
     CDS             complement(1878..3005)
                     /locus_tag="VE567_08550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic ring-hydroxylating dioxygenase subunit
                     alpha"
                     /protein_id="HYZ48927.1"
                     /translation="MPTPGQLALAESLAKGAPADGGQITTVPVSVYTDPQRHAHEWQA
                     LFARLPNVIAPSALLPEPEMAVPHDGFGQPLLITRDKAGRAHVFLNVCRHRGTRLVEG
                     GDPVSAPRLICPYHAWSYALDGRLAAIPRPDTFPGLDRSAHSLRELPSVEAGGLIWFS
                     FDDGADFDEARALGGDFDAFNLAGQHLFARHTHDVNANWKLIVDAFSESYHVQRLHAR
                     TIGPMFQDGVTAADRLGPHQRSAVGRAAALAALDRTDWAALRSAITYAYQIFPGGILI
                     VSPDYVNLMVLMPQAVDRTRVEDFMLIPEPPRTEKALAHWQRSWQLLDQGVFGGEDFR
                     AAALGQQGLTTGALKHLTLGTLETGIRAFHDEVELRLAGSS"
     gene            complement(3049..>3559)
                     /locus_tag="VE567_08555"
     CDS             complement(3049..>3559)
                     /locus_tag="VE567_08555"
                     /inference="COORDINATES: protein motif:HMM:NF024685.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SIR2 family protein"
                     /protein_id="HYZ48928.1"
                     /translation="PILYTTNYDNNLEVAYRLARRGYVKIVNARDLAHAEDGCTQIVK
                     YHGDFEEDSSLVLAETDYFDRLNFDSPLDVKFRADALGRTILFVGYSMSDMNIRLLLH
                     KLWRTWAGSGRIKDRPPSFVFAARPDRVRDAVLDQWGITVLSSAERNPEKALVRFLEQ
                     LLQDVKDDA"
BASE COUNT          623 a         1118 c         1208 g          610 t
ORIGIN      
        1 cgtggtttcg gtttcgaaac cagcgatttc aacctcttcg ttgaaggcag tttccaaact
       61 tacccaagcc cccgcctcaa gcgtcaggcg cggcagcacc ttttggccaa ggcgcgagcc
      121 ataaggcggg tccatgaaca ccagatcgaa gggaccgccc gtgaagctct ccgccgcctg
      181 ggcgcggaca tcggtgccgg ttgcgccaag ccgctcgaca ttggccttca gcgcggcaac
      241 cgcctcgcgg tcgcgctcca caaaggtgca gcgggtggcg ccgcgcgaca gcgcctcgag
      301 accgagcgcg ccggtgcccg cgaaaatgtc tgcgacgcgt agctcctcga agttgccgag
      361 ccgggaggcg agcatcgaaa atagtgcctc gcgcgcgcgg tccgaggtcg gacgagtcgc
      421 gtcgccgggc ggagcgatca acgggcgccc gcgccaccgg ccggcaatta ttctcatttt
      481 ttaggtcccc gccgtgccag ggaggggggc tgagcagggc ggggcgccgg ctgggcccgt
      541 atgcgcgctc caccatcgcc gttccgggga ggagctgatt tcagcgtctt cctaaacacg
      601 accagatcgt gctggcgtac ttcctcgacc gcgccagccg ggagatcgcc gagctcgaag
      661 ggaccatatt gcgtgcggat caggcgcgag acgcgcaggc ccagatattc tagcacgcgg
      721 cgcacttcgc gattcttgcc ttccttgagc gtcagttcga tccagacatt ggcgccggtg
      781 cgccgctcca gattggcgtc gatcgagccg tagcggacgc catcaatctc gaccccctcg
      841 atcaattcct ccaattgcgc ttgggtcacc tggccgtaag cccgggcgcg ataggtgcgg
      901 ggcacgcccg ttgccggcaa ctcgagctgg cgcttcaact ctccgtccgt cgtgagcagc
      961 aacaagcctt cggtgttaag gtccagccgg ccaaccggca tcacgcgcgg caggcctttg
     1021 gggaaccggt catagatggt cgggcggcct ttcgggtcgc gctcggtcgt cagcagcccc
     1081 gcgggcttgt gatagcggaa cagccgcgcc ggggacggcg gctggaccgg cttgccgtcg
     1141 accgtaaggc catgcagcga ttcgatcagg gtcgccggcg tcttcaccac cgtgccgttg
     1201 atcgcgatcc gtccttccgc gatcattcgc tcgatctcac gccgcgaggc cacgccggcg
     1261 cgtgcgagca gcttcgctat ccgctgtgct tcccgagact taggcggtgc gactggcagt
     1321 ttaggcctcc caaattcttt tatatcgccc ggcgcgaaat cgttcgccat gcgttttgcg
     1381 ccggtacaag aatgagcgtg aacagggcgc ggtcaatgac ggaggaatga aggggcggca
     1441 atgctgtttg ggagaagggc gaagaagatt cagcgcatcc tcatcgtcga ggacgagccg
     1501 ttgatcgcct tcgataccga acatgcgctc gcggatgccg gttatgaagt ggtggggacg
     1561 gtggacagcg tcgaggcggc actggacacc cttcagcgca agaaggtcaa ccttgcgctg
     1621 atcgatctcg ggctgaccga tggcggcaac ggcgtcgagg ttgcggcggc ggcgcggcgt
     1681 gagggcgtcc acgtgctgtt cgtgaccggc cgctgcccca aaggcgccga gtcgctcggc
     1741 atcggctgcc tggaaaagcc gttcaaccag aaggatctgc gcgccgcgat cgaggcgatc
     1801 gagaccctgc tgacgcgcgg tagcgttaag aaagtcccac ccggactgac gctttacacg
     1861 gatagcgcgt cggcggccta gctggacccc gccagacgca gctccacctc atcgtggaag
     1921 gcgcgaatgc ctgtctcaag cgtgccgagc gtaaggtgtt tgagggcgcc cgtggtcagc
     1981 ccctgctggc cgagagcggc agcacggaaa tcctcgccgc cgaacacgcc ctggtcgagc
     2041 aactgccaac tccgctgcca gtgcgcgagc gctttctcgg tccggggcgg ctctgggata
     2101 agcatgaaat cctcgacccg agtgcggtcg accgcctggg gcatcagcac catcaggttc
     2161 acataatccg ggctgacgat caggatcccg ccggggaaga tttgataggc ataggtgatg
     2221 gccgaccgca gcgccgccca gtcggtgcgg tcgagcgccg caagcgcggc agcgcgtccg
     2281 accgcggagc gctggtgcgg gcccagccgg tcggcggcgg tcactccgtc ctggaacatc
     2341 ggcccgatcg ttcgcgcgtg cagccgctgc acgtgatagc tttcggaaaa agcatcgacg
     2401 atcagcttcc agttcgcgtt cacgtcgtgc gtgtggcggg cgaacagatg ctggccggcg
     2461 agattgaagg cgtcgaaatc gccgccgagc gcgcgcgcct cgtcgaaatc cgcgccgtca
     2521 tcgaagctga accagatcag cccgcccgct tcgacgctcg gcaattccct gaggctgtgg
     2581 gcgctcctgt cgaggccagg aaaagtgtcc gggcgcggga tggcggcaag gcgcccgtcc
     2641 agcgcatagg accaggcgtg gtaggggcaa atgaggcgcg gcgcggagac cggatcgccg
     2701 ccttcgacca gccgcgtccc gcggtggcgg caaacgttca ggaacacatg cgcccggccg
     2761 gccttgtcac gcgtgatgag gagcggctgg ccaaaaccgt cgtgcggcac ggccatctca
     2821 ggctcaggca gcaatgccga tggcgcgatc acgttcggca accgggcgaa gagcgcttgc
     2881 cattcgtggg cgtggcgctg cgggtcggtg taaaccgaga cgggtacggt cgtgatctgg
     2941 ccaccatcgg cgggagcgcc tttggcgagc gactcggcga gcgcgagctg gccgggcgtg
     3001 ggcatgaacg cgttcattac ccgagtgtgc gccgaagtgc tccgcgtctc aagcgtcgtc
     3061 cttgacgtcc tgcaggagct gttcgaggaa gcgcaccagc gccttttccg gattgcgctc
     3121 ggcgctgctg agcacagtga tgccccattg gtcgagcacg gcatcgcgca ctcggtcggg
     3181 ccgggcagcg aagacgaacg acggcggccg gtccttgatc cgccccgaac ccgcccaggt
     3241 gcgccagagc ttgtggagca gcaggcggat gttcatgtcc gacatcgaat agccgacgaa
     3301 caggatcgtg cggccaagcg catcggcgcg gaatttgacg tcgagcggag aatcgaaatt
     3361 gagccggtcg aaatagtctg tctcggccag gaccagcgag ctgtcttctt cgaaatcgcc
     3421 gtggtatttg acgatctggg tgcagccgtc ttcggcatgg gcgagatcgc gagcgttgac
     3481 gatcttcaca tagccgcgcc tggccagtcg ataggcgact tccaggttat tgtcgtaatt
     3541 ggtcgtgtag aggatcggg
//
LOCUS       DASQVK010000394         3976 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_58474, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000394 DASQVK010000000
VERSION     DASQVK010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3976)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3976)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3976
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58474"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1886
                     /locus_tag="VE567_08560"
     CDS             <1..1886
                     /locus_tag="VE567_08560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007682862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HYZ48929.1"
                     /translation="MAPHQPLVETLFQEMRGRIKEADASVPQKDGDWLYWRSFDEGAQ
                     YRKWWRSPVAGGEPRLILDEPALAKGKEYFRLGAMDVSPDERLLAFAVDDNGSERFTI
                     RVKDLETGELLPDVIEGTLGGFLFAGDGRSLIYGLVNEHWRIDVARLHRLGAPVAEDV
                     DLYREADEGFQVGIGLTQSRRFISIGTGDHVTSEVRLLPFDDPTAAPILVAPRKPGRE
                     YDVEEHDGTLFIRTNDTHTNFRLVTAPVERPGEWTERIAPSADFYLTDVTTFADFFVI
                     EGREHGLDRIYIHDYAGGPGQQIEFPEASYSAGLDDNPEYRVTKLRLSYESMVTPGTV
                     LDYDVATGERSVLKVQEIPSGYDASQYATERLEIAVRDGAKVPVSIVYKRGFARPGPL
                     YLYGYGAYGIAIEPGFSTSRLSLLDRGMAFAIAHIRGGDDLGQQWYLDGKLEKRTNTF
                     HDFIDVARGLVGLGWTEAGRIAIAGGSAGGELMGAVVNEAPELWGAVAAHVPFVDVLN
                     TMLDPTLPLTPGEWPEWGNPIEDKAAFELIRSYSPYDNVRPQAYPPLLVTAGLNDPRV
                     TYWEPAKWVAKLRATKTDRNVLLLKTNMGAGHGGKSGRFESLRETAEEFAFLLWQLGL
                     ASA"
     gene            complement(1883..2572)
                     /locus_tag="VE567_08565"
     CDS             complement(1883..2572)
                     /locus_tag="VE567_08565"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYZ48930.1"
                     /translation="MPLALSSVERLAPDWGLFAREFTSALDPRRFMPPMQPVAPSVGL
                     GRPVLVIPGFLASDGSTRPLRLALRQVGFRAHGWKRGRNFGLGANIVDIIDARVRHIA
                     RGSRVSIVGWSLGGLIAREYAKRAPDQIDKVVTLGSPICGDLRQNNNVWRLYEFVAGH
                     PVDAPPVVCALREKPPVETIAIWSRRDGIVAADSACAFDCCDRSIEIGCGHMEMVFAP
                     EAIRAVVKALA"
     gene            complement(2672..2986)
                     /locus_tag="VE567_08570"
     CDS             complement(2672..2986)
                     /locus_tag="VE567_08570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48931.1"
                     /translation="MKAAFILTGAAALAAASVAVAQTSTPDQTTTAAPGQGQATADQA
                     STSGREYGQSVSDQRHKRNKERKEAKSGTTGSGASTVPDQSTLPEAAPSSTPTATPTP
                     QA"
     gene            3231..3449
                     /locus_tag="VE567_08575"
     CDS             3231..3449
                     /locus_tag="VE567_08575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48932.1"
                     /translation="MMIEMRKRERHGARWDEASDEELRRRFADGQLLPEVARAMNRSQ
                     EAVRTRANVLHIPVRSTLRGRPNGSAEA"
     gene            complement(3446..>3976)
                     /locus_tag="VE567_08580"
     CDS             complement(3446..>3976)
                     /locus_tag="VE567_08580"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HYZ48933.1"
                     /translation="RHLVLERQAQTDALTGLANRRGFMDALARATAADEGPVPLALLV
                     IDIDHFKRVNDQHGHATGDAILQRVAAHVARVAGSGAIVSRYGGEEFVVALRGHDLVR
                     AGTIAERIRNSIGVTFDPGSDLPSVTVSIGVAAGLSDDLEALIADADCALYQAKNDGR
                     NRVMLADGALIYSAAA"
BASE COUNT          694 a         1270 c         1339 g          673 t
ORIGIN      
        1 caatggcgcc gcaccagccg ctggtcgaga cgctgttcca ggaaatgcgc ggccgcatca
       61 aggaagccga cgcgtcggtg ccgcaaaagg atggcgactg gctctattgg cggtcgttcg
      121 acgaaggtgc gcaatatcgc aaatggtggc gttcgccggt cgcgggcggc gagccgcggc
      181 tgatcctcga cgagccggcg ctggccaagg gcaaagagta tttccgcctc ggcgccatgg
      241 atgtgagccc ggacgagcgg ctgcttgcct tcgcggtgga cgataatggc tcggagcgct
      301 tcacgatccg cgtgaaggac cttgagacgg gcgagctgct ccctgacgtg atcgagggca
      361 cgctcggcgg tttcctcttc gccggcgacg gccgttcgct gatctacggc cttgtgaacg
      421 agcattggcg gatcgacgtc gccaggctgc accggctcgg cgcgccggtg gcggaggacg
      481 tcgacctcta tcgcgaagcc gatgagggct tccaggtcgg catcggcctc actcagtccc
      541 gccgcttcat ctcgatcggc accggcgatc atgtgaccag cgaagtccgg ctgctgccgt
      601 tcgacgatcc caccgccgcg ccgattctcg tcgccccacg caagccgggt cgcgaatatg
      661 atgtggagga gcatgacggg acgctcttca tccgcaccaa cgacacccac accaatttcc
      721 ggctggtgac cgcgcccgtc gaacggccgg gcgaatggac cgaacggatc gcgccctcgg
      781 ccgatttcta cctgacagat gtcacgacct ttgccgattt cttcgtgatc gagggccgcg
      841 agcacgggct cgatcgcatc tatatccacg attatgccgg cgggccgggc cagcagatcg
      901 aatttcccga ggcgagctat tccgcagggc tggacgacaa tcccgaatat cgggtgacaa
      961 agctccggct ctcctacgag tcgatggtca cgcccggaac cgtcctcgac tacgacgtcg
     1021 cgaccggcga gcgcagcgtg ctgaaggtgc aggagattcc gtcgggctat gacgccagcc
     1081 aatatgcgac cgagcggttg gagatcgcgg tccgcgacgg ggcgaaggtg ccggtctcga
     1141 tcgtctacaa gcgcggtttc gcccggccag gaccgctcta tctctatggc tatggcgcct
     1201 atggcattgc catcgagccg ggcttttcga cctcgcggct cagcctgctc gaccgcggca
     1261 tggcgttcgc gatagcgcat atccgtggcg gcgacgatct cggccagcaa tggtatctgg
     1321 acggcaagct cgagaagcgc accaacacgt tccatgattt catcgatgtc gcgcgcggcc
     1381 tggtcgggct tggctggacc gaggccggac ggatcgcgat cgccggcggc tcggcgggcg
     1441 gcgagctgat gggcgccgtc gtcaacgaag cgccggaatt atggggcgca gtcgctgccc
     1501 atgtgccctt cgtggatgtg ctgaacacga tgctcgaccc gacgctgccg ctcacgcccg
     1561 gtgaatggcc ggaatggggc aatccgatcg aggacaaggc agcgttcgag ctgatccgca
     1621 gctacagtcc ttacgacaat gtccggcctc aggcttatcc gccgctgctg gtgactgcgg
     1681 gcctcaacga tccgcgcgtc acttattggg agccggccaa atgggtggcg aagcttcgcg
     1741 cgaccaagac cgaccgcaat gtgctgctct tgaagacgaa catgggcgcc gggcatggcg
     1801 gtaagtccgg ccgcttcgaa agcctgcgcg aaacggcgga ggaattcgcg ttcctcctgt
     1861 ggcagcttgg cctggccagc gcctaggcca gggccttcac gacggcccgg atcgcttcgg
     1921 gcgcgaatac catttccatg tggccgcagc cgatttcgat cgagcggtcg cagcaatcga
     1981 aggcgcaggc gctgtccgca gcgacgatgc cgtcccgccg cgaccagatc gcgatcgtct
     2041 cgaccggcgg cttttcgcgc aacgcgcaca cgacgggcgg tgcgtcgacc gggtggcctg
     2101 cgacaaattc ataaaggcgc cacacattgt tgttctgccg cagatcgccg cagatcggcg
     2161 atcccagcgt cacgaccttg tcgatctggt caggcgcgcg cttggcgtat tcgcgggcga
     2221 taaggccacc caggctccag ccgacgatcg acacgcggct gccgcgggcg atgtgccgca
     2281 cccgcgcgtc gatgatgtcg acgatgttcg cgccaaggcc gaaattgcgg ccgcgcttcc
     2341 agccatgtgc ccgaaatccg acctggcgca gcgccaggcg cagcggccga gtcgaaccgt
     2401 cagaggccag aaaaccggga atgaccagca cgggccgccc caagccgacg cttggcgcga
     2461 ccggctgcat gggaggcatg aagcggcgcg gatcaagggc ggaagtgaac tcgcgggcga
     2521 agagacccca gtccggggca aggcgttcga cagaagaaag cgcgagcggc atccgaccaa
     2581 cctatgacag ctacgttaca ccagcaacgc attatcggcg gaacggatgc atgccgcccg
     2641 gacgaagaat cgtccgggcg gcgcgataga gtcacgcctg cggagtaggc gtggcagtgg
     2701 gcgtcgagct gggcgccgct tcggggagcg tcgactgatc cggcaccgtg ctggcgccgg
     2761 agcccgtcgt gccagacttg gcttccttcc gttccttgtt tcgcttgtgc cgctgatcag
     2821 agacggattg gccatattcg cgcccgctgg tgctggcttg gtcggcggtg gcctggcctt
     2881 ggccgggtgc ggccgtcgtg gtctgatcgg gagtgctggt ctgggcgacc gcgacactgg
     2941 cggcagccag cgccgcagcg ccggtgagga tgaatgcagc tttcatcgtg aatctccgtt
     3001 gaagtgagtg cccggagatg gccgggcgac aggcgaaccg ctctttcctg caaagggtcc
     3061 cggtggcttg cggaatcggg atcaggcgtg ccggggcaaa gataggcccc cacctctggg
     3121 cggctcgcgc ttcacgccgc gacctcgcaa gatttacgcc agataacaag cacattccga
     3181 acccgttcac cgggcggacg ctagtcacgc gcttcggttt tcaggggaat atgatgatcg
     3241 aaatgcgaaa gcgtgagcgg cacggtgcgc gctgggatga agcctctgac gaggaattgc
     3301 ggcgacgctt tgccgatggg caattgctgc ctgaggttgc gcgggcgatg aaccgctctc
     3361 aggaagccgt gcgcacgcgt gcgaacgtct tgcatattcc tgtccgctcg acgctgcgcg
     3421 ggcgcccgaa tgggagcgcc gaggcttagg ccgcagccga gtagatcagc gcgccgtccg
     3481 ccagcattac ccgattccgt ccgtcgttct tcgcttgata gagcgcgcaa tcggcgtcgg
     3541 cgatcagggc ctcgagatcg tcgctcagac ccgctgcgac cccgatgctg acggtgaccg
     3601 acggcaggtc cgacccggga tcgaacgtca cgccgatgct gttgcggatc cgctccgcaa
     3661 tcgtgccggc gcgcacaaga tcgtggccgc gcagcgccac cacgaattct tcgccgccat
     3721 agcgcgacac aatcgcgccc gagcccgcca cgcgcgcgac atgtgcagcg acgcgctgca
     3781 gaatggcgtc gcccgttgca tggccgtgct ggtcgttgac ccgcttgaaa tgatcgatgt
     3841 cgatgaccag cagcgccagc ggcaccggcc cctcgtcggc agccgttgcg cgagcgaggg
     3901 cgtccatgaa accgcggcgg ttggcgaggc ccgtcagagc gtctgtctgc gcctggcgct
     3961 cgaggaccaa atggcg
//
LOCUS       DASQVK010000395         3681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_26232, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000395 DASQVK010000000
VERSION     DASQVK010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3681
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26232"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..197)
                     /locus_tag="VE567_08585"
     CDS             complement(<1..197)
                     /locus_tag="VE567_08585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48934.1"
                     /translation="MVLKIRRTLSAEQIDDIIAGTVARFELAAEQARRREWQLTAVTQ
                     NFRSYQNKVEAASVDDLFHDGL"
     gene            complement(601..990)
                     /locus_tag="VE567_08590"
     CDS             complement(601..990)
                     /locus_tag="VE567_08590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48935.1"
                     /translation="MAKDIPADEASEQVASCAAAMGIAVGAGAENSIRCSGPEPEIDG
                     GDDDSSPVPGRSFDQDVRIAIHEAGHESRRLNFVGALTGGSESCGCQFSARMSSQGCR
                     IAFTPCARSAGVISDSYDRMARRMYPA"
     gene            complement(1149..1469)
                     /locus_tag="VE567_08595"
     CDS             complement(1149..1469)
                     /locus_tag="VE567_08595"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYZ48936.1"
                     /translation="MKKRAVRSSRTGRPIMALLDLLGRRWTLRIVWELREGALTSRAL
                     RAACDEASPTILQTRLTELREAGLVELVPGDGYRLTGLGQELFETFLPLHRFAERWSK
                     RVAG"
     gene            1577..2116
                     /locus_tag="VE567_08600"
     CDS             1577..2116
                     /locus_tag="VE567_08600"
                     /inference="COORDINATES: protein motif:HMM:NF014664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HYZ48937.1"
                     /translation="MSRIAPLEPPYPSEIQQQFDRIMRGAPPLVLFRVMAAHPRAWEK
                     FRGGSLLDRGPLSLRQREIVIDRTCALNRCEYEWGVHVATFAEAARLTEAQVRATVLE
                     KPDTDCWSAPEQALLAAVDALHARATLDDAEFKALSAHYDNDKILEIILLCGFYRTVS
                     YLANALALPLEAKGARFPR"
     gene            complement(2220..3215)
                     /locus_tag="VE567_08605"
     CDS             complement(2220..3215)
                     /locus_tag="VE567_08605"
                     /inference="COORDINATES: protein motif:HMM:TIGR00393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HYZ48938.1"
                     /translation="MTAYSSGPSSADTAIQSALRTLDAEASGVSAITAALQSDLAAPF
                     AAAAEMIRNAKGRLIVTGLGKSGHIGRKVAATFASTGTPAFFVHAAEASHGDLGMITA
                     DDVILAMSWSGEQPEMKNLITYAARFGIPLIAMTAEKESTLAEAADVSLVLPKTREAC
                     PHNLAPTTSSLMMLALGDAMAIALLEGRGFTSTDFSVLHPGGKLGAMLKYTRDLMHSG
                     DAVPLKPVGTRMSDALVEMSAKGFGCVGIVDAKGHIVGIVTDGDLRRHMRPDLMTALV
                     DDVMTGNPKTIGRDTLAGEALELLNASKITALIVTDARKPIGIVHLHDLLRAGVA"
     gene            3474..>3681
                     /locus_tag="VE567_08610"
     CDS             3474..>3681
                     /locus_tag="VE567_08610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48939.1"
                     /translation="MLLPCLALTVSNLSVRAQIVTPDLFSPVRTSEIATPDSPLRRTA
                     AEAADPLNDPRLQRDKERESRAPSR"
BASE COUNT          674 a         1183 c         1150 g          674 t
ORIGIN      
        1 aggccgtcat gaaagaggtc gtcaactgag gcggcctcaa ccttgttctg gtacgaacga
       61 aagttttggg tcactgcggt cagctgccat tcccggcggc gcgcctgttc ggctgccagc
      121 tcaaaacgtg cgacggtgcc cgcgatgata tcgtcgatct gttcggccga tagcgtccgg
      181 cgaatcttca gaaccacact cagcgcgatg atgaaggcgc gtgcggccgc aaaagatcat
      241 cggccatggc ctcagaagat cttgtccaca tccgtcgctt gatcaaggag tttagggtgg
      301 ctatgtaccc accctcagtt gtacggagaa catcaattgg ccaaaaagac aaacagcaag
      361 cgcaaagagt atacgaaaga cgatgtgaag ctgctcaagg ctcattcgaa agcccgcacg
      421 cctgtgtcca agatctccaa actaatgaag aggtccgaag ggtcgttgag gcagaaggcg
      481 cgcgcgctcg gcatcggttt aggtcatcag cgctaaggcc gtgaacacaa gcggtgccgt
      541 aggcgtcagg catttagaaa gagccccggc gatataacac gccggggctc ttcaagatca
      601 tcaggccggg tacatccgcc gcgccatccg atcgtagctg tcactgatta ctccagccga
      661 tctggcgcaa ggtgtgaagg cgatgcggca tccttgtgat gacattctgg ctgaaaactg
      721 gcagccgcag ctctcgcttc cgccagtcag cgcgccgacg aagttcaatc gcctgctctc
      781 gtgaccggct tcgtgaatgg cgatccgcac gtcctgatcg aacgagcgac cgggcaccgg
      841 ggacgagtca tcatcgcctc catcgatctc cggctcggga ccgctgcagc ggatgctgtt
      901 ctcagctccg gcaccgacag cgattcccat tgcggccgca cagcttgcaa cctgctcgct
      961 ggcctcgtcg gccggaatat ctttagccaa ggcgcagcac cttcaactgg cgcgcctgca
     1021 tgcgcgcgcg aatagcggcg accgtgtcct cgccgatcag cggcatcgat gcgagacact
     1081 gtctccgaca aggcccacaa ggggagagtt ggtcttgaga atgcacatct caacctcatt
     1141 agtcaccctc aacccgccac gcgtttgctc caccgctccg caaaccgatg cagcggcagg
     1201 aaagtttcga acagctcctg gcccagcccc gtcagccgat agccatcgcc gggcacgagc
     1261 tcgacaagac cggcctcgcg cagttcggtg agccgcgtct gcaggatggt cggcgaggcc
     1321 tcgtcgcagg ccgcgcgcag cgcgcgcgag gtcagcgcgc cctcgcgcaa ttcccagacg
     1381 atccgcaagg tccagcgccg gccgagcagg tcgagcagcg ccatgatcgg gcggccggtc
     1441 cgggagctgc gaacggcgcg tttcttcatg gcggagacat gtttttgcat cgcaaccgct
     1501 cttgcgtctt gctacatata ttgtagcgta ttgctacaat aaatgtagca ctatggatat
     1561 agcagaggtg ccggccatgt cacgtatcgc gccgctggag ccgccctatc cttccgaaat
     1621 tcagcagcaa ttcgaccgca tcatgcgcgg tgcgccgccg ctggtcctgt ttcgcgtgat
     1681 ggccgcccac ccgcgcgcct gggaaaaatt ccgtggcggc agcctgctcg accgcgggcc
     1741 gctgtcgttg cgccaacgcg agatcgtgat cgaccgcacc tgtgcgctga accggtgcga
     1801 gtatgaatgg ggcgtgcatg tcgcgacctt cgcggaagcc gcccgcctca ccgaggcgca
     1861 ggtccgcgcg accgtgctgg aaaaacccga caccgattgc tggtcggcgc ccgagcaggc
     1921 gctgctcgcc gccgtcgatg cgctgcacgc ccgcgcgacg ctggatgatg ccgagttcaa
     1981 ggcgctgtcg gcgcactatg acaacgacaa gatcctggaa atcatcctgc tctgcggctt
     2041 ctaccgcacc gtgtcgtatc tcgcgaacgc gctcgctctg ccgctggaag cgaagggggc
     2101 gcgatttccg cggtagattg gcagggtggg caaaagcgca gcgtgcccac catttcgcgc
     2161 gaggtgctga tggtgggcac ggcgcaaggg cgcctttgcc caccctacaa aaacgcctct
     2221 tacgccacgc ccgcccgcaa cagatcgtgc aggtgcacga tgccgatcgg ctttctggcg
     2281 tcggtgacga tcagcgccgt gatcttggaa gcattgagca gttccagcgc ttcgcctgcg
     2341 agcgtatcgc ggccgatcgt cttcgggttt ccggtcatga cgtcatcgac cagcgcggtc
     2401 atcaggtcgg gtcgcatgtg gcggcgcaaa tcgccgtcgg tgacgatgcc gacgatgtgg
     2461 cccttggcat cgacgatgcc gacgcagcca aaacccttgg ccgacatctc gaccagcgca
     2521 tccgacatcc tggtgcccac cggcttcagc ggcaccgcgt cgcccgaatg catgaggtcg
     2581 cgggtatatt tcagcatggc gcccagcttg ccgccgggat gcagcacgct gaaatcggtc
     2641 gaggtgaagc cgcggccctc caatagcgcg atcgccatgg catcgccgag cgccagcatc
     2701 atcagcgagg aggtggtcgg cgccagattg tgcgggcagg cctcgcgcgt cttcggcagg
     2761 actagcgaaa cgtcggcggc ctcggcgagc gtcgattcct tttccgccgt catcgcgatc
     2821 agcgggatgc cgaaccgcgc cgcgtaggtg atcaggttct tcatctccgg ctgctcgccg
     2881 gaccaggaca tcgccaggat cacgtcgtcg gcggtgatca tgccgagatc gccatggctc
     2941 gcctcggcgg catggacgaa gaacgctggc gttcccgtcg aggcgaaggt cgccgcgacc
     3001 ttgcggccga tatggcctga cttgccgagg ccggtgacga tcaatcgccc cttggcgttc
     3061 ctgatcattt cggcggccgc ggcaaacggt gcggcgagat cggattgcag cgcggcggtg
     3121 atcgccgaaa ctccgctggc ctcggcgtcc agcgtccgca gcgccgactg gatggcagtg
     3181 tcagcggatg aggggccgga tgagtatgcc gtcatcggtt tcggtttggc catgtcgcgt
     3241 ccagcgagga ggggacgttg ccccgggcgc cctccttagc atggccgttc cggcgaggcg
     3301 acgcgggcgg gcgacttctc aacgggccat taaccataat tgttttaact ccattaacga
     3361 cgttttccgg ccatgtccgg gcccgttgtc taagtagatg aattcgctgg ggtatttcca
     3421 tcgtggtgct ggggccagca aggggccggt atgggcgcgc ggctcttttc cgcgtgcttt
     3481 tgccatgcct tgcgctcacc gtttcgaacc tgtcggtccg cgcccaaatc gtcacgcccg
     3541 acctgttcag cccggtcaga accagcgaga tcgccacgcc ggattcgccg ctgcgccgga
     3601 ccgccgccga agccgccgat ccgctcaacg atccccgcct gcagcgcgac aaggagcgcg
     3661 agagccgcgc gccgtcgcgc g
//
LOCUS       DASQVK010000396         3619 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_152563,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000396 DASQVK010000000
VERSION     DASQVK010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3619
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152563"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..956
                     /locus_tag="VE567_08615"
     CDS             <1..956
                     /locus_tag="VE567_08615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009821158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acylglycerol kinase family protein"
                     /protein_id="HYZ48940.1"
                     /translation="VALLSNPRSTGNRALLPRVRAYCAGHPDIFHYEVEEVRQIPDAM
                     RTIARVNPKVIVINGGDGSVQAVLTELHGGKYFGANPPPVAVLPNGKTNLIALDLGAQ
                     GDPLQALEKILGLAQLDLAPHIVRRELIALSDGRDSRPVLGMFLGGAGLADSILYCRN
                     KIYPLGLPNGISHLLTALAVIISTVLGVRAAFLPPRPAPIQVRLEQGGQLSGRYTLLI
                     VTTLERLLLGSRAEGAGGHLKLMAVEQRPGTLFRAVLASVRGRLGRLRLRGVHIEQGD
                     EIEIAGERSSVILDGELFQTSAGRPIVLRTTQPVPFLKLAA"
     gene            968..1813
                     /locus_tag="VE567_08620"
     CDS             968..1813
                     /locus_tag="VE567_08620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48941.1"
                     /translation="MGALYDLIADELALPVDARVTATATAIAARHRGARAVLFYGSCL
                     RTGQIDGQMLDFYLIVRDYREAFGKRWLAFANRLIPPNVFPFAADGVAAKYAVLSEAD
                     FARLVRPEASTVSVWARFAQPVRLVWAADEAARRMAAGAVAEAPATLLSLAPPERDLL
                     ERWRRGFELTYGAELRAERGDRPGSIVDWDSPRYARIGAAAAPRPLYSEARWRKLRRA
                     GKAMTLLRLAKASLTFAGGVDYLAWKINRHADAGIVLRPWQRRFPLLGALILLPRLLR
                     KGAIR"
     gene            complement(1770..>3619)
                     /locus_tag="VE567_08625"
     CDS             complement(1770..>3619)
                     /locus_tag="VE567_08625"
                     /inference="COORDINATES: protein motif:HMM:NF017077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYZ48942.1"
                     /translation="AQRHSFEVIILVRTLQSTMAQAELSLARYVVNLQPQFGRVYVDE
                     WRRAGFSIDRLRQVTRDNPQQVALTAQLRAYYDERGNLLSDAALRTRYDQKISGLTFF
                     DRAGKTASVRELDGTFDRIIQVENRLLDQRIKQANATLAQSNWAATLLLMFAVVILTG
                     AAALGYGVIQALAGRGLARRRADEVTRHALELEEAVAERTAELRRANEALRDEAAERE
                     AAEAQLRQAQKMDAVGRLTGGIAHDFNNMLAVVIGGLELAKRRLEADSSEADRHLSNA
                     MEGASRAAALTRRLLAFARAEPLMPEAISPDTLIAGMTDLLDRTLGERIRVRTRFDSG
                     DWTIWVDRHQLENSLLNLAVNARDAMEGEGVLTIETGMRSLTEGELASLSAGDYVAIS
                     VSDTGCGIDPKLLERVFEPFFTTKPVGKGTGLGLSQLFGFVRQSNGDIAIASQQGAGT
                     TVTLLLPRHIGLASALPAAAEMSRALPVTRPPETGTILVVEDDPRVLNATVEALTELG
                     HIPIPCPAPDQAEALIAANPQVRLIISDVVMPGTTGPELISWLRPLYPHLSVLFVTGY
                     AGEIDEVAAFGGHDVLRKPFTIGALSNAVQAALAKASVSPPFEAAAAAE"
BASE COUNT          562 a         1205 c         1223 g          629 t
ORIGIN      
        1 cggtcgcgct cctttccaat ccgcgttcga cgggcaaccg cgcccttctc ccgcgcgtgc
       61 gcgcctattg cgcggggcac cccgacattt tccattatga agtggaagaa gtgcgtcaga
      121 tcccggacgc gatgcgcacg atcgcgcggg tcaaccccaa ggtgatcgtc atcaacggag
      181 gcgacggatc ggtgcaggcg gtgctgacgg aactgcacgg cggcaaatat ttcggcgcca
      241 acccgccgcc ggtcgccgtg ttgccgaacg gcaagacgaa cctcatcgcg ctcgatctcg
      301 gcgcgcaggg cgatccgctc caggcgctcg agaagatcct gggcctcgct cagctggacc
      361 tggcgccgca tatcgtccgg cgcgagctga tcgcgctttc agacggccgc gacagccggc
      421 ctgtcctggg catgttcctg ggcggcgccg ggctggcgga ctcgatcctg tattgccgca
      481 acaaaatcta tccgctcggc ctccccaacg gcatcagcca tttgctgact gcgctggcgg
      541 tgatcatatc cacggtgctt ggcgtccgcg ctgcgttcct gccgccgcgg cccgcgccga
      601 tccaggtccg gcttgaacaa ggcgggcagt tgtccgggcg ctataccttg ctgatcgtga
      661 ccacgctcga acggctgcta ctcggcagcc gggccgaagg cgccggcgga catctgaagc
      721 tgatggccgt cgagcaacgg cccgggacgc tgttccgcgc ggtgctggcg agcgtgcgcg
      781 gacggctcgg gcgccttcgt cttcgcggcg tccatatcga gcagggcgac gagatcgaga
      841 ttgcgggaga gcgctccagc gtgatcctcg atggagaact gttccagacg agcgccggca
      901 ggccgatcgt gctgcgcacc acccagccgg ttccgttctt gaagctggcg gcttaagccc
      961 ggccccgatg ggcgcacttt acgacttgat cgccgatgag ctcgcgctgc cggtcgatgc
     1021 gcgcgtgacg gcgacggcga cggcaattgc ggctaggcac cgcggcgctc gcgcggtgct
     1081 gttctacgga tcgtgtctga gaaccgggca gatcgacggg cagatgctcg acttctacct
     1141 catcgtccgc gactatcgcg aagcgtttgg caaacgctgg ctcgcctttg ccaatcgcct
     1201 gatcccgccc aacgtgttcc cgttcgccgc ggacggggtc gctgccaaat atgccgtgct
     1261 gagcgaagcc gattttgcgc ggctcgtcag gcccgaggcg agcaccgtgt cggtctgggc
     1321 gcgcttcgca cagccggtgc ggctggtctg ggcggcagac gaggcggcgc ggcgcatggc
     1381 ggccggggcc gttgccgaag cgccggcaac gttactgtcg ctcgcgcctc ccgaacggga
     1441 cctgctcgag cgctggcgcc gcggctttga gctgacctat ggtgccgagc tgcgagccga
     1501 acgaggcgac cggcccggct cgatcgtcga ctgggactcg ccgcgctacg cccgtatcgg
     1561 cgccgcggcg gcaccgcggc cgctctattc ggaagcacgc tggcgaaagc tccgcagggc
     1621 aggcaaggcg atgacgctgc ttcgcctcgc caaggcgagc ctgaccttcg ccggcggcgt
     1681 cgactatctc gcctggaaga tcaatcgcca tgcggacgcg ggtatcgtcc tgcgcccctg
     1741 gcagcggcgc tttccgctgc tcggcgcgct tattctgctg ccgcggctgc ttcgaaaggg
     1801 ggcgatacgc tagccttggc aagcgcggcc tggaccgcgt tcgacagcgc gccgatcgtg
     1861 aacggcttgc gcagcacgtc atgtccgcca aaggccgcga cttcgtcgat ctcgccggca
     1921 tagccggtga cgaacaacac gctgaggtgg ggatagagcg ggcgcagcca ggagatcagc
     1981 tccgggcctg tcgtgcccgg catcaccaca tcggaaatga tcagccgcac ctgcggattg
     2041 gccgcgatca gcgcttccgc ctgatcgggc gcgggacagg ggatcggaat atggccaagt
     2101 tcggtaagcg cttcgacggt cgcgttcagc acgcgcggat cgtcctcgac caccaggatc
     2161 gtccccgtct cagggggcct tgtcaccggc agcgcgcggc tcatttccgc tgctgcgggc
     2221 agggcagatg caaggccgat atgccgtggc agcaggagcg taacggttgt gccggcgccc
     2281 tgctgcgagg caatcgcaat atcgccgttc gattggcgta cgaacccgaa aagttggctg
     2341 aggccgaggc ctgtgccctt gccaaccggc ttggtggtga agaacggctc gaacacgcgt
     2401 tccagcagct tcggatcgat gccgcagccg gtgtcgctca ctgagatcgc gacatagtca
     2461 ccggcggaga gtgaagcgag ctcgccctcg gtcaggctcc gcatcccggt ctcgatcgtg
     2521 agcacgcctt cgccttccat tgcgtcgcgg gcgttgacgg caaggttgag cagcgagttt
     2581 tcgagctggt gccggtcgac ccagatggtc cagtcgccgc tatcgaaccg ggtccggacg
     2641 cggatccgct cgcccaaggt gcggtccagc agatcggtca tgcccgcgat cagcgtatcg
     2701 ggcgagatgg cctcgggcat cagcggctcg gcacgggcga atgccagcag gcggcgcgtg
     2761 agcgcggcgg cgcggctggc gccttccatc gcgttcgaga ggtggcggtc cgcttcgctc
     2821 gagtccgcct cgagccggcg cttcgccagt tcgaggccgc cgatcactac cgcgagcata
     2881 ttgttgaagt catgcgcgat gccgccggtc aaacggccga ccgcatccat tttctgggcc
     2941 tggcgcagct gcgcttccgc ggcttcgcgt tcggcggcct catcgcgtaa cgcctcgttg
     3001 gcgcgccgca actcggccgt gcgctcggcg acggcctcct ccaactcgag cgcatgccgt
     3061 gtcacttcat ccgcccgcct gcgcgccagt ccccgcccgg cgagcgcctg gattacgcca
     3121 tagccgagcg ccgctgcgcc ggtgagaatg acgaccgcga acatcaagag caaagtcgct
     3181 gcccaattgg actgggccag cgtcgcattc gcttgcttga tgcgctggtc gagcagccgg
     3241 ttttccactt ggatgatccg gtcgaacgtc ccgtccagct cgcggacgct ggccgtcttg
     3301 cccgcacggt cgaagaaagt gaggccgctg atcttctggt cgtagcgcgt gcgcagcgcc
     3361 gcatccgaga gcagattgcc gcgctcgtca taataagcgc gcaactgcgc ggtgagcgcc
     3421 acttgctgtg gattgtcgcg ggtgacttgc cgcagccggt cgatcgagaa gccagcgcga
     3481 cgccattcgt ccacatagac tcgcccgaac tgaggctgga gattgacgac gtagcgggca
     3541 aggctcagct ccgcctgcgc catcgtgctc tgcagcgtgc ggacgaggat gatgacttcg
     3601 aagctgtgcc gctgggcgg
//
LOCUS       DASQVK010000397         4087 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_90446, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000397 DASQVK010000000
VERSION     DASQVK010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4087
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90446"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..434)
                     /locus_tag="VE567_08630"
     CDS             complement(<1..434)
                     /locus_tag="VE567_08630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019516260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYZ48943.1"
                     /translation="MGYSKVLRAMWLAGAGAFAMAGTAAFAEDMTAAAASETASSAAD
                     QGVGEIVVTAQRRAENLQQVPISVAAVQGESLRNFQSGGDDILALSGRVPGLYAESTT
                     GRIFPRFYIRGLGNIDFYLGASQPVSIIQDDVVMEHVVLKSNP"
     gene            complement(621..1994)
                     /locus_tag="VE567_08635"
     CDS             complement(621..1994)
                     /locus_tag="VE567_08635"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HYZ48944.1"
                     /translation="MPQKWTHDSWRRFEARQLPTYPDPAALAAVENELRNYPPLVFAG
                     EARDLKRDLAEVAAGKAFLLQGGDCAESFAEFHPNNIRDTFRVILQMAVVLTFASKLP
                     VVKVGRMAGQFAKPRSSDVEEQGGVSLPSYRGDNVNDIAFTPEGRMPDPQRMVKAYSQ
                     SAATLNLLRAFAQGGYANLHQVHRWTHDFMGRSPWTKKYTDLANRIGEALDFMAACGI
                     NPETVPQLKGTTFYTSHEALLLPYEQALTRQDSLTGDWYDTSAHFLWIGDRTRFEGSA
                     HVEFMRGIGNPIGIKCGPSLEPETLLRLLDTLNPAREPGRITLITRYGYDKIEAGLPK
                     LVRAVMREGHPVVWSCDPMHGNVVKAGNGYKTRPFERILGEVRGFFAVHRAEGSFGGG
                     IHCEMTGQNVTECTGGAVEVTEQALADRYHTHCDPRLNAAQSLELAFLLAEMLNQELA
                     ERRKAAA"
     gene            2149..2496
                     /locus_tag="VE567_08640"
     CDS             2149..2496
                     /locus_tag="VE567_08640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48945.1"
                     /translation="MKMNKWLGVAVAALLASGPAAAQGASEDVRCLLAANLFAKSEKD
                     PAKQQIARFSAYYFLGRVDARLSGSELMTSLKSQGSAITAQTAGPIMTSCAKRVQSAG
                     MAIQTLGRQAGTK"
     gene            2597..>4087
                     /locus_tag="VE567_08645"
     CDS             2597..>4087
                     /locus_tag="VE567_08645"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYZ48946.1"
                     /translation="MVRRALLLSTSLVCAWSAPLLAADDIGGAAGGPADIVVLGEQAS
                     DTAGTGSKTAVDPRDVPAAIAVVPQQIIAQQAAHTLDETLTNASAVAPVFGGGYGIAD
                     NYVVRGLPVRFLRDGLPDGNSFNGYRRTLEDIAAVEVLKGPGSALYGRGEAGGTINVV
                     TKAPRESWGADAEASYGRFDSLYLTGDVGGPLAQDIASRLIGHYEHTDGFRGLQRRFV
                     DVLPTVAVELGADNRLTLDYDYRDMRTRPDNYGVPFTVNRALAPIEAGSRLYSPFNRA
                     DQTIHRFTIADTAQVSPILQLRGALIYDTRELSLVLNAGGNVVNAAGVMTGRNGRVQH
                     DDADYWTGQAEAVLTPRTGVVMHTILFGVEYSSADIDTVRRSFNLPNLTVTGGTVVAA
                     DNPAAIANSTLSFDRAISSDTLSIYAQEQADIADRVKVRAGLRYDAARLVDHGIANDV
                     QRRIAGSPGLLSWQVGAVFKASEALSFYGGYGKGKFVAINTESVSLS"
BASE COUNT          726 a         1257 c         1388 g          716 t
ORIGIN      
        1 gggttcgatt tcaggacgac atgctccatc acgacatcgt cctggatgat cgagacgggc
       61 tgcgaggccc ccaggtagaa gtcgatattg cccaggccgc ggatgtagaa gcgggggaag
      121 atgcggccgg tggtcgactc ggcgtaaagg ccaggaacac ggccggagag cgcgagaata
      181 tcgtcacccc cgctctggaa attgcgaagc gactcgccct ggacggcagc cacggagatc
      241 gggacctgct gcagattctc ggcgcgccgc tgtgcggtca cgacgatttc gccgacgccc
      301 tgatcggcag cgctcgacgc cgtttccgag gcggccgcgg ccgtcatatc ctcagcgaag
      361 gcggcggtgc ccgccattgc gaacgcgccg gcaccggcca gccacatcgc acgcaatact
      421 ttgctgtatc ccattttttt tctccgttta tgtgttttgg gcacgcgcga ccgcgccgcg
      481 cgcggcgtgc cgcccgcgga ttggatcatg ccctgtggga gaagcgctcc ccgcgctgct
      541 ctgccagcgc ggctagaggg ggttggtgtc aggattgtga cattggcaga acgatttcgg
      601 ctcgccagag gcaggaactg ctaggctgcc gccttgcgtc gttccgccaa ttcctggttc
      661 agcatctccg ccagcagaaa cgccaattcc aggctttgcg cggcgttgag gcgcgggtcg
      721 caatgggtgt gatagcggtc ggccagcgcc tgctccgtca cctcaaccgc gccgccagtg
      781 cattccgtca cattttgccc ggtcatttcg caatggatgc cgccgccgaa actgccttcg
      841 gcgcgatgaa cggcgaagaa cccgcggact tcgccgagaa tgcgctcgaa ggggcgggtc
      901 ttatagccat tgccggcctt gacgacattg ccgtgcatcg gatcgcagct ccacaccacc
      961 ggatggcctt cgcgcatcac cgcgcggacc agcttgggca ggccggcctc gatcttatca
     1021 tagccgtagc gagtgatgag cgtgatccgg ccaggctcac gcgcgggatt gagcgtatcg
     1081 agcaggcgca gcagcgtctc gggctcaagg cttgggccgc acttgatgcc gatgggattg
     1141 ccaatgccgc gcatgaactc gacatgcgcc gagccctcga aacgagtgcg gtcgccgatc
     1201 cagaggaaat gcgcgctggt gtcgtaccaa tccccggtaa ggctgtcctg ccgggtcaga
     1261 gcctgctcat aggggagcag caacgcttcg tggctggtat agaaggtcgt gcctttcaat
     1321 tgcggcaccg tctcgggatt gatgccgcac gccgccataa agtccagcgc ctcgccgatc
     1381 ctgttggcga gatcggtata tttcttggtc caggggctgc ggcccatgaa atcatgggtc
     1441 cagcgatgga cctggtgcag attggcatag ccgccctgag caaaggcgcg gagcaggttc
     1501 agggtcgccg ccgactggct gtacgccttc accatccgct gcggatcggg catacggccc
     1561 tccggcgtga aggcgatgtc gttgacattg tcgccgcgat aggagggcag gctgacgccg
     1621 ccctgctcct cgacgtcgga cgaacgcggc ttggcgaatt ggcctgccat ccggccgact
     1681 ttcacgaccg gcagcttgga ggcgaaagtc agcaccaccg ccatctgcag gatgacgcgg
     1741 aaggtgtccc ggatgttgtt cgggtggaac tcggcgaagc tttcggcgca gtcgccgccc
     1801 tggagcagaa aggctttgcc cgcagcgact tcggccagat cgcgcttcag gtcgcgcgct
     1861 tcgccggcaa agacgagcgg tggataattg cgcagctcgt tttccacggc ggcaagcgcc
     1921 gccgggtcgg gataagtagg gagctggcga gcctcgaacc ggcgccagct atcgtgtgtc
     1981 catttctgcg gcatagcgcg cagcaattgc gggagggcgc gggcgattgc aacccaagtc
     2041 cctctatcgc ggtgatcggg tgtttctatc gaccgaccgg caggggaacg ggacaggtgg
     2101 aaccgggttc gctacacgag accagcaggc tcaaaggaaa ggcgagacat gaaaatgaat
     2161 aaatggcttg gtgtggcggt ggctgcactg ctggcgagcg ggcccgctgc tgcgcagggc
     2221 gccagcgagg atgtgcgctg cctgctggcc gcgaatctgt tcgccaagag cgaaaaggac
     2281 ccagccaagc agcagatcgc acggttttcc gcttattatt tcctcgggcg cgtggatgcg
     2341 cgcctttcgg gatcggagct gatgacgtcg ctcaagtcgc aaggctcggc gatcaccgcg
     2401 caaaccgccg ggccgatcat gacgtcgtgc gccaagcgcg tgcaaagtgc cgggatggcg
     2461 atccagacac tgggccgcca ggccggcacg aaatgacagg cacgggcgat cactgagatc
     2521 gcttgactct aatgataatg attagcaata gcgtcggtga ggccgggcga cgggacccgg
     2581 cagccaggga attgtcatgg tccgccgcgc gttgcttctc tccacatcgc tggtttgcgc
     2641 ctggagcgcg ccgcttctgg cggccgacga cattggcggc gcggcaggcg gcccggccga
     2701 catcgtcgtt ttaggcgagc aagcctccga tacggctgga acgggcagca agaccgcggt
     2761 cgacccgcgt gacgtaccgg ccgcgatcgc agtcgttccg cagcagatca tcgcgcagca
     2821 ggcggcgcac acgcttgacg agacgctgac caatgccagc gccgtcgcgc ctgtattcgg
     2881 cggcggctat ggcattgccg ataattatgt cgtgcgcggc ctgccggtgc ggttcctccg
     2941 cgatggcctg cccgatggca acagcttcaa cggctatcgc cgcacgctgg aggacatcgc
     3001 tgcggtcgag gtgctgaaag ggccgggatc ggcactctat ggacgcgggg aagccggcgg
     3061 cacgatcaac gtggtgacca aggccccgcg ggaaagctgg ggcgcggacg ccgaggcttc
     3121 gtacggccgg ttcgacagcc tgtacctcac cggcgatgtg ggcgggccgc tggcgcaaga
     3181 catcgcttcg cggctgatcg gtcattacga gcacaccgat ggatttcggg gattgcagcg
     3241 ccgcttcgtc gacgtgctgc cgacggtcgc cgtcgagctc ggcgccgaca accgtttgac
     3301 gctggactat gattatcgtg acatgcggac gaggccggac aattacggcg tcccgtttac
     3361 ggtcaaccgg gcgctcgcgc cgatcgaggc cggctcgcgg ctctacagcc ccttcaaccg
     3421 ggcggaccag acgatccacc gcttcacgat cgcagacacg gcgcaggtct cgccgatcct
     3481 gcaactgcgc ggcgcgctga tctacgatac gcgcgagctg tcgctggtgc tcaacgccgg
     3541 cggcaacgtc gtcaatgcgg ccggcgtgat gaccggacgc aatgggcgcg tgcagcatga
     3601 cgatgcagat tactggaccg gccaggcgga ggcggtgctg acgccgcgga caggcgtagt
     3661 catgcacacc atcctgttcg gggtggaata ttcttcggcc gatatcgaca cggtgcggcg
     3721 gagcttcaac ctgcccaatc tgaccgtgac gggcgggacg gtggtagcgg cggacaatcc
     3781 ggcggcgatc gcgaacagca cgctaagctt cgaccgcgcg atcagctccg atacgctctc
     3841 catctatgcg caggagcagg ccgacattgc ggaccgcgtg aaggtccgcg cggggctccg
     3901 ctacgatgcg gcgaggcttg tggaccatgg catcgccaac gacgtccagc ggcggatcgc
     3961 gggcagcccc gggctgctta gctggcaggt gggcgcggtg ttcaaggcga gcgaggcgct
     4021 gtccttctat ggcgggtacg gcaagggcaa gttcgtcgcg atcaacacgg aatcggtgtc
     4081 gctgtcg
//
LOCUS       DASQVK010000398         2671 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_311932,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000398 DASQVK010000000
VERSION     DASQVK010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2671
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311932"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(22..1458)
                     /gene="cysS"
                     /locus_tag="VE567_08650"
     CDS             complement(22..1458)
                     /gene="cysS"
                     /locus_tag="VE567_08650"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017665732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HYZ48947.1"
                     /translation="MHGAPLRLFNSLTRQIEAFEPVHPGEARVYTCGPTVYNYQHIGN
                     MRAYVFADTLGRVLSFKGCKLRHVINITDVGHLTSDADEGADKMEQAAMRAGKSAWDI
                     ARFYTEAYWRDIDRLNIRQPATWSIATDYVPAMIEFAKSIADEHCYVLPSGLYFDTAT
                     VPDYGRLARSKTDEGESRIEAVEGKRHPTDFAIWRSTPPGETRQMEWESPWGRGAPGW
                     HLECSVMSEALLGFPFDIHTGGIDHREIHHPNEIAQNQARCHSADTGARIWMHNNFLI
                     DRGGKMSKSAGEFLTLQALVDRGFHPLAYRLMCLQAHYRSELEFSFDNLAAAFTRLKR
                     MVMAAEKLPEATFAEVTDKRIATEVAAFDEAVSDDLNTARALTHFETVLTTRGLDAGE
                     RRSALAQMDGVLGLEVLKLDRAALRVRPADTAIDESEIEAKLAQRREARAAKDFATSD
                     RVREELLAAGVEVMHGDPLGWDWKLAAD"
     gene            complement(1510..>2671)
                     /locus_tag="VE567_08655"
     CDS             complement(1510..>2671)
                     /locus_tag="VE567_08655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48948.1"
                     /translation="VVTASGRIAVDGAATGQTIAFTSNDLAIAATGQLGSKTQTSSIT
                     LTSTADRLFLGDAAGAGYHIDNGELTRIATAGDLAIVSAPTNAQGNAFALADPAGANV
                     VIGSISYDGAQLGPSGTFRISSPRSIGFTGNAQFKNFSNGQTVTFAALNDISLAAETG
                     LVTVKDSSGALTGTLRLEAQQVHAMSTSARSDIAGLGLNEARQRLGTNDQVQNDGGYF
                     QAGQIDVRIGRLLFIQNSGANSDKPDDRRGFSANSFTIESTGTQPAQFIVNGRIGTGK
                     GADLASQTTLIGSFDPQSGFNGCFAGSACGITQIEVAPALSNSRDQIESQEKEDEKEE
                     ALKASQKRPQPVIQFVEAPKSRFEPLVDEPVTGAGNEDLWEPSGPGAINPIP"
BASE COUNT          417 a          844 c          900 g          510 t
ORIGIN      
        1 ggatcaagtc cggcatgacg atcagtcggc tgccaacttc caatcccagc cgagcgggtc
       61 gccgtgcatg acttcgacgc ctgcggcaag cagctcctcg cggacgcggt cggaagtcgc
      121 gaagtccttc gccgcgcggg cttccctgcg ctgcgccagc tttgcctcga tctcggattc
      181 gtcgattgca gtatcggccg ggcgaacccg cagcgccgcg cgatcgagtt tcagcacctc
      241 gaggccgagc acgccgtcca tctgggcgag tgccgagcgg cgctcgccgg cgtccagccc
      301 cctggtcgtc agcaccgttt cgaaatgcgt cagcgccctg gcggtgttga ggtcgtccga
      361 cactgcttcg tcgaaggcag cgacttcagt cgcgatgcgc ttgtccgtga cttcggcgaa
      421 cgtcgcttcc ggcaatttct ccgccgccat caccatccgc ttcaaccggg tgaacgccgc
      481 tgcgagattg tcgaagctga actccagctc gctgcgatag tgcgcctgga ggcacatcag
      541 gcgataggcg agggggtgga agccgcggtc gaccagtgcc tgcagggtca ggaattcccc
      601 tgccgacttg gacatcttgc cgccgcgatc gatcaggaaa ttattgtgca tccagatgcg
      661 cgcgccggtg tcggcggagt ggcagcgcgc ctggttctgc gcgatctcgt tcgggtgatg
      721 gatttcgcgg tgatcgatgc cgccggtgtg aatgtcgaag gggaagccga gcaatgcctc
      781 cgacatcacc gagcattcga gatgccagcc gggggcgcca cggccccagg gcgattccca
      841 ctccatctgc cgcgtctcgc ccggcggggt ggagcgccag atcgcgaagt cggtcgggtg
      901 gcgcttgcct tcgaccgcct cgatccggct ttcgccttcg tcggtcttgg agcgggcgag
      961 gcgaccataa tcgggcacgg tcgcggtgtc gaaatagagg ccgctcggca gcacatagca
     1021 atgttcgtcg gcgatcgatt tggcgaactc gatcattgcg ggcacataat cggtcgcgat
     1081 cgaccaggtg gcgggctggc ggatgttgag ccggtcgatg tcgcgccaat aggcttcggt
     1141 gtagaagcgt gcgatgtccc aggcggactt gccggcgcgc atcgccgcct gctccatctt
     1201 gtccgcgcct tcgtcggcat cggacgtcaa atggccgaca tcggtgatgt tgatgacgtg
     1261 gcgcagcttg cagcccttga agctcagcac gcggcccaac gtgtcggcga acacataggc
     1321 gcgcatattg ccgatatgct ggtagttata gacggttggc ccgcaggtat agacgcgcgc
     1381 ttcgccggga tggacgggct cgaaggcctc gatctggcgc gtgaggctgt tgaacaggcg
     1441 aagcggggca ccgtgcatgg cgcccgcctt ggcccggagg cgagggaagc gtcaaccgct
     1501 cccctcgcat tacgggatcg ggttgatcgc acccgggcct gacggctccc acagatcctc
     1561 attgcctgcg ccggtcacgg gttcatcgac cagcggctcg aagcgcgatt tcggcgcctc
     1621 gacgaactgg atcaccggct ggggccgttt ctgcgaggcc ttcagcgcct cttccttctc
     1681 gtcctctttt tcctggctct cgatctgatc gcgcgagttg gacagcgcgg gcgcaacctc
     1741 gatctgagtg atgccgcacg ccgagcccgc gaagcagccg ttaaagcccg attgcggatc
     1801 gaagctgccg atcagcgtgg tctggctggc caggtccgcg ccctttcctg tgccgatgcg
     1861 tccgttgacg atgaactgcg caggctgggt gccggtggat tcgatcgtga agctgtttgc
     1921 cgagaagccg cgccggtcgt cgggtttgtc gctgttcgcg ccgctattct ggatgaacag
     1981 gagccgcccg atgcgaacgt cgatctgccc ggcctggaaa tagccgccgt cattctggac
     2041 ctgatcgttg gtgccgagcc gctgccgcgc ctcgttcagg ccgagcccgg caatgtcgct
     2101 gcgcgccgag gtcgacatcg cgtggacctg ctgcgcctcg agccgaagcg tgccggtaag
     2161 agcgccgctc gaatccttga ccgtgaccag cccggtttcc gccgcgagcg agatgtcgtt
     2221 gagcgccgcg aaagtgacgg tctggccatt ggaaaaattc ttgaactggg cgttgccggt
     2281 aaagccgatc gaccgcggcg agctgatcct gaacgtgccg gagggtccaa gctgcgcgcc
     2341 gtcatagctg atcgatccga tcacgacgtt cgcgcccgcc gggtctgcca gcgcgaaggc
     2401 gttaccctgc gcgttcgtgg gagccgagac gatagccaga tcgccagccg tggcgatccg
     2461 ggtcagttcg ccgttgtcga tatggtagcc ggcgcccgcc gcgtcgccca ggaagagccg
     2521 gtccgcggtg ctggtcagcg tgatgctgct ggtctgcgtc ttgctgccaa gctggccggt
     2581 ggcggcaatg gcgagatcgt tcgaagtgaa ggcgatcgtc tggcccgtcg cggcgccatc
     2641 gaccgcgatc ctgccggacg cggttacgac g
//
LOCUS       DASQVK010000399         3907 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_468973,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000399 DASQVK010000000
VERSION     DASQVK010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3907)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3907)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3907
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_468973"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(187..837)
                     /locus_tag="VE567_08660"
     CDS             complement(187..837)
                     /locus_tag="VE567_08660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HYZ48949.1"
                     /translation="MTELNFEAMRRAMVEGQLRTTGVNDPRVVAAMAVVPRERFVPAE
                     WRALAYMDRPVPLGGGRALNLPEATGLLLTAATVRPSDRVLVVGAGTGYAAALLARLA
                     DRVVALEEDSQLLAAARLALAGERVEIVEGPLEEGWPAGAPYDLIMLDGLVEHIPDAL
                     VEQLHDGGRFICALLDDGASRLAVGRKSGGAFGLELFADCEAVTLPGFAKPKSFVF"
     gene            1082..2626
                     /locus_tag="VE567_08665"
     CDS             1082..2626
                     /locus_tag="VE567_08665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014075045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
                     /protein_id="HYZ48950.1"
                     /translation="MSEDPAPAPWWKRAVFYQIYPSSFADSNGDGFGDLPGIIDRIGH
                     VASLGVDAIWLSPFFTSPMKDFGYDVADYRAVDPRFGTLADFDRLVARAHALGLKIVI
                     DQVWSHTSDRHAWFRASAARDPAYADWYVWADARPDGSPPNNWRASFGGPAWSWHPGR
                     RQYYLHNFLPEQPDLNFHCPAVQDAILDVARFWLDRGVDGFRLDVINHVAHDRLLRDN
                     PVHAQAGPPAATIGCQRQRHNKSQPEGLAFAERVRALLDSYGDRMAVGEIFDDDMLGR
                     QRDYTDGPTRLHTAYSFHLLNAAAASPALFREAIEAWVGAPGWPSWSLGNHDVPRFPT
                     RLAGDDPRVTRTLITLLMCLPGTPFLYQGEELGLPQARVPYEALRDPFAIASWTEEAQ
                     EAGRDGARTPMPWAATTPDGWLPLDPRHRALSVEAQEEDRESMLRFTRRLLALRKSLP
                     ALQTGATALRDAPDGVLAFERNLGGETLLCLFELSGQDCGLAPEGETLFGALPLRAFG
                     HAIVRL"
     gene            2678..2751
                     /locus_tag="VE567_08670"
     tRNA            2678..2751
                     /locus_tag="VE567_08670"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2710..2712,aa:Cys,seq:gca)
     gene            2961..3191
                     /locus_tag="VE567_08675"
     CDS             2961..3191
                     /locus_tag="VE567_08675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48951.1"
                     /translation="MAAEVPHGAELAVLAHGRVSGDRAVTGAQMGLGRIFPHEIVDGV
                     LDKRGRSTIVSMGASATLFRTNLVTKDLKSII"
     gene            3646..3879
                     /locus_tag="VE567_08680"
     CDS             3646..3879
                     /locus_tag="VE567_08680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48952.1"
                     /translation="MRHLGQASANDPANLYGFTFAADDYETILPSPLDAAALEQAAGP
                     EKAAVPGPDAEAEETIDYGRLQKAIQRNREWYR"
BASE COUNT          648 a         1273 c         1315 g          671 t
ORIGIN      
        1 gatcggcaca ttctcgtcat tcgcccgctg ctgcgcgcgc gcgccggtga gcgtcggatt
       61 gtaattatag gctttggcga gtgcgccctg cagcgtttcc gccacagcgg ccccggcaaa
      121 ggcgatggcc gcggtggtgg cgatcaggac aaaagggagg gagcgcatcc ttcgttctac
      181 tctcggctag aagacgaaac tcttcggctt ggcgaagccg ggcagcgtca ccgcttcgca
      241 gtccgcgaac agctcgaggc cgaacgcgcc gccggatttg cgaccgaccg cgaggcgcga
      301 cgcgccatcg tcgagcagcg cgcaaatgaa acggccgccg tcgtgcaact gctcgaccag
      361 cgcgtccgga atgtgttcga ccaggccgtc aagcatgatc aggtcatagg gcgcgcctgc
      421 cggccagcct tcttcgagcg ggccttcgac gatctcgacc cgctcgccgg ccagcgccag
      481 gcgcgccgcg gcgaggagct gcgaatcctc ctccagcgcc acgacccgat cggccaggcg
      541 cgcgagcaat gccgccgcat agccggtccc tgcccccacc acgagcacgc ggtccgacgg
      601 gcgcaccgtt gcggcggtga gcagcagtcc ggtcgcttcg ggaaggttca gcgcgcggcc
      661 gccgccgagc ggcacgggcc ggtccatata ggcgagcgca cgccactccg ccggcacgaa
      721 gcgctcgcgc ggcaccaccg ccatcgccgc aaccacgcgg ggatcgttga cgccggtcgt
      781 ccgcaactgg ccttccacca tcgcccggcg catcgcttcg aaattcagct cggtcatcag
      841 cccgcctctt tgcacaactg ttttagctgc gcaatacact tgcgcgccag tcgcgtcgtc
      901 ttatcggcag gaacgggcaa ggccaagcgg gacatgccct atggtcagca agcgccgtgc
      961 cagcggccgc ggctctcggg cgtggttggg agtggcgggg aggacctgtc cgaaatcgga
     1021 caggtctgtt cgcagacgga caggctcgac gcgagtgcgg cgatcggcca tgcgaggcgc
     1081 gatgagcgag gatcccgccc cggcgccctg gtggaaacgc gcggtcttct accaaatcta
     1141 tccgtcgagc tttgccgatt cgaacggcga cgggttcggc gacctgcccg gcatcatcga
     1201 ccggatcggc catgtcgcct ccttgggcgt ggatgcgatc tggctgtcgc ccttttttac
     1261 ctcgccgatg aaggatttcg gctatgacgt ggcagactat agggcggtcg atccgcgctt
     1321 cggcacgctg gccgatttcg accggctggt cgcgcgggcg catgcgctgg gactgaagat
     1381 cgtcatcgac caggtctggt cccacacgtc cgaccggcat gcctggttcc gggcgagcgc
     1441 ggcgcgcgat cccgcctatg ccgactggta tgtgtgggcg gacgccaggc cggacgggtc
     1501 gccgcccaat aactggcgcg cttcctttgg cgggccggcc tggagctggc acccggggcg
     1561 gcggcaatat tatctgcata atttcctgcc cgagcagccg gacctgaact tccattgccc
     1621 ggccgtgcag gatgcaatcc tggacgtggc gcgcttctgg ctggaccggg gcgtggacgg
     1681 cttccggctc gacgtgatca atcatgtcgc gcacgaccgg ctgttgcggg acaatcccgt
     1741 ccacgcacag gcgggaccgc cagcggcgac gatcggttgc cagcgccagc gtcataataa
     1801 atcgcagccc gagggactgg cctttgcgga gcgggtgcgg gcgctgctcg acagctatgg
     1861 ggatcggatg gcggtcggcg agatattcga cgacgacatg ctggggcgcc agcgcgacta
     1921 tacggacggg ccgacgcggc tgcataccgc ctatagcttt cacctgttga acgcggcggc
     1981 cgccagcccg gctctgttcc gcgaagcgat cgaggcctgg gttggggctc cgggctggcc
     2041 cagctggtcg ctcggcaatc acgacgtgcc gcgctttccg acccggctgg cgggcgacga
     2101 tccgcgggtc acgcgcacgc tgataacctt gctgatgtgc ctgccgggaa cgccgttcct
     2161 ctaccagggc gaggaactcg gcctgcccca ggcgcgcgtg ccgtatgagg cgctgcgcga
     2221 ccccttcgcg atcgcgagct ggaccgagga agcgcaggag gccgggcggg acggggcgag
     2281 gacgccgatg ccgtgggcgg ccacgacgcc cgacggctgg ctgcccctcg atccccggca
     2341 tcgcgcgctc tccgtcgagg cccaggagga ggaccgggag tcgatgctgc gcttcacgcg
     2401 acggctgctg gcgctgcgca agtcgctgcc ggcgctgcag accggcgcga cggcgctgcg
     2461 cgatgccccc gacggcgtgc tcgcgttcga acgaaacctc ggtggcgaaa ccctgctgtg
     2521 cctgttcgag ctgagcggtc aggattgcgg cctcgcgcct gagggcgaaa cgctgttcgg
     2581 cgctctcccc ctccgcgctt tcggacacgc gatcgtgcgc ctctgacgaa gtttcgactt
     2641 gaccgcgcgg ccaagcttcc cgaaatgccg cccttccggc ccgatggcgg agtggttacg
     2701 cagaggactg caaatccttg cacgccggtt cgattccggc tcgggcctcc atcccgcgac
     2761 tgcgatctag ttcaggcggc cagtccgata cgcgcgctcg tccgcgccgc gcctgcaagc
     2821 cagtggctgc gtgcgccttg tgtgcaatca tcgatttggg cgatcaggcg ctgatagctt
     2881 tcgcgactcc gcggggccgc gcgctccgat agacacatgc actccgcctt tgcctgcccc
     2941 aggtgaagga gaaggccgag gtggcggccg aggtccctca cggagctgaa ttggccgtgc
     3001 tcgctcatgg ccgggtcagt ggcgatcgcg ccgtcacagg cgcgcaaatg ggtttgggca
     3061 ggatatttcc gcatgagatt gtcgatggtg tcctcgataa gcgcggccgc tccacgatcg
     3121 tgtcgatggg cgccagtgca acgctctttc gcacgaacct ggtgactaaa gacttaaaaa
     3181 gcatcattta aaacggccgc gtgtgcgcgt gagatgatgc cgaggccaag tcgctcgatg
     3241 ctcgcgcaag tacgagcata atattccgcc tccgttccga atcctgcggc gaggagggtt
     3301 cttatcaaca gtgtcaatgg agccgagctg gcgacgcttg aagccaggcg ggacatgggc
     3361 ctcggcttca tcggaaagct gccatgagca cgcatttctg cctgttctac gaaacgcttc
     3421 aggatcttct caacgacgtc aacgccgcgt ttctgtcagc cgggctcaag gtgcgcccgg
     3481 ggcaaggaag cggccggcga gcgggacgtc ggcccgcgga cggtcgagtt ccatctcaag
     3541 cgcatgctac cgactgatca atagtcgttt cggagcgtta accaaattcc agaggctttc
     3601 cgctaccttg atccggttag atggatttga ggcaggagaa ggcccgtgcg acatttgggt
     3661 caggcaagcg cgaacgatcc cgcgaacctt tatgggttca ctttcgcggc cgatgattac
     3721 gagacgatcc ttccctcgcc gctcgatgcg gcggcgctgg agcaggcggc gggacccgaa
     3781 aaggctgcag tgccgggtcc tgatgccgaa gccgaagaaa cgatcgatta cggccggctg
     3841 caaaaggcga tccagcgcaa tcgcgaatgg tatcggtagt cagaccggcc ggtcgaggct
     3901 ggccggc
//
LOCUS       DASQVK010000400         2814 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_279399,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000400 DASQVK010000000
VERSION     DASQVK010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2814
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279399"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..641)
                     /locus_tag="VE567_08685"
     CDS             complement(<1..641)
                     /locus_tag="VE567_08685"
                     /inference="COORDINATES: protein motif:HMM:NF020037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HYZ48953.1"
                     /translation="MTILLASALPLAVMTLVAASGMHLGWPLLVLATGTIGFDALLIV
                     RCLANVRALALRREAPVTLAEAVQGARVQLLDHPHCDADWSWRIDAGRNLVAVSPRLA
                     YALGDDARVLEGRSFLQILAGETWESGNFPAALRTLADKIKNKECFEGLILPVTIKGE
                     TLWWEISGAPEADERGGFAGFSGTGIDVTAERHSADKINRMARYDTLTGLPNRL"
     gene            complement(754..2475)
                     /locus_tag="VE567_08690"
     CDS             complement(754..2475)
                     /locus_tag="VE567_08690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acyl-AMP ligase"
                     /protein_id="HYZ48954.1"
                     /translation="MEDLSATPTEDGLPRRFSDFATVTEALDYAARGARGFNFCDARG
                     ALARAYPYAELRHDALAHAYRFLARGVGKGDRIALIAETGPDFAALFFGAIYAGAWPV
                     PLPLPTSFGGASAYVDQLKVQLESCDPLMLIYPAELASMAGEAARQSGVTGIAWEDFT
                     SNAAAAVALQAPQPDDVAYLQYSSGSTRFPHGVAVTHRGLLNNLSAHSHGMELQDSDR
                     CVSWLPWYHDMGLVGCMLSPVANQVSVDYLKTEDFARRPLAWLDLISRNPGTSISYSP
                     TFGYDICARRMSSQTRASDRFDLSRWRIAGNGADMIRPDVMQSFVDAFADAGFDAKAF
                     LPSYGLAEATLAVTIMPPGEGIQVELVEETELSGGKAANDGPQRFRAVVNCGKPAKDM
                     IVEIRDEDGAPLPERAIGKVWCQGPSVMVGYFRDPDATAACLVDGWLDTGDMGYLSGG
                     YLYIVGRAKDMIIINGKNHWPQDIEWAVEQLPGFKAGDIAAFAITTPGGEETPAVLVQ
                     CRTSDPEERARLRDAIRERVRSVTGMNCVVELVPPRTLPRTSSGKLSRAKARNLYLSG
                     EIQPLAA"
     gene            2636..>2814
                     /locus_tag="VE567_08695"
     CDS             2636..>2814
                     /locus_tag="VE567_08695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecX family transcriptional regulator"
                     /protein_id="HYZ48955.1"
                     /translation="MAQSWRSGPGAGRARGAAPLDAPALERFALRYVERYATTRARLA
                     DYLSRKLRERGWAGE"
BASE COUNT          487 a          917 c          946 g          464 t
ORIGIN      
        1 aggcggttcg gcaagccggt cagtgtgtcg tagcgcgcca tgcggttgat cttgtccgcg
       61 gaatggcgct ccgccgtcac gtcgatgccg gtgccgctaa agccggcaaa gccgccccgc
      121 tcatcggctt cgggtgcgcc cgaaatctcc caccacaggg tttcgccctt gatcgtgacg
      181 ggcaggatca ggccttcgaa gcactcctta ttcttgatct tgtcggcaag cgtgcgcagc
      241 gcggcgggga aattgcccga ttcccacgtc tcgccggcaa ggatctggag gaaggagcgg
      301 ccttccaaca cccgcgcatc gtcgcccagg gcgtaagcaa ggcgcggcga gacggcgacc
      361 aggttgcgcc ccgcatcgat ccgccacgac cagtcggcat cgcaatgcgg gtggtcgagg
      421 agctgcacgc gcgcgccttg caccgcttcg gccagcgtca ccggggcttc gcgcctgagc
      481 gccagcgcgc gaacattggc gaggcagcgg acgatcagca gagcgtcgaa gccgatcgtg
      541 ccggttgcga gcaccaacag cggccagccc agatgcatcc cgcttgcagc gaccagcgtc
      601 atcacggcca acggcagcgc cgaagccagc aaaatggtca cggctatggt ccccacaaag
      661 ctcgggggaa agctgccgtc ggcctgtccg gtgcggattc tcgtcaccgc acccggataa
      721 acctagttcg ttagcaatga gtaatcagcg cgttcaggct gcgagcggct ggatttcgcc
      781 cgagagatag aggttgcggg ccttggcgcg gcttagcttg cccgagctcg tgcgcggcaa
      841 ggtgcgcggg ggcaccagct ccacgacgca attcatgccg gtgacgctgc gcacccgttc
      901 gcgaatcgcg tcgcgcagcc gtgcgcgctc ctccgggtcg gaggtgcggc attggaccag
      961 caccgccggc gtctcctcgc cgccgggggt ggtgatcgcg aaagcggcga tgtcgcccgc
     1021 cttgaagccc ggcaattgct ccaccgccca ttcgatgtcc tggggccagt gattcttgcc
     1081 gttgatgatg atcatgtcct tggcgcggcc gacgatgtag agatagccgc cggacagata
     1141 gcccatgtca ccggtgtcga gccaaccatc gaccaggcag gccgccgtcg cgtcggggtc
     1201 gcggaagtag ccgaccatca ccgatggacc ctggcaccac actttaccga tcgcgcgttc
     1261 gggaagcggc gcgccgtcct cgtcgcggat ctccacgatc atgtccttgg ccggcttgcc
     1321 gcaattgacg acggcgcgga accgctgcgg cccgtcattg gccgccttgc cgccggaaag
     1381 ctccgtttcc tcgaccagtt cgacctggat gccttcgccg gggggcatga tggtgacggc
     1441 cagcgtcgct tcggcgaggc cgtagctcgg caggaaggcc ttggcgtcga agcccgcatc
     1501 ggcgaaggcg tcgacgaagg actgcatcac gtccgggcgg atcatgtcgg cgccattgcc
     1561 ggcgatccgc cagcgcgaca ggtcgaagcg gtcggacgcc cgcgtctggc tcgacatgcg
     1621 gcgggcgcaa atgtcgtagc cgaaggtcgg cgaatagctg atcgacgtgc ccggattgcg
     1681 gctgatgaga tcgagccagg cgagcggacg gcgcgcgaaa tcctcggtct ttaggtaatc
     1741 gaccgagacc tggttcgcga caggggacag catgcagccg accaggccca tgtcgtgata
     1801 ccagggcagc caggaaacgc agcggtcgct gtcttgcagc tccatgccgt gcgagtgagc
     1861 ggagagattg ttgagcaagc cgcgatgcgt gaccgcgacg ccgtgcggga agcgcgtcga
     1921 tccgctggaa tattggagat aggcgacatc gtcgggttgc ggcgcctgca gcgcgaccgc
     1981 ggcggcggcg ttgctcgtga aatcttccca ggcgatgccg gtcacgccgc tctggcgcgc
     2041 cgcttcgccg gccatcgatg cgagctcagc gggatagatc agcatcagcg gatcgcagct
     2101 ttcaagctgg accttcaact ggtcgacata ggccgaggcg ccgccgaacg aagtgggcaa
     2161 gggcagcggc accggccagg cgccggcata gatcgcgccg aagaacaagg ccgcgaaatc
     2221 gggtcctgtc tcagcgatca gggcaatgcg gtcgcccttg cccacgccgc gtgcaaggaa
     2281 gcgataggca tgcgccagcg cgtcgtggcg cagctcggca tagggataag cgcgagcgag
     2341 cgcgccgcgc gcgtcgcaga aattaaatcc gcgggccccg cgcgctgcat agtccagcgc
     2401 ctcggtgacc gtcgcgaaat ccgaaaagcg gcgcggaagc ccgtcttccg tcggcgttgc
     2461 gctcaaatct tccatttcgt tcgcgtacga ccctgctttg attgccgcgg gcgcttgcat
     2521 catcgcgaga agcccttttc ccttgcctca ccacccttta acgtccggaa tccggacatg
     2581 aggctcttca aatcgctttc ttcccgtgct gccgcggtga aaatcggacc tgactgtggc
     2641 acaatcgtgg cgtagcggcc cgggggccgg acgcgcaagg ggcgccgcgc cgctcgacgc
     2701 gccggcgctt gagcgattcg cactgcgcta tgtcgagcgt tacgcgacca cgcgcgcacg
     2761 gttggccgac tatctttccc gcaagctccg cgagcgcggc tgggccggcg aaga
//
LOCUS       DASQVK010000401         2430 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_469098,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000401 DASQVK010000000
VERSION     DASQVK010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2430
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_469098"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..238
                     /locus_tag="VE567_08700"
     CDS             <1..238
                     /locus_tag="VE567_08700"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYZ48956.1"
                     /translation="RIRYRRQGLGRALLEQVAADALDQGTRTLHLEVRACNPAIALYR
                     DAGFEQVGIRQAYYRGRRGKVFDALTFKRHLADD"
     gene            341..757
                     /locus_tag="VE567_08705"
     CDS             341..757
                     /locus_tag="VE567_08705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019368356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucR family transcriptional regulator"
                     /protein_id="HYZ48957.1"
                     /translation="MTEQSEMKETLITLTADIVAAHVSNNSVAVNDLPTLIANVHGAL
                     SGLGTPAPQPESKPEPKVSIRSSVKPDYIVCLEDGKKLKMLKRHLMTHYNMTPEQYRQ
                     KWNLPADYPMVAPNYAEQRRSLAKKIGLGTKRRRGR"
     gene            830..1252
                     /locus_tag="VE567_08710"
     CDS             830..1252
                     /locus_tag="VE567_08710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017184208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HYZ48958.1"
                     /translation="MHRKIDVEALCHQKGLRITDQRKVIAQVLSESDDHPDVEKVHAR
                     ASAIDPGISIATVYRTVRLFEEAGILERHDFGDGRARYEAAPEAHHDHLIDVETGRVI
                     EFVDPELELLQRQIAERLGFRLVDHRMELYGVALDRKS"
     gene            1263..2138
                     /locus_tag="VE567_08715"
     CDS             1263..2138
                     /locus_tag="VE567_08715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010234480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HYZ48959.1"
                     /translation="MPIDAAARAAIAAGEPTQISPIGWVRILLRATGLFLGLLICVPF
                     HYLFHFVRLGSPWPKWYLGYAARICGARVKRVGVPLKRDVFFIANHLSWIDILAIAGE
                     SGTAFVAKEELAKAPLVGWLATLNRTVFVKRENRMGVAEQINQLRDALSENWSVTVFP
                     EGTTTDGQSLLPFKTPMLRVLEPPPPGVMVQPVMLDYGRMGEEVGWIGNESGLNNAKR
                     LLARRGSFPLKVHFLDPFHPRDFPGRKAIAAESRNRILEALVQALGRPLRPFAYDVAP
                     VRYEAALPDEGPTAL"
     gene            2195..>2430
                     /locus_tag="VE567_08720"
     CDS             2195..>2430
                     /locus_tag="VE567_08720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010336028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HYZ48960.1"
                     /translation="MNVYDGERMAELLAAQGLQAADGEDADLVVLNTCHIREKAAEKV
                     YSEVGRLRREDGTRPLVAVAGCVAQAEGAEIHRRT"
BASE COUNT          455 a          799 c          759 g          417 t
ORIGIN      
        1 gcgcatccgc tatcgccgcc agggcctagg gcgagccttg ctggaacaag tggcggccga
       61 cgcgctggac caaggcacgc gcacgctgca ccttgaggtg cgcgcctgca atccggccat
      121 tgccctgtac cgcgatgcgg gcttcgagca ggtaggaatt aggcaagcct actatcgcgg
      181 ccgtcgcggc aaagtcttcg acgcactgac attcaagcgt catcttgccg acgactagcc
      241 ggttaccaaa ctttgggctt gaactcgcgg tcgacccaag acattggcct tcgcgaccat
      301 cgttcccgat gatcacgcca atatgagagc gaatagagcc atgactgagc agtccgagat
      361 gaaagaaacg ctgatcacgc tgacggcaga cattgtcgcg gcgcatgtca gcaacaacag
      421 tgtcgccgtc aacgatctgc cgaccctgat tgcgaacgtg catggtgcgc tgagcgggct
      481 cggcacgccg gcgccacagc cggaatcgaa gccggagcca aaggtctcga tccggtcctc
      541 ggtcaagccc gactatatcg tttgccttga agacggtaaa aagctgaaga tgctgaagcg
      601 tcacctgatg acgcattaca acatgacccc ggagcaatat cggcagaaat ggaacctgcc
      661 cgccgattac ccgatggttg ccccgaatta tgccgagcag cgccgctcgc tcgccaagaa
      721 gatcggtctc ggcaccaagc gtcgccgcgg acggtaacgc cttcgaaaag cccttccccg
      781 tcaaggggag gggctttctg cctgccgcta aacccattac atcggcggaa tgcatcgcaa
      841 gatcgacgtc gaggcgctct gccaccaaaa agggctccgc atcactgacc agcgcaaggt
      901 gattgcgcag gttctgtcgg aatcggacga ccatcccgac gtggagaagg tccatgcccg
      961 cgcgtcggcg atcgaccccg gcatctcgat cgcgactgtc tatcgtaccg tccgcctgtt
     1021 cgaggaagcg ggcattctcg aacgccatga tttcggcgac ggccgcgccc gctacgaagc
     1081 agcgccagag gcgcatcacg atcatctgat cgatgtcgag accggccggg tgatcgagtt
     1141 cgtcgatccc gagctggagt tgctccagcg gcagatcgcc gagcggctcg gtttccgcct
     1201 cgtcgaccat cgcatggagc tttacggcgt cgcgctcgac cgcaagagct gacgcagcga
     1261 ccgtgccgat cgatgcggct gcccgcgccg ccatcgccgc cggggagccg acgcaaatct
     1321 cgcccatagg ctgggtgcgc atcctcctcc gcgccaccgg tctgttcctg ggcctgctga
     1381 tctgcgtgcc gttccactac ctcttccatt tcgtccggct cggctcgccc tggcccaaat
     1441 ggtatctggg ctatgccgcc cgcatctgcg gcgcgcgcgt gaagcgggta ggcgtgccgt
     1501 tgaagcgcga tgtcttcttc attgccaacc atctgagctg gatagatatc ctggcgattg
     1561 ccggcgagag cggcacggcg ttcgtagcca aggaggagct ggccaaggcg cctctggtcg
     1621 gctggctcgc gacgctcaac cgcacggtgt tcgtcaagcg cgagaaccgc atgggcgtgg
     1681 ccgagcagat caaccagctg cgcgacgcgc tatccgaaaa ttggtccgtg accgtcttcc
     1741 ccgagggcac cacgaccgat ggccagtcgc tgctgccgtt caagacgccg atgctgcgcg
     1801 tgctggagcc gcccccgccc ggcgtgatgg tccagcccgt gatgctcgat tatggccgga
     1861 tgggcgagga agtgggatgg atcggcaacg agtccggcct gaacaacgcc aagcgcctgc
     1921 tcgccaggcg cggcagcttt ccgctgaagg tccatttcct ggacccgttc cacccacgcg
     1981 acttccccgg gcgcaaagcc atcgccgccg aaagccggaa ccggatcctg gaagcgctgg
     2041 tgcaagcgct cggccggccg ctccggccct tcgcttacga tgtagcgccg gtccgctacg
     2101 aagcggccct tcccgacgag ggcccgacgg cgctataggc gcgcgcgtga atcgctctcc
     2161 ccaaacctat cgcgtgaagt cgttcggctg ccagatgaac gtctatgacg gcgagcgcat
     2221 ggccgagctg cttgctgccc aaggcctgca ggcggctgat ggcgaggatg ccgatctggt
     2281 cgtgctcaac acttgccata tccgcgaaaa ggcagcggag aaggtctatt ccgaagtcgg
     2341 gcggctacgg cgcgaggacg gcacgcggcc gctggtcgcg gtcgccggct gcgtggccca
     2401 ggccgaaggc gccgagatcc accgtcgcac
//
LOCUS       DASQVK010000402         3826 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_247543,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000402 DASQVK010000000
VERSION     DASQVK010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3826)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3826)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3826
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247543"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1220
                     /gene="thrS"
                     /locus_tag="VE567_08725"
     CDS             <1..1220
                     /gene="thrS"
                     /locus_tag="VE567_08725"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003047471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HYZ48961.1"
                     /translation="LQAEAHGSIFWHPKGYLIWRQLEAYMRRRLDAAGYQEVKTPQIM
                     DARQWEQSGHWGKYRENMFVIPDEVPNTEDEGPVISGDAEWMALKPMNCPAHLLIFRQ
                     GIKSYRDLPLRMAEFGCCHRNEPHGALHGLMRVRQFTQDDAHIFCRADQLVEEVALFC
                     NLLDGVYKDLGFDKYAIKLALRPEKRFGSDEMWDWSEQSLRDAVAATGRATPEFGWEE
                     LPGEGAFYAPKLEFHLTDAIGRTWQVGTIQTDTVLPERLDASYVGEDGQRHHPIMLHR
                     AILGSFERFIGILIEHYAGKFPLWLAPVQAVVATIVSDADHYASEVVAALAKAGLRAE
                     ADLRNEKINYKVREHSLAKVPYLLVVGKREAEERTVALRPLGADARQEVLSLDEAVAR
                     LRAEAVPPDLRSA"
     gene            1217..1891
                     /locus_tag="VE567_08730"
     CDS             1217..1891
                     /locus_tag="VE567_08730"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYZ48962.1"
                     /translation="MTQAAFTRHHPGERLARHRHPEAYVALVLAGGYVEAGDGARIVA
                     EPGMVIVHEGYDAHRDDFGRGGATVLNLPLLPGLRGVGRAADPDAVVGLAERDPYAAA
                     ALLAQTVAPASPHLGDWPDLLAAALAGGEEVALADWARGLGIAAPSLSRGFRQAYGVS
                     PKRYRLEQRTRSALRRLPGWRGTFAALAAETGFADQAHLTRAVVALTGVPPQRLKVQS
                     VQAGRS"
     gene            1911..3065
                     /locus_tag="VE567_08735"
     CDS             1911..3065
                     /locus_tag="VE567_08735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48963.1"
                     /translation="MNRRAFIAASLTALAASALPGQTPAATATRWRVRESEGFDAIAF
                     LGPLSGRELYRKHYAADADAFAARLTPAIREDVLALWADAEPNVGLLWPSLTSFLSGT
                     ELASLDQVIAALADPERIARPAYQASIYWDAKDWAWFVGAAPRLGRVFEAMRAADFAG
                     FRKERAAGLAMRVPEVQQSLAGYDVIAWQRKLTGRAFTPTIDIYLLQFSKPHGVKVQG
                     QAFLQAADYDVATTVRIAAHEMLHPPIPMDGPAAKAALAVLEKDPLMMRIVREHDPRW
                     GYTTLEGLLNEDLCQALDQLISEKLAVARDPAERWRKADDGMHVLAGGLYGLLRADGW
                     AERGGSIEAWLVDAVHRGRLAPATLYPAAARVLQRPADRLWPLESPPSKG"
     gene            3206..3739
                     /gene="infC"
                     /locus_tag="VE567_08740"
     CDS             3206..3739
                     /gene="infC"
                     /locus_tag="VE567_08740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016745460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HYZ48964.1"
                     /translation="MMRRPMAPPALTGPRFNEFIQSPKVRVIDENGENLGVMYTREAI
                     EQAREVGLDLVEVSPNADPPVCKFLDVGKFKYEAQKKANAARKSQKTQEIKEIKMRPN
                     IDDHDYDTKMKKIFEFIEEGDKVKVTLRFRGRELSHGQLGMQLLQRVQADTTEIAKIE
                     AHPRMEGRQMLMVLAPK"
BASE COUNT          668 a         1282 c         1266 g          610 t
ORIGIN      
        1 atctccaggc ggaagcgcat ggttccatct tctggcaccc caagggctat ctgatctggc
       61 ggcagctcga ggcctatatg cgccgccggc tcgatgcggc gggctatcag gaagtgaaga
      121 cgccgcagat catggacgcg cgccaatggg agcagtccgg ccattggggc aaatatcgcg
      181 agaacatgtt cgtcatccct gacgaggtgc cgaacaccga agacgaaggc ccggtcatct
      241 ccggcgacgc cgagtggatg gcgctgaagc cgatgaattg cccggcgcac ctgctcatct
      301 tcaggcaagg catcaaaagc tatcgcgacc tgccgctgcg catggcggaa ttcggctgct
      361 gccaccggaa cgagccgcac ggggcgctgc acggcctgat gcgcgtgcgc cagttcaccc
      421 aggacgacgc gcacatcttc tgccgcgcgg atcagctcgt cgaggaagtg gccttgttct
      481 gcaacctgct ggacggggtc tataaagacc tcggcttcga caaatatgcg atcaaactcg
      541 ctctccggcc cgaaaagcgc ttcggcagcg acgagatgtg ggattggtcg gaacagagcc
      601 tgcgcgatgc ggtggcggcg accggacgcg ccacgcccga attcggctgg gaagaactgc
      661 ccggcgaggg cgccttctat gcgccgaagc tggagttcca cctgaccgac gcgatcggcc
      721 gtacatggca ggtcggcacg atccagaccg acacggtgct gcccgagcgg ctcgacgcgt
      781 cctatgtcgg cgaggacggg cagcggcacc acccgatcat gctccaccgc gccatcctcg
      841 gcagtttcga gcggttcatc ggcattctga tcgagcatta tgcgggcaaa ttcccgctct
      901 ggctcgcgcc ggtgcaggcg gtggtggcca cgatcgtgtc ggacgcggac cattatgcgt
      961 ccgaggtcgt ggcggcgctg gcaaaggcag ggcttcgtgc cgaggccgat ctgcgcaacg
     1021 agaagatcaa ttacaaagtg cgcgagcata gcctcgccaa agtcccgtac ctgctggtcg
     1081 tcggcaaacg cgaggctgag gaacgaaccg tcgccctccg tccgcttggc gccgacgcgc
     1141 gccaggaagt gctatcgctc gacgaagcag ttgcgcggct gagggcggaa gccgtgccgc
     1201 cggacctcag gagcgcatga cccaggcggc gttcacgcgc caccatcccg gcgagcgcct
     1261 cgcgcgccat cgccatccag aagcctatgt cgcgctggtg ctcgcgggcg gctatgtcga
     1321 agccggcgat ggcgcgcgga tcgttgccga gcccggaatg gtgatcgtgc acgagggcta
     1381 tgacgcgcac cgcgacgatt tcggccgcgg cggcgcgacc gtgctcaacc tgccgctgct
     1441 gccgggacta cgcggcgtcg ggcgagcggc agacccggat gctgtggtcg gcctcgccga
     1501 gcgggatcct tatgccgcgg cggctctgct cgcgcagact gtcgcgcctg cgtcgccgca
     1561 tctcggcgat tggcccgacc tgcttgcggc cgcactcgcc ggcggtgagg aggtggcgct
     1621 cgccgactgg gcgcgcggcc tcggcatcgc cgcaccctcg ctcagccgcg gcttccgcca
     1681 ggcctatggc gtcagcccga agcgctaccg gctggaacag cgcacgcgtt cggcgttgcg
     1741 gcggctgccg ggctggcgcg gcacattcgc cgcgctggcg gctgaaacgg gctttgccga
     1801 ccaggcgcat ctgacgcggg cggtggttgc gctcaccggc gtgccgccgc agcggctcaa
     1861 ggtgcagtcc gttcaagcgg gccggagctg atccgcgcta ggcagcggcc atgaaccgtc
     1921 gtgccttcat cgccgcttcg ctgaccgcgc tcgccgcttc ggccttgccg ggccagacgc
     1981 cggctgcaac cgcgacacgc tggcgcgtcc gcgaatccga aggctttgac gccatcgctt
     2041 ttctgggccc actttcgggc cgcgagctct accgcaagca ttacgccgcc gatgcggacg
     2101 ccttcgccgc ccggctgacg ccggcgattc gcgaggatgt tctcgcgctc tgggcggatg
     2161 ccgagccgaa tgtcgggttg ctttggccaa gcctgaccag ctttctctcc ggtaccgagc
     2221 tggcgagcct cgatcaggtg atcgcggccc tggcggatcc ggaacggata gcccgccccg
     2281 cctatcaggc gagcatctat tgggacgcga aggattgggc ctggttcgtc ggcgctgcac
     2341 cacgtctggg acgggtgttc gaggcgatgc gcgcggcgga tttcgccggg ttccgcaaag
     2401 aacgcgcggc cggcctcgcc atgcgagtcc cggaagtcca gcagagcctt gccggctacg
     2461 acgtcatcgc ctggcagcgc aagctcaccg gccgcgcctt caccccgacg atcgacattt
     2521 acctcctgca attctctaag ccgcacggcg tcaaagtgca gggtcaggcc tttcttcagg
     2581 cggccgatta cgatgtggcg accaccgtcc ggattgccgc gcacgaaatg ctgcatccgc
     2641 cgatcccgat ggatgggccc gccgcaaagg cggcgctggc ggtgctcgaa aaggacccgc
     2701 tgatgatgcg catcgtgcgc gagcatgatc cgcgctgggg ctacaccacg ctcgaggggc
     2761 tgctgaacga ggatctgtgc caggcgctcg accagctgat cagcgaaaag ctggccgtcg
     2821 cccgcgatcc cgccgagcgc tggcgcaagg ccgatgacgg catgcatgtg ctggccggcg
     2881 gcctgtacgg cctgctccgc gcagacggct gggccgaacg cggcggctcg atcgaggcct
     2941 ggctcgtcga cgcggtgcac cgcggccgcc tcgcccccgc aacgctctac cccgccgccg
     3001 cgcgcgtgct gcagcggccc gcagacaggc tctggccgct ggaatctcct cctagcaagg
     3061 gctaagcggc ggccgccagg cccggccgca tgctgcaatc gcgccacagg cggaacagaa
     3121 ttgcgcgcgc gggctttccg cgaggcgcgc caatgactat tttagctggc ctcaacctcc
     3181 aaggagaagc tttatacgtc ctcccatgat gcggcgcccg atggcgcccc ccgcgctgac
     3241 cggtccgcgc ttcaacgagt tcatccagag ccccaaggtt cgggtgatcg acgagaatgg
     3301 cgaaaatctc ggcgtgatgt acacccgcga ggccatcgag caggcgcgtg aagtcgggct
     3361 agaccttgtc gaagtgtcgc ccaacgccga tccgccggtg tgcaaattcc tcgacgtcgg
     3421 caagttcaaa tacgaggccc agaaaaaggc caatgccgcc cgcaagagcc agaagacgca
     3481 ggagatcaag gagatcaaga tgcgtccgaa catcgacgac cacgactatg acacgaagat
     3541 gaagaagatc ttcgagttca tcgaggaagg cgacaaggtc aaggtgaccc tgcgctttcg
     3601 cggtcgcgaa ctcagccacg gccagctcgg catgcagctc ctccagcgcg tccaggcaga
     3661 cacgaccgag atcgccaaga tcgaggccca tccgcgcatg gaaggccgcc agatgctgat
     3721 ggtgctcgcg cccaaataag cggcgcgact cgcgaagctt tcgccgtttc ccaaatcggg
     3781 atcaaaagcg gtttgcaaca tatactccgc cgccgatcgc ggattt
//
LOCUS       DASQVK010000403         2529 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_406026,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000403 DASQVK010000000
VERSION     DASQVK010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2529
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_406026"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            651..2456
                     /locus_tag="VE567_08745"
     CDS             651..2456
                     /locus_tag="VE567_08745"
                     /inference="COORDINATES: protein motif:HMM:NF024491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HYZ48965.1"
                     /translation="MATEIIVHPGVDSAFIAWRAPFIDECRGFSLRRRIKRGPGSAAS
                     PNTTSQPDPAGFVEEIVASWVGFANGPAAEAGTRKPTTEWPIQKYLWSDFMVSPGDEV
                     AYRVIPMIGSAGALKPADAYASPWSPTVTIGAETDGHAGCFFNRGIVASQWLARLLPE
                     AQPSTKLAKAIATPGDRIRNFLAGPIRDKLVALLREANAAKAHVYAALFELDDPELIP
                     LLQAFRKRAHLVLGNGSVKRKGEDENENARSALDMCDVRDRMTAPRALAHNKFLVICD
                     EAKAPQAVWTGSTNWTKTGLCTQANNALLVRNAALAQFYLDQWKSLAAAGEATPPALY
                     QANAAPRVPARGKGTTLWFTPMHDPLDLEQAGELLAGAQEGILFLMFNPGPRGTLLND
                     IIELASPSSPNFKPDLYIQGVVNQNPGTEKNPVSLFNRGERIDANDDVVLPAAIPGHL
                     KFWQPELLKLPRAHAMVHSKVIVIDPYGAKPIVMTGSHNMGPKASGVNDENLIFIEGN
                     RELASQYAGKIMEIYSQYRWRSSVQAADGAPKWQGLADDAQWQIKDPSRPYDKRRIRE
                     LDFWFGAATAAARAGETGAARARSARGGRRARPAQ"
BASE COUNT          488 a          832 c          859 g          350 t
ORIGIN      
        1 gaacaggggc tcggtgaaga aataattcag gcagccgacc gcgatcacag agacgaggat
       61 cgatcctatg aagctgcccg tcaaagagag cagcgcgatg agggcgacgt acgaaaagcc
      121 gacggtagcc agatcgaagc cgagccggaa ccccacatag gtgagccccg ccacgcctat
      181 gatccccatc gcgcactgcg cagcggagcg ccagtaagga aatctcttgt cgcgcctcgg
      241 gtggtcggtt tgcgcgctca cttagcggcc gccgtccagc aagggatggc aagcgcagga
      301 cgacccacag ggtcgcggtg gcgcaactgc ttcgcacgga tcattttcca agcctttcga
      361 ccggaaacgt cctcggagcg ttctaggata tcggcaggtc gcggcgcgat aaagccgcac
      421 aacagttatt agcagcgacc gaacccgcga tgacgtgcgg tcgctcgccg ggacgggtgc
      481 gttcgagaag gcgcggcacg gccgcagcgg gtgcgccgga ccgtgaccgt ggttgcaccg
      541 ctcgcggtgt gggccaacaa gagcaatcaa actgtcactg ccaccgctta tgacgatcgc
      601 gctcgtcagc atgccgcgat ccgggcatgc gcatgtgggg gacattttcg gtggcgaccg
      661 agatcatcgt gcatccgggt gtcgacagcg cgttcatcgc gtggcgcgcg cccttcatcg
      721 acgaatgccg cggcttctcg ctgcggcgcc ggatcaagcg cgggccgggc agcgcggcga
      781 gcccgaacac gacgagccag cccgacccgg ccgggttcgt cgaggaaatc gtcgcgagct
      841 gggtcggctt cgcgaacggg ccggcggcgg aggccggcac gcggaaacct acgaccgaat
      901 ggccgatcca gaaatacctc tggtcggatt tcatggtttc gcccggcgac gaagtggcct
      961 accgcgtcat cccgatgatt ggctcggccg gcgcgctgaa accggcggat gcatacgcct
     1021 caccgtggag ccccaccgtg acgatcggcg cggaaaccga cggacatgcg ggctgcttct
     1081 tcaatcgcgg gatcgtcgcg agccagtggc tcgcccggct gctcccggag gcgcaaccct
     1141 cgaccaagct cgcaaaagcg atcgcgacgc ccggggacag gatccggaac ttcctcgccg
     1201 ggccgatccg cgacaagctc gtggcgctgc tccgcgaggc caatgccgcg aaggcgcacg
     1261 tctacgcggc gttgttcgag ctcgacgatc ccgaactgat cccactgctc caagcgttcc
     1321 ggaagcgcgc ccatctcgtg ctcggcaacg gcagcgtgaa gcggaagggc gaggacgaga
     1381 atgagaacgc ccgctcggcg ctcgacatgt gcgacgtgag agaccgcatg accgcgccgc
     1441 gcgcgctcgc gcacaacaag ttcctggtga tctgcgacga ggccaaggcg ccgcaggcgg
     1501 tctggaccgg cagcacaaac tggacgaaga cggggctctg cactcaggcg aacaacgcgc
     1561 ttctggtgcg caacgccgcg ctcgcgcaat tctatctcga ccagtggaag agcctggccg
     1621 ccgctgggga ggcgacgccg cccgcgctct atcaggcgaa cgcggcgcca cgggtgccgg
     1681 cccgcggcaa ggggacgacg ctctggttca cgccgatgca cgacccgctc gacctcgagc
     1741 aagcgggcga gctcctggcc ggggcgcagg aagggatcct gttcctcatg ttcaacccgg
     1801 gtccgcgcgg cacgctgctc aacgacatca tcgagctcgc ctcgccatcg agcccgaact
     1861 tcaagccgga cctctacatc cagggcgtcg tgaaccagaa cccgggcacc gagaagaacc
     1921 cggtgagcct cttcaatcgc ggcgagcgca tcgacgccaa cgacgacgtg gtgctgcccg
     1981 cagccatccc gggccacctg aaattctggc agcctgagct actgaagctg ccgcgcgccc
     2041 acgcgatggt gcacagcaag gtgatagtga tcgatcccta tggcgcgaag cccatcgtga
     2101 tgaccgggtc gcacaacatg ggaccgaagg cgagcggggt gaacgacgag aacctcatct
     2161 tcatcgaggg caatcgcgag ctggcgagcc agtacgccgg caagatcatg gagatttaca
     2221 gccagtaccg ctggcgctct tcggtgcagg cggcggatgg cgcgccgaaa tggcaaggac
     2281 tcgccgacga cgcccaatgg cagatcaagg atccgagccg cccgtacgac aagcggcgca
     2341 tccgggagct cgatttctgg ttcggcgcgg cgacggcggc ggctcgtgcg ggcgaaacgg
     2401 gagcggcgcg ggcgcggtcc gcccgtggcg gacggcgcgc ccggccggcc caataggaag
     2461 cgggcgagtg tcggggaggg gccgcgctca caatcacgcg gcgccctgcc ggccgccgac
     2521 gataagccg
//
LOCUS       DASQVK010000404         2419 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_406087,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000404 DASQVK010000000
VERSION     DASQVK010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2419)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2419)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2419
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_406087"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            17..937
                     /gene="prfA"
                     /locus_tag="VE567_08750"
     CDS             17..937
                     /gene="prfA"
                     /locus_tag="VE567_08750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HYZ48966.1"
                     /translation="MGVEIADLEALLEDPRTDAEMRALAASEKPVLEERRALLEQQIQ
                     LALVPKDAMDDRNVILEIRAGTGGDEAALFAGDLFRMYERYAARQGWKVDIVSASEGA
                     AGGYKEIIAEIRGRGAFAKLKFESGVHRVQRVPNTEASGRIHTSAATVAVLPEAEEVD
                     VAINDADLKIDTLRSGGAGGQHVNKTESAVRVTHIPTGIVVMMQEDRSQHRNRAKAMA
                     ILRARLYDHERRKQDAARAAERRGQVGSGDRSERIRTYNFPQGRVTEHRINLTLYKLP
                     QVMEGEALGEIVDALITEHQAELLAMEGAS"
     gene            934..1818
                     /gene="prmC"
                     /locus_tag="VE567_08755"
     CDS             934..1818
                     /gene="prmC"
                     /locus_tag="VE567_08755"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007689248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HYZ48967.1"
                     /translation="MTAAGTLEHGPSIGAVRRRVGLDFRRAGLEAPDLDARLLVGHAL
                     RFDHAALVAQEQRRISSAETQAIALLAARRLAREPVARIIGQKEFWGLPFMLNADTLV
                     PRPETETIVEAALDFPGRARAEPLRIADLGTGSGALLLALLSELPAAYGIGTDSSVRA
                     LGCARGNAAALGLARRAAFVTCDYAAALHGPFDLIVCNPPYIPRAEIAGLAPEVRCFD
                     PLKALDGGPEGLDGFRAIAAHTPRLLAPDGRLIVELGTGQGDAVVSLFAGAGLVPTGP
                     PRRDLAGVARALIVKALS"
BASE COUNT          461 a          739 c          795 g          424 t
ORIGIN      
        1 caaagcttat cgcggcgtgg gcgtcgaaat cgctgacctc gaggcgctgc tggaggatcc
       61 gaggaccgac gccgagatgc gggcgctggc cgcgagcgag aagccggtcc tcgaggagcg
      121 tcgcgcactg ctcgaacagc agatccaact cgcgctcgtg cccaaagacg ccatggatga
      181 tcgcaacgtc attctggaaa tccgtgctgg aaccggcggc gacgaggcgg cgctctttgc
      241 cggcgacctt ttccggatgt acgagcgcta tgccgccagg caaggctgga aggtcgacat
      301 tgtctcggcc agcgaaggcg cggcgggcgg ctacaaggaa atcatcgcag agatccgcgg
      361 acgtggggca ttcgccaagc tcaaattcga atcaggcgtg catcgcgtgc aacgcgttcc
      421 caataccgag gcctctgggc gcattcatac ctccgccgcg actgtcgcgg tcctgcctga
      481 ggccgaagag gtcgacgtcg ccatcaacga tgccgacctc aagattgata cgttgcgatc
      541 gggcggcgct ggcggccagc acgtcaacaa aaccgagtcg gctgtgcgcg tgacccatat
      601 tccgaccggc attgtagtga tgatgcaaga ggatcgctcg cagcaccgca atcgcgcgaa
      661 ggcaatggcc atcttgcgag cgcggcttta cgatcacgag aggcgaaagc aggatgctgc
      721 tcgtgccgcc gagcgccgcg gccaagtcgg ctcgggcgat cgctccgaac gtatccgcac
      781 ctacaacttc ccccagggtc gggttaccga gcaccggatc aacctgaccc tctacaaact
      841 gccgcaggtg atggagggcg aggcgctcgg cgagatcgtc gatgcgttaa taacggagca
      901 ccaagccgag ttgctggcaa tggagggagc ctcgtgacgg ccgccggtac cctcgaacac
      961 ggcccctcga tcggcgcagt gcgccggcgg gtcggcctgg actttcgtcg cgccggtctc
     1021 gaggctcccg atcttgatgc tcgccttctc gtcggtcatg cgctgcgctt cgatcatgct
     1081 gcgctcgtgg cccaggagca acgcaggatc agcagcgccg agacgcaggc gattgcgctt
     1141 ttggcggctc ggcgattggc tcgcgagcca gtcgcgcgca ttatcggcca gaaggaattc
     1201 tggggcctgc ctttcatgct caacgccgac acgctggtac cccggccgga gactgagacc
     1261 attgtggagg cagcgctcga ttttccgggc cgtgcgcggg cggaacccct gcgcattgca
     1321 gatctcggca ccggttcggg tgcgctcctg ctcgcgctgc tatcggaact gccggccgcc
     1381 tatggaatcg gcaccgattc gagcgtcagg gcgctcggct gtgcccgcgg caatgctgcg
     1441 gcccttggcc ttgccagacg ggccgcattc gtcacgtgcg actacgccgc ggcgctgcac
     1501 gggccatttg atctcatcgt gtgcaatccg ccatacatcc ccagggccga gatcgcaggg
     1561 ctggcgcccg aggtgcgctg tttcgatcca ttaaaggccc ttgatggcgg gccggagggc
     1621 ctcgacggat ttcgcgcgat cgccgcccac acgccacgct tgcttgcccc ggacggccga
     1681 ctcatcgtgg aactcggcac cgggcagggc gatgcggtgg tctcgctgtt tgccggagcg
     1741 gggctcgtac ccacaggtcc gccgcggagg gacttggccg gtgtcgcgcg cgccctgatt
     1801 gttaaggctt tgtcatgagt tctccacact ttaggcccgc aaaaaattac ttggattgtc
     1861 ggtcgagagc gactaggttt tggctaggaa atcgacccga gatcctggac gcgccaaaag
     1921 aaaaaggccc gtagcgaagc tccggagagc cagaggcgcg gagagtgcga agaattgaag
     1981 ccggtttccc ggtggatctt tcgccggctt gggacgagat gcttcatcgg ttcggcgccg
     2041 gccgcgatca actgatcgaa gcggcgatgc gcgtgaaaag aggtgggcaa caccgcggaa
     2101 tagagcggtc aaggggttgc agcttcgcga aacgaaacct gacggggcgg ctatgtcgcc
     2161 gcaatttggg cttcgcgctc gttctctgga acgcggcggg ctccgcttgc gtcagaacgt
     2221 gtgaaggact ggcgaggtaa ccaggcggcg gtgccgtcac aaacgaaggg attggcgaca
     2281 ggcaaatcat gagaaacggt caaaacaagc gcatgcgcgg gcgcaatcat catcaccgca
     2341 aaagtcagaa tccgatgtca cgcgtcttcg aatctaatgg accggacgtc aaaatccgcg
     2401 gaactccgtc tcacattgc
//
LOCUS       DASQVK010000405         5671 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_26880, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000405 DASQVK010000000
VERSION     DASQVK010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5671
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26880"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..196)
                     /locus_tag="VE567_08760"
     CDS             complement(<1..196)
                     /locus_tag="VE567_08760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017499235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HYZ48968.1"
                     /translation="MQQRELGKSGLRVSAIGLGCMGLSFAYGQAPERQDAIRLLHGAV
                     ERGVTFFDTAEAYGPLTNEEL"
     gene            301..1194
                     /locus_tag="VE567_08765"
     CDS             301..1194
                     /locus_tag="VE567_08765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008070781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYZ48969.1"
                     /translation="MRREDLIDLNAFQAVAEERNFTRAAARLGISPSALSHALRRLET
                     RLGVRLLARTTRRVAPTEAGERLLRTLRPALEEIDAELASLSALRLKPAGTVRITASE
                     HAVQSVLWPKLRRVLPDYPDIRIELSADAALVDIVAERFDAGVRLGEHLGKDMIAVRI
                     GPDLCLAVVGAPSYFERHPRPETPQDLADHVCINLRLESFGGIYAWEFEKDGRELRVR
                     VDGQLTSNDVPLILRAAQDGFGLACVLEDTAEPLLAEGSLVRVLEDWCVPFAGYHLYY
                     HSRRQLSPALSVLVDALRFRG"
     gene            1399..2076
                     /locus_tag="VE567_08770"
     CDS             1399..2076
                     /locus_tag="VE567_08770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008994550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HYZ48970.1"
                     /translation="MTDADLAALQGLPVRQQVFEAGRYIVREGSSPDHSALILSGIAY
                     RHKVTVDGARQIVAMHIAGDFVDLEGALLRVADHNVQALTRCEVALVPTNALRALLDA
                     HSNLAVAMWIDTLIDGSIFREWIVNVGRRDARARIAHLLCEFARRLEVAGLADPGGYQ
                     LPMTQEQLADATGLTAVHVNRTLKALERDGLVVRHRRFVDIPVWQHLRDVAGFNELYL
                     HLDQVAA"
     gene            complement(2036..2260)
                     /locus_tag="VE567_08775"
     CDS             complement(2036..2260)
                     /locus_tag="VE567_08775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48971.1"
                     /translation="MAIRSIDADFFEMRAEQELTAAQDSRHPAVVRAHYELAGLYLDR
                     LNALQPKRHTERERLSEFRPQPDPDAGKAR"
     gene            2341..2532
                     /locus_tag="VE567_08780"
     CDS             2341..2532
                     /locus_tag="VE567_08780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48972.1"
                     /translation="MRLADPPHAKLGLRGPALEIDCQFDQRDLGQRIVEIARKATALG
                     SLIEEFRHAFCHYRKTILT"
     gene            2664..3188
                     /locus_tag="VE567_08785"
     CDS             2664..3188
                     /locus_tag="VE567_08785"
                     /inference="COORDINATES: protein motif:HMM:NF014608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HYZ48973.1"
                     /translation="MIEAQDAVLVEKTDVGRFQVQVHTGDHVFLADEPVSFGGLSTGP
                     NPFDLICAALGSCTVMTMRLYAERKGWSLDGLGVRVTHRRGSPGGRDRFERVLHLGDV
                     TAEQRERLVFIAERCPVHVLLEGGADVTTAVAETALTGGIAQGLHAQVIEALCDECTG
                     SAPRPGFQASAPPA"
     gene            complement(3315..3632)
                     /locus_tag="VE567_08790"
     CDS             complement(3315..3632)
                     /locus_tag="VE567_08790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004210272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HYZ48974.1"
                     /translation="MVALIVTSRDGDTRLIEASPDLSVMEAIRSAGIDEIVALCGGCL
                     SCATCHVYVDPGQIDLLPAPAEEENDLLDCSAHRTDRSRLSCQLALSDAPERLHVTIA
                     PAD"
     gene            complement(3635..4747)
                     /locus_tag="VE567_08795"
     CDS             complement(3635..4747)
                     /locus_tag="VE567_08795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014076208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004024 - alcohol dehydrogenase activity,
                     zinc-dependent [Evidence IEA];
                     GO_function: GO:0051903 - S-(hydroxymethyl)glutathione
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006113 - fermentation [Evidence IEA];
                     GO_process: GO:0009404 - toxin metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-(hydroxymethyl)glutathione dehydrogenase/class
                     III alcohol dehydrogenase"
                     /protein_id="HYZ48975.1"
                     /translation="MKTRAAVAFAAKAPLEVVEVDLEGPKAGEVLVEIMATGICHTDA
                     YTLDGFDSEGIFPSILGHEGAGVVREVGAGVTSVKAGDHVIPLYTPECRQCKSCLSGK
                     TNLCTAIRSTQGKGLMPDGTTRFSYKGQPIFHYMGCSTFSNFTVLPEIAVAKIRADAP
                     FKTSCYIGCGVTTGVGAVVNTARVQVGDTVVVFGLGGIGLNVIQGARLAGAGMIVGVD
                     INPDREDWGRRFGMTHFIDGRGKDRAATIEAILALTDGGADYTFDCTGNTEVMRTALE
                     ACHRGWGTSIVIGVAEAGKEISTRPFQLVTGRNWRGTAFGGAKGRTDVPKIVDWYMNG
                     KIEIDPMITHVLTLEDINKGFDLMHKGESIRSVVVF"
     gene            complement(4787..>5671)
                     /locus_tag="VE567_08800"
     CDS             complement(4787..>5671)
                     /locus_tag="VE567_08800"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HYZ48976.1"
                     /translation="MPDFAPIADRIIAELIDEVAGQSEIDFSFQFTERLTSRFWGVLL
                     GMTPQEEELVVEAVREMTPFFFIERTDEETILINGATGRYLEIVAGAIERSLAAGGNA
                     LLESMAAEFDAIDLPGKPESLGMSMAANLIDGFHTAALAAANTTYHLLRNPDALAAVR
                     ADPSLVASAHAEGLRMSAPVIVTHRYALEDFEYAGFQIPAGTAIAMVWAAGNRDPDVF
                     DNPNQYQLTRVQRADATFGGGIHICPGRNVARMISMAVLRGITQPGIRITLGDDFRWI
                     VRSTMRQPHRMPVTIERC"
BASE COUNT          977 a         1801 c         1829 g         1064 t
ORIGIN      
        1 gcagttcctc gttcgtgagc gggccatagg cttcggcggt gtcgaagaaa gtgacgccgc
       61 gctccactgc tccgtgcagc agcctgatcg cgtcctgccg ctccggcgcc tggccatagg
      121 caaagctgag ccccatgcag ccaaggccga tcgccgagac ccgcaggccg cttttgccga
      181 gttcacgctg ttgcatgggc agttcccttt ttctgcggag gaggcgtgca gcatctaggt
      241 cgcgcgccgg gcggtgatta gatgggggaa accgcatgca cttttgaaaa ggattcatga
      301 atgcggcgtg aggatctgat cgacctcaac gctttccagg ccgttgccga ggagcggaat
      361 ttcactcgcg cagccgccag gctgggcatt tcgccatctg ccctcagtca cgcgctcagg
      421 cgattggaga cgcggctcgg tgtgcggctg ctggcgcgga ccactcgccg cgtcgcgccc
      481 accgaagctg gcgagcgact gctgcgcacg ctgcggccgg ctcttgagga gatcgatgca
      541 gagctcgcct cgctcagtgc gctgcgcctc aagccggctg gcacggtgcg catcaccgcg
      601 tcggaacatg ccgtccagtc ggtgctctgg ccgaagctgc gacgcgtgct gcccgattat
      661 cccgacatcc ggatcgaact cagcgccgat gccgccctgg tcgatatcgt cgccgagcgc
      721 ttcgatgccg gcgtacgcct gggcgagcat ctggggaaag atatgatcgc ggtccgcatc
      781 ggcccggatc tctgcctagc cgtggtcggc gcgccgtcct atttcgagcg ccatccaagg
      841 ccggaaacgc cgcaggatct tgccgaccat gtctgcatca atctgcgcct tgaaagcttt
      901 ggcggcatct atgcctggga gttcgagaag gacgggcgcg agcttagggt gcgggtggac
      961 gggcagctga cctcgaacga tgtgccgctg atcctccgcg ccgcccagga cggcttcggc
     1021 ctggcctgcg tgctcgagga cacggcagag cccttgctag ccgagggcag cctggtgcgc
     1081 gtgctcgaag actggtgtgt gccgttcgcc ggctatcatc tttattatca cagccgccgc
     1141 cagctctcgc ctgcgctgtc cgtgctggtc gacgcactgc gctttcgtgg atgagctaaa
     1201 gataggagaa aatagagaaa tccatgtttg gacatggtgc ttaggatatg ttaaatgatt
     1261 tctattgccg atccgctaaa ctgggcttcg gtgactgaga gattctatgc gctcccgccc
     1321 gatttatgga gggagaacat ggacgcttcc gtttccatcc tgggtcgcat gattaggaag
     1381 tttgaacggc gcgcccgctt gaccgatgcg gatctcgcgg cgctgcaagg gcttcccgtc
     1441 cgccaacagg tgttcgaggc cggccgctac attgtcaggg aagggagctc gcccgatcat
     1501 agcgcgctga tcctttccgg catcgcctat cggcacaaag tgacggtcga cggcgcgcgc
     1561 cagatcgtcg cgatgcacat cgcgggcgat ttcgtcgacc tcgaaggcgc attgctgcgc
     1621 gttgccgatc acaatgtgca ggcgctgaca cgctgtgaag tcgccttggt gccgacgaac
     1681 gcgctgcgcg ccctgctcga cgcgcactcg aatctcgcgg tcgcgatgtg gatcgatacg
     1741 ctcatcgacg gttcgatttt ccgcgaatgg attgtaaatg tcggccggcg cgacgcgcgg
     1801 gcgcgcatcg cccatctgct atgcgagttc gccaggcgcc tcgaagtcgc cggcctcgcc
     1861 gatccgggcg gctatcagct gccgatgacc caggagcaat tggcagacgc caccgggctg
     1921 acggcggtgc atgtgaaccg gacgctcaag gcgcttgagc gcgacgggct ggtggttcgc
     1981 catcgccgat ttgtcgatat ccctgtctgg cagcacttgc gcgacgtggc tgggttcaac
     2041 gagctttacc tgcatctgga tcaggttgcg gcctgaattc gcttaggcgc tcgcgctctg
     2101 tgtggcgttt cggctgcagg gcgttgagcc tgtccagata aaggccggcg agttcataat
     2161 gcgctcgcac aacggccgga tggcgggagt cctgcgccgc cgtcagttcc tgctcggcgc
     2221 gcatttcgaa gaagtcggca tctatggagc gaatcgccat aagccgatgc tagggaaaac
     2281 ccggcagccc gacatcgaca tagatcaacg tttcggcaga tcggcctttc acgcggaccg
     2341 atgagattgg cggacccgcc ccacgcgaag ctcggcctcc gcggcccggc gctcgagatc
     2401 gactgccaat tcgatcagcg cgaccttggc caacgcatcg ttgagatcgc gcgaaaggcg
     2461 acggcacttg gcagcctgat cgaggagttc cggcacgctt tctgccatta ccgcaaaacg
     2521 atcctaacct aggttatgtt caacggctgc accgaaattg ctcgagaaat cggctcggga
     2581 ttgacaagac gaaggccttg gccaagcccg tcattcttgc acgaaatgag ctgcgacgcg
     2641 gggtcgcgta cgggagatcg actatgattg aggcgcagga cgccgtgctg gtcgaaaaga
     2701 cggacgtggg ccgttttcag gtgcaggtcc acaccggcga ccatgttttc ctggccgatg
     2761 agccggtgtc gttcggcggc ctgtcgacgg gtcccaaccc cttcgacctg atctgcgcgg
     2821 cgcttggctc gtgcacggtc atgacgatgc gcctctatgc cgagcgtaaa ggctggtcgc
     2881 tcgatggcct cggcgtccgc gttacgcacc gcaggggatc tccggggggc cgggaccgct
     2941 tcgaacgcgt cctgcatctg ggcgacgtca ctgccgagca gcgcgaacgg cttgtcttca
     3001 tcgcggagcg ctgccccgtt cacgtgctgc tggagggcgg ggcggacgtc acgaccgcgg
     3061 tcgccgaaac ggcgctgacg ggcggcattg cccaaggact gcacgcgcaa gtcatcgaag
     3121 cgctgtgcga cgaatgtacg ggcagcgctc cccggcctgg ctttcaggcc tccgcgccgc
     3181 cggcctgagc gaaagacgtc gtaaaaaact tctttcgagc gctcgccatt tcggcgccag
     3241 gctcggccca aggcatcagg ccggcgcgtt cgatgagcaa tatgccgccg ctcggtagcg
     3301 gatatccgcg atggtcagtc tgccggcgcg atcgttacat gcagccgttc gggagcgtcg
     3361 gacagggcca attggcacga gagccgcgac cggtcggtgc gatgcgccga acagtcgagc
     3421 agatcattct cctcctccgc cggcgccggc agaaggtcga tctggcccgg atcgacataa
     3481 acgtggcagg tggcgcaaga gagacatccg ccgcacagag ccacgatctc gtcgatgccc
     3541 gcgctgcgta tcgcttccat caccgagagg tcgggggagg cctcgatgag cctggtgtcg
     3601 ccgtcgcggc tcgtgacgat cagtgccacc atgatcagaa gaccacgacc gatcggatgc
     3661 tttcgccctt gtgcatcagg tcgaagcctt tgttgatgtc ttcgagggtc agcacatggg
     3721 tgatcatcgg atcgatttcg atcttgccgt tcatatacca gtcgacgatc ttgggcacgt
     3781 cggtgcggcc cttggcgccg ccgaacgcgg tgccgcgcca gttgcggccg gtgacgagct
     3841 ggaacggccg ggtgctgatc tccttgcccg cctcggccac gccgatgacg atcgaggtgc
     3901 cccagccccg gtggcacgcc tcgagcgcgg tgcgcatcac ctccgtgttg ccggtgcagt
     3961 cgaaggtgta gtcggcgccg ccgtcggtga gcgcgaggat cgcctcgatg gtggcggcgc
     4021 ggtccttgcc gcggccgtcg atgaagtggg tcatgccgaa gcgccggccc caatcctcgc
     4081 ggtcggggtt gatgtcgacg ccgacgatca tgcccgcacc ggcgagcctg gcgccctgga
     4141 tcacgttgag gccgatgccg cccagcccga acaccacgac cgtgtcgccg acctgcaccc
     4201 tggcggtgtt gaccaccgca cccacgcccg tggtgacgcc gcagccgata tagcagctgg
     4261 tcttgaacgg cgcgtccgcg cggatcttcg cgaccgcgat ctccggcagc accgtgaagt
     4321 tcgagaaggt cgagcagccc atataatgga agatcggctg gcccttgtac gaaaagcgcg
     4381 tggtgccgtc cggcatcagc cccttgccct gggtcgagcg gatcgcggtg cacaggttgg
     4441 tcttgcccga gaggcagctt ttgcactggc ggcattcggg cgtgtagagc gggatcacat
     4501 ggtcgccggc cttgacgctg gtcacccccg ccccgacctc gcgcaccacg ccggcgcctt
     4561 catggcccag gatcgacggg aaaatcccct cgctgtcgaa gccgtccagc gtataggcgt
     4621 cggtgtggca aatgcccgtc gccatgatct cgaccagcac ttcccccgcc ttcggaccct
     4681 ccagatcgac ctcgacaacc tccagcggcg ccttcgccgc aaacgccact gccgcacgtg
     4741 tcttcatgag tccgacctaa ccttcctgga tagcaatcaa tgggcgtcag cagcgctcga
     4801 tcgtcaccgg catccggtgg ggttgccgca ttgtggaacg cacgatccag cggaagtcgt
     4861 cccccagggt gatcctgatc cccggctggg ttatccctcg cagcaccgcc atggatatca
     4921 tgcgggcgac gttgcggccg ggacaaatat ggatgccgcc tccgaaggtc gcgtcggcgc
     4981 gctgcacccg ggtcaactga tattggttgg gattgtcgaa cacgtccgga tcgcgattgc
     5041 ccgcggccca gaccatcgcg atcgccgtgc ccgcggggat ctgaaagccc gcatactcga
     5101 aatcttcgag cgcatagcga tgcgtcacga tgaccggcgc cgacatgcgc aagccttcgg
     5161 catgggccga agcgacgaga ctgggatcgg ccctgaccgc ggccaaggcg tcgggattgc
     5221 gcagcagatg ataggtggtg ttcgcggcgg caagcgcggc ggtgtgaaaa ccatcgatga
     5281 gattggctgc catcgacatg ccgaggcttt cgggcttgcc gggcaagtcg atcgcatcga
     5341 attccgcagc catcgactcg agcagcgcgt tgccgccggc ggccagcgat cgctcgatcg
     5401 ctcctgccac gatttccaga tatctgccgg tcgcaccgtt gatcaggatg gtctcctcgt
     5461 cggtgcgctc gataaagaag aatggcgtca tctcacggac agcctcgacg accagctctt
     5521 cttcctgagg cgtcatcccc agcagcacgc cccagaacct tgaggtcagc cgctccgtga
     5581 actggaagct gaaatcgatc tcgctctggc cggcgacctc gtcgatcagc tcggcaatta
     5641 tgcggtcggc aatcggcgcg aagtcgggca t
//
LOCUS       DASQVK010000406         4364 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_26991, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000406 DASQVK010000000
VERSION     DASQVK010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4364)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4364)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4364
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26991"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..510
                     /locus_tag="VE567_08805"
     CDS             <1..510
                     /locus_tag="VE567_08805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HYZ48977.1"
                     /translation="GTQGLITDWRQMNASLFEALQVERVAMFVVLSIIVLVAVFNILS
                     SLIMLVRAKTRDIAILRTMGATRFGLIKVFVTVGTAIGALGILAGLILGAVFLFYRQA
                     VVNLVQYVTGQNLWDPSIRFLTELPSRTDPVEVTAIVLMALVLSFLATLYPAFKAAST
                     DPVQVLRYE"
     gene            503..1189
                     /locus_tag="VE567_08810"
     CDS             503..1189
                     /locus_tag="VE567_08810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYZ48978.1"
                     /translation="MSEAVKSPVLQTRGLTRSFRQGDVTIEVLRGVDLDVGPSEIVAL
                     LGPSGSGKSTLLQAVGLLEGGFGGSILIAGEEVSKLENGRRTEVRRDRIGFVYQFHHL
                     LPDFNAVENVVLPQLIRDADPAEARERAAALLGTLGLAQRLTHRPSQLSGGEQQRVAV
                     ARALANRPTLVLADEPTGNLDEATADVVFDEFLRLVRGEGSAALVATHNERLAARMDR
                     VLRLHEGRLE"
     gene            1201..1680
                     /locus_tag="VE567_08815"
     CDS             1201..1680
                     /locus_tag="VE567_08815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010216961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HYZ48979.1"
                     /translation="MATVLDYAATKPGGGAEPLSAHAGKVLLIVNVASKCGFTPQYAG
                     LEALYRKYRDRGFEVLGFPCNQFGQQEPGNAEEIASFCSLTYDVTFPVFAKIDVNGPR
                     ADPLYEHLKKAAPGLMGSTSIKWNFTKFLVDRNGKVVRRYAPTSKPEDIERDIQSLL"
     gene            complement(1675..3093)
                     /locus_tag="VE567_08820"
     CDS             complement(1675..3093)
                     /locus_tag="VE567_08820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007676987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYZ48980.1"
                     /translation="MPAVLPAPCDTAEAAQERGAGTSHPALILGATILASSLSFVDGS
                     VVNVALPAIGHSVDASAAALQWVVNAYLLPLSAVLLLGGAAGDRYGRRRMFLCGIAAF
                     AFASILCAIAPGLGWLIAGRILQGASAAVLMPNSLAILGASFVGEERGKAIGTWAAAG
                     AAAGAIGPLLGGALVDAASWRAIFLINLPLAAGALWLGARFVPESHEQDKGGLDWAGA
                     ALGTLGLAGVAWGLTILSGKAKGGGGEWALGAGLVALAVFALVERRRGDQAMMPLGLF
                     ATSSYVGLSILTLLLYAALGGLFVVMPFLLIEAGGYSAVQAGAALLPLPLVIGFASRA
                     MGRLAARIGPRLPLTIGPLVVAGGFALASRIDPAASYWTSVLPPLLIVAIGMAGAVAP
                     LTTAVMNSVDAQHAGTANGANSALARTGSLLATALLGTVLAARGDALVAAVSTASWVA
                     AGMSAAAGIAALLLLQAQRLRS"
     gene            3190..>4364
                     /locus_tag="VE567_08825"
     CDS             3190..>4364
                     /locus_tag="VE567_08825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013040063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HYZ48981.1"
                     /translation="MPHAPFVPLRIFSSFTMLEGALDPKDMVKHAKRHGFPAAALTDR
                     NGLYAAMAFSEAAMKAGIQPIIGTLLCVARPPRDDVPQALDWLAFYAQDETGYRNLCE
                     LVSAAHLDRPVEQDPHIPFEALTGKTDGLLCLTAGAEGALARLFAEEQAAAAIDYVDR
                     LERLFPNRLYIELSRRMNEVEARAERHLIDLAYAHDLPLVATNPCCFGDEHFHAAHDA
                     MLCIADSAYLESDDRRQSSPDAWMKPLPEMQRLFEDLPEALANTIIVAQRCAVAAPKR
                     KPILPSLAGDREGEAAKLREDARAGLELRLAKANVSDEAQRQIYFDRLDFELDVIIQM
                     GFPGYFLIVADFIKWAKAQGIPVGPGRGSGAGSVVAWSLTITDLDPIKLGLLFERFL"
BASE COUNT          730 a         1531 c         1436 g          667 t
ORIGIN      
        1 gggacccagg gcctgatcac cgactggcgg cagatgaacg cttcgctgtt cgaggcgctg
       61 caggtcgagc gcgtggcgat gttcgtcgtg ctctcgatca tcgtgctggt cgcggtgttc
      121 aacattctct cctccctgat catgctggtg cgcgcgaaaa cccgcgacat cgcgatcctg
      181 cgcacgatgg gcgcgacgcg cttcgggctc atcaaggtgt tcgtgacggt cggcaccgcg
      241 atcggcgcgc tgggcatcct cgcggggctg atcctcggcg cggtcttcct cttctatcgt
      301 caggcggtgg tgaatctggt ccaatacgta accggccaga atctgtggga tccctcgatc
      361 cgcttcctga ccgagctgcc gtcccggacg gatccggtgg aggtgacggc gatcgtgctg
      421 atggcgctgg tcctgagctt cctcgccacc ctctatcccg cattcaaggc ggcgagcacc
      481 gatccggtgc aggtgctgcg ctatgagtga ggccgtcaag tcccccgttc tccagacgcg
      541 cggcctcacc cgctcgttca ggcagggcga tgtaacgatc gaagtgctgc gcggcgtcga
      601 tctcgacgtg gggccgagcg agatcgtcgc gctgctgggg ccgagcgggt cgggcaaatc
      661 gacgctgctg caggcggtgg gcctcctcga aggcgggttc ggcggctcta tcctgatcgc
      721 gggcgaggaa gtctcgaagc tcgagaacgg ccggcgcacc gaagtgcggc gcgaccggat
      781 cggcttcgtt taccagttcc accacctgct gcccgatttc aacgcggtcg agaacgtcgt
      841 gctgccgcag ctgatacgcg acgccgatcc ggccgaggca cgcgagcgcg cggcggcgct
      901 gctgggcacg ctcggccttg cccagcggct cacgcaccga ccgagccagc tttcgggcgg
      961 tgagcagcag cgtgtcgccg tcgcccgcgc gctcgccaat cgccccactc tggtgctggc
     1021 ggacgaaccc accggcaatc tcgacgaagc cacggccgat gtggtgttcg acgaattcct
     1081 tcgccttgtc cgcggcgaag gctctgctgc cctggtcgcc acccacaatg agcgcctcgc
     1141 cgcgcgtatg gaccgcgtgc tacgcttgca tgaggggcgg ctggaatagc ggaggcgacc
     1201 atggcgacgg tgctcgatta tgcggcgacg aagccaggcg gcggtgccga gccgctttcc
     1261 gcgcatgccg gcaaagtgct gctgatcgtc aatgtcgcca gcaaatgcgg cttcacgccg
     1321 caatatgccg ggctcgaagc actctaccgc aaatatcggg accggggctt tgaagtgctc
     1381 ggcttcccct gcaaccagtt cggccagcag gagcccggca atgcggagga gatcgcctcc
     1441 ttctgctccc tgacctatga cgtgactttc ccggtcttcg ccaagatcga cgtcaatggc
     1501 ccgcgggccg atccgctcta cgagcatctg aagaaggccg cgcccggcct gatgggctcg
     1561 acctcgatca agtggaattt caccaaattc ctggtcgacc gcaacggcaa ggtcgtgcgc
     1621 cgctacgccc ccacctccaa gcccgaggac atcgaacgcg acatccagtc gctgctatga
     1681 tcgaaggcgc tgcgcctgga gcaggagcag cgcggcgatc cccgccgccg cgctcatgcc
     1741 ggcggcgacc cagcttgcgg tgctcactgc cgcgaccagc gcatccccgc gcgccgccag
     1801 caccgtgccc agcagcgccg tcgcgagcag gctgccggtg cgggcgagcg cgctgttcgc
     1861 gccgttggca gttccggcat gctgagcgtc gacggagttc atgactgcgg tggtgagcgg
     1921 cgcgaccgca ccggccatgc cgattgcaac gatcagcagg ggcggcaaca cgctcgtcca
     1981 atagcttgcc gcagggtcga tgcggctggc gagcgcgaag ccgcccgcga ccacgagagg
     2041 gccgatcgtc agcggcaggc gcgggccgat ccgcgccgcc aaccggccca tggcgcgcga
     2101 cgcgaagccg atcaccagcg gcagcggcag caaggccgcg cctgcctgca cggccgaata
     2161 gccgcccgcc tcgatcagca ggaacggcat gacgacgaac agcccgccga gcgcggcgta
     2221 gagcagcagc gtcaggatcg acaggccaac atagctggac gtggcgaaca ggccgagcgg
     2281 catcatcgcc tggtctccac gccggcgctc gaccagcgcg aacacggcca aagcgacgag
     2341 tccggcgccg agcgcccatt cgccgccgcc gcccttcgcc ttgccggaca atatggtcag
     2401 cccccaggca acgccggcca ggcccaaagt cccgagggca gcgcccgccc agtcgagccc
     2461 gcccttgtcc tgctcgtggc tttcggggac gaagcgcgcg cccagccaca gcgcccccgc
     2521 ggcgagcggc aggttgatca ggaagatcgc gcgccagctc gccgcatcga ccagcgcgcc
     2581 gccgaggagc gggccgatcg cgcccgccgc cgcgccggcc gcggcccagg tgccgatcgc
     2641 cttgccgcgc tcctcgccca cgaacgaagc gccgaggatg gcgagactgt tgggcatcag
     2701 caccgcggcg ctcgcgccct gaagaatgcg gcctgcgatc agccagccta agccgggggc
     2761 gatcgcgcac aggatcgagg caaatgcaaa ggcagcgatt ccgcagagga acatgcgccg
     2821 ccggccatag cggtcgcccg ccgcgccgcc gagcagcagc accgcggaca aaggcagcag
     2881 ataggcgttc acgacccatt gcagcgccgc cgccgaggca tcgacgctat gcccgatcgc
     2941 gggcagcgcg acattcacca cggatccgtc gacgaacgag aggctcgagg cgagaatggt
     3001 tgcgccgagg atcaaagcgg gatggctcgt cccggcgcct cgttcctgcg ctgcctcggc
     3061 agtatcgcag ggagcgggaa ggacggccgg catcgaatcg cctctagctt ttccgcgcgg
     3121 cgcgggaaat cggggataac cggccgcgcg cgccttccct gaatcggcgg caccccccat
     3181 acagggcgca tgccgcatgc gccgttcgtt cccttacgca tcttttcctc gttcacgatg
     3241 ctggaaggcg cgctcgaccc gaaggacatg gtgaagcacg ccaagcggca cggcttccct
     3301 gcggcggcgc tgaccgaccg caatgggctc tacgccgcga tggctttttc cgaagcggcg
     3361 atgaaggcgg gcatccagcc gatcatcggc accctgctct gcgtagcccg gccgccgcgc
     3421 gacgatgtgc cccaggcgct cgactggctc gctttctatg cgcaggacga gaccggctat
     3481 cgcaatctat gcgagctggt ctccgcagcg catctcgacc ggccggtcga gcaggacccg
     3541 catatcccgt tcgaggcgct gacgggcaag accgacggcc ttctctgcct cactgccggc
     3601 gccgaaggcg cgcttgcgcg gctgttcgcc gaggagcagg cggcggccgc catcgactat
     3661 gtcgaccggc tggagcggct gttccccaac cggctctata tcgagctgtc gcggcgcatg
     3721 aacgaagtcg aggcccgggc ggagcggcat ctgatcgatc tcgcttatgc gcacgacctg
     3781 cctctcgtcg cgaccaaccc ctgctgcttc ggcgacgagc atttccacgc cgcgcacgac
     3841 gccatgctgt gcatcgccga cagcgcctat ctggaaagcg acgaccggcg gcaaagctcg
     3901 cccgacgcct ggatgaagcc gctccccgaa atgcagcggc tgttcgagga cctgcccgaa
     3961 gcgcttgcga acaccatcat cgtcgcccag cgctgcgcgg ttgcggcgcc gaagcgcaag
     4021 ccgatcctgc ccagcctcgc cggcgaccgc gaaggcgaag cggcgaagct tcgcgaagac
     4081 gcgcgcgcag ggctcgaact gcggctcgcc aaagcgaacg tcagcgacga ggcccagcgc
     4141 cagatctatt tcgaccggct ggatttcgag ctcgacgtca ttatccagat gggctttccg
     4201 ggctatttcc tgatcgtcgc cgacttcatc aaatgggcaa aggcacaggg cattccggtc
     4261 gggcccggtc gcggatcggg cgccggctcg gtggtcgcct ggtcgctcac cattaccgac
     4321 ctcgacccga tcaagctcgg cctgctgttc gaacgcttcc tcaa
//
LOCUS       DASQVK010000407         4732 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_343339,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000407 DASQVK010000000
VERSION     DASQVK010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4732
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343339"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(112..1119)
                     /locus_tag="VE567_08830"
     CDS             complement(112..1119)
                     /locus_tag="VE567_08830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008602958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HYZ48982.1"
                     /translation="MKLASLNSGRDGRLVVVSRDLHWYADATHIAPTLQAALDDWEDV
                     APHLQLLAIDLEHEAIPLERFHEREAAAPLPRAYQWADGSAYVNHVELVRKARGAEMP
                     ASFWTDPLMYQGASDSFLAPRDPIPLADEAWGCDMEGEVCVVTGDVPMGADRETCLAA
                     IRLIGLVNDVSLRNLIPGELAKGFGFFQSKPASALSPVLVTPDELGGFWRDGKLHLPL
                     LVELNGQPFGCANAGVDMTFDFGTLIGHIAKTRSVGAGSIIGSGTVSNKDADGGPGKP
                     VAEGGRGYSCIAEIRMIETIHTGAPKTPFLRHGDRVRIEMKDHAGHSIFGAIEQEVVA
                     V"
     gene            complement(1116..1481)
                     /locus_tag="VE567_08835"
     CDS             complement(1116..1481)
                     /locus_tag="VE567_08835"
                     /inference="COORDINATES: protein motif:HMM:NF012417.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HYZ48983.1"
                     /translation="MSERIGVDERFASFADHWRPKIVAQLNGQDVRLVKTKGVFPWHS
                     HADAEEMFLCWKGLFRVEFRDRVVTLGPGEMVVVPRGVEHRTASDEEAEVLIFEPSEV
                     INTGDAPASEFTAPSGVTI"
     gene            complement(1478..2749)
                     /gene="hmgA"
                     /locus_tag="VE567_08840"
     CDS             complement(1478..2749)
                     /gene="hmgA"
                     /locus_tag="VE567_08840"
                     /EC_number="1.13.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020819688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004411 - homogentisate 1,2-dioxygenase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homogentisate 1,2-dioxygenase"
                     /protein_id="HYZ48984.1"
                     /translation="MTGFGNHFATEAVPGALPLGRNSPQKPPFGLYAEQLSGTAFTAP
                     RTENRRSWLYRLRPTANHKPYRPYEGAKLVRSGPFDELPPSPNRLRWDPLPMPSEPTD
                     WVDGLVTFAGNGDVAAGAGIGIHLYAANRSMERFFYSADGELLIVPQQGRIVFATELG
                     RLELSPGEIGVVPRGVRFRAEVPDGEARGYVCENYGGPFRLPDLGPIGANGLANPRDF
                     ETPPAWFEDRDGNFEVVQKFQGRLWTCTLDHSPLDVVAWHGNYYPYKYDLWNFNTINT
                     VSFDHPDPSIFTVLTSPSEIHGTANCDFVIFPPRWMVAENTFRPPWFHRNVMSEFMGL
                     IHGAYDAKEGGFAPGGASLHNQMAGHGPDLAAWEKASNAELKPVKIENTMAFMFESRW
                     VIRPTKWAAETELCQLDYDECWAGFPKARIE"
     gene            complement(2811..3857)
                     /gene="hppD"
                     /locus_tag="VE567_08845"
     CDS             complement(2811..3857)
                     /gene="hppD"
                     /locus_tag="VE567_08845"
                     /EC_number="1.13.11.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003868 - 4-hydroxyphenylpyruvate
                     dioxygenase activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylpyruvate dioxygenase"
                     /protein_id="HYZ48985.1"
                     /translation="MMSAENPLGLNGFEFVEFTSPDPDAMARQFEQLGFVASHQHPRK
                     NITRYKQGGINLMLNRDDIGRVAKFRAEHGPSASAMAFRVADPAKALEWALAHGAKAT
                     EEDDTVIEGIGGSYLYFIKDGDDLYAEWTEIPGWREEEATNNVGLETLDHLTHNVRRG
                     QMRVWSEFYKTLFNFEEQKYFDIKGQATGLFSQAMIAPDKAIRIPLNESQDDKSQIEE
                     FIREYHGEGIQHLALTTDDIYDTVERLRARGVRLQDTIETYYELVDKRVPGHGEDLER
                     LKKNRILIDGNVGEEGILLQIFTENMFGPIFFEIIQRKGNEGFGNGNFQALFESIELD
                     QIRRGVIKVDEPAE"
     gene            complement(3904..4338)
                     /locus_tag="VE567_08850"
     CDS             complement(3904..4338)
                     /locus_tag="VE567_08850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HYZ48986.1"
                     /translation="MLRLDNFLPYQLSVASNAVSSAIARTYESLFGLRVPEWRLIAVL
                     AEQEGLTQQALVARTEMDKMTVSRAAQALVNRGIVTRVRHGADKRSHMLALSEDGRAL
                     YAQIAPKALELEARLLAELGERDVAQLKKTLAKLKAASHALR"
     gene            complement(4393..>4732)
                     /locus_tag="VE567_08855"
     CDS             complement(4393..>4732)
                     /locus_tag="VE567_08855"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYZ48987.1"
                     /translation="ANADEADAILDDALVDVITLDVEMPGRNGLDYLQELRATRSTPV
                     IMLSSHTARGEDIRAQALLFGAAGCFNKANAVREKQRLIQLVKDAAHREARLDREDSA
                     AVAAMKAAAE"
BASE COUNT          812 a         1519 c         1535 g          866 t
ORIGIN      
        1 cgctccattg ccgtcccgct tgcgagacgc gctaggggtg ggcaagcctg aaatgctgat
       61 gaggtgacga aagtcccacc ccggcccctc ccgcgagcgg gaggggcggt atcacaccgc
      121 caccacttcc tgttcgatcg caccgaagat gctgtggccg gcatggtcct tcatctcgat
      181 ccgcacccgg tcgccatggc gcaggaaggg cgtcttgggc gcgccggtgt ggatcgtctc
      241 gatcatgcgg atttcggcga tgcagctata gccgcgcccg ccttcggcga ccggcttgcc
      301 cgggccgccg tccgcatcct tgttggagac ggtgccggag ccgatgatcg agcccgcgcc
      361 gacactgcgc gtcttggcga tatggccgat cagcgtgccg aaatcgaacg tcatgtcgac
      421 gcccgcattg gcgcagccaa agggctggcc gttgagttcg acgagcaaag gcaaatgcag
      481 cttgccgtcg cgccagaagc cgcccagctc gtccggcgtt accagcaccg gcgacagcgc
      541 cgaggcaggc ttggactgga agaagccgaa ccccttggcg agctcgccgg ggatcaggtt
      601 gcgcaaggac acgtcgttga cgaggccgat caggcggatc gcggcgaggc aagtctcccg
      661 gtcggcgccc atcggcacgt cgccggtgac gacgcagacc tcgccttcca tgtcgcagcc
      721 ccaggcctcg tcggcgagcg ggatcgggtc gcggggcgca agaaagctgt cggaggcgcc
      781 ctgatacatt agcgggtcgg tccagaagct ggccggcatt tcggcgccgc gtgcctttcg
      841 caccagctcg acatggttca cataagccga gccgtccgcc cattgatagg cgcgggggag
      901 gggggctgcc gcctcgcgtt cgtgaaagcg ctcaagcggg atcgcttcat gctcaagatc
      961 gatggcgagc agttggagat gaggggcgac atcctcccaa tcgtcgagcg cggcctgcaa
     1021 ggtcggcgcg atgtgagtgg cgtctgcata ccaatggaga tcgcgcgaca cgacgaccag
     1081 acggccgtcg cgtccggagt tcaggctcgc aagtttcaaa tcgtcactcc agatggcgcg
     1141 gtgaactcgg acgccggcgc gtcgcccgta ttgatcacct cggagggttc gaagatcagc
     1201 acttccgctt cttcgtcgct tgcggtccgg tgttcaaccc cgcgcggcac gaccaccatc
     1261 tcgcccgggc caagcgtcac cacccggtcg cggaactcga cgcggaacag gcccttccag
     1321 cacaggaaca tttcctcggc gtcggcatgc gaatgccagg gaaagacgcc cttggtcttc
     1381 accagccgca catcctggcc gttgagctgc gcgacgatct tgggccgcca atggtccgcg
     1441 aagcttgcga atctctcgtc gaccccgatc cgctcgctca ttcgatccgc gcctttggga
     1501 agcctgccca gcattcgtca tagtcgagct ggcacagctc tgtctcagct gcccatttgg
     1561 tcgggcggat cacccagcgg ctttcgaaca tgaaggccat ggtgttctcg atcttgaccg
     1621 gcttcaactc ggcattgctg gccttttccc acgcggccag gtccggccca tgccccgcca
     1681 tctggttgtg gagcgaagcg ccgccgggcg cgaacccgcc ttccttcgca tcataggcgc
     1741 cgtggatgag ccccatgaac tcgctcatca cattgcgatg gaaccagggt gggcgaaacg
     1801 tattctcggc gaccatccag cgcggcggga agatcacgaa atcgcagttg gcggtgccgt
     1861 ggatttcgct ggggctcgtg agcaccgtga agatcgacgg atcgggatgg tcgaagctca
     1921 cggtgttgat ggtgttgaag ttccagaggt cgtacttgta cggatagtag ttgccgtgcc
     1981 acgcgaccac atcgagcggg gaatggtcga gcgtgcaggt ccagagccgg ccctggaatt
     2041 tctgcacgac ttcgaaattg ccgtcgcggt cctcgaacca ggcggggggc gtctcgaaat
     2101 cgcgcggatt ggcaaggcca ttggcaccga tcggcccgag atcgggcagg cggaacgggc
     2161 cgccgtaatt ttcgcagaca tagccgcgcg cctcgccatc cggcacctcg gcgcggaagc
     2221 gcacgccacg cgggaccacc ccgatctcgc ccggagaaag ctccagccgg cccagctccg
     2281 tcgcgaagac gatgcgcccc tgctgcggga cgatcagcag ctcgccatcg gccgaataga
     2341 agaagcgctc catcgagcgg ttcgcggcgt agaggtgaat gccgatcccc gcgccggccg
     2401 cgacatcgcc attgccggca aaagtgacga gcccgtcgac ccagtcggtc ggctcggacg
     2461 gcatgggcag agggtcccag cgcaggcgat tggggctggg cggcagctcg tcgaacgggc
     2521 cggaacgcac cagcttcgcc ccctcatagg gccggtaagg cttgtggttc gccgtcgggc
     2581 gcaggcgata gagccagctc cgcctgttct ccgttctggg cgcggtgaag gccgttcccg
     2641 acagctgctc ggcataaagc ccaaagggcg gtttttgcgg actgttccgc ccgaggggca
     2701 gcgcgcccgg cacagcctcg gtcgcgaaat gattgccgaa gccggtcatc gggccggact
     2761 gggtggcgac aatagggcgc tgcagattca taatagcggg tcctgacgtg ttactccgcc
     2821 ggctcgtcca ccttgatcac gccgcggcgg atctggtcga gctcgatgga ttcgaacaga
     2881 gcctggaaat tgccgttgcc gaagccttca ttacccttgc gctggatgat ctcgaagaag
     2941 atcgggccga acatattctc ggtgaaaatc tggagcagga tgccttcctc gccgacattg
     3001 ccgtcgatca agatgcggtt cttcttcagc cgctccagat cctcgccatg gccgggcacg
     3061 cgcttgtcga ccagttcgta ataggtctcg atcgtgtcct gcaggcggac gccgcgcgcg
     3121 cgcagccgct cgaccgtatc gtagatatcg tcggtcgtga gcgcgaggtg ctgaatgccc
     3181 tcgccatgat attcgcggat gaactcctcg atctggctct tgtcgtcctg gctttcgttg
     3241 agcgggatgc ggatcgcctt gtcgggcgcg atcatcgcct ggctgaacag gccggtcgcc
     3301 tggcccttga tgtcgaaata tttctgctcc tcgaaattga agagcgtctt gtagaactcc
     3361 gaccagaccc gcatctggcc gcgccgcaca ttgtgcgtga ggtggtcgag cgtctcgaga
     3421 cccacattgt tcgtggcctc ctcctcgcgc cagcccggga tttccgtcca ttccgcataa
     3481 aggtcgtcgc cgtccttgat gaaatagaga taggacccgc caatcccctc gatgacggta
     3541 tcgtcctctt cagtggcctt ggcgccgtgc gcgagcgccc attcgagcgc cttggccgga
     3601 tcggcgacgc ggaacgccat cgcgctggcc gaggggccat gttcggcacg aaacttggcg
     3661 acccgaccga tgtcgtcccg gttgagcatc aggttgatgc cgccctgctt gtagcgagtg
     3721 atgttcttgc gcggatgctg atgcgaggcg acgaagccca attgctcgaa ctgccgcgcc
     3781 atcgcgtcgg gatcgggcga ggtgaactcg acgaactcga agccattcag gcccaacggg
     3841 ttttcggcgc tcatcattct gctcctgagt cgggggagat cagatagtaa ccaccgttac
     3901 taatcagcgc aacgcgtgac tcgcggcctt cagcttggcg agcgtcttct tgagctgggc
     3961 gacgtcacgc tcgccaagct cggccagcag ccgcgcttcg agctccaacg ccttgggagc
     4021 gatctgggca tacagggcgc ggccgtcctc gctaagcgcg agcatatggc tgcgcttgtc
     4081 ggcgccgtgg cggacgcggg tgacgatgcc gcgattcacc agcgcctggg ccgcgcggct
     4141 gacggtcatc ttgtccatct cggtgcgcgc gaccagtgct tgctgggtaa gcccctcctg
     4201 ctccgccagg acggcgatca gccgccattc gggcacgcgc agcccgaaca acgactcata
     4261 ggtccgcgcg atcgcgctgc tgaccgcatt ggacgcgacc gaaagctgat aagggaggaa
     4321 attatcgagg cgcagcattg cggccgttat ggaccgtcag cccgacgagg ggaacaccgg
     4381 gcgaagcggc agctactcgg ctgccgcctt catggccgcg actgccgcgc tgtcctcccg
     4441 gtccagccgc gcttcgcggt gagcggcatc cttgaccagc tggatcagcc gctgcttctc
     4501 gcgcactgca ttcgccttgt tgaagcagcc ggcggcgccg aacagcagcg cttgcgcacg
     4561 aatgtcttcg ccgcgcgcgg tatggctgga gagcatgatg accggcgtgg accgcgtggc
     4621 gcgcagttcc tgcagatagt cgaggccgtt gcggccgggc atttccacgt cgagggtgat
     4681 gacgtcgacc agcgcgtcat ccagaatcgc atcggcctcg tcggcattcg cg
//
LOCUS       DASQVK010000408         2153 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_279808,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000408 DASQVK010000000
VERSION     DASQVK010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2153)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2153
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279808"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..702)
                     /locus_tag="VE567_08860"
     CDS             complement(<1..702)
                     /locus_tag="VE567_08860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011950914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HYZ48988.1"
                     /translation="MSPGVSILEAVIGAEAEGWRLDRALASALPALSRERIKALISAG
                     QVRRGDGALPRDPAVKARAGESYAVEVPAPRPAHNEAQDLGLKVVYEDEHLIVIDKPA
                     GMVVHPAAGNPDGTLVNALLHHCAGRLSGIGGVARPGIVHRIDKDTSGLLVAAKTDRA
                     HEGLAKQFAAHSIDRRYKAIVAGSPKAEGTVDANLARSDANRKKVAITGEGRGKRAVT
                     HWRLERRLRDSALVEC"
     gene            723..1112
                     /locus_tag="VE567_08865"
     CDS             723..1112
                     /locus_tag="VE567_08865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006834618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M67 family metallopeptidase"
                     /protein_id="HYZ48989.1"
                     /translation="MKTEISRTVLDAIQSHAATEPAREVCGLLFGGGGRIDAATPAEN
                     VAEEPGRRFEIDPAALIAAMRAERAGGPKLLGYYHSHPNGPPEPSATDRAFAATDGRL
                     WLIIARGEIAAWKAGEGGFEPVELVSD"
     gene            1167..1811
                     /locus_tag="VE567_08870"
     CDS             1167..1811
                     /locus_tag="VE567_08870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase family protein"
                     /protein_id="HYZ48990.1"
                     /translation="MTTPAIEFASLLCSRLCHDLLSPVGALNNGLELLADEHDPEMRA
                     RCLDLLNESARASANKLKFFRLAFGAAGGFGDQVDAREAKAAIEGMFGESGRIEIGWM
                     VDSPTLGKRAIKVLLNLALIAGDALVRGGRLDVGAEHTAQGVEIVVRAEGPRLVLDAE
                     LRRALEGHMSEAEVTPRAAAAWLVAQLVAEARGSIQVSSPEDPFVMFGAILRDG"
     gene            1869..>2153
                     /locus_tag="VE567_08875"
     CDS             1869..>2153
                     /locus_tag="VE567_08875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010217428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HYZ48991.1"
                     /translation="MDDLLAEFLAETRETLEALSGEIIAWEGDPSDRARLDAIFRFVH
                     TVKGSCGFLELPRFEKLSHAAEDALAAVRAGTRTPDASLVNAVLAIIDRIG"
BASE COUNT          346 a          707 c          741 g          359 t
ORIGIN      
        1 gcattcgacc agtgccgagt cccgtaagcg gcgctcgagt cgccagtgcg tcaccgctcg
       61 cttgccccgg ccttcgcccg tgatcgcgac cttcttccgg ttcgcgtcgg agcgggcaag
      121 attggcgtcg accgtgcctt cggccttggg tgaccctgcg acgatggcct tgtagcgccg
      181 gtcgatgctg tgcgccgcga attgcttcgc cagcccctcg tgcgcccggt cggtcttcgc
      241 ggcgaccagc agccccgagg tatccttgtc gatccggtgc acgatgccgg gccgggccac
      301 cccgccgatg ccggacagcc gcccggcgca gtggtggagc agtgcgttga cgagcgtgcc
      361 gtctggattg ccggcagccg ggtggacgac catgcccgcg ggcttgtcga tcacgatcag
      421 atgctcgtct tcgtaaacga cctttagccc cagatcctgc gcttcgttgt gcgccggccg
      481 tggagcaggg acttcgacgg cgtagctttc gcccgcgcgc gccttgaccg cggggtcgcg
      541 gggaagcgcg ccgtcgccgc gccggacctg gccggccgaa atcaaggcct tgatgcgctc
      601 gcgcgacaag gccggcagtg cggacgcaag cgcgcgatcg agccgccagc cttccgcttc
      661 ggccccaatc actgcttcga gaatggaaac ccccgggctc atcggttaga ggcaagatgg
      721 gcatgaagac cgaaatttca aggaccgttc tggacgcgat ccaatcgcac gccgccacag
      781 aaccggcccg ggaggtttgc gggctgctgt tcggcggcgg cggccggatc gatgcggcca
      841 cgccggcgga gaatgtcgcc gaggaaccgg ggcgccgctt cgaaatcgac ccggctgccc
      901 tcatcgcagc gatgcgcgcg gagcgggccg gcgggccgaa gctccttggc tattaccact
      961 cccaccctaa cggtccgccc gagccatccg ccactgaccg ggccttcgcc gcaacggacg
     1021 gaaggctatg gctaatcatc gcgcgcgggg aaatcgccgc gtggaaggcg ggggagggcg
     1081 gtttcgagcc ggttgagctt gtttccgact aggtcataac tctccgccct tgctccgcgc
     1141 ggacgggtcg gccagaggag agcaccatga cgacgcccgc catcgaattc gccagcctgc
     1201 tgtgctcgcg cctctgccat gatctgctga gcccggtcgg cgcgctcaac aacgggctcg
     1261 aactgcttgc cgacgagcat gacccggaaa tgcgggcgcg ctgcctcgat ctgttgaacg
     1321 aaagcgcccg cgcttcggcc aacaagctca aattcttccg gctcgcattt ggcgcggcgg
     1381 gcggctttgg cgatcaggtc gatgcgcgcg aggccaaggc ggcgatcgaa ggcatgttcg
     1441 gtgaaagcgg ccggatcgag atcggctgga tggtcgactc gccgacgctc ggcaaacggg
     1501 cgatcaaggt gctgctgaac ctcgcattga tcgccggtga cgcgctggtg cgcggcggcc
     1561 ggctcgacgt cggcgcggag cacacggccc agggcgtcga gatcgtggtc cgcgcggaag
     1621 gaccgcggct ggtgctcgat gcagagctgc gccgggcact tgagggtcac atgagcgaag
     1681 cggaagtgac gccgcgcgcc gcggctgcgt ggctggtcgc acaattggtc gccgaagcgc
     1741 gcgggagcat ccaggtctca tcccccgaag acccgttcgt gatgttcggc gccatcctgc
     1801 gcgacgggta aaccacacct taaccggtcc ggcgacatag gcctgcttac ggaggtgagt
     1861 ggggcccgat ggacgatctg ctggctgaat ttctggctga aacgcgcgaa acgctcgagg
     1921 cactctcggg cgagatcatc gcgtgggaag gcgatccgag cgatcgcgcc cggctcgatg
     1981 cgatcttccg cttcgtccac accgtgaaag gaagctgcgg ctttctcgaa ctgccgcgct
     2041 tcgaaaagct cagccatgct gcggaggatg cgctcgcggc ggttcgggcg ggcacgcgaa
     2101 cacccgatgc aagcctcgtc aatgcggttc ttgcgatcat cgatcggatc ggc
//
LOCUS       DASQVK010000409         6008 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_153386,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000409 DASQVK010000000
VERSION     DASQVK010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6008
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153386"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1679)
                     /gene="tkt"
                     /locus_tag="VE567_08880"
     CDS             complement(<1..1679)
                     /gene="tkt"
                     /locus_tag="VE567_08880"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004802 - transketolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HYZ48992.1"
                     /translation="MTVTHDQLANAIRALAMDAVEAANSGHPGMPMGMADAATVLFAR
                     YLKFDPTDPKWPDRDRFVLSAGHGSMLIYALLYLTGYARPTIDDIRRFRQLGSPCAGH
                     PENFELADVETTTGPLGQGFATAVGMAIAERHLNATYGSELVDHRTWVIAGDGCLMEG
                     INHEAVGLAGHLQLGRLIVLWDDNRITIDGATTLSTSEDIPARYAASGWHVVRCDGHD
                     PADVARAFDEAIADPRPSLVACRTIIGKGAPNKQGTSATHGAALGAAEVTAAREALGW
                     TAEPFVIPEDIAAEWKRVGARGEAEHQAWEARLSSNARKAEFETQQSGRVSSHWLKPY
                     VDGLLASPQKVATRKASEMALEAINAAVPSTIGGSADLTGSNNTKTKALKPLTRDDYS
                     GRYIYYGIREFGMAAAMNGMALHGGVVPYGGTFLVFSDYCRPAIRLSALQGARVVYVM
                     THDSIGLGEDGPTHQPVEHLTSLRLIPNLQVFRPCDVVETAECWALALERMEGPSLLA
                     LTRQNLPQLRDEAAENRCARGAYRLRAAAAPRKVVLVATGSEVELAVAVRDR"
     gene            1820..2008
                     /locus_tag="VE567_08885"
     CDS             1820..2008
                     /locus_tag="VE567_08885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ48993.1"
                     /translation="MTDERLTQAINRLDRALARVEAASDRAAAKTDPETDRLMRRHER
                     LRVRTQEAIAALDRLIGA"
     gene            2037..2360
                     /gene="zapA"
                     /locus_tag="VE567_08890"
     CDS             2037..2360
                     /gene="zapA"
                     /locus_tag="VE567_08890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HYZ48994.1"
                     /translation="MAEVSIEVGGRRYDVTCRDGEEHQLRHLARLVDEKAAQARAAVG
                     AASEARLLLLAALLLADELADLRNGQRNPLPPDTDVALANAVEQLASRVETLAEHLEG
                     RAPAA"
     gene            2372..2527
                     /gene="ssrS"
                     /locus_tag="VE567_08895"
     ncRNA           2372..2527
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="VE567_08895"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(2526..3305)
                     /locus_tag="VE567_08900"
     CDS             complement(2526..3305)
                     /locus_tag="VE567_08900"
                     /inference="COORDINATES: protein motif:HMM:NF016895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HYZ48995.1"
                     /translation="MAIRAAIGAFLLFAGATGPASLDKLRSAAQGGDSEAAFTLGRAY
                     KLGDGAPADLKEAARWLGRAARSGHSRAGDELGLVLFQDGHAAEALPWLKKAAERGDP
                     RAQYALGTIYFAGQVVPLDSIQAKLWMRRAAKAGLPAAAEALAIMEKPLAATPKPERA
                     YEIVTVVPRPAPVKAPPARAASGWQVQMGAFALKGSAQRFWRAVKGEMDPKLKVRFLA
                     DGHLTKLRLAPFATKEAAARFCTAQRKLGRDCLVLAKAGQG"
     gene            complement(3368..4108)
                     /gene="fabG"
                     /locus_tag="VE567_08905"
     CDS             complement(3368..4108)
                     /gene="fabG"
                     /locus_tag="VE567_08905"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004212094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein]
                     reductase (NADPH) activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] reductase"
                     /protein_id="HYZ48996.1"
                     /translation="MFDLTGMTALVTGASGGIGSAIAAALAGQGARVALSGTREEALR
                     EVAGSIGGEPVILPCNLADTAAVDGLVPQAVEALGGTLDILVNNAGVTRDNLILRMKD
                     EEWDQVIRINLEAAFRLCRAAAKPMMKARFGRIVSITSVVGTTGNPGQANYAASKGAL
                     TAMSKALGQELASRGITVNCVAPGFITSPMTDALPEAQKQALTQRIPAGRLGEGADVG
                     AAVAYLASREASYVTGQTLHVNGGMAMI"
     gene            complement(4149..5081)
                     /gene="fabD"
                     /locus_tag="VE567_08910"
     CDS             complement(4149..5081)
                     /gene="fabD"
                     /locus_tag="VE567_08910"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HYZ48997.1"
                     /translation="MRAFIFPGQGSQAVGMGQALAQASSVAREVFQEVDEALGQNLFR
                     LMVEGPADELMLTENAQPAIMANAIATLRVLEREGGVRLADKAEFVAGHSLGEYTALC
                     AAESLGLATTARLLRLRGQAMQAAVPVGQGAMAAILKLDFDAVAQAAEQAAQGEVCAV
                     ANDNSPGQVVLSGHKAAIERASELVKAAGGRAMPLPVSAPFHCPLMQPAAEAMDEALA
                     KIDLRAPLVPVYANVTAAPVADPAEIKRLLVEQVTGTVRWRESVLAMQAAGVHHFVEF
                     GGKVLAPMIKRTTPDAEAVGVVSMEEIEALSTSL"
     gene            complement(5112..>6008)
                     /locus_tag="VE567_08915"
     CDS             complement(5112..>6008)
                     /locus_tag="VE567_08915"
                     /inference="COORDINATES: protein motif:HMM:NF039905.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HYZ48998.1"
                     /translation="LLNASCGRLQRAPDLIEQTRKAFDGANVEAVIEALPADRLLDRA
                     RALLGQGDLDALVIGGGDGSVGSVAALVADSRVALGILPLGTLNHFARDAGIPADLGE
                     AARAIVAGHTMAVDIADVNGRVFVNNSSVGLYPLMVRDREHQQEHLGRSKWPAMARAA
                     GRAVWRFSKWRLRITVEGDTEIVETPILFVGNNRYETSLFALGRRARLDEGQLFFYAV
                     HARSRLGLAKAMLRALFGRLDQARDFVVIGGTEARVEGRRKLLPVATDGEALALETPL
                     HYRVRPKALKLLVPLASAAQPS"
BASE COUNT          962 a         2076 c         2008 g          962 t
ORIGIN      
        1 cggtcgcgca cggcgacggc gagctccact tccgagccgg tcgcgaccag cacgaccttc
       61 cgcggcgcgg cagcggcgcg caggcgatag gcgccgcgcg cacagcggtt ctcggccgcc
      121 tcgtcgcgaa gctgagggag gttctggcgc gtgagcgcga gcaggctcgg cccttccatc
      181 cgctccagcg ccagcgccca gcattccgcg gtctcgacga cgtcgcaggg gcggaacacc
      241 tgcaggttcg ggatcagccg cagcgaggtc agatgctcga ccggctggtg cgtcggcccg
      301 tcctcgccca ggccgatcga atcatgcgtc attacataga ccacgcgcgc gccctgcagc
      361 gccgacaggc ggatggcggg ccggcaataa tcggagaaga cgagaaacgt gccgccatag
      421 ggtacgacac cgccgtgcag cgccatgccg ttcatcgccg cggccatgcc gaactcgcgg
      481 atgccgtaat agatgtagcg gcccgaataa tcgtcccttg tcaaaggctt gagcgccttt
      541 gtcttggtgt tgttggagcc ggtgaggtcg gccgagccgc cgatggtgga cggcacggcg
      601 gcgttgatgg cctccagcgc catttcgctc gccttgcggg tcgcgacctt ttgcgggctg
      661 gcgagcaggc cgtcgacata gggcttgagc caatgcgacg agacgcgccc agattgctgc
      721 gtctcgaact ccgccttgcg cgcgttcgag gatagccgcg cttcccaggc ctggtgctcc
      781 gcctcgccgc gcgcgccgac gcgcttccat tccgcggcga tgtcctccgg gatcacgaac
      841 ggctcggccg tccagccgag cgcctcgcgc gccgccgtca cttcggccgc gccaagcgct
      901 gcgccgtgcg tcgcggaggt gccttgcttg ttcggcgcgc ccttgccgat gatcgtgcgg
      961 caggcgacca acgacggccg cgggtcggca atggcttcgt cgaacgcgcg ggcgacatcg
     1021 gccggatcat ggccgtcgca gcgcacgacg tgccaacccg acgcggcata gcgcgccgga
     1081 atgtcctcgc tggtcgagag cgtcgtcgcg ccgtcgatgg tgatccggtt gtcgtcccac
     1141 agcacgatca ggcggccgag ctgcaaatgg cccgcaagcc cgaccgcttc atggttgatg
     1201 ccttccatca ggcagccgtc gccggcgatc acccaggtcc ggtgatcgac cagttcgctt
     1261 ccataggtcg cgttcaaatg ccgctcggcg atcgccatgc cgacggccgt cgcaaagccc
     1321 tggccgagcg gccctgtcgt ggtctcgacg tcggcaagct cgaaattctc cgggtgccct
     1381 gcgcaggggc tgccgagctg gcggaagcgg cgaatgtcgt cgatcgtcgg ccgcgcatag
     1441 ccggtcaggt agagcagcgc gtagatcagc atcgacccat gcccggccga gagcacgaac
     1501 cggtcgcggt ccggccattt cggatcggtc gggtcgaact tcagatagcg tgcgaacagc
     1561 accgttgcgg catcggccat gcccatcggc atgccgggat ggcccgaatt cgccgcctcg
     1621 accgcgtcca tcgccaaggc gcggatcgcg ttggcgagct ggtcgtgcgt gacagtcatc
     1681 tatggtcccg gtgctgagga tgtcagatac gctgagtcgg gctcaggcgg ccgtgctttg
     1741 cggccttgca acgcacgcgt caaccgcgcg cccgagagag gcgcttgcat atgcacttgg
     1801 acgtggtagt taagattttg tgacagatga gcggctgacc caagcgatca accgcctcga
     1861 tcgggcattg gctcgcgtcg aggcagcatc cgaccgcgcc gccgccaaaa ccgatccgga
     1921 aaccgaccgg cttatgcgcc gccacgaaag gctgcgcgta cgaacgcagg aggcgattgc
     1981 tgcgctcgac cggttgatcg gggcttgaat caaggcacgg ccgcaagggg agacgaatgg
     2041 ccgaagtgtc gatcgaagtg ggcggccgcc gctatgacgt aacgtgccgc gacggcgagg
     2101 agcaccaatt gcgccacctc gcaaggctgg tggacgaaaa ggcggcgcag gcgcgcgccg
     2161 cggtcggcgc cgcgagcgaa gcgcgattgc tgctgctggc ggcattgctg ctcgccgacg
     2221 aactcgccga tctgcgcaac ggccagcgca atccgctgcc gcccgatacc gatgtcgcgc
     2281 tcgccaatgc cgtcgagcaa ttggcatcgc gggtcgaaac gcttgccgag catcttgagg
     2341 gccgcgctcc ggccgcctaa ataacgcgcg acgggtactg cccggtgcga gcctttgaga
     2401 ctatccctga gccgataaga catcctcggg ggctgtccct tggcggatcc tggtccgacc
     2461 taaacggtcc ccacctggcg cttgggcgtc agaggataat ccggccaacg gccatggcgg
     2521 tcccgtcacc cctgccccgc cttggcgagc accagacagt cgcgccccag cttgcgctgg
     2581 gccgtgcaaa agcgcgcggc tgcttccttc gtggcgaaag gcgcgagccg cagcttcgtg
     2641 aggtggccgt cggcgaggaa gcggaccttg agcttcgggt ccatctcccc ttttaccgcg
     2701 cgccagaaac gctgcgcact gcccttgagc gcgaaggcgc ccatttgcac ttgccagccc
     2761 gacgccgcgc gggccggcgg cgccttcact ggggcgggcc gtggcacgac cgtcactatt
     2821 tcataggctc gttccggctt cggcgtcgcc gcgagaggct tctccatgat cgcgagcgct
     2881 tcggcggccg cgggtagccc cgccttggcg gcacggcgca tccatagctt tgcctggatc
     2941 gagtcgagcg ggacgacctg gccagcgaag tagatcgtgc cgagcgcata ttgcgcgcgc
     3001 gggtcgccgc gctcggctgc ctttttgagc cagggcaggg cttcggcggc atggccgtcc
     3061 tgaaacagca ccagcccgag ctcgtcaccg gccctggaat ggccggaccg ggcagcccgt
     3121 ccgagccagc gcgcggcttc cttcaaatcg gcgggagcgc cgtcgccaag cttgtatgcg
     3181 cggccgagcg tgaacgcggc ctcgctgtcg ccgccctgcg ccgccgatct gagcttgtcg
     3241 agggaggcag gcccggttgc gcccgcaaac aagagaaacg caccaatcgc cgcccggatt
     3301 gccattctag gccccgcctg atccgcctct gcccagactg ccgaaagcga ctgccgccag
     3361 caaccgctca aatcatcgcc atgccgccat ttacgtgcag cgtctggccc gtgacatagc
     3421 tcgcttccct gctggcgaga taggcgacgg ccgcgccgac atccgcgcct tcacccagcc
     3481 ggcctgcggg aatgcgctgg gtgagcgcct gcttttgtgc ctcgggcagc gcatcggtca
     3541 tcggcgacgt gatgaagccg ggggcgacgc agttgacggt gatgccgcgg ctcgcgagct
     3601 cctgccccag cgccttggac atggccgtga gtgcgccttt cgaggctgcg taattcgcct
     3661 ggccgggatt gccggtcgtc cccaccaccg acgtgatcga gacgatgcgg ccgaagcgcg
     3721 ctttcatcat cggcttggcg gcggcgcggc agaggcggaa ggctgcttcc agattgatgc
     3781 ggatcacctg gtcccattcc tcatccttca tgcgaagaat gagattgtcg cgggtgacgc
     3841 cggcattgtt gaccaggatg tcgagcgtgc cgccaagggc ctccacggcc tggggcacga
     3901 gaccatccac ggccgcggtg tctgccaggt tgcacggcag gatcaccggc tcgcccccga
     3961 tgctaccggc gacctcgcgc agcgcttcct cgcgcgtccc cgaaagcgcc acccgcgcgc
     4021 cctgccccgc caaagccgcc gcaatcgcgg agccgatccc gccggaggcc ccggtcacaa
     4081 gcgcagtcat ccctgtgagg tcgaacatct aagactcctt gagctggttc acgcgaagcc
     4141 gcttggccct atagcgacgt cgaaagcgct tcgatttctt ccattgaaac cacgcccacc
     4201 gcctcggcgt cgggggtggt gcgtttgatc atgggagcga ggaccttgcc gccgaactcg
     4261 acgaaatggt gcacgccggc cgcttgcatc gcgagcacgc tttcgcgcca gcggacggtg
     4321 cccgtgactt gttcgacgag caggcgcttg atctcggctg ggtcggcgac cggggcggca
     4381 gtcacgttcg catagaccgg caccaaaggc gcgcgcaggt cgattttggc cagcgcttcg
     4441 tccatggcct cggccgccgg ctgcatcagc gggcagtgga acggcgcgga gaccggcagc
     4501 ggcatcgccc gtccacccgc cgccttgacc agctcggacg cgcgctcgat cgccgccttg
     4561 tggcccgaga gcacgacctg gcccggcgaa ttgtcattgg cgacggcgca aacctcgccc
     4621 tgcgccgcct gctccgcggc ctgcgccacc gcatcgaagt cgagcttcag gatggccgcc
     4681 attgcgccct gccccaccgg cacggccgcc tgcatcgcct ggccgcgcag cctgagcagc
     4741 ctggcggtgg tggcgaggcc gagcgattcg gccgcacata gagcggtgta ttcgccaagc
     4801 gagtgacccg cgacgaactc ggccttgtcg gccagccgga cgccgccctc gcgttccaac
     4861 acgcgcaatg tcgcgatcgc gttcgccata atcgcgggct gcgcattttc cgtgagcatc
     4921 agttcgtccg cgggcccctc gaccatcagg cggaatagat tctgccccag cgcctcgtcg
     4981 acttcctgga acacttcgcg ggcgacactg ctggcctgcg ccaacgcctg gcccatgccg
     5041 accgcctggc tgccctggcc gggaaaaatg aatgcgcgca tgatctgccc ctgcaaagag
     5101 aaacgggccg gttaggaagg ctgggccgcc gatgcaagcg gcaccagcag cttcagcgcc
     5161 ttgggccgga cgcggtagtg aagcggggtc tcaagcgcga gcgcttcgcc atcggtcgcg
     5221 accgggagca gctttcggcg gccttcgacc cgcgcttccg tgcccccgat gacgacgaag
     5281 tcgcgtgcct ggtcgagccg gccgaacagc gcgcgaagca ttgccttggc cagtcccagg
     5341 cgagaccgtg cgtggacggc gtagaagaac aattgcccct catcgaggcg cgcgcgccgg
     5401 cccagcgcaa agaggctcgt ttcatagcgg ttgttgccga cgaacaggat cggcgtctcg
     5461 acaatctcgg tgtcgccctc gacggtgatc cgcagccgcc atttggagaa gcgccagacc
     5521 gcccgacccg ccgcgcgcgc catggcgggc catttgctgc ggccgagatg ctcctgctgg
     5581 tgctcgcgat cgcggaccat caacggatag aggccgaccg agctgttgtt gacgaagacg
     5641 cggccgttca catcggcaat gtcgaccgcc atcgtatggc cagcaacgat cgcccgagcc
     5701 gcctcgccga gatcggccgg aatgccggca tcgcgcgcga aatggttgag cgtgccgagc
     5761 ggcaggatgc cgagcgcaac gcggctgtcg gcgaccaggg ccgccaccga gccgaccgac
     5821 ccgtcgccgc cgccgatcac cagcgcgtcg agatcgccct gccccagcag ggcccgtgcg
     5881 cggtcgagga gccggtcggc gggaagcgct tcgatgaccg cttcgacgtt cgcgccgtcg
     5941 aaagccttgc gcgtctgttc gatcaggtca ggtgcgcgct gcaacctccc gcacgaggcg
     6001 ttgagaag
//
LOCUS       DASQVK010000410         3239 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_248018,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000410 DASQVK010000000
VERSION     DASQVK010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3239
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248018"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..364)
                     /gene="smpB"
                     /locus_tag="VE567_08920"
     CDS             complement(<1..364)
                     /gene="smpB"
                     /locus_tag="VE567_08920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008065369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HYZ48999.1"
                     /translation="MARPRPQEFDKKKIVAENRRARFDYFIDDVFEAGIVLTGTEVKS
                     LRFGEGSIAESYAEVKNDEVWLVNSNIPEFSHGNRFNHEPKRPRKLLLKERQISKMHG
                     AVAREGMTLVPLSIYFNGR"
     gene            complement(366..1241)
                     /gene="dapA"
                     /locus_tag="VE567_08925"
     CDS             complement(366..1241)
                     /gene="dapA"
                     /locus_tag="VE567_08925"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014075842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HYZ49000.1"
                     /translation="MFSGSIPALVTPFRDGLVDEAAFTSFVDWQVREGSHGLVPCGTT
                     GESATLSYDEHYRVIDLCIEAAAGRVPVIAGCGSNDTATAKRHMARAKAAGAAAALVV
                     MPYYNRPNQDGLYAHFAVLAESCDLPIIAYNVPGRTVTDMSVETMARLAEIPTIVGVK
                     DATGNVARVTAQRLACGADFAQLSGNDDMALGFMAMGGVGCISVTANVAPRLCADFQS
                     ACLAGDWTTALELQDRLYPLHAALFSDASPGPTKYALNKLKPELSAELRLPMTPPSEA
                     SRRAVDAALEHAGLI"
     gene            1354..>3239
                     /locus_tag="VE567_08930"
     CDS             1354..>3239
                     /locus_tag="VE567_08930"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HYZ49001.1"
                     /translation="MSTRLLLPIALLLGTAASTVVADPTALIPTQPSSPPAPYSVGDP
                     VVVAIPLWNAMRQTDNLPFDSYASFLVAHPGWPGEQAMRRAAERNLQPGVVAPGRVIA
                     FFDRFPPLTNAGQARYAEALQGVGRRADAVAAARKAWTSGSLTPGDEELVLAEFGASF
                     TPADQDERMDRLLWAGKTSAAARQIALTSPAKRQLFEARLALRTNSPDAQTIADALPA
                     SFQNDAGFIADKAMWLRAASPDAARAWLAQPRQLSGRPAEVERWFELLLSTAKSAAAA
                     GDTRAALQIARLVDETYAPGTNVRERPFGERDDYTSLVWLAGWTSLNGARAADAVGMF
                     ERYANAAKSPQTQAKGHYWAARAAQAAGRAADADRLLELAANHPDQFYGQLALERLGR
                     AIPAPGTEGATTPTPAERVAFNQRELVRAARILGQQGDWQTQSLFIRAIAGSVETDAE
                     LALANELAQGIGRPDLAVMVGRNARLNGASEYVRAGYPQVKMPQGQEAWSTIVHAIAR
                     QESQFDRAAVSRAGARGLMQLMPGTAREQAEKIGLSYDTTALTSDIGYNIQLGSAYFQ
                     RLLTYNGGSYPLAIAAYNAGQGNVNKWIAANGDPRYPGADMVKWIENIPFSETRNYVQ
                     RVLE"
BASE COUNT          553 a         1092 c         1080 g          514 t
ORIGIN      
        1 ccctgccgtt gaaatagatc gaaagcggca ccagcgtcat gccctcgcgt gcgacggcgc
       61 cgtgcatctt ggaaatctgg cgttccttca gcagcagctt gcgcggccgc ttgggctcgt
      121 gattgaagcg gttgccgtgg ctgaactcgg ggatgttcga gttgaccagc cagacttcgt
      181 cgttcttcac ctcggcatag ctttcggcga tcgatccttc cccgaagcgc agcgacttga
      241 cctcggtgcc cgtcagcacg atcccggcct cgaacacgtc gtcgatgaaa tagtcgaagc
      301 gagcgcgccg gttctcggcg acgatcttct tcttgtcgaa ctcctggggg cggggacggg
      361 ccaagtcaga tcaatcccgc atgttccagg gccgcatcga ccgcgcgccg gctcgcctcg
      421 gagggtggcg tcatcggcaa gcgcagctcg gcggagagct ccggcttcag cttgttgagc
      481 gcatatttgg tgggtccggg cgaagcgtcg ctgaacagag ccgcgtggag cggatagagc
      541 cggtcctgca gctcaagcgc cgtcgtccag tcgccggcca ggcaggcgct ctggaaatcg
      601 gcgcagaggc gcggcgcgac attggcggta accgaaatgc accccacccc gcccatcgcc
      661 atgaagccga gcgccatatc gtcattgccc gaaagctgag cgaaatccgc accgcaggcg
      721 aggcgctgcg ccgtcacccg ggcgacattg ccggttgcgt ccttgacgcc gacgatcgtc
      781 ggaatctctg ccagccgggc catggtctcg acgctcatgt cggtgactgt ccggccgggc
      841 acattgtaag caatgatcgg caggtcgcag ctttccgcca gcaccgcgaa atgggcgtag
      901 agcccatcct gattgggccg attgtaatag ggcatcacca ccaaggcagc ggcagcgccg
      961 gcggccttgg cgcgcgccat gtgccgcttg gcggtggccg tatcgttcga tccgcagccc
     1021 gcgatcaccg gcacgcggcc ggcggcggct tcgatgcaca gatcgatcac ccggtaatgt
     1081 tcgtcatagg acaaagtcgc cgattcgccc gtggtgccgc agggcacgag accgtggctg
     1141 ccttcgcgca cttgccagtc gacgaacgag gtgaacgcgg cctcgtcgac caagccgtcg
     1201 cgaaagggag tgaccagggc cggaatcgag ccggaaaaca tgcatttgct ccttcacccg
     1261 aatccagaaa tcgggcatgg tgatcggcca gtgggtggag tgtatatggc cagttcaccg
     1321 ccagataagg atcaggcgcc tagactgtcc agcatgagca cgcgacttct tctgcccata
     1381 gccctgctgc tgggcacggc cgcatccaca gtcgtcgccg atccgaccgc gttgatcccg
     1441 acccaacctt cgtctccgcc cgcgccctat agcgtcgggg acccggtggt cgtggcgatc
     1501 ccgctgtgga atgcgatgcg ccagacggac aatctgccgt tcgacagcta tgcgagtttt
     1561 ctggtcgccc atccgggctg gccgggcgaa caggcgatgc gccgcgcagc cgagcgcaat
     1621 ctgcagccgg gcgtcgtcgc gccgggcagg gtcatcgcgt ttttcgatcg gtttccgccg
     1681 ctgaccaatg cggggcaggc gcgctatgcc gaggcactgc aaggggtcgg gcggcgcgcc
     1741 gacgcggtcg cggccgcgcg caaggcctgg acttcgggct cgctgacgcc cggcgacgaa
     1801 gagctggtgc tcgccgagtt cggcgccagc ttcacgccgg cggaccagga cgagcggatg
     1861 gaccggctgc tttgggccgg caagacgagc gccgcggcgc gccagatcgc gctcacctcg
     1921 ccggccaaac gccaattgtt cgaggcgcgg ctggcgctgc gcaccaattc gcccgacgca
     1981 cagaccatcg ccgacgcgct gcccgcctca ttccagaacg acgccggctt cattgccgac
     2041 aaggcgatgt ggctgcgcgc cgcttcgccc gatgccgcgc gggcatggct tgcgcagccg
     2101 cgccagctga gcggccgccc ggccgaggtc gaacgctggt tcgagctgct gctctccact
     2161 gccaaatcgg ccgcggccgc cggcgatacg cgcgccgcgc tgcagatcgc gcggctggtg
     2221 gacgagacct atgcgcccgg caccaacgtc cgcgaacggc cgttcggcga gcgcgacgat
     2281 tatacgagcc tggtctggct cgccggctgg acgtcgctga acggcgcccg cgcggccgac
     2341 gcggtcggca tgttcgagcg ctacgccaat gccgcgaagt cgccccagac ccaggccaag
     2401 ggccattatt gggccgctcg ggctgcccaa gcggcgggcc gggccgcgga cgccgatcgg
     2461 ctgctggaat tggcggccaa tcatccggac caattttacg gccagctcgc ccttgagcgg
     2521 ctgggccgcg cgattcctgc tccaggcacc gaaggcgcga cgacaccgac gccggccgag
     2581 cgcgtcgcct tcaatcagcg cgagctcgtg cgcgccgcgc gcatcctggg ccagcagggc
     2641 gattggcaga cgcagagcct gttcattcga gccatcgccg gcagcgtcga gacggatgcc
     2701 gagctcgcgc tcgcgaacga acttgcccaa ggcatcggcc ggcccgacct ggcggtgatg
     2761 gtcggccgca atgcgcggtt gaacggcgcc agcgaatatg tccgcgcggg ctatccgcag
     2821 gtgaaaatgc cgcaggggca ggaagcctgg agcacgatcg tccacgcgat cgctcgccag
     2881 gaaagccagt tcgatcgcgc cgcggtgagt cgggcgggcg cacgggggct gatgcagctg
     2941 atgcccggca ccgcgcgcga gcaggcggag aagatcgggc tcagctacga caccacggcg
     3001 ctcaccagcg acatcggcta caatatccag ctcggatcgg cctatttcca gcgcctgctc
     3061 acctataacg gaggcagcta tccgctcgcg atcgccgcct acaatgcggg ccagggcaat
     3121 gtgaacaagt ggatcgccgc caatggcgac ccgcgctatc ccggcgccga catggtcaag
     3181 tggatcgaga acatcccctt ctccgagacc cgcaattacg ttcagcgcgt gctggagaa
//
LOCUS       DASQVK010000411         4355 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_27265, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000411 DASQVK010000000
VERSION     DASQVK010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4355
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27265"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..661
                     /locus_tag="VE567_08935"
     CDS             <1..661
                     /locus_tag="VE567_08935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HYZ49002.1"
                     /translation="IQPIVVRPYRGGYQIVAGERRWRAAQRARLHQVPVIVRDFDEAE
                     TLELALVENIQREDLNAIEEAEAYRKLIDRFGHSQEALGRIVHKSRSHIANLLRLLDL
                     PAPVQAMLGAGRLSMGHARALITAPDPEALANQVVERGLSVRETERLAQTARPAAARP
                     AHAPRDGDADIAALERQLGDLLGLRVKIAYAKGAGSVTLGFSSLDQLDLICQRLTGER
                     I"
     gene            complement(658..1668)
                     /locus_tag="VE567_08940"
     CDS             complement(658..1668)
                     /locus_tag="VE567_08940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HYZ49003.1"
                     /translation="MKANRAEIERALDRPSETIRCFLLYGPDEAGSRALADRLAKAMG
                     AEAERIDFEGAALAKDPALLADEAASNSLFGGTRWIRVRASGDEAIEAVEALLAAPQA
                     GNPVAIIAGALKPASKLLKLALASPAMLACASYAPEGREADQLVASMGAALGLRIGPD
                     IARLLFDAAAGDRAVVAQEIEKIAAFLDAGEGPPREVDAGVLDAIGAGQGEGSAGVLV
                     DSALTGNARAAVEELKQLSEAGEDGIPLVRAGFRRLLQLAALRAEADQSGMAAATKAV
                     FFKEKELVAAELRRWSSPELAMLVDRLTAAQAKLLESGGAGAVVASQELLTIARAAAR
                     GR"
     gene            complement(1665..2147)
                     /gene="lptE"
                     /locus_tag="VE567_08945"
     CDS             complement(1665..2147)
                     /gene="lptE"
                     /locus_tag="VE567_08945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0043165 - Gram-negative-bacterium-type cell
                     outer membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HYZ49004.1"
                     /translation="MIRRLAPLLLLAGCGLQPLYSGGSGGGVAQALAGVEVAPVQGKN
                     GWLVVNALKDRIAAEPGAAARYRLEIELDDKIEGFGIRRDDAITRERRTLRARYRLTD
                     RGTGAVLLDATAGSDAGIDAVSSEYATIAAENTALERLAGEVADQIVARIALYAKRTQ
                     "
     gene            complement(2144..>4355)
                     /gene="leuS"
                     /locus_tag="VE567_08950"
     CDS             complement(2144..>4355)
                     /gene="leuS"
                     /locus_tag="VE567_08950"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HYZ49005.1"
                     /translation="WTWSNIDTMRGQLKRLGYAFDWSREVATCDPAYYGHEQALFIDL
                     FEAGLVYRKQSEVNWDPVDMTVLANEQVIDGRGWRSGALVEKRKLSQWFLKITDFAEE
                     LLDGLKSLDQWPDKVRLMQENWIGKSQGLQFRFNLSDGGEVEVFTTRPDTIFGSSFVA
                     VAAEHPLAARIAAANPDAAAFIEECRAGGTTAAELETAEKKGFDTGLSAFHPFDPEWR
                     LPVYIANFVLMDYGTGAVFGVPAHDQRDLDFARKYGLPVRRVVSDGEHSDPVFEGDEA
                     YTGPGRLVNSRFLDGLDVDAAKRAVIARAEAEGWGRGTTVWRLRDWGVSRQRYWGTPI
                     PIIHCEACGAVPVPRDQLPVVLPEDVTFDIPGNPLDRHPSWKHVDCPKCGKPARRETD
                     TLDTFVDSSWYFIRFASQPADKPFEKRVAESWLPVGQYIGGVEHAILHLLYARFWTRA
                     LNRLGKIGVKEPFTGLFTQGMVTHETYQAGDGSWLSPDEVTKEGDDWIHIDSGKPITV
                     GRVEKMSKSKKNVVDPAPILDSYGADAVRWFMLSDSPPERDLAWSEAGIEGAWRFVQR
                     VWRLVQSADAADGSDPALARRRHKTAAGVAEDIEALAFNKAVAKLYEFVGAIEKASPS
                     ADRAEAVRALVRLVAPMIPHLAEEGWAALGQQGLVADAEWPAFDPAMLVEDEVTIAVQ
                     VNGKLRDTLTVPRGESREALEAKALAAPNVVRILDGAAPRKVIVVPDRLVNLVA"
BASE COUNT          671 a         1581 c         1398 g          705 t
ORIGIN      
        1 gatccagccg atcgtcgtgc ggccttatcg cggcggctat cagatcgttg ccggcgagcg
       61 gcgctggcgt gccgcgcagc gggcccggct gcatcaggtc ccggtcatcg tccgcgattt
      121 cgacgaagcg gagacgctgg aactcgcact cgtcgaaaat atccagcgcg aggatctgaa
      181 cgcgattgag gaagcggagg cctatcgcaa gctgatcgac cggttcggcc acagccagga
      241 agcgctcggc cggatcgttc acaaatcgcg cagccacatc gccaacctgc tgagattgct
      301 cgatcttcct gcgcccgtgc aagccatgct cggggctgga aggctcagca tggggcatgc
      361 gcgcgcgctt atcaccgcgc ccgatccgga agcgctggcc aatcaggtgg tcgagcgcgg
      421 cctgtcggtg cgtgagaccg agcggctcgc ccagaccgcc cggcccgccg ccgctcgccc
      481 ggcgcatgcg cctcgggacg gcgacgccga cattgccgcc ctcgaacgcc agctcggcga
      541 cctgctcggc ctccgcgtga aaatcgccta tgccaagggt gccggctcgg tcacgctcgg
      601 cttctctagc ctcgaccagc tcgacctgat ctgccagcgc ctcaccggcg agcgaatcta
      661 gcgcccccgc gccgcggccc gcgcgatcgt cagcagctcc tgcgatgcga ccaccgcgcc
      721 cgcgccgccg ctttccagca attttgcctg ggcggcggtg aggcggtcga ccagcatcgc
      781 cagctcgggc gagctccagc ggcgcagctc ggccgcaacc agttccttct ccttgaagaa
      841 caccgccttg gtcgccgccg ccatgccact ctggtccgcc tcggctcgca aagctgccag
      901 ctgaagcagc cggcggaagc ccgcgcggac cagcggaatg ccgtcctcgc ccgcctcgct
      961 caattgcttg agttcctcga ccgcagccct ggcgttcccg gtcagcgcgg agtcgaccag
     1021 cacgccggcg ctgccctcgc cctggccggc gccgatcgca tcgagcacgc cggcgtcgac
     1081 ctcgcggggc ggtccctcgc ccgcatccag aaaagccgca atcttttcaa tctcttgcgc
     1141 caccaccgcg cggtcgcccg cggcggcgtc gaacagcagc cgggcaatgt ccggcccgat
     1201 cctcagcccc agcgccgctc ccatcgacgc aaccaattgg tcggcctcgc gcccctccgg
     1261 cgcatagctg gcgcacgcga gcatcgccgg cgaggccagc gccagcttca gcagcttcga
     1321 cgccggcttg agcgcgcccg caatgatcgc gaccggattg cccgcctggg gtgctgcgag
     1381 cagcgcctcg acggcctcga tcgcttcgtc gccgctcgcc cgcacgcgga tccagcgcgt
     1441 gcctccgaac agggaattcg aggctgcctc gtcggcaagc agagcgggat ccttcgccag
     1501 cgccgcgcct tcgaaatcga ttcgctccgc ctccgcgccc atcgccttgg cgaggcggtc
     1561 ggcgagtgcg cgcgagcccg cttcgtcggg tccgtaaagc aggaagcagc ggatcgtctc
     1621 actcggccgg tcgagcgcgc gctcgatctc ggcgcggttc gctttcactg ggtccgcttg
     1681 gcgtagagcg cgatgcgcgc gacgatctgg tcggcgactt cgcccgcgag ccgttccagc
     1741 gccgtattct cggccgcgat cgtcgcatat tcggagctga ccgcatcgat gccggcgtcc
     1801 gatccagcag tcgcgtcgag cagcacggcg ccggtgccgc ggtcggtcag gcgatagcgc
     1861 gcccgcagcg tccgccgctc gcgcgtgatc gcgtcgtcgc gccggatgcc gaaaccctcg
     1921 atcttgtcgt ccaactcgat ttcgagccgg tagcgggccg cggcgcctgg ctcggcggcg
     1981 atccggtcct tgagcgcatt gacgaccagc cagccattct tgccctggac tggcgccact
     2041 tccaccccgg caagcgcctg cgcaacgccc ccgccggagc cgccggaata gagcggctgg
     2101 agaccgcagc cggcaagcag caggagggga gcgaggcggc ggatcatgcg acgaggttga
     2161 ccagccggtc gggcacgacg atcactttcc tgggcgccgc gccgtcgaga atgcgcacga
     2221 cattgggtgc ggcgagcgcc tttgcttcca gcgcctcgcg ggattcgccg cgcggcacgg
     2281 taagcgtatc ccgcagcttg ccgttcacct gcaccgcgat cgtgacttcg tcctccacaa
     2341 gcatggccgg gtcgaaggcg ggccattcgg cgtcggcaac cagaccctgc tgccccaacg
     2401 ccgcccagcc ttcctcggcc agatgcggga tcatcggcgc gaccagccga accagggcgc
     2461 ggaccgcttc ggcgcggtcg gccgagggcg aagccttctc gattgcgccc acgaattcgt
     2521 acagcttggc gaccgccttg ttgaaggcca gcgcctcgat gtcctcggcg acgccggcgg
     2581 ccgtcttgtg ccgcctgcgt gcgagcgcgg ggtcggagcc gtccgccgcg tccgcgctct
     2641 gcacgagccg ccacacgcgc tggacgaagc gccacgcgcc ttcgatgccg gcctcggacc
     2701 aggcgaggtc gcgctcgggc ggcgagtccg aaagcatgaa ccagcgcacc gcgtcggcgc
     2761 catagctgtc gagaatgggg gcggggtcca ccacattctt cttggacttg gacattttct
     2821 cgacacggcc gaccgtgatt ggcttgccgc tatcgatgtg aatccagtcg tcgccctctt
     2881 tggtgacttc gtcggggctc agccagctgc cgtcgcccgc ctgataggtc tcgtgcgtca
     2941 ccatcccttg agtgaagagg ccggtaaacg gctccttgac gccaatcttg ccgaggcgat
     3001 tcagcgcccg cgtccagaac cgcgcataca gaagatgcag gatcgcatgc tcgacgccgc
     3061 cgatatattg gccgaccggc aaccagctct cggcgacgcg cttctcgaac ggcttgtccg
     3121 ccggctggct cgcgaagcgg atgaagtacc agctcgaatc gacgaaggtg tcgagcgtgt
     3181 ccgtctcgcg ccgtgccggc ttcccgcatt tcgggcaatc gacatgcttc cagctcggat
     3241 gccggtcgag cggattgccg gggatatcga aagtgacgtc ttcgggcagc acgacgggca
     3301 gctggtcgcg cggcaccggc accgcgccgc acgcctcgca atggatgatg gggatcggcg
     3361 tgccccaata acgctgccgc gacacgcccc agtcgcgcag ccgccacacg gtcgtgcccc
     3421 gtccccagcc ctcggcctcg gcgcgtgcga tgacggcgcg cttggccgcg tcgacatcga
     3481 gcccgtccag gaagcgcgag ttcacaagtc gacccggccc ggtataggcc tcgtcgccct
     3541 cgaacaccgg atcgctatgc tcgccatcgg agacgacgcg gcgcaccggc aggccgtatt
     3601 tccgcgcgaa atccaggtct cgctggtcgt gcgccggcac gccgaatacc gcgccggtgc
     3661 catagtccat cagcacgaag ttcgcgatgt aaacgggcag ccgccactcc ggatcgaacg
     3721 ggtggaacgc gctcagcccg gtatcgaagc ctttcttctc cgctgtctcc agctcggccg
     3781 ccgtggtgcc gcccgcccgg cattcctcga tgaaggccgc ggcgtcagga ttggccgcgg
     3841 cgattcgcgc ggcgagcgga tgctcggccg ccacggccac gaagctcgat ccgaagatcg
     3901 tgtcgggccg ggtggtgaag acctctacct cgccgccatc cgagagattg aaacggaact
     3961 gcagcccctg gctcttgccg atccaattct cctgcatcag ccggaccttg tcgggccatt
     4021 ggtcaaggct cttcagcccg tccagcagct cctcggcgaa gtcggtgatc ttcaggaacc
     4081 attggctgag cttgcgcttc tcgacgagtg cgccggaacg ccagccgcgc ccgtcgatca
     4141 cttgctcgtt cgcgagcacg gtcatgtcga ccgggtccca attgacctcg ctctgcttgc
     4201 ggtagaccag ccccgcttcg aacaggtcga tgaacagggc ctgctcgtga ccgtaataag
     4261 ccgggtcgca cgtcgcgacc tcgcggctcc agtcgaaggc gtaaccgagc cgcttcaact
     4321 ggccgcgcat cgtgtcgatg ttcgaccagg tccac
//
LOCUS       DASQVK010000412         3362 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_248085,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000412 DASQVK010000000
VERSION     DASQVK010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3362)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3362)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3362
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248085"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1591)
                     /locus_tag="VE567_08955"
     CDS             complement(<1..1591)
                     /locus_tag="VE567_08955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="AcrB/AcrD/AcrF family protein"
                     /protein_id="HYZ49006.1"
                     /translation="MSASEMKLLDRWRLLVLLLWIGACVWLLWERWGGIHWFALGDTD
                     DNMRIAQVRAWLNGQGWYDLRQYRLNPPQGFDIHWSRLVDLPIAALILLVRPFVGGRI
                     AEQVAVAGAPLIPLLVALFSAALAARRLIEPRAALLGAAFVLCCQSALDQFRPLRIDH
                     HNWQLAFLMMTIAGLADPKRVRGGVVVGIASTLSLVIGLELLPYIAVAGASIALRWIA
                     HRDARPRLLAYAAAFGIAATIGFALFASYANRAPVCDALSPVWLSAILVACAVLLLIG
                     QLNPERWEARLALAAVAGAATAAFFWFTWPQCRGRPENVSPELYRLWLSNVREAKPIY
                     VQNAETIVAALTVPVIGLIGAAWGIWRARGQEAVYCWLSMVVLSLFSVGMLFWQIRAG
                     PAAQLIGVTGAAFLGWHLILWFAASRHLLVRVFGIAGAFLLVSGIAAYATFPLLPKEK
                     EDKPYWDKVKKANRTCPTLPALNPIAKLPATTIFTFADLGPRLIAVTHHDAVAGPYHR
                     NGQAILDVHHAFDGTPENARAI"
     gene            1667..2422
                     /locus_tag="VE567_08960"
     CDS             1667..2422
                     /locus_tag="VE567_08960"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYZ49007.1"
                     /translation="MSQHVYSSEFYDYIDAGSRASARTVARMLLGELKIESLLDVGAG
                     HGAWAAEWIAAGVPDVLAVDGDYVSRDRLAIPPERFRSHDLSQPLDLGRRFDLVQSLE
                     VAEHLPEAAAASFVDSLTRHGDLILFSAAVPHQGGEHHVNEQPLGYWRAKFARRGYAP
                     YDWLRPRLAHDRNVMPWYRFNTLLYANEAGAARLSPALLAARVPDRTTVDIPGDLRWR
                     ARRALVRLIPPALVKPIAMAKASIEARRRGLRC"
     gene            2416..2826
                     /locus_tag="VE567_08965"
     CDS             2416..2826
                     /locus_tag="VE567_08965"
                     /inference="COORDINATES: protein motif:HMM:NF016060.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HYZ49008.1"
                     /translation="MLSRLDPQARAAATQLVRYAIIGGLITAGGQAIYYFGVEWGGLD
                     PNLSIALAWLIGVLVGYFAHGWISFAGHGARDDHARMSFRFVMVNLFGFAMNSFFVWL
                     FVKALGGPTWWPIIPNIVVTPFATFLMHRYWTFG"
     gene            complement(2719..>3362)
                     /locus_tag="VE567_08970"
     CDS             complement(2719..>3362)
                     /locus_tag="VE567_08970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYZ49009.1"
                     /translation="LSRATDVHIPVDTGDFRLMTRRALDVFLAMPEQARFIRGMVAWL
                     GFRQVPLPYDRDERFAGATNYPFRKMLRFALDAITSFSSTPLKLASHAGILLSIGSLL
                     LIVYIFAGWLSGRAVEGWTSLMLVVVALGAVQMFVLGVMGEYLGRLYSQAKQRPLYIV
                     ADIRGARAERRTRLGIDASAERPIAVHQESGEGRHDDVGDDRPPGRAAERLYE"
BASE COUNT          609 a         1161 c         1082 g          510 t
ORIGIN      
        1 cgatcgcgcg ggcgttctcg ggcgtcccgt caaaggcgtg gtgcacgtcc agaatcgcct
       61 ggccattgcg gtgatagggt ccggcgacgg cgtcgtgatg tgtgaccgcg atgagccgcg
      121 gcccaagatc ggcgaaagtg aagatcgtcg tcgcgggcag cttggcgatc ggattcaggg
      181 ccggcaaggt cgggcaggtg cggttggcct tcttcacctt gtcccaataa ggcttgtcct
      241 ccttttcctt gggcagcagc gggaaagtgg cataggccgc gatgcccgag acgagcagga
      301 acgcgccggc aatgccgaac actcgcacca gcaggtggcg cgaggcggcg aaccagagga
      361 tcaggtgcca gccgagaaac gccgcgccgg tcacgccgat cagctgcgcc gccggcccgg
      421 cgcggatctg ccagaacagc atgccgaccg agaacagcga cagcacgacc atcgacagcc
      481 agcaatagac cgcctcctgc ccccgcgcgc gccagatgcc ccaggcggct ccgatcagcc
      541 cgatgaccgg gaccgtcagc gccgcgacga tcgtctcggc gttctgcaca tagattggct
      601 tcgcctcgcg cacgttcgac agccaaagcc gatagagctc gggcgagaca ttctccggcc
      661 gcccccggca ttgcggccag gtgaaccaga agaaagcagc cgtcgccgcg cccgccacgg
      721 ccgcgagcgc cagccgtgcc tcccaccgct ccgggttcag ttggccgatc agcagcagca
      781 cggcgcacgc gacgaggatc gccgatagcc agaccggcga cagcgcgtcg cacaccggcg
      841 cacggttcgc ataggaagcg aacaaggcaa agccgatcgt cgccgcgatc ccgaaggcgg
      901 ccgcataagc gagcaaccgc ggccgggcat cccgatgcgc gatccagcgc agtgcgatcg
      961 aagcgcccgc gaccgcaatg taaggcagca gctcgagccc gataaccagc gacaacgtac
     1021 tcgcgatgcc cacgaccaca ccgccgcgca cgcgcttggg gtcggccagc cccgcgatcg
     1081 tcatcatcag gaaggcgagc tgccaattgt gatggtcgat gcgcagtggc cgaaactgat
     1141 ccagcgcgct ctggcagcac agcacaaatg cagcgcccag cagtgccgcc cgcggctcga
     1201 tcagcctgcg cgcagcaagc gcggcgctga acagagcgac gagcagcgga ataagcggcg
     1261 ctcccgcgac cgccacctgc tccgcgatgc gtccacccac aaagggccgg accagcagga
     1321 tcagcgccgc gatcggcagg tcgacgagcc gcgaccaatg gatgtcgaac ccttggggcg
     1381 ggttcagccg atattgccgg agatcgtacc agccctgccc gttcaaccag gcgcgcacct
     1441 gggcaatccg catattgtcg tcggtatcgc ccagcgcgaa ccagtggatg ccgccccagc
     1501 gctcccagag cagccagaca cacgcgccga tccacaagag cagcaccagc agccgccagc
     1561 ggtccaacaa cttcatctca ctggcggaca taggactttc cccggcctta tcgcgccatt
     1621 aggggatcgc cgctaaaggg caagccgccc gcccgatcgg atcagcatga gccagcacgt
     1681 ctattccagc gaattctacg actatatcga cgccggctcg cgcgcatcgg cgcgcaccgt
     1741 cgcacggatg ctgctgggcg aactcaagat cgaaagcctg ctcgatgtcg gagccgggca
     1801 cggcgcctgg gcggccgagt ggatcgcggc aggcgtaccg gacgtgctgg cggtcgacgg
     1861 cgactatgtc tcgcgagacc gcctcgcaat cccgccggaa cgcttccgct cgcacgatct
     1921 gtcgcagccg ctcgacctcg gccggcgctt cgatctcgtc cagtcgctgg aagtcgccga
     1981 gcatttgccc gaggctgctg ccgcctcctt cgtcgactcg ctcacccgcc atggcgacct
     2041 gatcctcttc tccgctgccg tgccacacca gggcggcgag catcacgtca acgaacagcc
     2101 gctcggctat tggcgcgcta aattcgcgcg ccgaggctat gcgccctatg attggctccg
     2161 cccgcgcctc gcccatgacc ggaacgtgat gccctggtat cgtttcaata ccctgcttta
     2221 tgccaacgaa gccggggcgg cgcggctttc gcccgctctg ctcgccgcgc gggtgccgga
     2281 ccgcacgacg gtcgacattc cgggtgattt gcgctggcgg gcgcggcgcg cactcgtccg
     2341 gctgattcca ccggctttgg tcaagccgat cgcgatggcc aaggcgagta tcgaggcgcg
     2401 ccggcggggg ctgagatgct gagccggctc gatccccagg cgcgcgcggc cgctacgcag
     2461 cttgtccgct atgcgatcat cggcggactg atcaccgcgg gcggccaggc catttattat
     2521 ttcggcgtcg aatggggcgg gctcgatccg aacctgtcga tcgccctggc ctggctcatc
     2581 ggtgtgctgg tcggctattt cgcgcatggc tggatcagct ttgccggcca tggcgcgcgc
     2641 gacgatcatg cccgcatgag tttccggttc gtgatggtga acctgttcgg ctttgccatg
     2701 aacagctttt tcgtctggct attcgtaaag gcgctcggcg gcccgacctg gtggccgatc
     2761 atccccaaca tcgtcgtgac gcccttcgcc actttcctga tgcaccgcta ttggacgttc
     2821 ggctgaagcg tcgatgccga gccgggtccg ccgctcggcg cgggcgcccc tgatgtctgc
     2881 gacgatgtag agcggccgct gcttggcctg gctgtagagc cggccgagat actcgcccat
     2941 cacgcccagc acgaacatct gcacagcgcc cagcgcgacc acgaccagca tcagcgacgt
     3001 ccagccctcg accgcacggc ccgacagcca gccggcaaag atatagacga tcagcagcag
     3061 cgagccgatc gagagcagga tgccggcatg gctggccagc ttcagcggcg tcgaggagaa
     3121 gctggtgatc gcgtcgagcg cgaagcgcag catcttgcgg aacgggtaat tggtcgcccc
     3181 tgcgaaccgc tcgtcgcggt catagggcag cggcacctga cggaagccga gccaggcgac
     3241 catgccgcga atgaagcgcg cttgctcggg catcgccagg aacacgtcca gtgcgcggcg
     3301 cgtcatcagc cggaaatcgc ccgtgtcgac cgggatgtgg acgtcggtcg cgcgggaaag
     3361 ca
//
LOCUS       DASQVK010000413         2834 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_122383,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000413 DASQVK010000000
VERSION     DASQVK010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2834
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122383"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            152..679
                     /locus_tag="VE567_08975"
     CDS             152..679
                     /locus_tag="VE567_08975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49010.1"
                     /translation="MRLLPIKDPERSWRTIKAQWKKDAEGVGEEFATFGGIAAFDALA
                     SKEGDGPGLYCLTDGERMHAVCQVRRLLMSKYQEPILRARFVNVSPIYDLGQAGTDEY
                     AQMLVALFSGVVWLSRDTLTAAHIRFFLKSPGDSQYFAALQVATPLSPFSKFTIDGAL
                     IECSMKDASLPADAQ"
     gene            complement(687..1004)
                     /locus_tag="VE567_08980"
     CDS             complement(687..1004)
                     /locus_tag="VE567_08980"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HYZ49011.1"
                     /translation="MAPHPSEAIFDKLTMSALEGTPLWIALRDCGITAIALVGVAMDI
                     GIEPTARHAADLGIIPVIVTDACGSDHAEAAERSIDSLKFAGDAIFTGADAFCQALQR
                     KPA"
     gene            complement(1006..1332)
                     /locus_tag="VE567_08985"
     CDS             complement(1006..1332)
                     /locus_tag="VE567_08985"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HYZ49012.1"
                     /translation="MKHVLGLDIPQTLADVCDPQRLALVVYDMQVGILRQIKEPNQIV
                     GKVCQVLAAARAAGVRVFFMRHMSLPKELMGAFGYRMAMAGNASTIPKPSRPGSSGIR
                     RLRHHA"
     gene            1808..2815
                     /locus_tag="VE567_08990"
     CDS             1808..2815
                     /locus_tag="VE567_08990"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HYZ49013.1"
                     /translation="MSTTTSSTIYIDMFGVSPEVARPGCHLRDLVLHRQEIGSFVGDV
                     DEYCARFLDPQNDEIRDTVIATPDGRSIRLIYKRSPDGGWATTLEDVTERRRVQARIE
                     HLAHYDALTNLPNRTLFQRHAEGLLLQSGCIRFAILYIDIDEFKRINDSLGHLIGDEY
                     LKRVAERLRQSVGAEDFIARLGGDGFAIVQHGLTSDDDVSTLVARIYRALRTPFDCHG
                     HRLSGDASIGIAIAPQHGTDLFGLLKSADLAMYAAKAAGLRTHRFFEPSMEKEANLRR
                     ELESDLRAALVEGGFEIHYQPLVDLRSDEVTGCEALLRCIRCAAWYRRRISSRWPRRP
                     A"
BASE COUNT          521 a          872 c          898 g          543 t
ORIGIN      
        1 cttgcgtgaa atcattcatt cagatctgcg tcagccgccc agctggtgag aatttcgacg
       61 tcacgttgcc agccgcgtgc cgcgtaagca aacatttaaa cccctgtcat aaaatagttg
      121 tgcgacttcc tgcattaact cccggttaat catgcgcctg ctgccgatca aggacccgga
      181 gcggtcctgg cgtacaatca aggcccaatg gaagaaagac gctgaaggcg tcggggaaga
      241 gtttgccacc ttcggcggca tcgccgcgtt cgacgccctg gccagcaagg aaggcgacgg
      301 ccccggcctt tattgtctca ccgacggcga acggatgcac gcggtttgcc aggtccgccg
      361 actgttgatg agcaaatatc aggagccgat cctgcgggcg cgcttcgtca acgtctcgcc
      421 gatctacgat ctcgggcagg ccggcaccga cgaatatgcc cagatgctgg tggcgctgtt
      481 ttccggagtg gtgtggctgt cgcgggacac gttgacggcc gctcacatca ggttcttcct
      541 caaaagtccc ggcgactcgc aatactttgc ggcgctccag gtagcaacgc cgctgtcgcc
      601 gttctcgaaa ttcaccattg atggtgccct gatcgaatgc agcatgaagg atgcatcgtt
      661 gccggccgac gcgcagtgag tttcttctat gccggcttgc gctgcagagc ctggcagaac
      721 gcatccgcgc cggtaaaaat agcgtcgccg gcaaatttca gtgaatcgat cgagcgctct
      781 gccgcctcgg catgatctga gccgcaggcg tcggtcacga tgaccggaat gatgccgagg
      841 tcggcggcgt ggcgcgcggt cggctcgatg ccgatatcca tggcgacgcc gaccagcgcg
      901 atcgcggtga tgccgcaatc gcgcagcgcg atccagagcg gcgtgccttc cagcgcggac
      961 atcgtgagct tgtcgaagat cgcctcgctc ggatgcggcg ccacctcagg cgtgatggcg
     1021 aagccggcga atccctgaag aaccagggcg cgacggcttc gggatcgtcg aggcgttgcc
     1081 tgccatcgcc atgcggtagc cgaacgcccc catcagctcc ttcggcagcg acatgtggcg
     1141 catgaaaaac acgcgcacac cggctgcgcg cgccgcagcg agaacctggc agaccttgcc
     1201 cacgatctgg ttcggctcct tgatctgcct gaggatgcca acctgcatgt cgtagacgac
     1261 cagcgcaaga cgctgcgggt cgcagacgtc tgcaagtgtt tgcgggatgt cgaggcctag
     1321 gacgtgtttc atgggtcgct acctgctgca gtttgtttgc cggcgggaat gggtttcggt
     1381 cccggaatgc gtattccgac agccgctatt tgcggcggcg ggaactggcg agcctaacat
     1441 ggcgcggcgc taccggattg caacgatcgc aggtgccatt tttaccgctc gataactcat
     1501 tttacttacg ctcccttggg ttgtgggctc tagaacaagc gcctgcaaag gcggggaaat
     1561 gtcgatcagt tcagcggaca gcgtgatctc ggagaacgag cggccgttca cgcttgacgc
     1621 gttgttcggc gcgggtccag tggctgatct tgtgcgcggc ggcgctcgtc gtcgcgatcg
     1681 cactcggcac cggctacctg gtgctgaagt tccgcgagcg cgccctccag gtcgccgagc
     1741 agcgagctga acagcagcgc gctgctgctg tcgcgacatt tcgaccagca gctcagcgat
     1801 ctccagcgtg tccacgacga cgtcgtcgac catatacatc gacatgttcg gcgtgtcgcc
     1861 ggaggtggct cggccgggct gtcacctgcg cgatctcgtc ctgcatcgcc aggagatcgg
     1921 ttcattcgtc ggcgacgttg acgaatattg cgcgagattc ctcgatccgc agaatgacga
     1981 gatccgcgac accgtgatcg cgacgccgga cgggcgcagc atccgcctga tctacaagcg
     2041 ttcgccggat ggcggctggg ccaccacgct cgaagacgtg accgaacggc gccgggtgca
     2101 agccaggatc gagcatctcg cgcattacga cgcgctgacc aatctgccga accgaaccct
     2161 gttccagcgt cacgcagagg ggctgctgct ccaatccgga tgcatccggt tcgcgatcct
     2221 ctatatcgac atcgacgaat tcaagcgcat caacgattcg ctcggacatc tgatcggcga
     2281 cgaatatctc aagcgcgtgg ccgagcggct gcggcaatcg gtcggggcgg aggattttat
     2341 cgcgcgcctc ggcggcgatg gattcgccat cgtgcaacac ggcttgacgt ccgacgacga
     2401 cgtcagcacg ctggttgcac gcatttatcg ggcgctgcga acgccgttcg attgccacgg
     2461 tcatcgtctc tccggagatg ccagcatcgg tatcgcgatc gcgccgcagc acggcaccga
     2521 tctgttcggc ctgctcaaga gcgctgacct cgcgatgtac gcggccaagg ccgccggact
     2581 caggacccat cgcttcttcg agccgtcgat ggagaaggag gcgaatctcc gccgcgaact
     2641 cgagagcgat ctgcgggcgg cgctggtcga aggcggcttt gagatccact atcagccgct
     2701 ggtcgacctg cgcagcgacg aggtgaccgg ctgcgaggcg ctgttgcgct gcatccggtg
     2761 cgcggcatgg tatcgccggc ggatttcatc tcggtggccg aggagaccgg cttgatcgag
     2821 gagatcggcc aatg
//
LOCUS       DASQVK010000414         2226 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_153674,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000414 DASQVK010000000
VERSION     DASQVK010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2226
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153674"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1511)
                     /locus_tag="VE567_08995"
     CDS             complement(<1..1511)
                     /locus_tag="VE567_08995"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HYZ49014.1"
                     /translation="MSESSAYRVLARKYRPQRFSELIGQDAMVQTLANAIRRGRLAHA
                     FLLTGVRGVGKTSTARLIAKALNCVGPDGQGGPTIDPCGVCEPCRAIAEGRHIDVVEM
                     DAASHTGVDDVREIIEAVRYAAVSARYKVYIIDEVHMLSKNAFNALLKTLEEPPAHVK
                     FLFATTEVNKVPVTVLSRCQRFDLRRIPADKLAAHFGKVVEAEGAQAEPEALALIARA
                     AEGSARDGLSILDQAIAHADMEGGAVSAAQVREMLGLSDRGAIRRLFGHLLGGDAGAA
                     LGALRDQYDLGVDPVGVLRGLLEAVHGVTMAKMGGGADPAQSAEEREALGDWAARMSF
                     AQLHRLWQLLLKGHDEAVRSTMPLEAAEMALLRVVHAAELPDPAELLKRIGNGEAIAT
                     ARASAPAAAPASAPAARYPESFAALVELLGKSGKQLLAQQLHDFVGLQRYAPPELALK
                     PLKPMGSDFFRDLAAALKTLTGTVWTVGTDEGDAQPSLLQQELAAEEAAKQAIL"
     gene            complement(1731..1828)
                     /gene="ffs"
                     /locus_tag="VE567_09000"
     ncRNA           complement(1731..1828)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="VE567_09000"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            complement(2013..>2226)
                     /locus_tag="VE567_09005"
     CDS             complement(2013..>2226)
                     /locus_tag="VE567_09005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYZ49015.1"
                     /translation="MLLGRHDGLTPASIADSWLKQVRAPAKVGYWFENSAHMPMIEEP
                     GRLLEALLDIRSIAIRPRSQNSRPEP"
BASE COUNT          377 a          789 c          717 g          343 t
ORIGIN      
        1 aggatcgcct gcttcgccgc ttcctccgcg gccagttcct gctggagcag cgagggctgc
       61 gcgtcgccct catcggtgcc aaccgtccag accgtgccgg tcagcgtctt gagcgcggcg
      121 gcgaggtcgc ggaagaaatc gctgcccatc ggcttcagcg gcttcagcgc cagctcgggc
      181 ggcgcataac gctgcagccc gacaaagtcg tgcagctgct gcgccagcaa ttgcttgcca
      241 ctcttgccca gcagctcgac cagggccgca aagctttcgg gatagcgcgc agcgggcgcg
      301 gaagccgggg ccgcggccgg cgccgatgca cgcgcagtag ctattgcctc gccattgccg
      361 atccgcttca gaagctcggc cggatcgggc agctcggccg catgcacgac gcgcagcagc
      421 gccatttccg cggcttccag cggcatcgtc gatcgcaccg cttcgtcatg acccttgagc
      481 agcaattgcc atagccggtg cagttgggcg aacgacatcc gcgccgccca gtcgccaagc
      541 gcctcgcgct cctccgccga ttgggccggg tcggcgcccc cgcccatttt ggccatcgtg
      601 acgccgtgca ccgcctcgag cagcccgcgc agcacgccga ccggatcgac acccaggtca
      661 tattgatcgc gcaaggcgcc caaagccgcg cccgcgtcac ccccgagcaa atgcccgaac
      721 agccgcctga tcgcgccgcg atcggagagg cccagcatct cgcggacctg cgccgccgac
      781 actgcgccgc cctccatgtc cgcatgcgcg atcgcctggt cgaggatcga gagcccgtcg
      841 cgcgccgaac cttccgctgc ccgcgcgatc agcgccagcg cctcgggctc ggcctgcgcg
      901 ccttccgcct ccaccacttt cccgaaatgg gcggccagct tgtcggccgg aatccgccgc
      961 aggtcgaagc gctggcagcg cgacagcacc gtcaccggca ccttgttcac ctcggtcgtc
     1021 gcgaacagga atttcacatg cgccggcggc tcttcgagcg tcttcagcag cgcgttgaac
     1081 gcgttcttcg acagcatgtg cacttcgtcg atgatataga ctttgtaccg cgccgagacc
     1141 gccgcatagc gcaccgcctc gatgatttcg cggacatcgt cgacgccggt atgggacgcg
     1201 gcgtccatct cgaccacgtc gatgtgccgc ccttccgcga tcgcgcggca cggctcgcac
     1261 accccgcacg gatcgatcgt cggcccgccc tgcccgtccg gcccgacgca attaagggcc
     1321 ttcgcgatca gccgcgcggt cgaagtcttg cccaccccgc gcacgcccgt cagcaggaac
     1381 gcatgcgcca gccgcccccg ccggattgca ttggcgagcg tctgcaccat cgcgtcctgc
     1441 ccgatcagct cggaaaagcg ctgcggccga tatttgcgcg caagcacgcg gtaagcggag
     1501 gattcggaca ttgctcgttc tctacccgtt cgggtcgagc gaagtcgaga cgggagcgag
     1561 gagggtgccg ggagaatgag ggcagcgccg cggcaaagcc gcccttccac tgcttgccaa
     1621 ggaaggcgct gaggacaggc gacatgggca aagcccatgt cgtcggacgg cccgcagggc
     1681 cgccggccgc gctaggccgt ctcgccgccg gcacggcgac gtgcggccgt cgcggtggga
     1741 gccggaacga cccgcaacgg gttcgttacg gctgcttcct tccggacctg accgggttgg
     1801 cgaatgttac gtccgcccga ctcccgcggc acatatgggc aaagcagggg caaagggcaa
     1861 gccggcgctg gtcgttgaaa cggcgggcgt tcaaaacgcc aaacggattg gccaagccgg
     1921 ccggaaggaa gcggatcgcc cgaatcttcg gcgaatgagc gcaagaagcc gcagcacgcg
     1981 atccgaaagc ggccgtttgt gggccgcatc tgctaaggtt cgggccggga attctgggag
     2041 cggggccgaa tggcaatcga tcggatgtcg agcaaggctt ccaacaagcg cccaggctcc
     2101 tcgatcatcg gcatatgcgc cgagttctcg aaccagtagc cgacctttgc aggtgcgcga
     2161 acttgtttca gccaggagtc ggcaatcgat gcgggggtca gcccgtcgtg ccgtccaagc
     2221 agcatg
//
LOCUS       DASQVK010000415         5594 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_280239,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000415 DASQVK010000000
VERSION     DASQVK010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5594
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280239"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(65..874)
                     /locus_tag="VE567_09010"
     CDS             complement(65..874)
                     /locus_tag="VE567_09010"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010542716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HYZ49016.1"
                     /translation="MTVYAEVIGDPIAHSKSPLIHGFWLEALGIEAEYRRCQVRPEEL
                     GGYFEARRNDPDWRGCNVTVPHKETALDHVADPGGVRASIGAINTVFRDESGTIAGTN
                     TDAAGFWSPIAGLDWTGKPVALVGAGGAARAVLFALARMNVGRVTILNRTPLRAAGLL
                     ASFGLKGEALPLEAPLPPAALLVNASTLGMVGQPPLRLDLAPLPADAIVYDLVYAPLQ
                     TELLQAAEDRGLETIDGLEMLVGQAALAFELFFDAEPPRDRDDELRERLTA"
     gene            complement(871..1461)
                     /locus_tag="VE567_09015"
     CDS             complement(871..1461)
                     /locus_tag="VE567_09015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphatase"
                     /protein_id="HYZ49017.1"
                     /translation="MRLILASASASRRAMLEAAGVPFEALSPGVDEEAAKASLSALPP
                     RDLADALAELKALKISARDPGALVLGCDSVVALDDGTMLDKAESREKAAEHLRLLAGK
                     RHALFSAAVMAESGRPIWRFVDRAYMHVRPLSESFIQTYLDRDWEQARWCVGVYRLEG
                     PGAQLFSRIEGSHFTVLGLPLLPVLDYLRTREILAS"
     gene            complement(1452..2267)
                     /locus_tag="VE567_09020"
     CDS             complement(1452..2267)
                     /locus_tag="VE567_09020"
                     /EC_number="2.7.11.33"
                     /EC_number="2.7.4.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010123116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate, water dikinase regulatory protein"
                     /protein_id="HYZ49018.1"
                     /translation="MTRLHLHLLSDSTGETLETIAKAALAQFEGVETIKHFWPMIRSG
                     ANLQRILEEIAQNPGLVLFTLVNPETRRTLEQRCRALGLPAVGALDPVTDALSNMLGQ
                     TAVNRPGRQHALDAAYFARVDAIQFTIAHDDGVGWENWEEADIVLAGVSRTSKTPTSI
                     YLANRGYKVANMPLVVESPPPPALFHLKHPLVVGLTTNVDRLIQVRRNRLLSLKQAPE
                     TDYVDQEAVAREVAFARRMFADNGWPVIDVTRRSIEETAAAIINLCNERRQCA"
     gene            2548..3573
                     /gene="hemE"
                     /locus_tag="VE567_09025"
     CDS             2548..3573
                     /gene="hemE"
                     /locus_tag="VE567_09025"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011543112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HYZ49019.1"
                     /translation="MKSDRPLLSVLRGERRDPPPLWLMRQAGRYLPEYRALREAKGGF
                     LELVQDSEAAADITLQPIRRFGFDGAILFSDILVIPHALGQRLEFLAGEGPRLSPRLL
                     DATLAELCAAPERLTPVYETVRRVAAALPERVTFLGFAGSPWTVATYMVAGEGSREQG
                     ETRRFAYRDPAAFGAIIGAIENATLDYLSKQIEAGVHAVQLFDSWAGSLSPAQYEQWV
                     IAPTARLVAALKARHPEAPIIGFPKGSGGKLPSYARETGVDAIGLDETVDPEWANANL
                     PQGLPVQGNLDPLALIAGGAALQRATRRILDAFGNRPHVFNLGHGILPDTPIAHVEEL
                     LALVRGG"
     gene            3573..4016
                     /locus_tag="VE567_09030"
     CDS             3573..4016
                     /locus_tag="VE567_09030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HYZ49020.1"
                     /translation="MLGVLELSYLWLKAAHIVFVIFWMAGLFIFPRYLVHHQEALGRP
                     DEAAAWIEREAKLRKIILMPSIGAVWLFGLVLATVGHFWADRWLFAKLLVVIALSGFQ
                     GWAIGYSKRLAKGEAPLPTRRLRMLNELPALAIVLIVYLVVVKPF"
     gene            4149..5405
                     /gene="rho"
                     /locus_tag="VE567_09035"
     CDS             4149..5405
                     /gene="rho"
                     /locus_tag="VE567_09035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017671634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HYZ49021.1"
                     /translation="MHLKDLKKKAPAELVEMAERLGVEGASTLRKQDIMFAILKAEAE
                     NGEQIMGEGTIEVLPDGFGFLRSPEANYLAGPDDIYVSPNQVRKFGLRTGDTVEGEVR
                     GPKDGERYFALTRLSQVNFDDPEAVRHRVNFDNLTPLYPEQKLDLDPRDPTIKDKSAR
                     VIDIISPQGKGQRALIVAPPRVGKTVLLQNIARSITANHPEVFLIVLLIDERPEEVTD
                     MQRSVKGEVISSTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNT
                     VVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVIFEE
                     FKGTGNSEIVLDRKVADKRIFPAMDVGKSGTRKEELLVDKATLSKMWVLRRILMQMGT
                     VDAMEFLLDKMKDSKTNEDFFDSMNQ"
BASE COUNT         1002 a         1833 c         1796 g          963 t
ORIGIN      
        1 tcctcgaaca tcgccgccac tgtcgatttg cccatgccga tcgagccggt gaggccgagg
       61 atcttcatgc cgtcagccgc tcgcgcagct cgtcgtcccg gtcacgcggg ggttcggcat
      121 cgaagaacag ctcgaaggcg agcgcggcct ggccgaccag catttcgagc ccgtcgatcg
      181 tctccagccc gcgatcctcg gccgcctgaa gcaattcggt ctggagcggc gcatagacaa
      241 ggtcatagac gattgcgtcc gctggcagcg gcgccagatc gagacgcagc ggcggctggc
      301 cgaccatgcc cagcgtgctg gcattgacca gcagagccgc gggcggcagc ggcgcttcga
      361 gcggcaacgc ctcgcctttg aggccgaagc tggcgagcag gccggcggcc ctgagcggcg
      421 tgcggttgag gatcgtcacc cgcccgacgt tcatccgcgc aagcgcaaac agcaccgccc
      481 gcgccgcgcc cccggcgccg accagggcga ccggcttgcc ggtccagtcg agccccgcga
      541 tcggcgacca gaagcccgct gcatcggtgt tggtgcccgc aatcgtcccg ctctcgtcgc
      601 gaaacaccgt gttgatcgcc ccgatgctcg cgcgcacgcc gcccggatcg gcgacatgat
      661 cgagcgcggt ctctttatgc ggcaccgtca cgttgcagcc gcgccagtcg gggtcgttcc
      721 gccgcgcctc gaaatagccg cccagttcct cgggacggac ctggcaccgg cgatactcgg
      781 cctcgatgcc gagcgcctcg agccagaagc cgtggatcag cggcgacttt gaatgagcga
      841 tcggatcgcc gatcacttcc gcatagacag tcatgacgcc agaatctcgc gcgtgcgcag
      901 atagtcgagc accggcagca gcggcaggcc aagcacggtg aaatggctcc cctcgatccg
      961 gctgaacagc tgggcgcccg gtccttcgag ccgatagacg ccgacgcacc aacgcgcctg
     1021 ctcccaatcc cggtcgagat aggtctggat gaagctctcg gagagcggac gcacatgcat
     1081 ataggcgcga tcgacgaagc gccagatggg ccgcccggat tcggccatca ccgcggcact
     1141 gaacagcgcg tggcgcttgc ccgcgagaag ccggagatgc tcggccgcct tttcgcggga
     1201 ctcggccttg tcgagcatcg tcccgtcatc gagcgcgacc accgaatcgc agccgagcac
     1261 cagggcgccg gggtcgcgcg ccgaaatctt gagcgccttg agctcggcca gcgcgtcggc
     1321 cagatcgcgg ggcggcagcg cgctcaggct cgctttggcc gcttcctcat ccacgcccgg
     1381 cgatagcgct tcgaacggca cgcccgccgc ttccagcatc gcgcgccggc tcgccgaggc
     1441 ggaggcgagg atcaggcgca ttgccgacgc tcgttgcaca ggttgatgat cgcggcggcc
     1501 gtctcctcga tcgatcggcg cgtgacgtcg atcaccggcc agccattgtc cgcgaacatg
     1561 cgccgcgcga atgccacctc gcgggcgacc gcttcctggt cgacataatc ggtctcgggc
     1621 gcttgcttga gcgacagcag ccgattgcgc cgcacctgga tcagccggtc gacattggtg
     1681 gtgaggccaa cgacgagcgg gtgcttcagg tgaaacaaag caggcggcgg cggcgattcc
     1741 accaccaggg gcatgttcgc gaccttgtag ccgcgattgg cgagatagat ggaagtcggc
     1801 gtcttggacg tgcgcgagac gcccgccaat acgatatcgg cttcctccca attctcccag
     1861 ccgacgccgt cgtcatgcgc gatcgtgaac tggatcgcgt cgacccgcgc gaaataggcg
     1921 gcgtcgagcg cgtgctggcg ccccggccgg ttgactgcgg tctgccccag catgttggaa
     1981 agcgcatcgg ttaccggatc gagcgcgccc accgccggca gcccgagtgc gcggcagcgc
     2041 tgttcgagcg tgcgccgcgt ctccggattg accagagtga acagcaccag ccccggattc
     2101 tgcgcaatct cctcgaggat ccgttgcaga ttggcgccag agcggatcat gggccagaag
     2161 tgcttgatcg tctcgacgcc ttcgaattgg gcgagcgccg ccttggcgat cgtttccaat
     2221 gtctcgccgg tcgagtccga cagcagatga agatgaagcc tggtgatcac ccgcatatcc
     2281 ctgtggaaaa gcgcgcggag aggcaagcgt gagaaaagcg gacgcttatc ggcacccggt
     2341 cccatgctat ggttcaacag catcgccaac agccggacaa atccgttcga ccgctgtgga
     2401 ttgcggggag attgtacgcg actcgggaac cttccgcgat tccgcaggag tcaaattgtt
     2461 ggcagagtcc gggcgaaatc cttattcccg cctccagcgc ctccactaac ttcaacatcc
     2521 tttttcaatt tcaataagaa agataagatg aagagcgatc gtcccttgct gagcgtgctc
     2581 cgcggcgaac ggcgcgatcc gccaccccta tggctgatgc gccaggccgg gcgctatctt
     2641 cccgagtacc gggcgctcag ggaagcgaag ggcgggttcc tggaattggt ccaggacagc
     2701 gaggccgcgg ccgacatcac cttgcagccg atccgccgct tcggtttcga cggcgcgatc
     2761 ctgttttcag acattctcgt gatcccgcac gcgctggggc agcggctcga attcctggcc
     2821 ggcgaagggc cgcgcctgtc gccgcgcctg ctggacgcca cgctcgccga gctgtgcgcg
     2881 gcgcccgagc ggttgacgcc ggtctatgag acagtgcgcc gcgtggctgc ggcgctgccg
     2941 gagcgcgtca ctttcctggg ctttgccggc agcccctgga cggtcgccac ctatatggtc
     3001 gccggcgaag gcagccgcga acagggcgag acgcggcgct tcgcctatcg agatccggcc
     3061 gcgttcggtg cgatcatcgg ggcgatcgag aatgccacgc tcgattatct gtcgaagcag
     3121 atcgaggcgg gcgtgcacgc cgtccagctc ttcgacagct gggctggaag cctctcgcct
     3181 gcccaatatg agcaatgggt gatagcgccc accgcgcgcc ttgtggccgc gctcaaggcg
     3241 cggcatcccg aagcgccgat catcggcttt cccaaaggct ccgggggcaa gctcccttcc
     3301 tatgcgcgtg agaccggcgt ggacgcgatc gggctcgacg agacggtcga tcctgaatgg
     3361 gcgaatgcga atttgcccca aggtctgccg gtccagggca atctcgaccc gctggcgctg
     3421 atcgccggcg gcgccgcgct gcaacgggcg acgcggcgga tccttgacgc gttcggcaac
     3481 cggccgcacg tcttcaatct gggccatggc attctacctg acacgccgat tgcgcatgtc
     3541 gaagagctgc tcgcgctcgt aagaggaggc tgatgcttgg agtcctggaa ttgtcctatc
     3601 tctggctgaa ggcggcccat atcgtcttcg tcatcttctg gatggcgggg ctgttcattt
     3661 ttcctcgcta tctggtgcat caccaggaag cgctgggccg gcccgacgaa gccgctgcct
     3721 ggatcgagcg cgaggcgaag ctccgcaaga tcatcctgat gccttcgatc ggcgcggtct
     3781 ggctgttcgg gctggtgctc gcgacagtgg gccatttctg ggccgaccgc tggcttttcg
     3841 ccaagctgct ggtcgtcatt gccttgagcg gatttcaggg ctgggcgatc ggctattcga
     3901 aaagattggc gaagggcgaa gcgccgctgc ccacacgccg gctgcgcatg ctcaacgagc
     3961 tgccggcgct tgccatcgtc ctcatcgtct atctggtggt ggtgaaaccc ttctgacccg
     4021 cttgacttga aaccggctgc tgcctaactc atcggaagtc gtgcggctgt tttccttagc
     4081 cgcgcgtttc ccccagatcg ctatttctcc ttccgatcgc cacccgaaaa ccagattccg
     4141 agctctccat gcatctcaaa gacctcaaga aaaaagcgcc cgccgaactc gtcgaaatgg
     4201 ccgagcggct gggcgtcgag ggcgcgtcca cgctccgcaa acaggatatc atgttcgcga
     4261 ttttgaaggc cgaggccgaa aatggcgaac agatcatggg cgagggcacg atcgaggtgt
     4321 tgccggatgg cttcggcttt ctgcgctcgc cggaagcgaa ttacctggcc ggcccggacg
     4381 acatctatgt ctcgccgaac caggtgcgga aattcggcct gcgcacgggc gacacggtcg
     4441 agggcgaagt ccgcggaccc aaggatggcg agcgctattt cgcgctgacc cggctgagcc
     4501 aggtcaattt cgacgatccc gaggccgtgc gccaccgcgt caatttcgac aacctgacgc
     4561 cgctttaccc ggagcagaag ctcgatctcg atccgcgcga cccgacgatc aaggacaagt
     4621 cggcgcgggt gatcgacatc atctcgcccc agggcaaggg ccagcgtgcg ctgatcgtcg
     4681 ccccgccgcg ggtcggcaag accgtcctgc tgcagaacat cgcgcgctcg atcacggcca
     4741 atcatcccga agtattcctg atcgtgctgc tgatcgacga gcggcccgag gaagtcacgg
     4801 acatgcagcg ctcggtgaaa ggcgaagtga tcagctcgac cttcgacgag ccggccagcc
     4861 gccacgtcca ggtcgccgaa atggtgatcg agaaggcaaa gcgtctggtc gagcacaaga
     4921 aggacgtggt gatcctgctt gattcgatca cgcgcctggg ccgcgcctac aacacggtgg
     4981 tgccgagctc gggcaaggtg ctgacgggcg gcgtcgatgc gaacgcactg cagcggccga
     5041 agcgcttctt cggcgccgcg cgcaacatag aggaaggcgg ctcgctctcg atcatcgcca
     5101 ccgcgctgat cgacaccggc agccgcatgg acgaagtcat cttcgaagag ttcaagggca
     5161 ccggtaacag cgaaatcgtg ctcgaccgca aggtcgccga caagcgcatc ttcccggcca
     5221 tggacgtcgg caagtccgga acgcgcaagg aagagctgct ggtggacaag gcgacactct
     5281 ccaagatgtg ggtgctccgc cgcattctga tgcagatggg cactgtcgac gcgatggagt
     5341 tcctgctcga caagatgaag gactcgaaga ccaacgagga tttcttcgac agtatgaatc
     5401 aataacgagg cgtggccgtg gctgtgccag ccacggactc acgcgcgctc ggccggcggg
     5461 ccaccggccc gaccgacggc gcggagtcac tccgcgccct ttttctttga tgccgaacta
     5521 aaaggcggca ttcgaagcag ctgcctcgag cggaagcctc gcttcgcccc gcctcgcttc
     5581 gccgtgctcc agcg
//
LOCUS       DASQVK010000416         3192 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_185133,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000416 DASQVK010000000
VERSION     DASQVK010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3192
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185133"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..301
                     /gene="rsfS"
                     /locus_tag="VE567_09040"
     CDS             <1..301
                     /gene="rsfS"
                     /locus_tag="VE567_09040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011540888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HYZ49022.1"
                     /translation="ETVSIPLEGKSSIADHMVIASGRSTRQVASMAQKLVERIKGELG
                     RPARVEGLPTADWVLIDAGDVVVHLFRPEVRSFYNLERMWAFGEAPAVVPSPANT"
     gene            305..727
                     /locus_tag="VE567_09045"
     CDS             305..727
                     /locus_tag="VE567_09045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006962282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HYZ49023.1"
                     /translation="MLLHVVARGRIGRSPEADLVERYAKRIVWPLKLTELPEQGGRIP
                     PRERDGVTVVLDERGEQLSSFELARRLERWRDAGRRECRFLIGPADGHDAVERASADL
                     LLAFGRATWPHLLARAMLMEQLFRATAILANHPYHREG"
     gene            727..1881
                     /locus_tag="VE567_09050"
     CDS             727..1881
                     /locus_tag="VE567_09050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003040377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HYZ49024.1"
                     /translation="MKLWLALGALGVATALAAQTDPRAELARERAQANAARARSASLE
                     AQAGAARDEAERARVAQAALAARIQAAEADVAAAEARLAIVHRLQRAQEQRLARRQQP
                     IVKLVAALQTMARRPASAALVQPGTLSDLVHVRALLAAMAPQVAAQTAALRAELDQAR
                     RLRAQGRQAVAALREGQRQGRLEQQRLIRLEIDQRRRSAELASSARLEAERALALGET
                     SRDLEELAQKLDAQGNLRERLASLPGPLPRPAHLSEALPADAAAARPPRLAFRLPVLG
                     PVTRGFGEASAAGARARGITIAARPGAIVVAPARGRVTFAGLYRGYGAIAILDHGGGF
                     TSLVTGLAANIARVGDTVEQGGPLGRAGRNGVTVELRQAGQPVDLATLVG"
     gene            1943..>3192
                     /locus_tag="VE567_09055"
     CDS             1943..>3192
                     /locus_tag="VE567_09055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012048759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HYZ49025.1"
                     /translation="MFRPVLRATALVAALALVPLATSGLAAVDNDTYKELDEFMNVFE
                     RVRAEYVDKVDDKTLIKGAINGMLSSLDPHSSFLDATDFQSMKAQTDGNYGGLGLTVT
                     MEDGAVKVIAASEDTPAYRAGIKPGDYITHLNGQLLFGGTLDEAVEQMRGKPGTAIKL
                     TIVRPGRDKPFDLSLNREVIELKPVKWEVKGDVGVININSFSKNTGAGVHAAIVGIQK
                     ALGHKPAGYVVDLRSNPGGLLDQAIEVSDVFLDHGEIVSQRGREKNDIERYYAKPGDE
                     TGGAPVVVLVDAGSASAAEIVAAALQDHHRAIVMGERSFGKGSVQTLLPLSQTTALRL
                     TTARYYTPSGRSVQEGGIEPDIKVPQLSDADYKDRPRFREADLRRHLINQAKVDNSVL
                     EEDTKDDPRFKLTSEQLEKQGVKD"
BASE COUNT          507 a         1089 c         1105 g          491 t
ORIGIN      
        1 cgagaccgtc tcgatcccac tggagggcaa aagcagcatc gccgatcaca tggtgatcgc
       61 gtcgggccgc tcgactcgcc aggtcgcctc gatggctcaa aagcttgtcg agcggatcaa
      121 gggcgagctg ggccgccccg cccgggtgga gggtctgccg accgccgact gggttctgat
      181 cgacgccggc gacgtggtcg tccacctgtt ccgcccggaa gtgcgcagct tctacaatct
      241 ggagcggatg tgggcgttcg gcgaagcgcc ggcggtggtg cccagccccg ccaatacctg
      301 atcgttgctg ctccacgtcg tcgcgcgcgg ccggatcggg cgcagtcccg aggccgatct
      361 ggtcgagcgt tacgcgaagc gcatcgtctg gccgctgaag ctcacggagc tgccggagca
      421 aggcggccga attccgccgc gggagcgcga cggcgtcacc gtggtgctcg acgagcgagg
      481 cgagcagctc agctcgttcg agttggcgcg ccggctggag cgatggcgcg atgccgggcg
      541 gcgggagtgc cgcttcctga tcggacccgc cgatggccat gatgcggtcg aacgcgcctc
      601 cgccgatctt ctgctcgctt tcgggcgtgc gacctggccg catctgcttg cccgcgcgat
      661 gctgatggag cagctcttcc gcgcgaccgc gattcttgcc aatcatccct atcaccggga
      721 gggatgatga agctctggct tgcgcttggc gctcttggcg tggcgaccgc gctcgccgcg
      781 cagacggatc cgcgcgccga actcgccagg gagcgcgcgc aggcgaatgc cgctcgggcg
      841 cgttccgcga gccttgaggc gcaggcgggg gccgctcgcg acgaggccga gcgcgcgcgc
      901 gtcgctcagg ccgcgctcgc cgcgcggatt caggcggcgg aggccgatgt cgctgctgcc
      961 gaggcgcggc tggcgatcgt ccaccggctg cagcgtgcgc aggagcagcg tctcgcccgg
     1021 cgccagcagc cgatcgtgaa gctggtggcc gcgctccaga ccatggcgcg ccgtccggct
     1081 tcggcggcgc tcgtccagcc gggcacgctc tccgatctcg tccatgtccg cgcgctgctc
     1141 gccgcgatgg cgccgcaagt cgcggcccag accgcggcgc ttcgggccga gctcgatcag
     1201 gcgcgccggc tccgtgccca ggggagacag gcagtagcag cactccgcga aggtcagcgc
     1261 caggggcggc tggaacagca gcgccttatc cggctcgaaa tcgatcagcg ccgccgctcg
     1321 gcggagctcg cgagcagcgc acggctggag gccgagcgag cgctggccct gggcgagacc
     1381 agccgcgacc tcgaagaact cgcacagaag ctcgatgcgc agggaaatct gcgcgagcgg
     1441 ctcgcaagcc tgcccggccc actgccacgc cccgcgcatt tgtccgaagc gcttccggcc
     1501 gatgccgctg cggcccggcc gccacggctc gcgtttcgcc tgcccgtgct ggggccggtg
     1561 acccgcggct tcggcgaagc ctcggccgca ggcgctcgcg cgcggggtat caccatcgcc
     1621 gcacggcccg gtgcgatcgt cgtggcgccg gcgcggggcc gcgtgacctt cgccggcctt
     1681 tatcgcggct atggcgcaat cgcgatcctc gaccatggcg gcggcttcac cagcctcgtg
     1741 accggccttg ccgccaatat cgcgcgggtc ggcgacacgg tcgagcaggg cggcccgctg
     1801 ggccgcgccg gcaggaacgg cgtcacggtt gagcttcgtc aggccggcca gccggtcgat
     1861 ctggcgacgc tcgtcggttg acctttaatc cccgtcgaaa agcctatatt cacgagcaag
     1921 ctcttctggc aggatgcctt ctatgtttcg ccccgtattg cgtgccaccg cccttgtagc
     1981 ggctctcgcc cttgttccgc tcgccacctc cggcctcgcc gctgtcgaca acgataccta
     2041 caaggaactc gacgagttca tgaacgtgtt cgagcgcgtg cgcgccgaat atgtcgacaa
     2101 ggtcgatgac aagacgctga tcaagggcgc gatcaacggc atgctgtcca gcctcgatcc
     2161 gcacagctcg ttcctcgatg cgaccgactt ccagtcgatg aaggcgcaga cggacggcaa
     2221 ttatggcggc ctgggcctca cggtcacgat ggaggacggc gcggtcaagg tgatcgcggc
     2281 gagcgaggat acgcccgcct atcgcgcggg aatcaaaccc ggggactata tcacgcacct
     2341 gaacggccag ctgctgttcg gcggcacgct cgacgaagcg gtcgaacaga tgcgcggcaa
     2401 gcccggcacg gcgatcaagc tgacgatcgt ccgcccgggc cgcgacaagc ccttcgacct
     2461 ttcgctcaat cgcgaagtga tcgagctgaa gccggtgaaa tgggaagtga agggcgatgt
     2521 cggcgtcatc aacatcaaca gcttctcgaa gaacaccggc gctggcgtcc atgccgcgat
     2581 cgtcggcatc cagaaggcgc tgggccataa gccggccggc tatgtggtcg acctgcgttc
     2641 caatcccggc ggcctgctcg atcaggcgat cgaggtgtcg gacgtcttcc tcgatcatgg
     2701 cgagatcgtc tcgcagcgcg gtcgcgagaa gaacgatatc gagcgctatt acgccaagcc
     2761 cggcgacgaa accggcggcg cgccggtggt cgtgctggtc gatgccggct ccgcctcggc
     2821 ggcggagatc gtcgccgccg cgctccagga ccatcaccgc gcgatcgtga tgggcgagcg
     2881 cagcttcggc aagggctcgg tgcagacctt gctgccgctc tcgcagacga cggcgctgcg
     2941 cctgacgacg gcgcgctact acacgccgtc gggccgctcg gtgcaggaag gcgggatcga
     3001 gccggatatc aaggtgccgc agctcagcga cgcggattac aaggaccggc cgcgcttccg
     3061 cgaggcggac ctgcgccgcc acctgatcaa ccaggccaag gtcgacaatt cggtgctgga
     3121 ggaagacacc aaggacgatc cgcgcttcaa gctgacgtcc gagcagctcg aaaagcaggg
     3181 cgtgaaggac tt
//
LOCUS       DASQVK010000417         8250 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_60628, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000417 DASQVK010000000
VERSION     DASQVK010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 8250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8250
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60628"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..211
                     /locus_tag="VE567_09060"
     CDS             <1..211
                     /locus_tag="VE567_09060"
                     /inference="COORDINATES: protein motif:HMM:NF023148.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="I78 family peptidase inhibitor"
                     /protein_id="HYZ49026.1"
                     /translation="AMEGCDVSELKDVIGRPFDEALQAQAQAATGAKSVRVIRPGQMV
                     SMDYVPDRLNLELDAQDKVVSARCG"
     gene            complement(192..629)
                     /locus_tag="VE567_09065"
     CDS             complement(192..629)
                     /locus_tag="VE567_09065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019053052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4112 domain-containing protein"
                     /protein_id="HYZ49027.1"
                     /translation="MASRYSRVADIARSLPTQKDPHGVRRRVEAMEALLERIVTIPGT
                     NRQLGLDVILDLIPGIGSFVAGALGAWMLWEARNLGMSKWQMARMSANIGFDTLLGAI
                     PWVGAIPDFFFRSNTRNLRIIKRHLDRHHPATVTLSGVSRSGR"
     gene            complement(677..2137)
                     /locus_tag="VE567_09070"
     CDS             complement(677..2137)
                     /locus_tag="VE567_09070"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYZ49028.1"
                     /translation="MAVIELVAMKRWLLPLLMLAACGQAEDQGPIRVSAIGGPPTLVD
                     PNRTQADLPQRVLLGAVAETLVAYDAAGQITPALAQRWVITSDGLSAIFRLRRAAWTN
                     GKQVTSEEVARWARAIIAPNSRNPLRDAFDSIEEINPTTPEVIEFRLTTPRPPLLQLL
                     AEPEASILSRALLTSGPYQVARRTGATAVLTPRDRPAQGERALPTIRLTGERAAKAIA
                     RFLSRDTDLVLGGTYRDWPIVQAAQPQDRTIRLDPAEGLFGLSFQRTDGFFADPLNRQ
                     VLGMVIDRDAILNAFNAPGWAGALTVLPQRYRSAADPAFPPWAVYELAGRIDEARRRL
                     GAWRASHPEPVRVRLYLPEGPGSTLLYGRLAADWRQLGIETVRTNAREADLRIVDQVA
                     PAGSALWYLTTLACPTGDACSEETVAALDRARDAQSLVERGTQLAMADRALANSGLYI
                     PLTRPLRWSLVAQRLSGFRENPRAWHPLTALIRRQR"
     gene            2199..3275
                     /locus_tag="VE567_09075"
     CDS             2199..3275
                     /locus_tag="VE567_09075"
                     /inference="COORDINATES: protein motif:HMM:NF021603.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2336 domain-containing protein"
                     /protein_id="HYZ49029.1"
                     /translation="MALTARDGGENAPTGPDRLLAEAAHVARNADARIAAALNDLFLP
                     DFVRPTDSQRAAMANMLDRLVTDIDHDLRAGIIDRLGEDAPPVLGVTRIPILRPIFDR
                     ASVLRDRELVSLLLTRAEETRICQSIRRVAEIDPGPAPHIRLDLPEELETALLRAENR
                     RSGAHGEPNLTVRDLSADLLHKLLWWGAAALRDYLERSTPLDPGRRDEALTAVVHARL
                     AAHDEGQTLEAAAMRAALALNTEDALLFELFRAGRFSLFVALLAARARIEFMPAFLLA
                     ADPGIGALAVLLRAVDVSTQVAAPILLQMAAINHLSEAKLEERVNDFLDLDAAAAQGA
                     VRPWRLERAFRTAIADIGRERRQR"
     gene            3272..4606
                     /locus_tag="VE567_09080"
     CDS             3272..4606
                     /locus_tag="VE567_09080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HYZ49030.1"
                     /translation="MSSLAHGRIDREGRLIEAEPPLRRLQESAGAGLGQPIAVPQIAT
                     MARLAQRLGILVSRCVIAAEGSDDLDLWVEAKPDSEGVALSVGGWARRPAREQEDKGE
                     RIYDFMRSRGDWLWETDPALRLASLGFEGGETMVGQPLARLFQFVEAGEDGLPILEAL
                     ASRARFEGQEAVVRTTGERVRLSGLPLIDGGGRFAGYRGSAFRIDGDFAASAGAAEAE
                     GEAEADAFSARLERALRGPLSRIVDQAETIGAQQDGPIRRDYAEYANDIASAGRHLLG
                     LIGDLVDLQAIERDDFRPRTERIDLAALARRAAGLLKVAAADHGVRIDGPGPDERLVA
                     IGDEGRVVQILVNLVDNAIRHSPDGAAVWLRGEAQNGRAILVVADQGPGVASRDQDRI
                     FEKFTRLDPGDGAGSGLGLYIARRLARAMAGDLVVDSAPGQGARFILALPAA"
     gene            complement(4603..5124)
                     /locus_tag="VE567_09085"
     CDS             complement(4603..5124)
                     /locus_tag="VE567_09085"
                     /inference="COORDINATES: protein motif:HMM:NF024317.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3833 family protein"
                     /protein_id="HYZ49031.1"
                     /translation="MFRSTSAKLFLLAAAGLIGCAAGQPDSAAPAPQPVFDPAVFFAG
                     RTRGEATLKVVLKRAEPVHVEGRGRVTQEGTLILDQTVARGGRAPETRQWRIRSAGGG
                     RVFGSLSDATGPVTGEIRGNMLHLRYPMKGGVDADQRIYLQPGGRTALNRMTISKFGL
                     TVGRLDETIRKLD"
     gene            complement(5102..6385)
                     /locus_tag="VE567_09090"
     CDS             complement(5102..6385)
                     /locus_tag="VE567_09090"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HYZ49032.1"
                     /translation="MDNKAKLALGGKDCEFPVVKGSVGPDVIDIRKLYAQTGAFTYDP
                     GFTSTASCESAITYIDGDEGVLLHRGYPINQLAEQSTFMEVCYLLLNGELPKQDELTK
                     FTYTITRHTMLHEQLATFYRGFRRDAHPMAIMCGVVGALSAFYHDSTDITDPQQRMIA
                     SHRLIAKMPTIAAAAYKYAMGQPFLYPDNSLSYTGNFLRMTFGVPAEPYVVNPVVERA
                     MDRIFILHADHEQNASTSTVRLAGSSGANPFACIAAGIACLWGPAHGGANEAALNMLR
                     EIGRPERIPEYIARAKDKNDPFRLMGFGHRVYKNYDPRATVMQKTVREVFEALKVSDP
                     VFEVALQLEEMALSDSYFIEKKLFPNVDFYSGVILSAIGFPTSMFTALFALARTVGWI
                     AQWNEMITDPDQKIGRPRQLYTGPVQRDYVPLDQR"
     gene            complement(6398..7834)
                     /gene="gltX"
                     /locus_tag="VE567_09095"
     CDS             complement(6398..7834)
                     /gene="gltX"
                     /locus_tag="VE567_09095"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009332 - glutamate-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HYZ49033.1"
                     /translation="MSASSVVTRFAPSPTGFLHIGGARTALFNLLFARHHGGQFLLRI
                     EDTDKARSTQEAIDAILDGMTWLDLAWDGEVVYQSARAPRHVEVANQLLESGHAYRCY
                     ATSEELAALREAQREAKQPLRYDGRWRNRTDWPEGQPYAVRLKAPREGETVIDDLVQG
                     RVTVQNSELDDMILLRSDGTPTYMLAVVVDDYDMGVTHVIRGDDHLNNAFRQLGIIKA
                     MGWPEPAYAHIPLIHGADGAKLSKRHGALGVDAYRDELGILPEALSNYLLRLGWGHGD
                     AEIISREQAVEWFDIGGVGRSPSRFDLKKLENLNGHYLREADDARLAALAAPRVQTLI
                     GRELSASEQALLARAMPELKPRAKNLNEIAEGATFLFATRPLALDEKAAALLEGEALT
                     LLGKTHDVLASVSDWTGEQVEEAVRRVAEETGIGLGKVAQPLRAALTGRTTSPGIFDV
                     LILLGSDESLARLADLCKEPGAAAAPCD"
     gene            7921..>8250
                     /locus_tag="VE567_09100"
     CDS             7921..>8250
                     /locus_tag="VE567_09100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComEC"
                     /protein_id="HYZ49034.1"
                     /translation="MVAPALDGIERWLEAERDQLPLWLPVMLAAGIAGWFLLPDRSSW
                     LALIAAALGLALAGLAIGPGRRAGFATQVAGLAIASGCALVWAKAEWVAAPVLTRPMI
                     ASFTADVE"
BASE COUNT         1317 a         2685 c         2842 g         1406 t
ORIGIN      
        1 ggccatggaa ggatgcgacg tgtcggagct gaaggatgtg atcggcaggc ccttcgacga
       61 ggcgctgcag gctcaggccc aggccgcaac gggtgccaaa tcggtgcgag tcattcgccc
      121 gggccagatg gtctcgatgg actatgtgcc ggaccggctg aacctcgagc tcgacgccca
      181 ggacaaagtc gtcagcgccc gctgcggctg acaccgctca gcgtcaccgt cgccgggtga
      241 tgccggtcga gatggcgctt gatgatcctg aggttccgcg tgttcgagcg gaagaagaaa
      301 tcggggatcg cgccgaccca cgggatcgcg cccagcagcg tatcgaaccc gatattcgcc
      361 gacatccgcg ccatctgcca cttcgacatg cccagattgc gcgcttccca cagcatccac
      421 gcgccgagcg cgccggccac gaagctgccg atgcccggga tcaggtcgag gatcacgtcg
      481 aggcccagtt gccggttcgt gccgggaatc gtgacgatcc gttcgagcag cgcttccatc
      541 gcctcgaccc ggcggcggac gccgtgcggg tccttctggg tcggcaaact gcgggcgata
      601 tccgcgacgc gactgtagcg actggccatc tcgtctcctc ttcgcgagct aagatgggga
      661 gagcaaaggc ttttcgctag cgttgccgcc ggataagcgc ggtgagcgga tgccaggcgc
      721 ggggattttc ccggaacccg ctcagtcgtt gtgcgacaag cgaccagcgc agcggccgtg
      781 tgagcgggat gtagagcccg gaattggcca gtgcgcgatc ggccatcgcg agctgcgttc
      841 cgcgctcgac cagcgattgg gcatcgcggg cccggtcgag cgccgccacc gtttcttcgg
      901 agcaagcgtc gccggttggg caggcgaggg tcgtcagata ccaaagcgcg cttccggcgg
      961 gggcgacctg gtcgacgatc cgcaggtccg cctcgcgcgc gttggtgcgc actgtctcga
     1021 ttccgagctg gcgccaatcg gccgcgagcc gcccgtaaag cagggtgctg cccggccctt
     1081 ccggcagata gagcctcacg cgcacgggct ctggatggct ggcgcgccag gcgccgagcc
     1141 gccgccgcgc ttcgtcgatc ctgccggcaa gttcgtaaac cgcccaaggt ggaaaggccg
     1201 ggtccgccgc cgaccgatag cgctggggaa ggacggtcag cgcgcctgcc cagcccggcg
     1261 cgttgaaggc gttcaagatg gcgtcgcggt cgatcaccat gccgagcacc tggcgattga
     1321 gcgggtcggc gaagaagccg tcggtccttt ggaaggagag accgaacaga ccttcggccg
     1381 ggtcgagccg gatcgtgcga tcctgcggct gcgcggcctg cacgatcggc caatcacgat
     1441 aggtgccgcc caggacgaga tcggtgtcgc gcgaaaggaa gcgcgcgatc gccttggccg
     1501 ctcgctcgcc ggtcaggcgg atcgtcggca acgcgcgttc gccttgggcc ggtcggtcgc
     1561 ggggcgtgag gaccgcagtg gcgccggtcc gccgcgctac ctgatacgga cccgaggtca
     1621 gcagcgcgcg cgagagaatg ctggcttcag gctcggcgag caattgcagc agcggcggtc
     1681 ggggtgtggt caggcggaac tcgatcacct ccggcgtggt cgggttgatc tcctcgatcg
     1741 aatcgaacgc gtcgcggagg ggattgcggc tgtttggggc gatgatcgcg cgtgcccagc
     1801 gggctacttc ttcggacgtg acttgcttgc cgttggtcca ggccgcgcgg cgcaggcgga
     1861 agatcgcgct cagaccgtcg ctggtgatga cccagcgttg cgccagggca ggcgtgatct
     1921 gtccggcggc gtcataggcg accagcgtct cggcgactgc gccgagcagc acgcgttgcg
     1981 gcaggtcggc ctgcgtccga tttgggtcga ccaaggttgg cggcccgccg atcgcgctga
     2041 ctcgaatcgg gccctgatcc tcggcctggc cgcatgcagc cagcatcagc agggggagta
     2101 gccagcgctt cattgcgaca agctctatga ccgccatgtt gatccgccaa gcgctggctt
     2161 aatgcgtcct ttacttcata caactaagtc tttggcagat ggccctgact gcgcgcgatg
     2221 gtggcgagaa tgcgcccact ggacccgatc ggctgctggc cgaggcggcg cacgtcgcgc
     2281 gcaatgccga tgcgcggatc gccgcggcgc tcaatgacct gtttctgccc gatttcgttc
     2341 gccccacgga cagccagcgc gcggcgatgg cgaacatgct cgatcggctg gtgacggaca
     2401 tcgaccacga tctgcgtgcc gggatcatcg atcggctggg cgaagacgcc ccgcccgtgc
     2461 tcggcgtcac gcgcatcccg atcttgcgcc ctattttcga tcgcgccagc gtgctgcgcg
     2521 accgggaact cgtctcgctg ctcctcaccc gggcggaaga gacccgcatt tgccagtcga
     2581 ttcggcgcgt ggccgagatc gacccgggcc cggcgccgca catccggctc gatctgccgg
     2641 aagagctgga gacggcgctg ctgcgtgctg aaaaccgccg cagcggcgcg catggcgagc
     2701 ccaaccttac cgtccgcgac ctttccgccg atctgctcca caagctgctc tggtggggcg
     2761 cggcagccct tcgcgattat ctggagcgtt cgacgccgct cgacccgggc cgccgcgacg
     2821 aagccctgac ggccgtcgtg catgcgcgcc ttgctgcgca tgacgagggc cagacgctcg
     2881 aagccgccgc aatgcgcgcc gcgctcgcat tgaacacaga ggacgcgctg ctgttcgagc
     2941 tgttccgtgc cggccgcttc agcctgttcg tggcgctgct ggcggcgcgg gcgagaatcg
     3001 agttcatgcc ggctttcctg ctcgccgctg atcccggcat cggcgcgctg gcggtgctgc
     3061 tccgcgcagt cgatgtatcg acccaggtcg cggcccctat cctcctgcag atggcggcga
     3121 taaatcacct cagcgaagcc aagcttgagg aacgggtgaa cgattttctg gatctggacg
     3181 ccgctgccgc ccaaggcgcg gtgcgcccgt ggcggcttga gcgcgcgttc cgcactgcga
     3241 ttgcggacat cgggcgggag cggcggcaac gatgagcagc cttgcccatg gccgcatcga
     3301 ccgcgaaggc cgcctgatcg aggccgaacc cccgttgcgg cggctacagg aatccgctgg
     3361 cgccggcctc ggccagccta ttgccgtgcc gcagatcgcg accatggcgc gcctggcgca
     3421 gcggctcggc atcctggtct cgcgctgcgt gatcgctgcg gaaggcagcg acgatctcga
     3481 cctctgggtc gaggccaagc cggacagcga aggcgtagcg ctctcggtag gtggctgggc
     3541 acggcggccc gcgcgcgagc aggaagacaa gggcgagcgc atttacgatt tcatgcgctc
     3601 gcgcggcgat tggctctggg agaccgaccc ggcgctgcgg ctcgcctcgt tgggcttcga
     3661 gggcggcgag acaatggtcg gccaaccgct tgcccgcttg ttccagttcg tggaagccgg
     3721 cgaggacggg ctgccgatcc tggaagcgct ggcctcacgg gcgcgtttcg aaggacagga
     3781 agccgttgtc cgcacgacgg gcgagcgcgt gcgtctcagc gggctgccgc tgatcgacgg
     3841 cggcgggcgt ttcgcgggct atcgcggcag cgcattccgc atcgacggag actttgcggc
     3901 ctctgccggc gcggctgagg cggagggcga ggccgaagca gacgcgttca gcgcccggct
     3961 tgaacgggca ttgcgcgggc cgctgtcccg catcgtcgac caggccgaga cgatcggcgc
     4021 gcagcaggac ggcccgatcc gccgcgacta tgccgaatat gcgaacgaca tcgccagcgc
     4081 tggccgtcat ttgctcgggc tgatcggcga tctcgtcgac ctccaggcaa tcgagcgcga
     4141 cgatttccgc ccgcgcaccg aacggatcga cctcgccgcg ctcgcgcgcc gcgccgccgg
     4201 cctgctcaaa gtcgccgccg cggaccacgg cgtccggatc gacggacccg ggcccgacga
     4261 aaggctcgtc gcgatcggcg acgagggcag ggtggtccag atactcgtaa acctggtcga
     4321 caacgcaatc cgccactcgc cagacggcgc cgccgtctgg ctgcgcggcg aagcgcagaa
     4381 tgggcgtgcc atcctcgtcg tcgccgatca gggccctggc gtggcgtccc gcgaccaaga
     4441 ccgcattttc gagaaattca cgcggctcga tcccggcgac ggcgcgggca gcgggcttgg
     4501 gctttacatc gcccgccgcc tcgcccgcgc aatggccggc gacctcgtcg tcgacagcgc
     4561 gccgggccag ggcgcccggt tcatcctggc gctgcctgct gcctaatcaa gcttgcggat
     4621 cgtctcgtcc agccgcccga ccgtcaggcc aaatttcgag attgtcatgc ggttgagcgc
     4681 ggtgcggccg ccgggctgca ggtagatccg ctgatccgcg tcgacgccgc ccttcattgg
     4741 gtagcgaaga tggagcatgt tgccgcggat ctcgccggtg accggcccgg tcgcatcgct
     4801 caaggagcca aagacgcggc cccctcccgc cgaccggatg cgccattggc gggtttcggg
     4861 cgcgcggccc ccgcgcgcga cggtctgatc caggatcagg gtgccctcct gcgtcactcg
     4921 gccgcgtcct tcgacatgaa ccggctcggc ccgcttgagg acgaccttca gggtggcttc
     4981 gccacgcgtc cgtccggcga agaagaccgc cggatcgaac acgggttgag gagcaggcgc
     5041 cgcgctgtcc ggctggccgg ccgcgcagcc gatcagccca gcggcggcga gaaggaaaag
     5101 tttagcgctg gtcgagcgga acatagtcgc gctgtaccgg acccgtgtaa agctggcgcg
     5161 gacggccaat cttctggtcg gggtcggtga tcatctcatt ccactgcgcg atccagccga
     5221 ccgtacgggc gagcgcgaac agggcggtga acatcgacgt cgggaaaccg atcgccgaca
     5281 ggatcacgcc cgaatagaaa tcgacgttcg ggaacagctt cttctcgatg aaatagctgt
     5341 cgctgagtgc catttcctca agttgcaggg ccacctcgaa aaccggatcg ctgactttca
     5401 gcgcctcgaa cacctcgcgc accgtcttct gcatcaccgt cgcgcgcgga tcgtaatttt
     5461 tatagacgcg gtggccgaag cccatcaggc ggaacggatc gttcttgtcc ttggcgcgcg
     5521 cgatatattc gggaatgcgc tcgggccgcc cgatttcgcg cagcatgttg agcgccgcct
     5581 cgttggcgcc gccatgcgcc gggccccaaa gacacgcgat gcccgcggca atgcaggcaa
     5641 aggggttggc gcccgacgag ccggccaggc ggacggtcga ggtggacgca ttctgctcgt
     5701 gatcggcatg aaggatgaaa atgcggtcca tcgcccgctc gaccaccgga ttcacgacat
     5761 agggctcggc cgggacgccg aacgtcatgc gcaggaaatt gccggtgtag ctaagcgagt
     5821 tgtccgggta gaggaagggc tggcccattg catatttgta agccgctgcc gcaatcgtgg
     5881 gcatcttggc gatcagccgg tggctggcga tcatccgctg ctgcggatcc gtaatgtccg
     5941 tcgaatcatg gtagaaggcg gaaagcgcgc cgacgacgcc acacatgatg gccatcgggt
     6001 gcgcatcgcg gcggaagccg cgatagaagg ttgcgagctg ctcgtgcagc atcgtatggc
     6061 gcgtgatcgt gtaggtgaac ttcgtcagct cgtcctgctt cggcaactcg ccgttcagca
     6121 gcaggtagca tacttccatg aaggtcgatt gttcggccag ctggttgatc ggatagccgc
     6181 gatggaggag cacgccttcg tcgccatcga tataggtgat ggccgattcg cagctggccg
     6241 tggaggtgaa gcccggatcg taagtgaagg cgccggtctg cgcataaagt ttgcgaatgt
     6301 cgatcacgtc agggccgacg gaccccttca ccaccgggaa ttcgcagtcc ttccccccga
     6361 gcgccagctt ggccttgtta tccatcagtc ttgctcctca atcgcatggc gccgcggcgg
     6421 cgcccggttc cttgcaaagg tccgccagcc gcgccagcga ctcatcgctt cccaacaaga
     6481 tcagcacatc gaatatgccc ggagaggtgg tccgcccggt aagggcggcg cgcagcggtt
     6541 gcgcgacctt tccgagacca attccggtct cctccgcaac gcgccgcacc gcttcttcga
     6601 cctgctcgcc cgtccagtcg gacacggagg caagcacgtc atgggttttt cccagaagcg
     6661 ttagcgcctc gccttctagc agcgccgcgg ccttctcgtc gagagcgagc gggcgggtgg
     6721 cgaacaggaa tgtcgcgccc tcggcgatct cgttgagatt ctttgcgcga ggcttgagtt
     6781 ccggcatcgc gcgcgccagc agcgcttgtt ccgaggcgga cagctcgcgc ccgatcagcg
     6841 tttgcacgcg aggcgccgcc agcgctgcaa gccgcgcgtc gtccgcctcg cggagataat
     6901 ggccgttcag attttcgagc tttttcaggt cgaagcgaga aggcgaacgg ccgacgccac
     6961 cgatgtcgaa ccattcgacc gcctgttcgc gcgaaatgat ctcggcgtcg ccatgtcccc
     7021 agccgaggcg caggaggtaa ttggacaagg cctccggcag aatcccgagc tcgtcgcgat
     7081 aggcgtccac gccgagcgcc ccgtgccgct tggagagctt ggctccgtcc gcgccgtgga
     7141 tcagcgggat gtgcgcatag gctggctccg gccagcccat ggccttgatg atgccgagct
     7201 ggcggaaggc gttgttcaga tggtcgtcgc cgcggatcac gtgcgtgacg cccatgtcgt
     7261 aatcgtcgac cacgacggca agcatgtagg tgggggtgcc gtcggagcgg aggaggatca
     7321 tgtcgtccag ctcgctgttt tggaccgtca ctcggccctg gacgagatcg tcgatcactg
     7381 tctcgccctc gcgcggggct ttcagacgga cggcataagg ctggccctcc ggccagtcgg
     7441 tgcggtttcg ccagcggcca tcgtatcgaa gcggctgttt cgcttcgcgc tgggcctcgc
     7501 gcagtgcggc cagctcctcc gacgtcgcat agcagcgata ggcatggccg ctttcgagaa
     7561 gctggtttgc cacctccaca tggcggggag cgcgcgccga ttgatacacg acttcgccgt
     7621 cccaggcgag gtcgagccaa gtcatgccgt ccaggatcgc atctatcgct tcctgcgtcg
     7681 agcgcgcctt gtcggtgtct tcgatccgca gcaggaactg gccgccatga tggcgcgcga
     7741 agagcaggtt gaagagcgcg gtgcgcgcgc cgccgatatg gagaaagccg gtcggcgatg
     7801 gggcaaaacg ggtgacgacg ctgcttgcgc tcacgcgctg aagctcccta cgctgtggct
     7861 gatatgaact tgggtgccga cgcccctagc atgccgttcg gcccacgcaa atggggagcc
     7921 ttggtcgcgc ctgcgctcga tgggatcgag cggtggctgg aggccgagcg cgatcaatta
     7981 ccgctctggc taccggtgat gctggctgcc ggcatcgcgg gctggttcct gttgccggac
     8041 cggtcaagct ggctcgcgct catcgcggcg gcgctgggcc tggcgctggc cggcctcgcg
     8101 atcgggcctg ggcgtcgggc cgggtttgca acgcaggtcg ccggactcgc gatcgcgagc
     8161 ggctgtgcgc ttgtgtgggc gaaggcggag tgggtggcag cgccggtgct gacgcggccg
     8221 atgatcgcga gcttcactgc cgatgtcgag
//
LOCUS       DASQVK010000418         2160 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_154037,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000418 DASQVK010000000
VERSION     DASQVK010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2160
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154037"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..935
                     /locus_tag="VE567_09105"
     CDS             <1..935
                     /locus_tag="VE567_09105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010545560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HYZ49035.1"
                     /translation="PVQLLFTGHYDTVFGADHSFQTLRWLDDGRLNGPGVADMKGGLA
                     LMLAALKAVETTPAAARIGYQVLIDSDEEVGSPSSAALIARVARGKAAAFTYEPALPD
                     GTLAGARAGSGNFSIVIAGRSAHAGRNPQEGRNAVLAAAELALRLEKAIGPGLSVNPA
                     KIDGGGPSNVVPDHAVLRVNFRPASPADEARARAYLDEAVAVIAVERDVRIQVHGGFG
                     RPPKPLDPAAERLFGLVKHCGADLGLDIGWKPTGGVCDGNNIAACGVPVVDTMGARGG
                     AIHSEEEYLIPESLPERAKLSTLAILRVAERGRP"
     gene            932..1951
                     /locus_tag="VE567_09110"
     CDS             932..1951
                     /locus_tag="VE567_09110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine N-succinyltransferase"
                     /protein_id="HYZ49036.1"
                     /translation="MSFVLRPAALDDLEPLYELAKLTGGGFTNLPPNRDTLTTKLQRS
                     VEALARADDEHRDDLFVFVLENSETDQVRGTCQIFSMIGQTWPFYSYRIGTLTQVSKE
                     LNRTFRADMLTLSTDLEGASEVGGLFLHPRERAGGLGMLLARSRYLFMKQHRARFSDR
                     TIAELRGVIDEAGGSPFWDGLAGKFFGMSFQEADEFNAVKGNQFIADLMPKHPIYTAM
                     LPESARAVIGVPHPSGRAAMRMLEHEGFHHEKYIDIFDGGPTMVAHTDRIRSIQDAAE
                     SRVARIAENEGERRLATAGRLANWRAAYSQIEILGDGQVAIDPEGARLLNLSEGDAVM
                     HVGRA"
     gene            1948..>2160
                     /locus_tag="VE567_09115"
     CDS             1948..>2160
                     /locus_tag="VE567_09115"
                     /EC_number="3.5.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006833702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009015 - N-succinylarginine dihydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006525 - arginine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-succinylarginine dihydrolase"
                     /protein_id="HYZ49037.1"
                     /translation="MNLVEINFDGIVGPSHNYAGLSLGNLASAKNANQTSYPRAAALQ
                     GLAKMRHNVRLGLAQGLLLPHPRPDQD"
BASE COUNT          361 a          758 c          698 g          343 t
ORIGIN      
        1 cgcccgtgca gctcctcttt accggccatt atgacacggt gttcggcgcc gatcattcct
       61 tccagaccct ccgctggctt gacgatggcc gcctgaacgg ccccggcgtg gccgatatga
      121 aaggcgggct cgcgctgatg ctggcggcgc tgaaagccgt cgaaaccacg cccgccgccg
      181 cgcggatcgg ctatcaagtg ctgatcgaca gcgacgagga agtcggctcg ccatcctccg
      241 cggcgctgat cgcccgggtg gcacgcggca aggcggcggc gttcacgtac gaacccgccc
      301 tccccgacgg cacgcttgcc ggtgcgcgcg cgggctcggg caatttctcg atcgtgatcg
      361 ccggccgcag cgctcatgcc gggcgaaacc cgcaggaggg ccgcaacgcc gtgctggccg
      421 cggccgagct ggcgctccgg ctcgaaaagg cgatcgggcc gggcctgtcg gtcaacccgg
      481 cgaagatcga cggcggcggc cccagcaatg tcgtgcccga tcacgccgtg ctccgggtca
      541 atttccgccc cgcctcccct gccgacgaag cccgggcccg cgcatatctc gacgaagccg
      601 tcgccgtcat cgccgtcgag cgcgacgttc gcattcaggt ccatggcggc ttcgggcgcc
      661 ctcccaagcc gctcgatccc gccgcggagc ggctgttcgg gctggtcaaa cattgcggcg
      721 ccgatctcgg cctggacatc ggctggaagc cgaccggggg cgtgtgcgac ggcaacaata
      781 tcgcggcctg cggcgtgccc gtggtcgata cgatgggcgc ccgcggcggc gccattcact
      841 ctgaggagga atatctgatc ccggaatcgc tgcccgagag agcaaagctc tccaccctcg
      901 ccattttgcg cgtggcggag cggggccggc catgagcttc gtgctgcgcc cggcggcgct
      961 cgacgatctc gagccgctct acgagcttgc aaagctgacc ggcggcggct tcaccaacct
     1021 gccgcccaac cgcgacactc tcactaccaa gctgcaacga tccgtcgagg ccctcgcccg
     1081 cgctgatgac gagcatcgcg acgacctgtt cgtcttcgtc ctcgaaaaca gcgagacgga
     1141 ccaggttcgc ggcacttgcc agatcttctc gatgatcggc cagacatggc cattctacag
     1201 ctaccgcatc ggtacgctca cccaggtgtc gaaggagctg aaccgcacgt tccgcgcgga
     1261 catgctgacg ctctcgactg acctcgaagg cgcgagcgaa gtgggcgggc tcttccttca
     1321 cccccgtgag cgcgccggcg gtctcggcat gctgcttgcc cgcagccgct atctgttcat
     1381 gaagcagcac cgcgcacgct tttccgaccg cacgatcgcg gagctgcgcg gcgtcatcga
     1441 cgaagcgggc ggctcgccct tctgggacgg gctcgccggt aaattcttcg gcatgagctt
     1501 tcaggaagcc gacgagttca atgcggtgaa gggcaaccaa ttcatcgccg acctcatgcc
     1561 caagcatccg atttacacgg cgatgctgcc cgagtccgcc cgcgccgtga tcggcgtccc
     1621 gcacccgagc ggccgcgcgg cgatgcggat gctggagcat gaaggcttcc accacgagaa
     1681 atatatcgac attttcgacg gcggcccgac gatggtcgcg cacaccgacc gcatccgctc
     1741 gatccaggac gccgcggagt cgcgcgtcgc gcgcatcgcg gagaatgagg gggagcgccg
     1801 cctcgccacc gccgggcggc tcgcgaactg gcgcgcggcc tattcgcaga tcgagatact
     1861 cggcgacggc caggtcgcga tcgatccgga aggcgccagg ctgctgaacc ttagcgaagg
     1921 cgatgccgtc atgcatgtgg gccgggcatg aacctcgtcg aaatcaactt cgacgggatt
     1981 gtcgggccca gtcacaatta tgccggcctc agcctgggca acctcgcttc ggcgaagaat
     2041 gcgaaccaga ccagctatcc gcgcgcggcg gcgctgcagg ggctggccaa gatgcgccac
     2101 aatgtgcggc tgggcctcgc gcaagggctg ctgctgcctc atccgcggcc cgatcaagat
//
LOCUS       DASQVK010000419         2322 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_313904,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000419 DASQVK010000000
VERSION     DASQVK010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2322)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2322)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2322
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313904"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1255
                     /gene="ppk1"
                     /locus_tag="VE567_09120"
     CDS             <1..1255
                     /gene="ppk1"
                     /locus_tag="VE567_09120"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009358 - polyphosphate kinase complex
                     [Evidence IEA];
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006799 - polyphosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HYZ49038.1"
                     /translation="GGLLGLGDLEALVEDDRPDLKWDPFSPRFPERIREYGGDCFAAI
                     KAKDIVVHHPYETFDVVLAFLNQAAADPDVVAIKQTLYRAGKQSAVIRALIDAAEAGK
                     SVTAVVELKARFDEEQNLMWASALERAGVQVVYGFIEWKTHAKVSMVVRREGDGYRTY
                     CHFGTGNYHPITARIYTDLSFFTADPRIGRDAAQLFNYTTGYVEPSQLELLTISPLHL
                     RERLCGLIHDEIEHARAGRPASIWAKMNSLVDPAMIEKLYEASAAGVHVDLVVRGICC
                     LRPGVPGLSENIRVKSIVGRFLEHSRIFAFGNGRALPNDRAKVFISSADWMPRNFDRR
                     VEYMLPIVNPTVHDQVLDQVMVANLIDNEQSWELQPDGTYVREKPGDRPFNLHRYFMT
                     NPSLSGRGKSLATSDEVPKLSLRRR"
     gene            1252..>2322
                     /locus_tag="VE567_09125"
     CDS             1252..>2322
                     /locus_tag="VE567_09125"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019367891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006793 - phosphorus metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HYZ49039.1"
                     /translation="MTDTAVLIRPEAEAPSTQSVRQGIIDIGSNSIRLVIYGGPPRVP
                     ATLFNEKVMAGLGRTLQSTGAIPARSLDAAVRALARFKRLADVMRVDRLRTVATAAVR
                     DASNGADLLDRAAELGLAVELLSGEQEAEAAALGVLSAIPDADGIVGDLGGGSLELTR
                     VAGGEVLERASFPLGVLRLAALDGSRRAIDAKVAEQLTRAPWLKRAKGLPLYLVGGSW
                     RALARVDMALSAYPLPIVHQYSMAPSSAARLARVIAQTSRDELRMIPTLSASRIATLG
                     EASALLAALVRELGSGRLIVSAYGLREGLLYAAMPKPLRREDPLVAACREEAQVQGRF
                     PEHGELLDRWIAPLFPQNTDARL"
BASE COUNT          359 a          818 c          757 g          388 t
ORIGIN      
        1 cggcgggctg ctcggcctcg gcgaccttga ggcattggtc gaggacgacc ggcccgatct
       61 caaatgggac ccgttttcac cgcgcttccc cgaacgcatt cgcgaatatg gcggagattg
      121 tttcgcggcg atcaaggcca aggacatcgt cgtccaccac ccgtacgaga cgttcgatgt
      181 cgtgctcgcc ttcctcaacc aggcggccgc ggacccggac gtggtcgcga tcaagcagac
      241 gctctaccgc gccggcaagc aatcggcggt gatccgcgcc ctgatcgacg cggcggaagc
      301 gggcaaatcc gtcactgccg tagtcgagct caaggcccgc ttcgacgaag agcagaatct
      361 gatgtgggcc tcggcgctcg agcgcgcggg cgtccaggtc gtctatggct tcatcgagtg
      421 gaagacccac gccaaggtct cgatggtcgt gcgccgcgaa ggcgacggct atcgcaccta
      481 ctgccatttc ggcaccggca actaccaccc gatcactgcc cggatttaca ccgatctcag
      541 cttcttcacc gccgatccgc gcatcgggcg cgatgcggcg caattgttca attacacgac
      601 gggctatgtc gagccgtccc agcttgagct gctcaccatt tcgccgctgc acctgcgcga
      661 gcggctgtgc gggctgatcc atgacgagat cgagcatgcg cgcgccggcc ggccggccag
      721 catctgggcc aagatgaact cgctcgtcga tcccgcgatg atcgagaagc tctacgaggc
      781 aagcgcagcc ggtgtgcatg tcgatctggt ggtgcgcggc atttgctgcc tgcggccggg
      841 cgtgccgggc ctgtcggaga atatccgcgt caagtcgatc gtcggccgct tcctggagca
      901 cagccgcatc ttcgcgttcg gcaatggccg cgcgctgccc aacgacaggg ccaaggtctt
      961 catttcctcg gccgactgga tgccgcgcaa tttcgatcgg cgcgtcgaat atatgctccc
     1021 gatcgtgaac ccgaccgtgc acgatcaggt tctcgaccag gtgatggtcg caaacctcat
     1081 cgacaatgag cagagctggg agctgcagcc ggacggcacc tatgtgcgcg agaagcccgg
     1141 cgaccggccg ttcaacctgc atcgctattt catgaccaac ccatccctgt ccggccgcgg
     1201 caagtcgctc gcgaccagcg atgaggttcc caagctcagc ctgaggcgcc ggtgaccgat
     1261 actgccgtcc tgatccgccc cgaggccgag gcgccgtcca cccagtcggt gcgccagggc
     1321 atcatcgaca tcgggtccaa ctcgatccgc ctcgtcattt atggcgggcc gccgcgcgtg
     1381 ccggcaacct tgttcaacga aaaggtcatg gcggggctgg gccgcactct gcagtccacc
     1441 ggcgcgatcc cggcgcgctc gctcgacgcc gcggtccgcg cgctcgcgcg cttcaagcgg
     1501 ctggcggacg tgatgcgggt cgaccggctg cgcaccgtcg ccactgccgc cgtccgcgat
     1561 gcgagcaacg gcgcggacct gctcgaccgc gccgccgagc tcggcctcgc ggtcgagctc
     1621 ctctccggcg agcaggaagc ggaagccgcc gcgcttgggg tcctctccgc cattcccgac
     1681 gccgacggca ttgtgggaga cctgggcggc ggcagcctgg agctgacgcg cgtcgccggc
     1741 ggcgaagtgc tggagcgtgc ttccttcccc ctgggcgtgc tgcggctcgc agctctcgac
     1801 ggctccaggc gtgcgatcga cgccaaggtg gcggagcagc tcacccgcgc gccctggctc
     1861 aagcgcgcga aaggtctgcc gctttatctg gtcggcggct cgtggcgcgc gctggcgcgc
     1921 gtcgacatgg cgctctccgc ctatccgctg ccgatcgtgc atcaatatag catggcgccc
     1981 agctcggccg cgcggctggc ccgggtgatc gcgcagacca gccgcgacga gctgcggatg
     2041 attcccacgc tctccgcctc ccgcatcgcg actttgggcg aagcctccgc gctgctcgcc
     2101 gcccttgtgc gggagctcgg cagcggccgg ctgatcgtct ccgcctatgg cctgcgcgaa
     2161 gggctgttgt acgccgcgat gccgaagccg ctgcgccgcg aagacccgct ggtcgccgcc
     2221 tgccgcgagg aagcgcaagt gcagggccgc ttccccgaac atggcgagct gctcgaccgc
     2281 tggatcgcgc cgctgttccc gcagaacacg gacgcgcgcc tg
//
LOCUS       DASQVK010000420         2761 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_407137,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000420 DASQVK010000000
VERSION     DASQVK010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2761
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407137"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..406)
                     /locus_tag="VE567_09130"
     CDS             complement(<1..406)
                     /locus_tag="VE567_09130"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011444591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HYZ49040.1"
                     /translation="MRLAAKTPADLIIRPRDRRFGRGARQQRWWHGGDPVATAFHNAL
                     SITFPRGEAFFIESVKAFRDGAPPKLAEEIKAFTMQEVMHSREHVAFNKRVVDMGYDV
                     SRLEQAVTESLELTKGRPQILNLAVTMALEHYT"
     gene            510..1097
                     /locus_tag="VE567_09135"
     CDS             510..1097
                     /locus_tag="VE567_09135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017670648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HYZ49041.1"
                     /translation="MPLAKRRLSPEASRSAALEAARDLLVEAGPQAVTLKAVAGRMGR
                     THANLLHHFGSAAGLQKALAATMADRITRQIGEAVLKARAGQGSPRAIVDMTFDAFDK
                     GGGALASWAILTGHEDALDPILQAIHRLMDELSEGTMRDEDMRRETLDLVLSAMGDTL
                     LGEAMANALDLPRDTARELATAKLEANREQRLQAE"
     gene            1164..2213
                     /gene="obgE"
                     /locus_tag="VE567_09140"
     CDS             1164..2213
                     /gene="obgE"
                     /locus_tag="VE567_09140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007405354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HYZ49042.1"
                     /translation="MHFLDQAKIFVRSGAGGPGAVSFRREKFIEYGGPDGGDGGKGGD
                     IVFEAVAGLNTLIDFRYTQHFRAPRGQGGAGANRTGAGGRDLVIKVPVGTQILADDED
                     RTLLADLTKVGERIVFLRGGDGGRGNASYKSSTNRAPRQHGTGWPSEEAWVWLRLKLL
                     ADAGLVGLPNAGKSTFINAVTNAQAKVGEYAFTTTRPQLGVVRHKGREFVIADIPGLI
                     EGAAEGAGIGDRFLGHIERCRVLLHLVDANDDSVATSYRVVRDELEAYGAGLADKPVV
                     VALNKIDTLDDELIAALSAELEEASGQPVIPISGASGIGVDWALDKLLEAIGPEAAPI
                     SEDDEGEDAIEWSPV"
     gene            2625..>2761
                     /locus_tag="VE567_09145"
     CDS             2625..>2761
                     /locus_tag="VE567_09145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011542504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HYZ49043.1"
                     /translation="MPLFPPPSCPRLVVKIGSALLVDVDGGVRREWLAGIAADVAARG
                     R"
BASE COUNT          510 a          894 c          911 g          446 t
ORIGIN      
        1 ccgtataatg ctccagcgcc atggtgacgg cgaggttcag gatctgcggc cggcccttgg
       61 tcagttccag cgattccgtt accgcctgct cgagccgcga aacgtcatag cccatgtcga
      121 ccacccgctt gttgaaagcg acatgctcgc ggctatgcat cacttcctgc atcgtgaagg
      181 ccttgatctc ttccgcgagc ttcggcggag cgccgtcgcg gaacgccttc acgctttcga
      241 taaagaacgc ctcgccgcgg gggaaggtga tcgacaatgc gttgtggaag gcggtcgcga
      301 cgggatcgcc tccgtgccac cagcgctgct ggcgcgcacc ccggccgaac cgacggtctc
      361 gcggcctgat gatcaggtcg gccggagtct tggcggcgag ccgcatcgaa cgagtctccc
      421 tcccttgcat aagagcaaat actgacagga atgtcgataa actttgggga tggcgcgcca
      481 gggaattcgc gctaaccaga gaaagtctta tgccgctcgc caaacgccgc ctttcgcccg
      541 aagccagccg atccgccgcg ctcgaagccg cgcgcgactt gttggtcgaa gccgggcccc
      601 aggccgtgac gctcaaggcc gtcgcaggac ggatgggccg cacccacgcc aatctgcttc
      661 atcatttcgg ctcggcggcc gggctgcaaa aggcgctcgc cgcgacgatg gccgaccgca
      721 tcacgcgcca gatcggcgaa gcggtgctga aggcgcgcgc cggccagggc tcgccccgcg
      781 cgatcgtgga catgacgttc gatgctttcg acaagggcgg cggcgcgctc gcgtcctggg
      841 cgatcctgac cggccatgag gatgcgctcg accccatcct gcaggcgatt caccgtctga
      901 tggacgagct cagcgaaggg accatgcgcg atgaagatat gcgccgcgag acgctcgacc
      961 tcgttttgag cgcgatgggc gatacgctgc tgggcgaagc catggcgaac gcgctcgacc
     1021 ttccccgcga cacggcccgc gaactggcga cagccaagct ggaagcgaac cgggaacagc
     1081 gcctgcaggc ggaatagcgc aaaggcgccc ccttgggcag tgcgcggtag cgcaaagcgc
     1141 cctcctcccc tatctcctcg caaatgcatt tcctcgatca ggcgaaaatc tttgtccgct
     1201 cgggcgccgg cggccccggc gcagtcagct ttcgccgcga aaaattcatc gaatatggcg
     1261 ggcccgatgg cggcgacggc ggcaagggcg gcgacatcgt gttcgaagcg gtcgccggcc
     1321 tcaatacgct gatcgacttt cgctacacgc agcatttccg cgccccccgc ggccagggcg
     1381 gcgctggcgc gaaccggacc ggagcggggg gcagggacct ggtgatcaag gtgccggtcg
     1441 gcacgcagat cctcgccgat gacgaggacc gcaccttgct cgcagacttg accaaagtgg
     1501 gcgagcgcat cgtgttcctg cgcggcggcg atggcgggcg cggcaatgcc agctacaaaa
     1561 gctcgaccaa ccgcgccccg cggcagcacg gcaccggctg gccaagcgag gaagcctggg
     1621 tctggctgcg gctgaaattg ctcgccgacg ccgggctggt gggccttccc aatgcgggca
     1681 aatcaacctt catcaacgcc gttaccaacg cccaggcgaa ggtcggcgaa tatgctttca
     1741 ccaccacgcg gccgcagctc ggcgtggtcc ggcacaaggg ccgcgagttc gtgatcgccg
     1801 acattcccgg cctgatcgaa ggcgcggccg aaggcgccgg catcggcgac cgcttcctgg
     1861 gccatataga gcgctgccgc gtgctgctcc acctggtcga cgccaatgac gatagcgtgg
     1921 cgacgagcta ccgggtggtt cgcgacgagc tcgaagccta tggcgcgggg ctggccgaca
     1981 agccggtggt ggtcgcgctc aacaagatcg acacgctcga cgacgaactg atcgccgccc
     2041 tctccgccga gctggaggaa gcgagcggcc agcccgtgat cccgatctcc ggcgccagcg
     2101 gcatcggcgt cgactgggcg ctcgacaagc tcctcgaagc gatcggcccg gaagcggcac
     2161 ccatcagcga agacgacgaa ggcgaagacg caatcgaatg gtcgccggtg taggggccag
     2221 gagtccgcag acgagccgtt gcggacattg tggcttggct acgcgagatg gaaaataatc
     2281 agcctgattg tagctgcctc ggcatcgcct gcgttctgcc ccgacgttcc cgggcgaccg
     2341 tgaaattggc gctctgggga cgctgagatc gcacaagact gctacactgc ggaggatgtg
     2401 gaagaccctg aacggttttt cggaggagca gcctctgagc aagaatgcaa tcaactggta
     2461 tcgctgccag aaatgactcc acccgaatta tttcgcgcgt gactcccgct taaattcacg
     2521 aaaatggcgg ctcaccctaa gacgattgtg aacttgagga acgaaaatcg tgcttttcag
     2581 acgtcggcgt tggcggaccg ggcggggagc gttaacgagc tccaatgccg ctcttccccc
     2641 ctccctcctg cccgcgcctc gtcgtgaaga tcggctcggc gctgctcgtc gatgtggatg
     2701 gcggggtgcg gcgggagtgg ctggccggga ttgcggcgga cgtcgccgcg cggggccggg
     2761 a
//
LOCUS       DASQVK010000421         2114 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_92205, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000421 DASQVK010000000
VERSION     DASQVK010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2114
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92205"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2114
                     /locus_tag="VE567_09150"
     CDS             <1..>2114
                     /locus_tag="VE567_09150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49044.1"
                     /translation="VSIGIAESGARLTIEKGARLDMGARRTQAAEAAGLPGARLIAET
                     VKAPGTLADTTAYRLVEADSGGLLTLRAPLVGGGANMVDISIGAPTSISGAREVQIEA
                     FRRYDLDQMINSMSVPGLDYNSDGSGLQLDPTANFQARDENNQPTPYAGNFLSADFVT
                     EEGFRSIPNFIRTFRASASDGTSFEGYRVRPGVELVTTQSLSLVSQWNLAAADIDFEG
                     AFAAGVVEKLDKLGHRLTSYGLTQAGDAYYSVVAGREGELLDRFANFYYRVDGSARGE
                     APVLRFRTGGNLRIERTINDGFFVFRDRSDQAYVDYQLGGGVRHYMPAFQLACGVVAD
                     GNCSGLATFGDNVPNSERSARSVRVNIDNVLRGLPLDTVGVPAPLAPEANSPAALGTQ
                     ADPLTGDFVGAPLEFGELFPLLPGNVAMRSSDISLVGGATIGNGYSANPDYTFASSKA
                     DVVVTDARAEADGSETRWSYRLQASPAVPVIAGDQLVFRFFKQQDGQPIFFDLNDFLN
                     QDRGGTDYGIDELTANTYAVLNWGAAGSDGSNPAIAPAQAFFAPLGRTFLGSAKRPTG
                     VVAPLGEVLRFLEGYEADYLRDLYAGLFKQQLSNPLGPISFDPTARAQVQTVVRTGAG
                     RISTIAARDADLRDGTQAVYRTNDGTLVPRNAGGPSPEQQQVGGTSIYSAGRRIAQEA
                     IQARLPNGQVTRVDLTSGFFNSG"
BASE COUNT          351 a          709 c          695 g          359 t
ORIGIN      
        1 gtcagcatcg gcatcgctga aagcggcgcc aggctgacga tcgaaaaggg cgcccggctc
       61 gacatgggcg cgcgccggac ccaggcggcg gaggcagcgg gactgcccgg cgctcgcctg
      121 attgccgaga ccgtcaaagc gcccggcact ttggcggaca cgacagcata tcggctcgtg
      181 gaagccgaca gcggcggcct gctgaccctt cgcgccccgc tggtcggcgg gggcgcgaac
      241 atggtcgaca tcagcatcgg cgctccgacg tccatctcgg gcgcgcgcga ggttcagatc
      301 gaggcgttcc gccgctacga cctcgatcag atgatcaatt ccatgtcggt cccggggctc
      361 gactacaaca gcgacggctc ggggctgcag ctcgatccga ccgccaattt ccaggctcgc
      421 gacgagaata atcaaccgac gccttatgcc ggcaacttcc tctcggccga tttcgtgacg
      481 gaggagggct tccggtccat tccgaacttc atccggacgt tccgcgcctc ggcgagcgac
      541 ggaacgtcgt tcgagggcta tcgcgtgcgg cccggagtcg agctggtcac gacccagagc
      601 ctgtcgctgg tcagccaatg gaatctcgcc gccgcggaca tcgatttcga aggcgctttc
      661 gcagccgggg tcgtcgagaa gctcgacaag ctcggccatc ggctcacttc ctacggcctc
      721 acccaggccg gggacgcgta ttacagcgtg gtcgccggac gcgagggcga gctgctcgac
      781 cgctttgcca acttctatta ccgcgtcgac ggcagcgcgc ggggcgaggc cccggtcctc
      841 cgtttccgca ctggcggtaa cttgcgcatc gagcgcacga tcaatgacgg cttcttcgtg
      901 ttccgcgacc ggtccgacca ggcctatgtc gattaccagc tgggcggcgg cgttcgccat
      961 tacatgcctg ccttccaatt ggcgtgcggc gtggtggccg atgggaattg ttcggggctc
     1021 gcgacgttcg gcgacaatgt tcccaacagc gaacgcagcg cgcgcagcgt tcgggtgaac
     1081 atcgacaatg tgctgcgcgg gctcccgctc gacaccgtcg gcgtgccggc gccgcttgca
     1141 ccagaggcga acagcccggc agcgctcggc actcaggccg acccgctcac gggcgatttc
     1201 gtcggcgccc cgctcgaatt cggcgagctg tttccgctcc ttcccggcaa tgtggcgatg
     1261 cgctcgagcg atatcagcct ggtcggcggc gccacgatcg gcaatggtta ttccgccaat
     1321 cccgattaca cgttcgcaag ctccaaagcc gacgtggtcg taaccgacgc gagagcggag
     1381 gcggacggat cggagacgcg ctggtcctat cggctgcagg cctcaccggc ggtgccggtc
     1441 atcgccggcg accagctggt gttccgcttc ttcaagcaac aggacggcca gccgatcttc
     1501 ttcgacctca acgatttcct gaaccaggat cgcggcggca ccgattacgg catcgacgag
     1561 ctgacagcca acacctatgc ggtgctgaat tggggggcgg cgggctcgga cgggtcgaac
     1621 ccggcgatcg ccccggcgca ggcctttttc gcgccgcttg gccgtacctt ccttggctcg
     1681 gccaagcggc cgaccggggt ggtcgcacca ctgggcgaag tgctccggtt cctggagggc
     1741 tatgaggccg attatctccg cgacctctat gccggcctgt tcaagcagca actgtcgaat
     1801 ccgttggggc cgatatcctt cgatccgacg gcgcgtgccc aggtgcagac ggtcgtccgc
     1861 accggggcgg gacgcatctc gacgattgct gcccgcgatg cggaccttcg cgacggcacg
     1921 caggccgttt accggacgaa cgacggcacg ctggtgccgc gcaacgctgg cggaccgagc
     1981 cccgaacagc agcaagtggg cggcacgtcc atctattctg cgggacgcag gatcgcgcag
     2041 gaggcgatcc aggcgcggct gcccaatggc caagtcacgc gtgtcgacct gacgagcggc
     2101 ttcttcaact cagg
//
LOCUS       DASQVK010000422         2924 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_344710,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000422 DASQVK010000000
VERSION     DASQVK010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2924)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2924)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2924
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344710"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..333)
                     /locus_tag="VE567_09155"
     CDS             complement(<1..333)
                     /locus_tag="VE567_09155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HYZ49045.1"
                     /translation="MTLRPSCAALLCFTATPALAQQGADIVVTGRGLAARPGDAAFDI
                     VTIDHDRIEANASERLESVLADIAGLQQFRRSDSRSANPTSQGISLRGIGGNASSRAL
                     LVLDGVPQA"
     gene            480..2207
                     /locus_tag="VE567_09160"
     CDS             480..2207
                     /locus_tag="VE567_09160"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYZ49046.1"
                     /translation="MAKPGPKTVRYGGNTSCVEVRTAAGTRLVIDCGTGAHELGQAIM
                     REDAPSRGHMLISHTHWDHIQGIPFFAPLFAPGHSWDIYAPQGFGESLKETLAGQMEY
                     TYFPVTPEAFGAQVHYHNLGEGSFTIDDLTIRTRYLNHPALTLAFRVDADGASFVYSC
                     DHEPHSRELAMGEGPIEGEDLAHAEFMEGADLIVHDAQYVAPEYHARQGWGHSTVEYA
                     LSIAKAARAGRIALTHHDPSRTDDQIDAYLALLRQEPGGPDILAAYEGMVIELGTQAA
                     QGAAATPNGASAIRNGPERDNARLLLIALDEGVADRVARAIADEPVELLSLAPDQAAG
                     QVAAFKPSLVLVDETAEAAFPDGICGVAADKVPCIVLGGSGAPMGCFSDRLEEPWSIE
                     YARTRIRTWLLRAECHWARPPMPEDEAERVGALRRLGILDTPPEERFDRHTRIAAALF
                     KVPIALVSLVDADRQWFKSCFGTDVCESSRETSFCAHAILSNDELLIVPDALQDDRFR
                     DNPMVSDGPRIRFYAGAVLHSPDGKRIGTVCILDVRPRNLSDEEKQLLRDVAAAVESE
                     IAQPRAKAA"
     gene            2215..>2924
                     /locus_tag="VE567_09165"
     CDS             2215..>2924
                     /locus_tag="VE567_09165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49047.1"
                     /translation="MNVVSAHRVKRARGDRADSARALLWQLIWIYQGGCAAAVAITFM
                     LVLLGLELTGYQWLLILLMTPVAVAIYNLVDVYVLRRNVQPVCAALRALDADEVPERT
                     VALGLVRALNLPYFSFLRVTFLHGPLVTILVYLVPTTANWLLDAGYEQWQIWAFCATT
                     LFFASPTHAIFEYFAVSRAIEPVILRLSRVMGGRLPPEYRRGLIAVRLKSKLLYLAIF
                     VTTLPLIFFAASMIFKVER"
BASE COUNT          488 a          966 c          964 g          506 t
ORIGIN      
        1 cgcctgcggc acaccgtcga ggaccagcag cgcgcggctc gacgcattgc cgccgatccc
       61 gcgcaggctg atgccctggc tggtcggatt ggcagagcgc gaatccgagc ggcggaattg
      121 ctgcagcccg gcaatatcgg cgagcacgct ttcgagccgt tcgcttgcgt tggcctcgat
      181 ccgatcgtgg tcgatcgtca cgatgtcgaa cgccgcgtcg ccgggccggg ccgcaaggcc
      241 gcgcccggtc acgacgatgt cggctccttg ctgggccagc gccggcgtcg cggtgaagca
      301 gagcagggcg gcgcaggacg gacggagcgt catcatgagg ctgcgactgc cgcattccga
      361 cggcgcgggc aatcggaagc gcttcatctc tctggacaag tcgggccgca aggctccaaa
      421 ccgaagcgaa agagagggga tgagcagtgc agatccggtt ctgggggacc cgcggatcct
      481 tggccaagcc agggccgaag acagtccgct acggcggcaa cacttcgtgc gtcgaggtcc
      541 ggacggccgc cggcacgcgt ctggtgatcg attgcgggac cggcgcacac gagctcggtc
      601 aggcgatcat gcgcgaagat gcgccctcac gcgggcacat gctgatcagc catacccatt
      661 gggatcacat ccaaggcatt ccctttttcg caccgctctt cgcccccggc catagctggg
      721 acatttatgc gccgcagggt tttggcgagt cgctcaagga aacgctcgcc ggccagatgg
      781 aatataccta tttccccgtc acgcccgagg cgttcggcgc ccaggtccac taccacaatc
      841 tgggcgaggg cagcttcacg atcgacgatc tgacgatccg gacgcgctac ctcaaccatc
      901 ccgcgctgac gctcgcgttc cgcgtggatg ccgacggtgc gagcttcgtc tattcctgcg
      961 atcacgagcc gcattcgcgc gagctggcga tgggcgaggg gccgatcgaa ggcgaagacc
     1021 tggcgcatgc cgagttcatg gaaggcgccg acttgatcgt ccacgacgcc caatatgtcg
     1081 cgccggaata tcatgcacgg cagggctggg gccacagcac cgtcgaatat gcgctgtcga
     1141 tcgcaaaggc cgcacgcgcc gggcggatcg cgctcactca ccacgatccc tcgcgcaccg
     1201 acgaccagat cgacgcctat ctcgcgctgc tccggcaaga gccgggcggc cccgatatcc
     1261 tggccgccta tgaaggcatg gtgatcgaac tcggaaccca ggcggcgcag ggggcggcgg
     1321 cgactcccaa cggcgcgagc gccatccgaa acgggccgga gcgagacaat gctcgcctgc
     1381 tgctgatcgc actggacgaa ggagttgccg accgggtcgc gcgggcgatt gccgacgagc
     1441 cggtggaatt gctcagccta gcgccggatc aggcggctgg ccaggttgcg gcgttcaagc
     1501 cttcgctggt gctcgtggat gaaaccgccg aagcggcgtt tcctgacgga atttgcgggg
     1561 tcgctgccga caaggtgccc tgcatcgtgc ttggcgggtc gggcgcgccg atgggctgct
     1621 tttccgaccg gctcgaggag ccctggtcga tcgaatatgc ccgcacgcgc atccgcacct
     1681 ggctgttgcg cgccgaatgc cattgggcgc ggccgccgat gccggaggac gaggcggagc
     1741 gagtcggagc gctccggcgg ctcggcattc tcgacacgcc gcccgaggag cggttcgacc
     1801 gccatacgcg cattgcggcg gcgctgttca aggtgccgat cgcgctcgtc agcctggtcg
     1861 atgccgaccg gcaatggttc aaatcctgct tcggcaccga tgtctgcgaa agctcccgcg
     1921 agacaagctt ttgcgcgcac gcgatcctgt ccaatgacga gctgctgatc gtccccgacg
     1981 cgctgcagga cgaccgtttc cgcgataatc cgatggtctc cgacggcccg cgaatccgct
     2041 tctatgccgg ggcggtgctg cattctccgg acggcaagcg gatcggaacc gtctgcatat
     2101 tggacgtccg cccgcgcaac ctgtccgacg aagaaaagca gctgctgagg gacgtcgccg
     2161 ccgcggtcga aagcgagatc gcccagccgc gcgccaaggc ggcctgaggc gcacatgaac
     2221 gtggtcagcg cccaccgagt gaagcgcgcg cgcggcgacc gcgcggacag cgcgcgcgca
     2281 ctgctgtggc agctgatctg gatctatcaa ggcggctgcg cggcggcagt cgcgatcact
     2341 ttcatgctgg tgctgctggg cctggagctg accggctatc aatggctcct catcctgctg
     2401 atgactccgg tcgccgtcgc catctacaat ctcgtcgacg tctatgtgct ccgcaggaac
     2461 gtccagcccg tctgcgcggc gctgcgggcg ctcgatgcgg acgaagtgcc ggagcggacg
     2521 gttgcgctcg gcctcgtgcg cgccctgaac ctgccctatt tctccttcct gcgcgtcacc
     2581 ttcctgcacg gcccgctggt cacgattctc gtctatctcg tgccgaccac agccaattgg
     2641 ctgctcgatg caggctatga acaatggcag atctgggcgt tctgcgcgac gaccctgttc
     2701 ttcgcttcgc cgacccacgc gattttcgaa tatttcgcag tcagccgggc gatcgagccg
     2761 gtgatcctga ggctcagccg tgtgatgggc ggccggctgc cgcccgagta ccggcgcgga
     2821 ctgatcgcgg tgcggctcaa gagcaaatta ctttatctcg ccatcttcgt gacgaccttg
     2881 ccgctgatct tcttcgcggc ctcgatgatc ttcaaggtgg agcg
//
LOCUS       DASQVK010000423         2548 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_28521, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000423 DASQVK010000000
VERSION     DASQVK010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2548
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28521"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..427
                     /locus_tag="VE567_09170"
     CDS             <1..427
                     /locus_tag="VE567_09170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010239742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HYZ49048.1"
                     /translation="PPPPPPPPPPPPPPPPPPPPPPAVVCTPGPYIVFFEWDKSDITP
                     EAASILDNAISAYQNCGNAQVMLAGYTDTSGTPRYNMGLSQRRADSVKAYMTSHGIAD
                     GVIQTQAFGETNLRVQTADGVRELQNRRVEITYGPGSGM"
     gene            553..1062
                     /locus_tag="VE567_09175"
     CDS             553..1062
                     /locus_tag="VE567_09175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006801 - superoxide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase family protein"
                     /protein_id="HYZ49049.1"
                     /translation="MIRSLLFLTLSVALAGAAQSASRPYARATLKAADGASRGAATLS
                     DTGRGLSVRVQAQGLAPGVHGIHVHTVGRCDPPDFQSAGAHWNPAGRQHGRDNPQGQH
                     RGDLPSVNISANGRGKLNTLIPGATLADLLDADGAALVIHANPDDYRTDPSGNSGGRI
                     ACGVIERSY"
     gene            complement(1059..>2548)
                     /locus_tag="VE567_09180"
     CDS             complement(1059..>2548)
                     /locus_tag="VE567_09180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYZ49050.1"
                     /translation="FFVYVLNFVDRQILSILAKDVKRDLGLNDADIGFLFGTAFGVFY
                     SLFGIPLGRLADNWHRVRLITVGLAIWSAMTAFSGLARNGAQLTLARIGVGVGEATAS
                     PCAYSLISDYFPREKRATALAIYSSGIFIGGGLSLFIGGAIVDSWNGAFPSGHWGLVG
                     WQVAFMAVGLPGLILAAIVATLREPLRGASDGIVMSPSDAPFRDFLGELVAIIPPLTL
                     IGAARRGARALLINLLALAVAALAIWLLSSATRNPAQWLAVCIGAYAVFSWAAALKSR
                     DAAAFKLIWGTPAFLYVSLGYGLISFVSYGVAAFGALYAETVLLQPKTEVGFYLGGGA
                     AAGGFLGIVLGGRIADWAKQRRAWGRVPVIMSGTLLPIPFLLYAYTTSSPLGFYIASF
                     MMSGLASAALGPAGATTQDLVLPRMRGTATATFFIATALVGLALGPYFAGFMSTATGG
                     NLRLGVLSLLMAAPISLVLLLLAWRTVPAAEASVLARAREAGEAI"
BASE COUNT          504 a          852 c          829 g          363 t
ORIGIN      
        1 gcctccgccg ccgccgcccc cgccgcctcc cccgccgccg cctcccccgc cgccgcctcc
       61 gccgccggcc gtggtgtgca cgccgggacc gtatatcgtg ttcttcgagt gggataagtc
      121 cgacatcacg ccggaagcgg cgtcgatcct cgacaacgcg atttcggctt atcaaaactg
      181 cggcaacgct caggtcatgc tggccggcta caccgacacg tcgggtacgc cgcgctacaa
      241 tatgggcctg tcccagcgcc gtgcggactc ggtgaaggcc tatatgacca gccacggcat
      301 tgccgacggc gtcatccaga cgcaggcctt tggcgagacc aatctgcgcg tgcagactgc
      361 cgatggcgtc cgcgagctgc agaaccgccg cgtggaaatc acctacgggc ctggctcggg
      421 catgtaagcc cggcctcagg ccaactgatg agggccggtc ggcaacgacc ggcccttttc
      481 ttttgagcag ccttccttgt atggaaccgc tgacggttgc tacgcatcag gactgatcag
      541 tcggaggtcc agatgatccg ttcacttctc ttcctcacgc tctcggtcgc actcgcagga
      601 gcggcgcagt cggcaagtcg gccctatgcg cgtgcgacct tgaaggctgc ggacggagcc
      661 tcgcgtggag ctgctacttt atccgacacc gggcgcggcc tcagcgtccg tgtgcaagcg
      721 caggggcttg cgcctggcgt gcacggcatc cacgttcata cagtcggccg atgcgatccg
      781 cccgatttcc aaagcgcggg cgcccattgg aacccggctg gccggcagca tgggcgcgac
      841 aatccgcagg ggcagcatcg aggcgacctc cctagtgtca acatcagcgc caacgggcgc
      901 ggaaagctga acactttgat accgggcgcc acgctcgcag atctgctgga cgcggatggc
      961 gcggcgctgg tgatccacgc caatccggac gattatcgca ccgatccgag cggcaatagc
     1021 ggcggccgca tcgcctgcgg cgtcatcgag cggtcctatt agatcgcctc gcctgcctca
     1081 cgggcgcgcg caaggacgct ggcctcggcc gccggaaccg tgcgccatgc aagcagcagc
     1141 aggacgagcg aaatcggcgc agccatgagc agcgaaagta cccccaaacg gagattgccg
     1201 ccggttgcgg tcgacatgaa cccggcgaaa taggggccga gcgccagccc caccagcgcc
     1261 gtcgcaatga agaaagtcgc cgtcgcggtg ccgcgcatcc gcggcagcac gagatcctgc
     1321 gtggtggccc ccgccgggcc aagcgccgcg ctcgcgagcc cgctcatcat gaagctggcg
     1381 atatagaagc cgagcgggct ggacgtggta taggcataga gcaggaacgg gatcggcagc
     1441 agcgtcccgg acatgattac cggcacgcgg ccccaggcgc gccgctgctt ggcccagtcg
     1501 gcgatccgtc cgcccagaac aatgccgagg aatccgccgg ctgcggcgcc gccgcccagg
     1561 taaaagccga cttccgtctt gggctgcagc agcactgtct cagcatagag tgcgccgaat
     1621 gccgcgacgc cataggacac gaatgagatc agcccatagc ccagggacac gtaaagaaag
     1681 gcgggcgtgc cccagatcaa cttgaacgcc gccgcgtcgc ggcttttcaa cgcagcggcc
     1741 caggagaaga ccgcgtaagc accgatacag acagccagcc actgcgccgg gtttctggtt
     1801 gcgctgctga gtagccagat tgccagggcg gcgacggcaa gggcaagcag gttgataaga
     1861 agcgccctcg cgccgcgccg ggcggcgccg atcagcgtca gcggcgggat gatcgccacg
     1921 agctcgccta aaaagtcgcg aaacggtgca tcggacggcg acatgacgat gccgtcggac
     1981 gcgccgcgta gcggctcgcg cagcgtggcg acgatcgcgg cgagaatgag gccgggaagg
     2041 ccgaccgcca tgaaggcgac ctgccagccg accaggcccc aatggcctga gggaaatgcc
     2101 ccgttccagc tatcgacgat cgcgccgccg atgaagagcg acagcccgcc gccgatgaag
     2161 atgcccgagg aatagattgc gagcgccgtc gcgcgtttct cgcgcgggaa atagtccgaa
     2221 atcagcgaat aggcgcaagg agaggcggtg gcctcgccga cccccacgcc gatgcgcgcg
     2281 agcgtcagct gcgctccgtt gcgggccagg ccggaaaagg cggtcatcgc cgaccagatc
     2341 gcgagcccga cggtgatcag ccggacgcga tgccaattgt cggccagtcg tccgagcgga
     2401 atcccgaaca gcgaataaaa gacgccgaag gcggtgccga acagaaagcc gatatcggca
     2461 tcgttcagcc ccaagtcgcg cttcacatcc ttggcgagga tgctgaggat ctgccggtcg
     2521 acgaagttca gcacataaac gaagaaaa
//
LOCUS       DASQVK010000424         2844 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_218078,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000424 DASQVK010000000
VERSION     DASQVK010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2844
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218078"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..356)
                     /locus_tag="VE567_09185"
     CDS             complement(<1..356)
                     /locus_tag="VE567_09185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017499488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HYZ49051.1"
                     /translation="MAKIETPRPIRGTQDMLGEQALRFAHVVDTFERVRKLYAFQRIE
                     VPVFEATSVFARSLGETTDVVSKEMYTFEDRGGDSLTLRPEFTAGIARAYLTEGWQQY
                     APLKVATHGPLFRYERP"
     gene            406..1068
                     /locus_tag="VE567_09190"
     CDS             406..1068
                     /locus_tag="VE567_09190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1345 domain-containing protein"
                     /protein_id="HYZ49052.1"
                     /translation="MKARRLRPIGTYLAPERFLAFFAALVLATGLAAREFPLPQAILT
                     GFDIAALIFLVSVTSLLTPRTAEQMRELSRLNDANRAMLLVISGAVIVAILVAVGAEL
                     PQQGRLDGYGTALVIATLALAWLFSNTVYALHYAHIYYLPDRAGEHDRGGIDFPGRGE
                     PDYSDFVYFAFTIGMTFQTSDTCITSRAIRRVVVVHGFAAFVFNIGVLAFTVNILGGG
                     RG"
     gene            1117..>2844
                     /locus_tag="VE567_09195"
     CDS             1117..>2844
                     /locus_tag="VE567_09195"
                     /inference="COORDINATES: protein motif:HMM:NF036516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M61"
                     /protein_id="HYZ49053.1"
                     /translation="MKLLLPLALFAAAPALAQSIPAAKDVPFAGAMTLAVDLRNATQG
                     IFRVHQTIPVQGPGPMVLLYPKWKPGNHSPSGQIENLAGLKLSAGGKPLAWRRDPVDM
                     FAFHVDVPAGVTGIEAEFQYLSPQRSGGDRRVFGPTMANLQWESVSLYPAGYYVHNIP
                     VRASATYPAGWTGFTALRGQLQGTTVTYDQVPYDILVDSPVYAGAHAKQVPLDPQVTF
                     DMVADAPWQLDITPEQVAAHKRLVEQADRLFGTRHYDHYDFLVALSDYQSGDGLEHHR
                     SSENTLDADLLTDWNATLYDHYVVAHEYVHSWNGKFRRPADLWTPDYNQPMQNSLLWV
                     YEGQTQFWGDVLAARSGLWSKQAFLDFLANVVARYSEGMPGVAWRSVQDTTNQAIITD
                     HGRGGAWSSWFRSADYYRNAELMWIEADATIRKLSGGKKSMDDFAKLFFGVEPGQWDH
                     ELTYRFDDVAAALNRIAPYDWAGFLRSRLDATDPALPLKSVESAGYRLAFGDKPTASA
                     RAQFDNAKTDDFTYSIGLSLSKQGEIKDVLWDGPAFRMGVRPIDEVVAVNDARYDAEA
                     MARAITDAKR"
BASE COUNT          483 a          930 c          896 g          535 t
ORIGIN      
        1 ggccgctcat aacggaacag cggcccatgc gtcgccactt tgagcggcgc atattgctgc
       61 caaccctcgg tcagataggc gcgggcgatg ccggcggtga attctggccg gagcgtcagc
      121 gaatccccgc cgcgatcctc gaacgtgtac atttccttgg agaccacatc ggtggtctcg
      181 cccagggatc gcgcgaacac cgacgtcgcc tcaaacaccg gcacttcgat gcgctggaaa
      241 gcgtagagct tgcgcacgcg ttcgaacgtg tcgacgacat gggcgaagcg cagcgcctgc
      301 tcgccaagca tgtcttgggt gccgcggatc ggtcggggag tttcgatctt tgccataaag
      361 cgccgctcac taggcgaacc gcggcagttt cgctagcgtc tcgccatgaa agctaggcgt
      421 ctgcggccga tcggcactta cctcgcacca gagcgcttcc tggccttctt tgccgctctg
      481 gtgctcgcga ccggactcgc cgcgagggaa tttccgctgc cccaggccat cctgaccggc
      541 ttcgatattg cggcactcat ctttctggtc tcggtcacgt cgctgctcac gccccgcaca
      601 gccgagcaga tgcgcgagct gtcacgtctc aacgatgcga accgggccat gctgctggtc
      661 atttcaggcg cggtgatcgt cgccattctc gtcgcggtcg gcgcggagct gccccagcag
      721 gggcgattgg acgggtacgg cacggcgctg gtgattgcga cgctggcgct tgcctggcta
      781 ttttccaaca cggtctatgc gctgcactat gcgcatattt actatctgcc tgatcgggcc
      841 ggcgagcacg accgcggcgg gatcgacttt ccgggccgcg gcgagcccga ctattccgac
      901 ttcgtctatt tcgccttcac gatcggcatg acgttccaga cctcggatac ctgcatcacc
      961 agccgtgcga tacggcgcgt ggtcgtggtg catggctttg cggccttcgt gttcaatatc
     1021 ggcgtgctcg ccttcacggt gaatatcctg ggcggcggcc gcggctaggc cccaattccg
     1081 ctttcgcggg aagggcgggc aagctagcga gcgtccatga agttgctgct cccgctggcc
     1141 ttgttcgccg ccgctcccgc ccttgcccaa tccattcccg ccgcgaagga cgtgccgttt
     1201 gcgggcgcga tgacgctggc cgtcgatctg cgcaacgcga cccagggcat attccgggta
     1261 caccagacga tccccgtcca ggggccgggg ccgatggtgc tgctctatcc caaatggaag
     1321 ccgggcaacc actcgccctc cggccagatc gagaatctcg ccggcctgaa gctcagcgcc
     1381 gggggcaagc cgctcgcctg gcggcgcgat ccggtcgaca tgttcgcttt ccatgtcgat
     1441 gtgccggcgg gcgtcaccgg gatcgaggcc gagttccaat atctctcgcc gcaaagaagc
     1501 ggcggcgacc gccgggtgtt cggcccgacc atggcgaacc tgcaatggga gtccgtgtcg
     1561 ctctatccgg cgggctatta tgtccacaac atcccggtcc gggcgagcgc gacctatccc
     1621 gccggctgga cgggcttcac ggcgttgcgc gggcagctcc agggcacgac cgttacttac
     1681 gaccaagtgc cctatgacat tctggtcgac tctccggtct atgccggcgc tcatgcgaag
     1741 caggtgccgc tggacccgca ggtcactttc gacatggtcg cggacgcgcc ttggcagctc
     1801 gatattaccc ccgaacaggt cgcagcccac aagcggctgg tcgagcaggc cgacaggctg
     1861 ttcggcacgc gccattacga tcattatgac ttcctggttg ccctttccga ctaccagtcc
     1921 ggcgacgggc tcgagcatca tcggagctcc gagaacacgc tcgacgcgga tctgctgacc
     1981 gattggaacg caaccctgta cgaccattat gtcgtcgcgc acgaatatgt gcacagctgg
     2041 aacggcaaat tccgccgccc tgcggatctt tggacgcccg attacaacca gccgatgcag
     2101 aacagcctgc tctgggtcta tgaaggccag acgcagttct ggggcgatgt tctggcggcg
     2161 cgttcgggcc tgtggagcaa gcaggccttt ctggatttcc tcgccaatgt ggtcgcgcgc
     2221 tatagcgagg gcatgccggg cgtcgcctgg cgatcggtgc aggacacgac caaccaggcg
     2281 atcatcaccg atcatggccg cggcggcgcc tggtcgagct ggttccgcag cgccgattat
     2341 taccgcaacg cggagctgat gtggatcgag gccgacgcga cgatccgcaa gctcagcggc
     2401 ggcaagaaaa gcatggacga tttcgccaag ctcttcttcg gcgtcgagcc gggccagtgg
     2461 gaccacgagc tcacttatcg gttcgacgac gtggcggcgg cgcttaaccg gatcgcgcct
     2521 tatgactggg ccggtttcct gcgcagccgg ctcgacgcga ccgacccggc gctgccgctc
     2581 aaatccgtgg agagcgccgg ctaccggctg gcgttcggcg acaagccgac ggcgtctgcc
     2641 agggcccagt tcgacaacgc caagaccgac gatttcactt attcaattgg cctcagcctg
     2701 tcgaagcaag gcgagatcaa ggatgtgctg tgggacggcc cggcattccg catgggcgtt
     2761 cgccccatcg atgaagtggt tgcggtcaac gacgcgcgat atgacgccga ggcgatggcg
     2821 cgcgccatca ccgacgcaaa gcgg
//
LOCUS       DASQVK010000425         4956 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_470829,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000425 DASQVK010000000
VERSION     DASQVK010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4956
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_470829"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..216
                     /locus_tag="VE567_09200"
     CDS             <1..216
                     /locus_tag="VE567_09200"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007012209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase"
                     /protein_id="HYZ49054.1"
                     /translation="SGSGWPSFTHPFAPEAVTEHEDISHGMRRVEVRCARCDGHLGHV
                     FPDGPGPEGLRYCINSASLDFEPKKNA"
     gene            344..2470
                     /locus_tag="VE567_09205"
     CDS             344..2470
                     /locus_tag="VE567_09205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010184310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PBP1A family penicillin-binding protein"
                     /protein_id="HYZ49055.1"
                     /translation="MASPPRPSRPKPSKPRARRVIGRILKIVGATALVALVALVVGVY
                     LQASTLPTFSELKSSPNGQMIRVHAADGTVLVSLGPSYGEWLAYDQIPQVMKDAMVSV
                     EDKRFRAHLGVDPIGIARSAYVRVQRGHWAQGGSTITQQLARNVFLTNTRTFGRKARE
                     WLLALAMERKFTKDQILELYLNKVYFGGGSYGIDAASRRFFGHSASNLSLPEAAVIAG
                     LVKAPSRYSPTADAEAAIGRSGVVLNAMVENGKITPAEAADAERVKVRLAEDANENSV
                     RYFTDWALPQLETLIDETVQPLDVWTTLDPGMQKAAQASIRANAPGNAQAALVSLDRD
                     GAIRAMVGGKDYVTSIYNRATQATRQPGSAFKLFVYLSALEAGYKPDDTVVDEPVTIG
                     GWSPRNSNGRYAGPINLRTAFTYSVNTIAAKIGQDVGTTTIADMARRFGITTPINTQP
                     SMVLGTSDVRLIDMTRAFASVAAKGIAIAPYGITKVTTTGGRLLYKHETDTSRVLVAP
                     WVAAEMTDLMQSAVSVGTGRAAQIGRPVAGKTGTTSSNKDGWFLGFSSGLTTGVWMGR
                     DDARAVPGLQGGTAPARAFAAFMRVAVAKRPVEPFETEVKLPEWQLEPDAEAYYGNTD
                     QGAQPPLYDEQGNPVAPQARPYDNEAPPPEESGDRLDGAFIDRALGRDRAPAPPSQHD
                     PSAPPPPRDLARERLREQPAPDQSRP"
     gene            complement(2455..3159)
                     /locus_tag="VE567_09210"
     CDS             complement(2455..3159)
                     /locus_tag="VE567_09210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010542728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgjP-like metallopeptidase domain-containing
                     protein"
                     /protein_id="HYZ49056.1"
                     /translation="MRTIFSKAEPQFDGKPLKVVRHASARVMRLRVDPRDGAVRLTLP
                     RRASVRQAYAWVESQRPWVEAQLAGRAAGIRLVPGMRLEVAGELVLLAAAPASRLTRR
                     DGDVLRVGSDPALFEARVLRWLKAEAKRVLEAETRALGAAADVVIGRVSVGDTRSRWG
                     SCSAAGDIRYSWRLILAPPFVRRSTVAHEVAHRVHMNHGPAFKALERELLGESPAAAR
                     AWLRANGARLHGYGRD"
     gene            complement(3134..3559)
                     /locus_tag="VE567_09215"
     CDS             complement(3134..3559)
                     /locus_tag="VE567_09215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgN family cysteine cluster protein"
                     /protein_id="HYZ49057.1"
                     /translation="MSRFWEDKPLEALDRAEWEALCDGCGKCCVHKLEDDETGELFPT
                     NVACKLLDRHSGRCTNYRHRRAFVPECVRLTPKLAATLDWLPNTCAYRLRAEGKPLAD
                     WHPLVSGDPESVHKAGMSVRGWTVSEIEAGALEDHILES"
     gene            complement(3556..4122)
                     /locus_tag="VE567_09220"
     CDS             complement(3556..4122)
                     /locus_tag="VE567_09220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031966 - mitochondrial membrane
                     [Evidence IEA];
                     GO_process: GO:0033617 - mitochondrial cytochrome c
                     oxidase assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HYZ49058.1"
                     /translation="MLSLPLALAACSQAGGNAEPPLAGARIGGPFALVNQDGKPVTDR
                     DYAGRYRLMYFGYTYCPDVCPVDLQNLMAGYRLLEKSDPAVAAKVAPIFVSVDPERDT
                     APVLKQYVSAFHPKLAGLTGTPTQIATVTKEYAIVYSKEQRPGATDYLMNHSRVAYLF
                     GPKGEPIALIPQEGTPEQIAAEMKRWVT"
     gene            4201..4788
                     /locus_tag="VE567_09225"
     CDS             4201..4788
                     /locus_tag="VE567_09225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012049024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HYZ49059.1"
                     /translation="MFRAFLSLLLLVVAAAPAGAQFSNSFNFLKAVKDRDGAKAMDLL
                     GKGGPNLIDTQEYSSGERAIHLVVKDRDISWLAFLLQKGARVDVKDNQGNTPLMDAAR
                     VGFLDGARLLIARGAQVNAANSMGETPLIVAVQNRDLAMTRLLLTEGADPAKRDTGTG
                     MSAREYAVRDGRSDAILKLMDEIKPAAKRGIAGPK"
     gene            complement(4793..>4956)
                     /locus_tag="VE567_09230"
     CDS             complement(4793..>4956)
                     /locus_tag="VE567_09230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010405968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MmcB family DNA repair protein"
                     /protein_id="HYZ49060.1"
                     /translation="IVADRYDAAIAREAAESTVPAPRRKAATLDFARRAARRLLGHLD
                     PDCDALGLG"
BASE COUNT          837 a         1735 c         1595 g          789 t
ORIGIN      
        1 tccggctcgg gctggccgag cttcacccac ccctttgcgc ccgaagcggt gaccgagcat
       61 gaggacatca gccacggcat gcgccgggtg gaagtccgct gcgcccgctg cgacgggcat
      121 ctcggccatg tcttccccga tggtcccggc cctgagggcc tgcgctactg catcaacagc
      181 gcctcgctgg acttcgagcc gaagaagaac gcctaggcca cgcaattcca atacagcccg
      241 cgttcatcaa cgcaccgcca agcgccgtcg cgatgcaggc cggggcgcgc aaagctaatc
      301 cttgtgaccg gcgggcttac cctctaaacc ccggcgcacc ccgatggctt ctcccccgcg
      361 tccctcgcgt cccaaacctt cgaaacccag agcgcgccgc gtgatcggcc gcattctgaa
      421 gatcgtcggt gcgactgcgc tcgtcgcgct cgtggctttg gtcgtcggcg tttatctcca
      481 ggcctcgacg ctgccgactt tctcggaact caaatcctcg cccaacgggc agatgatccg
      541 cgtccatgcc gccgacggca cggtgctggt gtcgcttggc cccagctatg gcgagtggct
      601 ggcctacgac cagatcccgc aagtgatgaa ggatgcgatg gtctcggtcg aagacaagcg
      661 cttccgcgcg catttgggcg tcgacccgat cggcatcgcc cgctcggcct atgtgcgcgt
      721 gcagcgcggc cactgggcgc agggcggctc gacgatcacc cagcagctcg cgcgcaacgt
      781 gttcctcacc aatacgcgca ccttcggccg caaggcacgc gaatggctgc tcgcgctggc
      841 gatggaacgt aagttcacca aggaccagat tctcgagctc tatttgaaca aggtctattt
      901 cggcggcggc tcttacggca tcgatgccgc ctcgcgccgt ttcttcggcc attcggcgag
      961 caatctgagc ctgcccgaag ctgcggtgat cgcggggctg gtgaaggcgc cctcgcgcta
     1021 ttcgccgacc gccgacgccg aagccgcgat cggccgctcg ggcgtggtgc tcaacgcgat
     1081 ggtcgaaaac gggaagatca cgccggccga agctgcggac gcggagcggg tcaaggtccg
     1141 gctcgccgag gacgcgaacg agaacagcgt ccgctatttc accgactggg cgctgcctca
     1201 gctcgaaacg ctgatcgacg aaaccgtcca gccgctcgac gtctggacca cgctcgatcc
     1261 cggcatgcag aaagcggcgc aggcgtctat ccgcgcgaac gcacccggca atgcgcaagc
     1321 ggcgctggtc tcgctcgacc gcgacggcgc gattcgggcg atggtcggcg gcaaggatta
     1381 cgtcacgtcg atctacaacc gcgccaccca agccacgcgc cagccgggct cggctttcaa
     1441 gctgttcgtc tatctctcgg cgctggaagc cggttacaag cccgacgaca ccgtcgtcga
     1501 cgagccggtg acgatcggcg gctggagtcc gcgcaacagc aatggccgtt atgccggccc
     1561 gatcaacctg cgcaccgcct tcacttattc ggtgaacacc attgccgcaa agatcggcca
     1621 ggatgtcggc acgaccacca tcgcggacat ggcgcggcgc ttcggcatca ctacaccgat
     1681 caacacccaa ccctcgatgg tgctcggcac ttcggacgtg cggctgatcg acatgacgcg
     1741 cgcgtttgca tcggtcgcag cgaaggggat cgcgatcgcg ccttatggca tcaccaaagt
     1801 gacgacgacc ggcgggcggc tcctctataa acatgagacc gacacgtcgc gcgtgctggt
     1861 cgcgccctgg gtggccgcgg agatgaccga cctgatgcaa agcgcggtct cggtcggcac
     1921 cggccgcgcc gcgcagatcg ggcggcccgt cgcgggcaag acgggtacga ccagcagcaa
     1981 caaggacggc tggttccttg gcttttcgag cgggctcacc accggcgtat ggatgggccg
     2041 cgacgatgcg cgcgcggttc ccggcctgca gggcggcacg gcgccggcgc gcgctttcgc
     2101 tgccttcatg cgcgtggccg tcgccaagcg cccggtggag ccgttcgaga ccgaagtgaa
     2161 gctgcccgaa tggcagctcg agccggacgc cgaggcctat tacggcaata cagaccaggg
     2221 ggcgcagccg cccctttatg acgagcaagg caaccccgtc gcgccccagg cacggcctta
     2281 cgataatgag gcgccacccc cggaggagag tggcgaccgg ctcgacggcg cctttatcga
     2341 tcgcgccctg ggccgcgacc gcgcgcccgc gccgccctcg caacacgacc cgagcgcccc
     2401 gcccccgcca cgcgatctcg cgcgcgagcg gctgcgcgaa cagcccgcgc ccgatcagtc
     2461 gcgcccataa ccgtgaagcc gggcgccgtt tgcgcgtagc caggcgcgcg cggcggccgg
     2521 gctttccccc agcaattccc gctccagtgc cttgaacgcc gggccgtggt tcatgtgcac
     2581 ccggtgcgcg acttcgtgcg cgacggtcga acggcgcacg aacggcggcg cgaggatcag
     2641 ccgccagcta tagcgaatat cgcccgcggc cgagcagctg ccccaacgcg agcgcgtgtc
     2701 gcccacgctc acgcgcccga tcaccacgtc ggccgcagcg cccagcgcac gcgtctccgc
     2761 ctccagcacg cgcttcgcct cggccttgag ccagcgcagc acccgcgcct cgaaaagcgc
     2821 cggatcgctg ccgacgcgga gcacatcgcc gtcgcgccgc gtcagtcgcg aagccggggc
     2881 cgcggcgagc aggaccagct cacccgctac ttccagccgc atgcccggaa ccagccggat
     2941 ccccgccgcg cgcccggcaa gctgcgcctc gacccagggc cgctgacttt ccacccaggc
     3001 ataggcctgg cgcaccgagg cgcggcgggg cagcgtcagc cgtacggcgc cgtcgcgcgg
     3061 atcgacgcgc agccgcatca cccgcgcgct cgcatggcgc accaccttga gcggcttgcc
     3121 gtcgaactgc ggttcagctt tcgagaatat ggtcctcaag cgcccccgcc tctatctcgc
     3181 tgaccgtcca gccccgtacc gacatgccgg ccttgtgcac cgattcagga tcgccgctca
     3241 ccagtggatg ccagtcggca agcggcttgc cctcggcccg cagccgatag gcgcaggtgt
     3301 tcggcagcca gtcgagcgtg gcggcgagct tgggcgtcag ccgcacgcat tcgggcacga
     3361 aagcgcggcg gtggcggtaa ttggtgcagc ggccgctatg ccggtcgagc agtttgcagg
     3421 cgacattggt cgggaagagc tcgccggttt cgtcgtcctc cagcttgtgc acgcagcatt
     3481 tgccgcagcc gtcgcacagg gcttcccact cggcgcgatc caatgcctcc agcggcttgt
     3541 cttcccagaa ccgactcatg tcacccagcg cttcatctcg gcggcgatct gctcgggcgt
     3601 cccttcttgc gggatcaggg caatcggctc gcccttgggc ccgaacagat aggcgacgcg
     3661 gctgtggttc atcagatagt cggtcgcgcc cggccgctgt tccttggaat agacaatagc
     3721 atattccttg gtgaccgtgg cgatctgcgt tggcgtgccg gtcaggccgg cgagtttcgg
     3781 atggaaggcg ctcacatatt gcttcagcac cggcgccgtg tcccgctccg gatcgacgct
     3841 gacgaagatc ggcgcgacct tcgctgccac tgccggatcg ctcttttcga gcaggcgata
     3901 gcccgccatc agattctgca gatcgaccgg gcagacatcc gggcaatagg tatagccgaa
     3961 atacatcagc cggtagcggc cggcataatc ccggtcggtc actggcttgc cgtcctggtt
     4021 gacgagcgcg aaggggccgc cgatccgcgc gcccgcaagc ggcggttcgg cgttgccgcc
     4081 agcctggctg cacgcggcaa gcgccagtgg caaagaaagc atcagggttc ggaagttcat
     4141 cgcgccggca gaaatgctgt gctaacccgc gcggatcaag tgcaggcggg tcatcaggtc
     4201 atgtttcgtg cttttctgtc cctgttgctg ctggtcgtgg cggccgcgcc ggccggcgcg
     4261 caattctcca acagcttcaa cttcctcaag gcggtaaaag accgcgacgg cgccaaggcg
     4321 atggatctgc tcggcaaagg cgggcccaac ctgatcgaca cccaggaata ttcgtccggc
     4381 gagcgggcga tccatctggt cgtcaaggat cgggatatca gctggctcgc cttcctgctt
     4441 cagaagggcg cccgcgtcga tgtgaaggac aatcagggca atacgccgct gatggacgcc
     4501 gcgcgcgtcg gttttctcga cggggcacgg ctgttgatcg ccaggggagc gcaagtgaat
     4561 gccgctaaca gcatgggcga gacgccgctg atcgtcgctg tgcagaatcg cgacctggca
     4621 atgactcggc tgcttcttac cgaaggtgcc gatcccgcca agcgggacac cggtaccggc
     4681 atgtcggcgc gtgaatatgc cgtgcgcgat ggccgctccg acgccattct aaagctgatg
     4741 gatgagatca agcccgccgc caagcgcggc atcgccggcc cgaaatagcg cgctacccca
     4801 gccccagcgc gtcgcaatcc gggtccagat gcccgagcag ccgacgcgcg gcgcggcgcg
     4861 cgaagtcgag cgtcgccgct ttccggcgcg gcgcgggcac ggtgctctcc gctgcttcgc
     4921 gcgcaatcgc agcgtcatag cggtcggcga cgatga
//
LOCUS       DASQVK010000426         2820 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_186089,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000426 DASQVK010000000
VERSION     DASQVK010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2820)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2820)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2820
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186089"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(92..619)
                     /locus_tag="VE567_09235"
     CDS             complement(92..619)
                     /locus_tag="VE567_09235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010219722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheD"
                     /protein_id="HYZ49061.1"
                     /translation="MESIAIVQGEHVVAARPNVLITTVLGSCISVCLQDRVARVGGMN
                     HFLLGEPAPGHRVCERSLLSYGIHTMELLINEMMKLGAARNRLRAHLYGGATIIEGLG
                     RIGASNCDFARRFVETEGIAVGHIDLGGAHARRVEFLPYEGRSRCRLVSLAPHSVADP
                     PRALAVHNAGELELF"
     gene            complement(630..1019)
                     /locus_tag="VE567_09240"
     CDS             complement(630..1019)
                     /locus_tag="VE567_09240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYZ49062.1"
                     /translation="MPAAAAIKVMVVDDQASMRAMIRRALQDFGFKDIRDKGDGAEAL
                     SAVRSDRVHLIISDFNMPDMDGLQLLEQVRGDPMIGKTVFIMLTGSADREIVQKAAAL
                     GVNNYLVKPFAPAALKEKIERVFGELT"
     gene            complement(1032..2054)
                     /locus_tag="VE567_09245"
     CDS             complement(1032..2054)
                     /locus_tag="VE567_09245"
                     /EC_number="3.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010404668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0008984 - protein-glutamate methylesterase
                     activity [Evidence IEA];
                     GO_function: GO:0050568 - protein-glutamine glutaminase
                     activity [Evidence IEA];
                     GO_process: GO:0006482 - protein demethylation [Evidence
                     IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0018277 - protein deamination [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator protein-glutamate
                     methylesterase"
                     /protein_id="HYZ49063.1"
                     /translation="MSAPVRVLVVDDSASMRMALSRILAADPEIEVIGLAPEPHAARA
                     MIKELNPDVVTLDVEMPGMDGLSFLEKIMRLRPMPVVMCSTLTARGTEVTIEALRLGA
                     VDCIAKPCGNPLDIAGDAEHLRETVKAAARSQVRQGGAALPVQRAAAGASLRDVVIAI
                     GSSTGGVEALFSIIGTLPNDCPPVLIVQHMPARFTRGFAARLNSVSGVRVIEAVDGSP
                     IERGTVYIAPGGERHMELSPSQARIRLRAADPVGGHRPSVDVLFHSVARLGAGAVGVI
                     LTGMGTDGADGLLAMRQAGAHTLGQNQQTSVVYGMPRAAFEIGAVERQLSLSAMPEAI
                     LAACRA"
     gene            complement(2051..>2820)
                     /locus_tag="VE567_09250"
     CDS             complement(2051..>2820)
                     /locus_tag="VE567_09250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010404667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008983 - protein-glutamate
                     O-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HYZ49064.1"
                     /translation="IHLTEAKRTLVRSRLSRRLREKDIASFADYVAHIERDADERRAM
                     VIALTTNHTHFFREAHHFDHFRVRLLPQLKARASGKGVRIWSAGCSSGEEAYTIAMCL
                     LGRDRAEAAWLRGQDVRVLATDISVPMIELARCGVYGAEMLGSIPEPYRSAWLRPHPD
                     GFEMASEARALVTAQTLNLFETWPMRQFYDAIFCRNVMIYFDNDAKAELEARLVERLA
                     PGGFLYIGHSERLLHPAEIGMTLCGQTIYAKNKGDLR"
BASE COUNT          537 a          926 c          874 g          483 t
ORIGIN      
        1 ttccgtaatc tcttgagcga ccgcggcgca tagggcgatg aggaaatcgt cggtctggga
       61 catgtcttgg tcgatccagg cagagagatg gctaaaagag ttcgagttcg ccggcgttgt
      121 gcaccgcaag ggcccgcggc gggtccgcta cggaatgggg cgcgagcgac accagcctgc
      181 agcgtgaacg cccctcgtac ggcaggaatt cgacgcgtcg tgcatgggcg ccaccgagat
      241 cgatatggcc aaccgcaatt ccctcggtct cgacgaagcg acgagcgaaa tcgcaattgc
      301 tggcgccgat tctcccaaga ccctcgataa tggtcgcgcc accatagagg tgggcgcgca
      361 gccggttgcg ggcggcgccg agtttcatca tttcgttgat gagcagctcc atggtgtgga
      421 tcccgtagct tagcaggctg cgctcgcaga cgcggtggcc aggggccggt tcgcccagga
      481 ggaagtgatt catgccgccc acccgggcga ccctgtcctg aaggcacacg gagatgcatg
      541 aaccgagcac ggtggtgatg agcacgttcg gccttgcggc caccacgtgc tcgccctgaa
      601 cgatcgcgat gctctccatg accatcggct caagtcagct cgccgaagac gcgctcgatc
      661 ttctccttga gcgccgccgg agcgaatggc ttgaccaagt aattgttgac gccgagggcc
      721 gccgccttct gaacgatttc gcggtcggcc gaaccggtca gcatgatgaa gaccgtcttc
      781 ccgatcatcg ggtcgccgcg cacctgctcg agcaattgca gcccatccat gtccggcata
      841 ttgaaatcgg aaatgatgag gtggacgcga tccgaccgga cggcgctcag cgcctccgca
      901 ccatcgccct tgtcgcggat atccttgaag ccgaaatcct gaagcgcacg gcggatcatg
      961 gcgcgcatgc tcgcctgatc gtcgacgacc atgaccttga tcgcagctgc tgctggcatc
     1021 gccttaccta ctcaagcgcg gcatgccgcg aggatcgcct cgggcatggc agacagactc
     1081 aactgacgtt ccaccgcgcc gatttcgaat gcggcgcgcg gcattccata aaccacgctg
     1141 gtctgctggt tttgaccgag cgtatgcgca ccggcctgac gcatcgccag caggccatcg
     1201 gccccgtcgg tgcccatgcc ggtcagaatt accccgacag cgcccgcgcc gaggcgcgcg
     1261 acggaatgaa aaagcacatc taccgacggc cggtgtccgc cgacgggatc ggccgcacga
     1321 agccgtatcc gagcctggct ggggctcagt tccatatgcc gctctcctcc aggagcaata
     1381 tagacggttc cccgctcgat cgggctgcca tccaccgcct cgatcacgcg cacgccggaa
     1441 acagaattaa ggcgggcggc gaagcctctc gtgaaacggg cgggcatgtg ctgcacgatc
     1501 agcacggggg ggcagtcgtt cggcaaagtt ccgataatcg agaacagtgc ttcgactccg
     1561 cccgtcgacg acccgatcgc gatgacgacg tcgcgcaggc tggcgcccgc cgccgcccgt
     1621 tgcacgggca acgccgctcc gccctgccgc acctggctgc gggcggcggc cttgaccgtc
     1681 tcgcgcagat gctcggcatc gccggcgata tcgagcgggt tgccgcacgg tttggcgatg
     1741 cagtcgaccg cacccagccg gagcgcctcg atcgtcacct cggtcccgcg cgcggtcagc
     1801 gtcgaacaca tgaccacggg cattggccgc agccgcatga ttttttcgag aaatgacagg
     1861 ccgtccatgc ccggcatttc gacgtcgagc gtgaccacgt ccggattgag ttccttgatc
     1921 atcgcccgcg ccgcgtgcgg ctcaggcgcc aggccgatga cctcgatctc cggatcggcc
     1981 gcaaggatcc ggctcagcgc catacgcatg ctggcgctgt cgtcgacgac gagcacacgg
     2041 acgggcgcgc tcaccgcaaa tcgcccttat tttttgcgta aatggtctga ccgcacaggg
     2101 tcatgccgat ttcggccgga tgaagcaggc gctcggaatg accgatatag aggaagccgc
     2161 caggagcgag gcgctcgacc agccgggcct ccagctccgc cttcgcatcg ttgtcgaaat
     2221 aaatcatgac gttgcggcag aagatcgcat cgtagaattg ccgcatcggc caggtctcga
     2281 acagattgag cgtctgagcg gtaacgagcg ctctggcttc cgacgccatc tcgaagccgt
     2341 ccgggtgcgg ccgcagccat gccgaacgat agggctcggg aatcgagccc agcatttcag
     2401 ctccatacac gccgcaccgc gccaactcga tcatcgggac ggagatgtct gtcgccagaa
     2461 cgcgcacgtc ctggccgcgc agccaggcgg cctcggcccg atcgcggccg agcaggcaca
     2521 tggcgattgt gtaagcttcc tcgcccgacg agcagccggc cgaccagatg cggacaccct
     2581 tgcccgacgc acgcgccttc agctgaggca gcagccgcac gcggaaatgg tcgaaatgat
     2641 gagcttcgcg aaaaaaatgc gtgtgattgg tcgtaagcgc aatcaccatc gcccgccgct
     2701 cgtccgcatc gcgctcgata tgggcgacat aatccgcgaa gctcgcaatg tccttttccc
     2761 gtagccggcg gctgaggcgc gaacggacca atgtccgctt tgcctcggtc aaatggatac
//
LOCUS       DASQVK010000427         2258 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_92604, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000427 DASQVK010000000
VERSION     DASQVK010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2258)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2258)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2258
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92604"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(216..1667)
                     /locus_tag="VE567_09255"
     CDS             complement(216..1667)
                     /locus_tag="VE567_09255"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase family
                     protein"
                     /protein_id="HYZ49065.1"
                     /translation="MHLLRSLVRTRSFGLILALAALAIAAPQFAQAEALLVIEADTGK
                     VLQADNATMPWYPASVTKLMTAYVTLKAVKEGRITLDTLLTVSPTAASQSPSKMGFRP
                     GTQVTVDNALKMMLVKSANDMAMVLAEGVGGSIDGFSAQMNQTAQKLGMTQTSYVNPN
                     GLPAEGQITSARDLAILARAIIRDLPEYEYFVHIPSIRYGRRITQNFNKLIGRYPGAD
                     GFKTGFICASGYNLVASATRDGRRLIAVVLGASSGRMRAIRAAQLLDRGFANNGLSWL
                     RPSLGTVDNLVPIDASPPNLRDEMCGGKRKRPASDEDPDLVASNGESGSASGGESVAT
                     FFAAGLQPPMPKPSELLAQAPAPSEPIPVYTGPTRTGAALIAAVAADSERDAVKPRGK
                     GKKARVAAKKPDAGTEPKANAKSDAKPEAKQAAKPVIAVRHANAKPDTAAAKPAAAKP
                     AAKPVATGDQAATTKPAKPKAAAKPKNEAKPAG"
     gene            complement(1870..>2258)
                     /locus_tag="VE567_09260"
     CDS             complement(1870..>2258)
                     /locus_tag="VE567_09260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019367815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYZ49066.1"
                     /translation="SEKRFDTHAGERGRMLSGGERQRLSIARALLKDPPILILDEATS
                     ALDAVTEAKVNAALDEVMKGRTTFVIAHRLSTIRHATRILMFDNGRVIESGTFEELVA
                     KGGRFADLARAQFMVQERARVEVQAE"
BASE COUNT          342 a          704 c          775 g          437 t
ORIGIN      
        1 gctcgaccag cgaggcgtat tgggtgacgt cgatgtctgc aggcacgccg gccggatagt
       61 gcttgagcca gatccgctcc atggaattcc cctccggttt aggtcccgtt tcttcaggcc
      121 gggataccgc attttgggca gtattgagcg atgcggctgc cgatgacaag ccgcccgcgc
      181 gctatcgacg cagcgccgca agggtaacgg cgcggttaac cggccggctt ggcttcgttc
      241 ttcggcttgg ccgccgcctt gggcttcgcc ggcttcgtcg tcgcggcctg atcgcctgtg
      301 gccacaggct tggccgctgg ctttgctgct gccggctttg ctgcagctgt gtccggcttg
      361 gcattggcat ggcgcacagc gatgacgggt ttggcggcct gttttgcctc aggcttcgca
      421 tccgacttgg cgttggcttt gggctccgtc ccagcgtccg gtttcttggc ggcgacgcgg
      481 gccttcttgc ccttgccgcg cggcttcacc gcgtccctct ccgaatcggc cgcgacggct
      541 gcgatgagtg ccgcacccgt gcgggtcggg ccggtataga ccgggatcgg ctcggagggc
      601 gccggcgcct gggcgagcaa ttcggacggc tttggcattg gcggctgcag gccggccgca
      661 aagaaggtcg caacgctctc gccgcccgac gcgctccccg actcaccgtt gctcgcaacc
      721 agatcgggat cctcgtcgct ggcgggccgc ttgcgcttgc cgccgcacat ctcgtcgcgc
      781 agattcggcg gcgaggcatc gatcggcacc agattgtcga ccgtgccgag cgagggtcgg
      841 agccacgaca gcccgttatt ggcgaagccg cgatcgagca attgcgcggc gcggatcgcg
      901 cgcatgcgcc ccgaggacgc gccgagcacg accgcgatca gccgcctgcc gtcgcgcgtg
      961 gcggaagcca cgagattata gccggaggcg cagatgaagc cggtcttgaa gccatcggcg
     1021 ccgggatagc ggccgatgag cttgttgaag ttctgcgtga tccggcggcc gtagcggatc
     1081 gaggggatat ggacgaaata ttcatattcg ggcaggtcgc ggatgatggc gcgggcgagg
     1141 atcgcgagat cgcgtgccga ggtgatctgg ccttccgcag gcaggccgtt cggattgacg
     1201 tagctcgtct gcgtcatgcc gagtttctga gcggtctggt tcatctgtgc ggaaaaaccg
     1261 tcgatcgatc cgccgacgcc ttcggccagc accatcgcca tgtcgttggc cgacttcacc
     1321 agcatcatct tcagtgcgtt gtcgacggtg acctgggtgc ccggccggaa gcccatcttt
     1381 gacggcgact gtgaggcagc ggttggcgat accgtgagca gggtgtcgag cgttatacgg
     1441 ccctccttga ccgccttcag cgtcacgtag gccgtcatca gcttggtcac cgatgccgga
     1501 taccagggca tggtggcgtt gtccgcctgc aggacctttc cggtatcggc ctcgatcacc
     1561 agcagcgctt ccgcctgcgc gaactgcggg gccgcgatgg caagcgccgc aagcgcaagg
     1621 atcaggccga aggagcgggt gcgaacgagg gagcgaagga gatgcactat cctgatccgg
     1681 tccttgtgag ccccgcctat gcaaggcggg cctgagatgt aacgtgggtt tcaagcgtgt
     1741 tcggggcgcc atcgctttgc ggcggtgcaa ccctataccg gctcgccggg ggagaacaga
     1801 ggccgcgcga tcaaatcgtg gatgaaacag gctgaatgtc ggtgggattt gtccggaatg
     1861 ccgcccgggc tactcggcct gcacctcgac ccgtgcacgc tcctgcacca tgaactgggc
     1921 cctcgccagg tcggcgaaac ggccgccttt ggcaaccagt tcttcaaaag ttccgctttc
     1981 gatcaccctt ccgttgtcga acatcaggat gcgggtggca tggcggatgg tggagaggcg
     2041 gtgcgcgatc acgaaggtgg tgcggccctt catcacttcg tcgagagcgg cgttgacctt
     2101 ggcctcggtg acggcgtcga gcgcgctggt cgcctcatcg aggatcagga tcggcgggtc
     2161 cttgagcagc gcgcgggcga tcgacaatcg ctgccgctcg ccgcccgaca gcatgcggcc
     2221 acgctcgccg gcatgggtgt cgaatctctt ctcgctgc
//
LOCUS       DASQVK010000428         2799 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_470955,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000428 DASQVK010000000
VERSION     DASQVK010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2799
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_470955"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..766
                     /gene="argB"
                     /locus_tag="VE567_09265"
     CDS             <1..766
                     /gene="argB"
                     /locus_tag="VE567_09265"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011415223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HYZ49067.1"
                     /translation="AAAQFAQDVVLLKAVGINPVVVHGGGPQIGSMLKKLGVHSEFVD
                     GLRVTDEQTADVAEMVLSGAINKEIVAHIGQAGGKAVGISGKDGHFVRAAKLEHLVYD
                     AERDEEIQVDLGFVGEPVAVDTALLEHLEIAGMIPVVAPIGIGPAGETYNINADTMAG
                     AIAAALGAARLFLLTDVAGVLDKRGNLLSDLNPADIGRLREDGTIKGGMIPKLETCLK
                     AVENGVDAAVILDGRIPHAVLLEIFTKAGVGTLVRA"
     gene            832..1128
                     /locus_tag="VE567_09270"
     CDS             832..1128
                     /locus_tag="VE567_09270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HYZ49068.1"
                     /translation="MCALVQILQILLTALWWIIIIQAVLSWLVAFNVINTHNDFVRSV
                     LIALDRMTAPLYNPIRRIMPDLGALDLSPLVVLLLLSIIDQVLMPRLFIAACTV"
     gene            1125..2018
                     /gene="folD"
                     /locus_tag="VE567_09275"
     CDS             1125..2018
                     /gene="folD"
                     /locus_tag="VE567_09275"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004488 - methylenetetrahydrofolate
                     dehydrogenase (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HYZ49069.1"
                     /translation="MSQAEIIDGAAFAASLRARVADGAAALRAQAGRAPGLAVVLVGE
                     DPASQVYVRSKGKATVEAGMASIEHKLPAETSEDELLALVRQLNDDPAVDGILVQLPL
                     PKQIDESAVIATIDPDKDVDGFNPVNVGRLASGLHGFVPCTPLGCLMLLKDRLGSLSG
                     LDAVVIGRSNIVGKPMAQLLLSESCTVTVAHSRTRDLPDVVRRADIVVAAVGRPLMVR
                     GDWLKPGATVIDVGINRVPAEEPGKTRLVGDVAFDEALSVAGAITPVPRGVGPMTIAV
                     LLRNTLISACRREGIAPPAGL"
     gene            2015..2635
                     /locus_tag="VE567_09280"
     CDS             2015..2635
                     /locus_tag="VE567_09280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HYZ49070.1"
                     /translation="MIELFVSAFATLFVVIDPPGCAPIFASLTSGSSAMHRRSMAVRS
                     VSVAGLILLAFAIFGEAFLHSLGISLDAFRIAGGIMLFLIALEMVFEKRQEKREHRAE
                     DAKARSAPEDISIFPMGIPMIAGPGSIASVMLLMARGRGLPEDLVVLAALAVILVLTL
                     AALLLAGPLMRLVGERIEAMITRVLGVILAALAVQFVIDGVRGSLT"
BASE COUNT          449 a          934 c          922 g          494 t
ORIGIN      
        1 cgccgccgcg caattcgcgc aggacgtggt gctgctgaaa gcggtcggca tcaacccggt
       61 cgtggtgcat ggcgggggcc cgcagatcgg atcgatgctg aaaaagctcg gcgtccactc
      121 cgaattcgtg gatggcctgc gcgtaaccga cgagcagacc gcggacgtgg cggaaatggt
      181 cttgtccggc gccatcaaca aggagatcgt cgcccatatc gggcaggccg gcggcaaagc
      241 ggtcggcatt tcgggcaagg acggacattt cgtgcgcgcc gcgaagctcg agcatctcgt
      301 ctatgatgcg gaacgcgacg aagagattca ggtcgatctg ggctttgtcg gcgagccggt
      361 cgcggtcgat accgccctgc tggagcatct cgaaatcgcc ggcatgattc cggtggtggc
      421 cccgatcggc atcggcccgg caggcgagac ctataacatc aacgccgaca ccatggcggg
      481 cgcgatcgcg gccgcgctcg gcgcggcgcg cctgtttctc ctcaccgacg tagccggggt
      541 gctcgacaag cgcggcaatc tgctgagcga tctcaacccc gccgatatcg gccgactgcg
      601 cgaagacggc accatcaagg gcggcatgat ccccaagctc gaaacctgcc tgaaagcggt
      661 cgagaacggc gtcgacgcag ccgtgatcct cgatgggcgg ataccccatg cggtcctgct
      721 cgagatcttc accaaggccg gcgtcggcac tttggtgcgg gcctgagtga ggctggtaac
      781 acacccgccc ttccgctatc gcgcctccaa caaagcttcg ccgaggattt catgtgcgcg
      841 ctcgttcaga ttctgcagat cctgctcacc gccttgtggt ggatcatcat catccaggcg
      901 gtcctttcct ggctggtcgc gttcaacgtc atcaacacgc acaatgattt cgtgcgctcg
      961 gtgctgatcg cgctcgatcg gatgacagcg ccgctctaca atccgatccg ccggatcatg
     1021 ccggatctag gcgcgctcga tctctcgcct ttggtcgtgc tgctgctctt gtcgatcatc
     1081 gaccaagtgc tgatgccgcg gctcttcatc gccgcgtgca cagtgtgagc caggccgaga
     1141 tcatcgacgg ggccgccttt gcggcaagcc tgcgcgcccg cgtggccgac ggcgctgccg
     1201 ccctccgggc ccaggccggc cgcgcgccgg ggctcgccgt ggtgctggtc ggcgaggacc
     1261 cggccagcca ggtctatgtc cgctccaagg gcaaggcgac ggtcgaggcc ggcatggcct
     1321 cgatcgagca caagctgccg gcggaaacga gcgaggacga gctgctcgcg ctggtccgcc
     1381 agctcaatga cgatccggcg gtggacggca ttcttgtcca gctgccgctg ccaaaacaga
     1441 tcgacgaaag cgcagtgatc gcgacgatcg acccagacaa ggatgtcgat ggcttcaacc
     1501 cggtgaatgt cgggcggctc gcgagtgggc ttcatggctt cgtgccctgc acaccgctcg
     1561 gctgcctgat gctgttgaag gaccggctcg gcagcctgtc cggtctcgac gcggtcgtga
     1621 tcggccgctc gaacatcgtc ggcaagccga tggcccagct cctgctcagc gaaagctgca
     1681 cggtcacggt ggcgcatagc cgcacgcgcg acctgcccga cgtggtccgc cgtgccgata
     1741 tcgtcgtcgc tgcggtcggc cggccgctga tggtgcgcgg cgattggcta aagcccggcg
     1801 cgacggtgat cgacgtcggc atcaaccgcg tccccgccga agagcccggc aagacgcgcc
     1861 tggtcggcga tgttgccttc gacgaagcgc tgagcgtcgc cggcgcgatc acgccggtgc
     1921 cgcgcggcgt cggcccgatg acgatcgcgg tgctgctgcg caacaccctg atctcggcct
     1981 gccgccggga gggcatcgcc ccgccagcgg gcctatgatc gagctgttcg tctccgcctt
     2041 cgccacgctg ttcgtcgtca tcgatccccc cggctgcgcc ccgatcttcg ccagcctgac
     2101 gtccgggtcg agcgccatgc accggcgcag catggcggtg cgctccgtga gcgtggcagg
     2161 gctgatcctg cttgccttcg cgatcttcgg cgaggcattc ctgcactcgc tcggcatcag
     2221 cctcgacgcc ttccgcattg cgggcggcat catgctcttc ctgatcgcac tcgagatggt
     2281 gttcgaaaag cgccaggaaa agcgcgaaca ccgcgccgag gacgccaagg cgcggtcggc
     2341 gcccgaggac atctcgattt tcccgatggg cattccgatg atcgccggcc cgggctcgat
     2401 tgcttcagtg atgctgctga tggcccgcgg ccggggcctg cctgaggatc tcgtggtgct
     2461 cgccgcgctt gccgtgatcc tggtgctcac gctggcggct ctcctgctcg ccgggccgct
     2521 gatgcggctg gtcggcgagc ggatagaagc gatgatcacg cgcgtgctgg gcgtgatcct
     2581 tgcagcactc gccgttcagt tcgtgatcga cggggtacgc ggcagcctta cttgatccgc
     2641 cacaaccaat agggcgagcc cttgggcaac ggcaccggct cgagccaggg aaagcgctcc
     2701 cccttctcca gccgtgcgta gaagcccttg gggctgcgcg agcgatacac ggtcgattcg
     2761 gcgaaatagg ggcagaccag caacaaggtc gctccatgc
//
LOCUS       DASQVK010000429         2979 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_186129,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000429 DASQVK010000000
VERSION     DASQVK010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2979
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186129"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            61..945
                     /locus_tag="VE567_09285"
     CDS             61..945
                     /locus_tag="VE567_09285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family acid phosphatase"
                     /protein_id="HYZ49071.1"
                     /translation="MSGRTKRLLALASALMASGCATVRETPAPVAVPASDNPPPGFQY
                     EYGSGEAGALQMAAFHAMLAYVADKVAHRPGESVVLAEDATLATPKWVPCGDKPFAVI
                     FDVDETLLINLGFEERAARGEPYSPERWDAWERTGAAAVEAMPGALHGVEKLRGMKVT
                     VVFNTNRSARNADATIAALKAAGLGDAVHGETLFLQGDDAMGSRKDGRRWTIAAKYCV
                     LAMVGDQLGDFTDLYNAIPDPALRRTATIHGPGGGKWGKGWFVLPNPVYGTALKGSFD
                     QVFPLDKRWAEPPKETKH"
     gene            945..1580
                     /locus_tag="VE567_09290"
     CDS             945..1580
                     /locus_tag="VE567_09290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020817693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase subunit B"
                     /protein_id="HYZ49072.1"
                     /translation="MPWTRDEMAARAAKELKDGFYVNLGIGIPTLVANHIPPGVEVTL
                     QSENGMLGIGPFPYEDEVDPDLINAGKQTISQLAQSSYFGSEQSFAMIRGGHIDLTVL
                     GAMEVSEQGDIANWMIPGKMIKGMGGAMDLVAGVKKIIVVMEHNAKDGSPKFIPACTL
                     PLTGKNVVDMIITDLAVFQRPDHNSPFKLIELAPGVTANEVKAKTTAHYVD"
     gene            1658..2392
                     /locus_tag="VE567_09295"
     CDS             1658..2392
                     /locus_tag="VE567_09295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49073.1"
                     /translation="MATRALTPHLAAERRFYLGMSVALLATIFAGFAPSFYLRGLVPA
                     YAPFAPLTPLVLLHGLLFSAWVLLFMVQVALVSAGRQDLHRRLGIAGFGMVVAMAIVG
                     LWTALDRAAHGFGVPIVPPLAWLAVPFFDVPVFFGLIAAGLANRARPQVHKRFMLVSM
                     IGLLAPSIGRLPWPAAVPMPLILIGGLLLFLVPLALWDLRSRGKLHWVTILGAVVLPS
                     SFVLRFAVWQTPAWLAFAGWISAPFA"
     gene            2520..>2979
                     /locus_tag="VE567_09300"
     CDS             2520..>2979
                     /locus_tag="VE567_09300"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HYZ49074.1"
                     /translation="MVKKIRSGIKNRPKAAAIGGGLAGMFVMLAVAPGLIAARSPAEA
                     SSPGVYAGARAGLASAAYRLPQKVDYARLDQRLRLAATKPDIVGMAVAVIENGEITFV
                     QGYGTTTANGSEPVTPTTVFRWASLSKGVAATMVGLLADEGKLSLNEPVSQ"
BASE COUNT          500 a          928 c          989 g          562 t
ORIGIN      
        1 cgcacggtgc ggcagcgcga ggctgcctag gcgacaggaa acgatcatga gggggcgatc
       61 atgagcggac ggacgaaacg gctgcttgca cttgcgtcgg cgctgatggc ctccggctgc
      121 gcaaccgtgc gcgagacgcc ggcgcccgtg gcggtgcccg cctcggacaa cccgccgccc
      181 gggttccaat atgaatatgg ctcgggtgaa gcgggcgcgc tgcagatggc ggctttccac
      241 gcgatgcttg cctatgtcgc cgacaaggtg gcgcatcggc ccggggaaag tgtggtgctt
      301 gccgaagacg ccacgctggc cacgcccaaa tgggtgccct gcggggacaa accctttgcc
      361 gttatcttcg atgtcgacga aaccctgctc atcaatcttg gcttcgaaga gcgcgccgcg
      421 cggggagagc cctatagccc cgaacgctgg gacgcgtggg agcgtaccgg ggccgccgcc
      481 gtcgaggcca tgcccggcgc gcttcatggc gtggaaaagc ttcgcggcat gaaggtgacg
      541 gtcgttttca ataccaaccg cagcgcccgc aatgccgacg cgacgatcgc cgctctcaag
      601 gctgccggcc tgggcgatgc cgtgcacggc gaaacgctct tcctgcaagg cgacgacgcg
      661 atgggatcgc gcaaggatgg ccgccgctgg accattgcgg ccaaatattg cgtgctggcg
      721 atggtcggcg accagctcgg cgatttcacc gatctgtaca atgcgatacc ggatcccgcc
      781 ttgcggcgga ccgcgacgat ccatggtccg ggcgggggca aatggggcaa aggctggttc
      841 gtccttccga accccgttta cgggaccgcg ctcaaaggga gcttcgatca ggtgttcccg
      901 ctggacaaac gatgggccga gccgcccaag gagacaaagc actgatgccc tggactcgtg
      961 acgaaatggc cgcgcgggcg gcgaaggagc tcaaggacgg cttctatgtg aacctgggca
     1021 ttggcatccc gacgctggtc gccaaccata tcccgcctgg tgtcgaggtg acgctgcaga
     1081 gcgagaacgg catgctcggc atcggcccgt ttccttatga agacgaagtc gatcccgacc
     1141 tgatcaacgc gggcaagcag accatctcgc agctggcgca gtcgagctat ttcggctcgg
     1201 agcagagctt tgcgatgatc cgcggcgggc atatcgacct gaccgtcctc ggtgcgatgg
     1261 aagtcagcga gcagggcgac atcgccaatt ggatgatccc cggcaaaatg atcaaaggca
     1321 tggggggcgc gatggacctg gtcgcgggcg tcaagaagat catcgtggtg atggagcaca
     1381 acgccaagga cggcagcccg aaattcatcc ccgcatgcac gctgccgctg accggcaaga
     1441 acgtcgtcga catgatcatc accgacctcg ccgtcttcca gcggccggat cataacagcc
     1501 ccttcaagtt gatcgagctc gcgccgggcg tgacggcgaa cgaagtgaag gcgaagacca
     1561 ccgcgcatta cgtcgactga tctgctattt ccgtctccag agaagtgacg gagctgggcg
     1621 cgctggcttc agtcgcatct cttgaacggg ggacgaaatg gcgacacggg cactgacgcc
     1681 gcacctggcg gcggaacggc gtttctatct tggcatgtcg gtcgcgctgc tggcgacaat
     1741 cttcgccggc tttgcgccaa gcttctatct gcgcgggctg gtgcccgctt atgcgccgtt
     1801 tgctccgctg accccgctgg tgctcctgca cgggctgttg ttcagtgcct gggtactgct
     1861 tttcatggtc caggtggcgc tggtttcggc aggccgccag gatctgcacc ggcggctggg
     1921 tatcgccggg ttcggtatgg tggtggccat ggccattgtc ggcctgtgga cggcgctcga
     1981 ccgtgcggcc cacggctttg gcgtgccgat cgtgccgccg ctcgcctggc tggccgtgcc
     2041 gttcttcgac gtccctgtct tcttcgggct gatcgccgcg ggcctggcca atcgggcgcg
     2101 cccgcaggtg cataagcggt tcatgctggt ctcgatgatc ggcctgctcg cgccttcgat
     2161 cggccgctta ccctggcccg cggccgtgcc gatgccccta atcctgatag gcgggctgct
     2221 gctgtttctc gtcccgctcg ccctctggga cttgcggagc cggggcaagc tgcactgggt
     2281 caccatattg ggggctgttg tcttgccgag ctcgttcgtg ttgcggttcg cggtctggca
     2341 aaccccggcc tggctcgcct tcgcgggatg gatttcggcg ccctttgcct gacggttccg
     2401 aatccagccg tgcatttcaa ccgtttcgtc gtgaaatcag cggttaaaac cttgtcgcta
     2461 agatgaaact ctgattcttt gtcccatata ggggcaagag ggcagagggt cgctaagcct
     2521 tggtcaagaa gatcagatcg ggaatcaaaa atcgtccgaa ggctgcggcg atcggcggcg
     2581 gtcttgcggg catgttcgtc atgctcgcgg ttgctcccgg gctgattgcc gcgcgctcgc
     2641 ccgctgaggc gtcctcgccg ggcgtctatg ccggagcgcg ggcgggcctc gcctccgcgg
     2701 cctatcgctt gccccagaag gtcgattacg cgcggctcga tcaacggctg cgcctggccg
     2761 ccaccaagcc cgacatcgtc ggcatggcag tggccgtgat cgaaaatggc gagatcacgt
     2821 tcgtccaggg ctacggcacc actaccgcaa acggttcgga gccggttacg ccgacgacgg
     2881 tgttccgctg ggcatccctg tccaagggtg tcgcggccac gatggtcgga ctgctcgccg
     2941 acgaaggcaa attgtcgctc aacgagccgg tctcgcagt
//
LOCUS       DASQVK010000430         3066 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_315054,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000430 DASQVK010000000
VERSION     DASQVK010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3066
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_315054"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1920)
                     /locus_tag="VE567_09305"
     CDS             complement(<1..1920)
                     /locus_tag="VE567_09305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008600103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HYZ49075.1"
                     /translation="MTGRFAALLLASALLAGPALALDPPAKVLAGTTAQAGLIPLNVD
                     RKSGRLLATLPAPDAEGVSGRFIYTSALETGLGSAPLGLDYALNSGSRLLVFRRVGKK
                     VVAEIENPRFRASGASADEQAGVRRSFATSTIWMGDVAAENADGSFLVDLSGFVARDD
                     LGIARRLKEQEGGDYKLVPELSVADPNAARAFPKNVELVGRLTFTSAKPGPEVENIAP
                     ADGNVTLIVRHSLIALPEPGYVPRRRDPRAASIATQVVDFGAPLGSQIVYELATRFRL
                     EKTDPNAARSPVKKPIVFYIDRAAPEPIRTALVEGVAWWREAFDAAGLVDAFRVEILP
                     AGVDPLDIRYNVVNWVNRATRGWSYGQPIADPRTGEIVKGQVLLGSLRVRQDMIIYQA
                     LVGAGLTGSGDPNDPIAAALARIRQLGAHEVGHALGFAHNFAASTQGRYSVMDYPAPR
                     VRLVDGKPDLTDAYGVGIGPWDKFMVAWLYGARTDADAAPVMTAGLAQGLRFVPDQDA
                     RAADAAHPLGSLWDDAADPVAELRRVMGVRQAAVARFGPAALKAGDPQSQLRRAFVPI
                     WLLHRYQVEAASKLLGGVDFTYAVNGDGTGEAKPVAPARQREALDALLDTLSPAALTV
                     PAQLLPNLSAGWSGDD"
     gene            complement(2109..>3066)
                     /gene="nagA"
                     /locus_tag="VE567_09310"
     CDS             complement(2109..>3066)
                     /gene="nagA"
                     /locus_tag="VE567_09310"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008448 - N-acetylglucosamine-6-phosphate
                     deacetylase activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HYZ49076.1"
                     /translation="VNGGGNVLFNDAPTVEAIATIGAAHRRFGTTGFLPTLISDDLPV
                     IARAIDAVEAAIAEGIPGVLGIHIEGPFLNVERRGIHLASKIRTLDAEAVEVLTRLKS
                     GRTLITLAPEMTSPEMIRALVGRGAIVSAGHTDATYDDAVAAIDAGLTGATHLFNAMS
                     PLGNREPGMVGAVLDSDRVTAGIIVDGRHVSPATLRIALKARSPEAFMLVTDAMPTVG
                     GSDDFMLQGKHIRVLDGVCVDDQGTLAGSDLDMARAVSNAVALLGVPLPTALEMGSAV
                     PAAFLGLQSRYGRIAPGASASMVWLDDELGVKSAWVDGRRID"
BASE COUNT          514 a         1121 c          978 g          453 t
ORIGIN      
        1 gtcgtcgcca gaccagcccg ccgacaggtt gggcagtagc tgcgcgggta ctgtcagcgc
       61 cgccggcgac agcgtgtcga gcaacgcgtc gagcgcctcg cgctgccgcg ccggcgccac
      121 cggcttcgcc tcgcccgtcc cgtcgccatt cacggcataa gtgaaatcga cgccccccag
      181 cagcttcgac gccgcctcca cctgataacg gtgcagcagc catatcggca cgaaagcgcg
      241 gcggagctga gattgcgggt cgcccgcctt cagcgctgcc gggccgaagc gcgcgaccgc
      301 cgcctgccgc acgcccatca ctcgccgaag ctccgcgacc ggatcggcgg catcgtccca
      361 caggctaccg agcgggtgcg ccgcatccgc cgcccgcgca tcctggtcgg gcacgaagcg
      421 caggccctgc gccagccctg ccgtcatcac tggcgccgca tccgcatcgg tgcgcgcgcc
      481 ataaagccag gcgaccatga atttgtccca cggaccgatg cccacgccat aggcgtcggt
      541 caggtcgggc ttgccgtcca ccagccgcac gcgcggggcg ggatagtcca tcaccgaata
      601 acggccttgg gtgctcgccg cgaaattatg cgcaaagccc agtgcatggc cgacttcgtg
      661 cgcgccaagc tggcggatgc gcgcgagcgc cgcggcgatc gggtcgttcg gatcgccgct
      721 gccggtcagt cccgcgccca ccaacgcctg gtagatgatc atgtcctgcc gcacgcggag
      781 cgagccgagc agcacctggc ctttcacgat ctcgccggtg cgcggatcgg cgatcggctg
      841 gccataggac cagccccggg tcgcccggtt cacccagttg acgacattgt agcggatatc
      901 gagcgggtcc acgcccgcgg gcaggatctc gacccggaac gcgtcgacca ggcccgccgc
      961 atcgaacgcc tcgcgccacc aggcgacgcc ttcgaccagc gccgtgcgga tcggctccgg
     1021 cgccgcccgg tcgatataga agacgatcgg cttcttgacc ggcgagcgcg ccgcgttcgg
     1081 gtcggtcttt tccagccgga accgggtggc gagctcatac acgatttgcg agcccagcgg
     1141 cgcgccgaaa tcgacgacct gcgtcgcgat gctcgccgcc cgcggatcgc ggcggcgcgg
     1201 cacatagccg ggctccggca gcgcgatcag cgagtggcgc acgatcagcg tcacattgcc
     1261 gtccgcgggc gcgatattct cgacttccgg ccccggcttc gcgctggtga aagtcagccg
     1321 ccccaccagc tcgacattct tcggaaacgc gcgcgccgcg tttggatcgg cgacgctcag
     1381 ctccggcacg agcttgtaat cgccgccttc ctgctccttc agccgccgcg caatgccgag
     1441 atcgtcgcgc gcgacgaagc cggacagatc aaccaggaag ctcccgtccg cattctcggc
     1501 ggccacatcg cccatccaga tcgtcgaggt agcgaacgac cgccgcactc ccgcctgctc
     1561 gtccgccgac gccccgctcg cccggaaccg cggattctcg atctccgcga ccactttctt
     1621 gcccacccgc cggaacacca gcagccgcga ccccgagttt agcgcataat cgagccccag
     1681 cggcgccgac cccagccccg tctccagcgc gctcgtataa atgaaccgcc ccgacacgcc
     1741 ttccgcatcg ggcgccggca aggtggcaag gagccgcccg ctcttccggt ccacattgag
     1801 cgggatcaac ccggcctgcg ccgtcgtccc cgccaacacc ttcgccggcg gatcgagcgc
     1861 cagcgcgggg ccggccagca aggcggaggc aagtagcagc gcagcgaaac gaccggtcat
     1921 gttttcccct tcaggccaga cggatgaccc atagaggggg aggcgtgcgg cgtgcaaacg
     1981 acgtgaggac agcggtggcc gctggacatc agctatgcgc cccttcgcgg acataacggc
     2041 accacttgtc cagcgtccat cgatgcagtg ggcacaatat cgcccggcgt gcagttccaa
     2101 gcgtcgggct aatcgattcg gcggccatca acccaggcgg atttgacgcc aagctcgtcg
     2161 tccagccaaa ccatcgaagc ggaagcgccg ggcgcgatgc gaccgtagcg ggattgcagg
     2221 ccgagaaagg ccgccggcac ggccgagccc atttcaagcg ccgtcggtag cggcacgccc
     2281 agcagggcga ccgcgttcga gacggcgcgg gccatgtcca ggtccgaccc agcaagcgtg
     2341 ccctggtcgt ccacgcacac gccgtcgagc acgcggatat gcttgccctg gagcatgaaa
     2401 tcgtcactgc cgccaaccgt cggcatggca tcggtcacca gcatgaacgc ctcgggcgat
     2461 ctcgccttga gggcgatgcg gagcgtcgcg gggctgacat ggcgcccgtc tacgatgatg
     2521 ccggcggtca ccctatcgct gtcgagcacc gcccccacca tgcccggctc gcgattgccg
     2581 agcggcgaca ttgcattaaa caagtgcgtc gcgcccgtca gcccggcgtc gatcgccgca
     2641 accgcgtcgt cgtaagtcgc gtccgtatgg ccggcggaga cgatagcgcc gcggccgacg
     2701 agtgcgcgga tcatctccgg gctcgtcatt tcgggcgcaa gcgttatgag cgttcgaccg
     2761 cttttcaggc gcgtcagcac ctcgaccgct tcagcgtcga gcgtgcggat cttgcttgcc
     2821 aggtggatgc cgcgccgttc cacattcagg aacggtccct cgatatggat gccgagcacg
     2881 ccgggaatgc cctcggcaat cgcggcttcg acggcgtcga tcgcacgggc aatgaccggc
     2941 aggtcgtcgc tgatcaacgt cggcaggaac ccggtcgtgc cgaagcggcg atgggccgcg
     3001 ccgatggtcg cgatcgcttc gaccgtcggg gcgtcattga acagcacatt gccgccgcca
     3061 ttcacc
//
LOCUS       DASQVK010000431         4789 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_471011,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000431 DASQVK010000000
VERSION     DASQVK010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4789
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_471011"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..291
                     /locus_tag="VE567_09315"
     CDS             <1..291
                     /locus_tag="VE567_09315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013837036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkanesulfonate monooxygenase"
                     /protein_id="HYZ49077.1"
                     /translation="QKSLDSTSAGVYAQAALRDAADEEGFVEPQLWTGIGRARSGCGA
                     AIVGDPDQVLAKLSRYRDMGIEAFILSGYPHAAEADLFARHVLPRIEHRPLI"
     gene            370..1308
                     /locus_tag="VE567_09320"
     CDS             370..1308
                     /locus_tag="VE567_09320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HYZ49078.1"
                     /translation="MDRLLDFFRALGDPTRLRIFALLRRMELSVGELAQVLGQSQPRV
                     SRHVRILADAGLTTRRREGSWVFLALAEDPRIEPLLAAIEQTAGAWTEEDAARLDAIR
                     AERAEAAQRYFEAHADEWDALRSLYVSEQQVEAAMAELLGKRPVGCLVDLGTGTGRML
                     ELFGTQAARALGVDRSPEMLRLARAKLAEAVPSAELRQGDLTALPLPDGIADTVILHQ
                     VLHFVLQPGSALAEAARLVADGGRMLIVDFAPHEREELRTRDAHQRLGFSDAQIAGWL
                     NAAGLEIAAIKELEGSELTVKLWLAERPSAIREKAA"
     gene            1305..2246
                     /gene="metF"
                     /locus_tag="VE567_09325"
     CDS             1305..2246
                     /gene="metF"
                     /locus_tag="VE567_09325"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010403514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HYZ49079.1"
                     /translation="MTLSLAQMEEARRALDAPLFADLSGDVGVSFEFFPPKTEKMDAQ
                     LWDAIQTLAPLEPRFVSVTYGAGGSTRERTHATVARIQRETPLAAAAHLTCVEATRAE
                     IDAVAEQYWAAGVRHIVALRGDPPVMGAKFQPHPDGYANAAELVDGLRKLHPFEISVA
                     AYPEMHPDSGTLQTDLDNLKRKLDAGATRAITQFFFSPDCFFRFRDAVAAAGIESEIV
                     PGILPVSNVAQTRKFAGLCGAEIPGWMDRLFEGLDDHPAARQLVAATLAAELCRKLYA
                     GGVRHFHFYTLNRAELAYAICHLLGLRPVATAQEKAA"
     gene            2243..3298
                     /locus_tag="VE567_09330"
     CDS             2243..3298
                     /locus_tag="VE567_09330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013934653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HYZ49080.1"
                     /translation="MIQSEAAARFRAEAAQRILLTDGAFGTMIQAYRLAEADYRNGLE
                     LGHDQKGNNDLLVLTQPHVVAEITEAYLKAGSDIVSTNTFNANTISQADYGAEHLVRD
                     INLAAAQIARDAARTAEAKDGRPRFVAGALGPTNKTLSLSPDVNDPGYRAISFDELKN
                     VYREQIEALLDGGVDFILIETIFDTLNAKAGILAAIEAGVARGQEVPLMISFTITDMS
                     GRNLSGHSIESFWATVRHAKPLTIGMNCSFGAPQLRPSVAALSPIADTLLMAYPNAGL
                     PNDLGAYDELPETTASFMRDWADEGLVNIIGGCCGTTPDHIRAMANAVAGKTPRAIPA
                     AKRQTFLAGLDPMRIAA"
     gene            3307..>4789
                     /locus_tag="VE567_09335"
     CDS             3307..>4789
                     /locus_tag="VE567_09335"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017669625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HYZ49081.1"
                     /translation="MATAYKEEPEAAPQSAVFVNIGERTNVTGSAAFKKLIMAGDYTR
                     AVEVARQQVENGAQIIDVNMDEGLLDAEQAMTTFLKLIAAEPDIARVPVMVDSSKWSV
                     IEAGLKCVSGKPVVNSISMKEGEDAFLDHARKVMAYGAAVVVMAFDETGQADTKDRKV
                     EICERAYKLLTGIGFPPEDIIFDPNIFAVATGIDEHRRYAIDFIEACREIKARCPHVH
                     ISGGVSNLSFSFRGNEPVRRAMHSVFLYHAIQAGMDMGIVNAGQLDVYDAIDPELREA
                     CEDVIWDRREDATERLIALAEKYRGGDAVADKQAEEWRSWPVAKRLEHALVKGIDAFV
                     VEDTEEARQHFARPIEVIEGPLMDGMNVVGDLFGSGKMFLPQVVKSARVMKKAVAHLL
                     PYIEAEKDANARGKGRIVMATVKGDVHDIGKNIVGVVLQCNGFEVIDLGVMVPWTKIL
                     EVANENEADMIGLSGLITPSLDEMVTVAEEMQRAGLTIPLLIGG"
BASE COUNT          866 a         1514 c         1598 g          811 t
ORIGIN      
        1 cagaaatcgc tcgattcaac ctcggccggc gtctatgccc aggcggcgtt gcgcgacgcg
       61 gcggacgagg aaggctttgt cgagccgcag ctctggaccg gcatcggccg tgcacgctcg
      121 ggctgcggcg ccgcgatcgt cggcgatccc gaccaggtgc tggcgaagct tagccgctat
      181 cgggacatgg ggatcgaggc gttcattctc tccggctacc cgcacgcggc ggaggccgac
      241 ctgttcgcgc ggcatgtgct gccgcggatc gaacataggc cgctgattta gcgaagcgat
      301 tgttgcgacc agaagatccg ccgcgttcca cgcttgctta gatataaaga tatctttata
      361 tcctaaagcg tggatcggct gctcgacttt ttccgtgctc ttggtgaccc gacgcggctg
      421 cggattttcg cattgctgcg gcggatggaa ctgtcggtgg gggagctcgc acaagtgctg
      481 gggcagagcc agccgcgcgt ctcccgccat gtccgcatcc tcgccgacgc cgggctgacg
      541 acgcggcggc gtgaaggaag ttgggtgttc ctggcgctgg ccgaggatcc gcggatcgag
      601 ccgctgctcg cagcgattga acagacggcg ggcgcttgga ccgaggaaga tgcggcgcgg
      661 ctggacgcca tccgcgcgga acgcgccgaa gcggcgcaac gttatttcga ggcgcatgcc
      721 gacgaatggg acgcgctccg ctcactttac gtctccgagc agcaggtcga agcggcgatg
      781 gccgagctgc tgggcaagcg gccggtcggg tgtctcgtgg atcttggtac cggcactggc
      841 cggatgctcg aattgttcgg gacccaggcc gcgcgtgctc tgggcgtcga ccgcagcccg
      901 gaaatgctgc gcctcgcccg cgccaaactt gccgaagcag taccatcggc ggagctgcgc
      961 cagggcgacc tcaccgccct ccccttgccc gacggcatcg cggacacggt gattctgcat
     1021 caggtgctgc acttcgtgtt gcagccaggg tcggcactgg cggaagcggc gcggctggtc
     1081 gcagacggcg ggcggatgct gatcgtcgat tttgcgccgc acgagcgcga ggagctgcgc
     1141 acccgcgatg cgcaccagcg gctgggcttt tccgatgcgc agatcgcggg ctggctgaac
     1201 gctgctggcc tggaaatcgc agcgattaag gaactcgaag ggagcgaact gacagtgaag
     1261 ctctggttgg ccgaaaggcc gagcgcgatc cgggagaaag ccgcatgacc ctatcgcttg
     1321 cgcagatgga ggaagcgcgt cgcgccttgg acgcgccctt gttcgccgat ctttccggcg
     1381 atgtcggcgt gtcgttcgaa ttcttcccgc ccaagacgga aaagatggac gcacagctct
     1441 gggatgcgat ccagacgctc gcgccgttgg agccgcgctt cgtttcggtc acttacggcg
     1501 caggcggctc gacgcgcgag cggacgcacg ccaccgttgc acgtatccag cgcgaaacgc
     1561 cacttgcggc ggccgcccac cttacctgcg tggaagcgac acgggccgaa atcgatgccg
     1621 tcgccgagca atattgggcc gccggcgtgc gacacatcgt cgcgctacgg ggcgacccgc
     1681 cggtgatggg ggccaagttc cagccgcacc ccgacggcta tgccaatgcg gccgagctgg
     1741 tcgatggtct ccggaagctt cacccgttcg agatttcggt cgcggcctat ccggaaatgc
     1801 acccggattc ggggacgctg caaaccgatc tcgacaatct gaagcgcaag ctggatgcgg
     1861 gcgcgacgcg agcgatcacc cagtttttct tttcgcccga ttgcttcttc cgcttccgcg
     1921 acgcagtggc cgcggcgggg attgaatcgg agatcgtgcc cggcatcctg ccggtgtcga
     1981 acgtcgccca gactcggaaa ttcgctggtc tctgcggggc cgagattccg ggctggatgg
     2041 accggctgtt cgaggggcta gacgatcatc cggccgcgcg ccagctcgtg gccgcgacgc
     2101 tcgcggccga actctgccgc aagctctatg cgggcggcgt ccggcatttc cacttctaca
     2161 ccctgaaccg cgccgagctg gcctatgcca tctgtcattt gctgggcctg cggccggtcg
     2221 ccaccgctca ggagaaagcg gcatgatcca atctgaagca gcagcccggt tccgcgccga
     2281 agccgcgcag cgcatcctgc tcaccgacgg cgccttcggc acgatgatcc aggcctatcg
     2341 gctggcagag gccgattatc gcaacggcct ggagctcggc catgaccaga aaggcaataa
     2401 cgaccttctc gtgctgaccc agccgcatgt cgtcgccgag atcaccgagg cctatctgaa
     2461 ggcaggctcg gacatcgttt cgaccaatac gttcaatgcc aacacgatca gccaggcgga
     2521 ttacggggcc gagcatctgg tgcgcgacat caacctcgcc gccgcgcaga tcgcccgcga
     2581 tgccgcgcgg acggctgaag cgaaggacgg gcggccgcgc ttcgtcgccg gcgcgctggg
     2641 gcccaccaac aagacgcttt ccctgtcgcc cgacgtcaac gaccccggct atcgcgcgat
     2701 cagcttcgat gagttgaaga acgtgtatcg cgagcagatc gaggcgctgc tggacggggg
     2761 cgtcgacttc attctgatcg agacgatctt cgacactttg aacgccaagg cgggcatttt
     2821 ggcggcgatc gaggcgggcg tggcgcgagg ccaggaggtc ccgttaatga tcagctttac
     2881 gattaccgat atgtcggggc ggaacctgtc ggggcattcg atcgagagct tctgggccac
     2941 ggtgaggcat gccaagcctt tgacaatagg gatgaattgt tcgttcggtg cgccgcagct
     3001 gcggcccagc gtcgcggcgc tgtcgccgat cgcggacacg ctgctgatgg cctatccgaa
     3061 cgccgggctg ccgaacgacc tcggcgctta tgacgagctg cccgagacca ccgcgagctt
     3121 catgcgcgac tgggccgatg aaggcctggt caacatcatc ggcggctgct gcggcactac
     3181 gcccgatcac attcgggcga tggcgaacgc cgtggcgggc aagacgccgc gcgcaatccc
     3241 ggcggcgaag cgccagacgt tcctcgccgg cctcgacccc atgcggatcg cggcctgaga
     3301 ccagccatgg ccactgctta caaggaagag cccgaagcgg ctccgcaatc cgccgtgttc
     3361 gtcaatatcg gcgagcgcac caacgtcacc gggtcggcgg ctttcaagaa gctgatcatg
     3421 gccggcgact ataccagggc agtcgaagtc gcgcgccagc aggtcgagaa cggcgcccag
     3481 attatcgacg tcaacatgga cgaaggcctg ctcgatgccg agcaggcgat gacgactttc
     3541 ctgaagctga tcgccgccga gccggacatc gcccgcgtgc cggtgatggt cgactcgtcc
     3601 aaatggtcgg tgatcgaggc tggactgaaa tgcgtctcgg gcaagccggt cgtcaattcg
     3661 atcagcatga aggaaggcga ggacgcgttc ctcgatcatg cccgcaaagt catggcctat
     3721 ggcgcggccg tcgtggtcat ggccttcgac gaaacgggcc aggcggacac gaaggaccgc
     3781 aaggtcgaga tttgcgagcg ggcctataaa ctgctgaccg gcatcggctt tccgcccgaa
     3841 gacatcatct tcgaccccaa tatcttcgca gtcgcgaccg ggatcgacga gcatcgccgc
     3901 tatgcgatcg acttcatcga ggcatgccgc gagatcaagg cgcgctgccc gcatgtccat
     3961 atctcgggcg gcgtttcgaa cctgtctttc agcttccgcg gcaacgagcc ggtgcgccgg
     4021 gcgatgcaca gcgtattcct ctaccacgcc atccaggcgg gcatggacat gggcatcgtc
     4081 aatgccggcc agctggacgt ctatgacgcg atcgacccgg agctgcgcga agcctgcgag
     4141 gacgtcatct gggatcggcg cgaggacgcg accgagcggc tgatcgcgct cgccgagaaa
     4201 tatcgcggcg gcgacgcggt cgccgacaag caggccgagg aatggcggag ctggccggtc
     4261 gccaagcggc tcgagcacgc gctcgtcaaa ggcatcgacg ccttcgtggt cgaagacacc
     4321 gaggaagcgc gccagcactt cgcgcgaccg atcgaagtga tcgaagggcc gctgatggac
     4381 ggcatgaacg tcgtcggcga cctgttcggc tccggcaaga tgttcctgcc ccaggtcgtg
     4441 aagtcggccc gcgtgatgaa aaaggctgtc gcccacctcc tcccctatat cgaggcggag
     4501 aaggacgcga acgcgcgcgg caagggccgg atcgtgatgg cgaccgtcaa aggcgacgtc
     4561 cacgacatcg gcaagaacat cgtcggcgtc gtgctccagt gcaacggctt cgaagtgatc
     4621 gacctgggcg taatggtgcc ctggaccaag atcctggagg tggccaacga gaatgaggcg
     4681 gacatgatcg gcctttccgg cctgatcacg ccctcgctcg acgagatggt gacggtcgcc
     4741 gaggaaatgc agcgcgcggg gctgaccatt ccgttgctga tcggcggcg
//
LOCUS       DASQVK010000432         3200 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_471019,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000432 DASQVK010000000
VERSION     DASQVK010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3200)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3200)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3200
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_471019"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1374)
                     /locus_tag="VE567_09340"
     CDS             complement(<1..1374)
                     /locus_tag="VE567_09340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family N-terminal
                     domain-containing protein"
                     /protein_id="HYZ49082.1"
                     /translation="MSTYEARLAALREQLKRDRLDGFVVPLTDEHMSEYVGAYAQRVA
                     WLTGFQGSAGTAVVLPEEAAIFIDGRYTLQVREQVDPKHWAYVSVPETSVSEWLGEHA
                     SGGARIGYDPWLHTRAWVEAATKALKEKGAELVAVDTNPVDAVWPDRPEPSRARLVVH
                     PDQYAGRNSAEKRAEIADWLAAKNADAVVLSALDSIAWTFNVRGKDVEHTPVALAYAL
                     VNRDGTADLFVQPEKVREDVAQHLGNAVRLHDRAEFPKALAGFAGKRVAVDPERAVAA
                     IFERLEKGGAQALQLRDPAVLAKAIKNPVEVAGHQAAQARDGAAIVRFLHWLSAEAPK
                     GGLDELTASDKLESLRRETGLLEDLSFDTISGAGPNGAIVHYRASPETNRKLELNSLY
                     LIDSGGQYRDGTTDITRTVVIGEPTAEMCDRFTRVLKGHIAIATALFPKGTRGQQIDA
                     FARRPLWE"
     gene            complement(1612..1992)
                     /locus_tag="VE567_09345"
     CDS             complement(1612..1992)
                     /locus_tag="VE567_09345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49083.1"
                     /translation="MQNQGGGGQTGTRDVTYNLTTVLYHALQGVENCRTYEQDAQGDQ
                     QYARFFQQAGQMQQQLAEEAKRLLHDCLMRETQGGQGGSGSAFSFGQQGSSNIGQQSE
                     TGSTGMGSASGQQTSGGTGGPSGY"
     gene            complement(2088..>3200)
                     /locus_tag="VE567_09350"
     CDS             complement(2088..>3200)
                     /locus_tag="VE567_09350"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011445665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HYZ49084.1"
                     /translation="VPYIAAAGELKTKPTQHSVRELTGLGIQPDVLVCRCEHPLPEGE
                     RAKIALFCNVRKEAVIPALDAKSIYGVPLQYHAEGLDNEVLRAFGIEAGATRPNLARW
                     TDIMDRMQNPEGEVTIGVVGKYVGLPDAYKSLHEALVHGGIANRVKVNIQWLDAELFE
                     SDEEGVAAQLEPMHGILVPGGFGERGSEGKINSVKFARERNVPFFGICLGMQMACIEG
                     ARNVGGLDKASTTEFGPTSEPIVGLITEWMSREGLQRREANGDLGGTMRLGAYPAVLN
                     GNSVVASVYGETEISERHRHRYEVNVHYRDVLEKGGLLFAGMSPDGALPEIVERPDHP
                     WFIGVQFHPELKSKPFDPHPLFASFVEAAVRQSRLV"
BASE COUNT          491 a         1119 c         1012 g          578 t
ORIGIN      
        1 ctcccagagc ggccggcgcg cgaacgcgtc gatctgctgc ccgcgcgtgc ctttcggaaa
       61 gagcgcggtg gcaatggcga tatggccttt cagcacgcgc gtgaaccggt cgcacatctc
      121 ggcggtcggc tcgccaatca cgaccgtgcg cgtgatgtcg gtggtgccgt cgcgatactg
      181 gccgcccgaa tcgatcagat agagcgagtt gagctccagc ttccggttcg tctcgggcga
      241 ggcgcgataa tggacgatcg ccccgttcgg ccccgccccc gagatggtgt cgaacgacag
      301 atcctcgagc agcccggtct cgcggcgcag gctctccagc ttgtccgatg ccgtcagctc
      361 atccagcccg cccttgggcg cttccgccga cagccaatgg aggaagcgca cgatcgccgc
      421 cccgtcgcgc gcctgcgccg cctggtgccc ggccacctcg acggggttct tgatcgcctt
      481 ggcgagcact gcgggatcac ggagctgaag cgcttgtgcc ccgcccttct ccagccgctc
      541 gaaaattgcc gcgaccgccc gctcgggatc gaccgcgacc cgcttgcccg caaagcccgc
      601 cagcgccttg gggaattccg cacggtcgtg caggcgcacg gcgttgccca gatgctgggc
      661 gacatcctcg cggacctttt cgggctggac gaacagatcg gcagtgccgt cccggttcac
      721 cagcgcatag gcaagcgcga ccggcgtatg ctcgacgtcc ttgccgcgca cattgaaggt
      781 ccaggcaatc gagtcgagcg ccgagagcac cactgcgtcc gcgtttttcg cggcgagcca
      841 gtcggcgatc tcggcgcgct tctccgccga attcctgccc gcatattggt ccgggtgcac
      901 gaccagccgc gcgcgcgacg gctcgggccg gtccggccac accgcgtcga cgggattggt
      961 gtcgaccgcg accagctcgg cgcctttctc cttcagcgcc ttggtcgccg cctccaccca
     1021 ggcgcgggta tgcagccacg ggtcgtaacc gatccgcgcg ccgcccgacg catgctcgcc
     1081 cagccattcc gagaccgagg tttccggcac cgatacatag gcccagtgct tcggatcgac
     1141 ctgttcccgc acctgcagcg tgtaacgccc gtcgatgaag atcgccgctt cttccggcag
     1201 cacgaccgcc gtgcccgcgg agccctgaaa gccggtcagc caggcgaccc gctgggcata
     1261 agcgcccaca tattcgctca tatgctcgtc ggttaagggc acgacaaacc cgtccagccg
     1321 gtcacgcttc agctgctcgc gaagggcggc aagacgcgct tcataggtgg acatggggca
     1381 ctcctctcat gcggtttgag agtgcatgta aaacccccag ccccgctcgt catcccgaac
     1441 ttgtttcggg ataagccgcg agcagctccg cgccgggact tggttcggcc ggggggcttg
     1501 gttcgcaagc gccgcctgcc tctcccttgt cccggaacaa gttcaggatg acgggtggag
     1561 tactgtagag atgacagtgg agcgcggcgg atcggccgcg ctccagtcca ctcaatagcc
     1621 gctcggaccg ccggtcccgc cggacgtctg ctggcccgat gccgagccca tgcccgtcga
     1681 gccggtttcg ctctgctggc cgatattgct cgatccctgc tggccgaagc tgaaggcgct
     1741 gccggagccg ccttgcccgc cctgggtttc acgcatcagg cagtcgtgaa gcagccgctt
     1801 ggcctcttcg gcgagctgct gctgcatttg cccggcctgc tgaaagaatc gcgcatattg
     1861 ctggtcgcct tgggcgtcct gctcgtaggt cctgcaattc tcgacgccct gcagtgcgtg
     1921 gtacagcacc gtcgtcagat tataggtcac atcgcgcgtg ccggtctggc cgccgccgcc
     1981 ctggttctgc atccgatcct cctgcctaac ggcgcgaggc aatccgcctc gcgtcgaagg
     2041 actcgaacgg ggcgcgagcc cagccgttcc ggccattacg cgcccgatca gaccagacgg
     2101 ctctgcctca ctgccgcttc gacgaagctg gcgaacagtg ggtgcggatc gaatggcttg
     2161 gatttgagct cggggtggaa ttgcacgccg ataaaccagg gatggtcggg ccgctcgacg
     2221 atctccggca gcgcgccgtc cgggctcatg ccggcaaaga gcaggccgcc tttctccagc
     2281 acgtcgcgat aatggacgtt gacctcgtag cggtggcggt ggcgctcgct gatctcggtc
     2341 tcaccataga cggaggcgac gacgctattg ccgttcagca ccgccggata ggcgcccagc
     2401 cgcatcgtgc cgccgagatc gccgttggcc tcgcgccgct gcagcccctc gcgagacatc
     2461 cattccgtga tgaggccaac gatcggctcg ctcgtcgggc cgaattccgt tgtcgacgcc
     2521 ttgtccagcc cgccgacgtt ccgcgcgcct tcgatgcacg ccatctgcat gccgaggcag
     2581 atgccgaaga acggcacgtt ccgctcgcgg gcgaatttga cgctgttgat cttgccttcg
     2641 gacccgcgct cgccgaaccc gcccgggacg agaatgccgt gcatcggctc gagctgcgcg
     2701 gcgacacctt cctcgtcgct ttcgaacagc tcggcgtcga gccactggat gttgaccttc
     2761 acccggttgg cgatgccgcc atgcaccagg gcttcgtgca gcgacttata ggcgtccggc
     2821 aggcccacat atttgccgac cacgccgatc gtgacttcgc cttccggatt ctgcatccgg
     2881 tccatgatgt cggtccagcg cgccaggttc ggccgcgtcg cgccggcctc gatgccgaaa
     2941 gcgcgcagca cttcgttgtc gaggccctcg gcatgatatt ggagcggcac gccatagatg
     3001 ctcttggcgt cgagcgcggg gatcaccgct tccttgcgga cgttgcagaa cagcgcgatc
     3061 ttggcgcgtt cgccctcggg cagcggatgt tcgcagcggc acaccagcac atcgggctgg
     3121 atgccgagcc cggtcagctc gcggaccgaa tgctgggtgg gcttggtctt cagctcgccg
     3181 gccgccgcga tatacggcac
//
LOCUS       DASQVK010000433         3317 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_154894,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000433 DASQVK010000000
VERSION     DASQVK010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3317
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154894"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            148..474
                     /locus_tag="VE567_09355"
     CDS             148..474
                     /locus_tag="VE567_09355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011540669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1476 domain-containing protein"
                     /protein_id="HYZ49085.1"
                     /translation="MTTFDDRERAFEAKFARDEEMLFRVIARRNRLLGQWAAEKMGLN
                     PAETDAYAKAVVQAEFEEAGDEDVIRKLLGDLIAAGVDIDEATVRQALHDQTVEARRQ
                     LIEAQS"
     gene            476..715
                     /locus_tag="VE567_09360"
     CDS             476..715
                     /locus_tag="VE567_09360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family transcriptional regulator"
                     /protein_id="HYZ49086.1"
                     /translation="MPMPADQIEAMIRAGIPDAHVEITDLAGDGDHYAARVVSESFRG
                     LPRVRQHQKVYAALQGRMGGELHALQLTTAVPAGE"
     gene            717..1049
                     /gene="grxD"
                     /locus_tag="VE567_09365"
     CDS             717..1049
                     /gene="grxD"
                     /locus_tag="VE567_09365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017672388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HYZ49087.1"
                     /translation="MTDDAQARIQELVSSNDVLLFMKGTPLFPQCGFSSRAIAILDRL
                     GVDYESVDVLQDQGIRQGIKAFSDWPTIPQLYVKGEFVGGSDIMMEMYESGELAELLA
                     DKGVAKVG"
     gene            1065..1289
                     /locus_tag="VE567_09370"
     CDS             1065..1289
                     /locus_tag="VE567_09370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49088.1"
                     /translation="MSGFAPAMGKKSKSKRGGLGGLLRHPVVHEALADVIAAAIVALA
                     AAIGKNARVRREAARLKREGEAKLAELGRR"
     gene            1629..1997
                     /locus_tag="VE567_09375"
     CDS             1629..1997
                     /locus_tag="VE567_09375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BlaI/MecI/CopY family transcriptional regulator"
                     /protein_id="HYZ49089.1"
                     /translation="MAERISEAEHAVMEVLWEEQPLTAAEVAERAGPKRGWSVHTVKT
                     LLSRLLAKGAIAHEAEGRRFLYRPVIERDAYVGRESEKLVDRLFGGRVTPLIAHLAER
                     RALSPEDIAELEALLRELKP"
     gene            1994..>3317
                     /locus_tag="VE567_09380"
     CDS             1994..>3317
                     /locus_tag="VE567_09380"
                     /inference="COORDINATES: protein motif:HMM:NF017390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M56 family metallopeptidase"
                     /protein_id="HYZ49090.1"
                     /translation="MIEWAVETFAASTLLMLVVLIVRRPVARLFGPHIAYGLWLLPAL
                     RMVLPPLPETVAPAPLRIMPAHITMADVEALIATPIPAAAPAEPLVDWPLLLGLLWAG
                     GALLFLGWHVLAYRRFVQTALDQATQLPRLDRGRVEVCASPVARGPFAAGIFLKTVVL
                     PEDYRRRYARDELRLAIEHEVQHHHRCDMSANFAALVVLALHWWNPIAHFAHRAFRVD
                     QELACDAAVLARATPAERHAYGSALLKSACDRLPVAACALGAGDDLKRRLRMMRVYRW
                     SPMRTRMGSLIAAGLVGGGLILTASNGIAAETTKKVENQVRTALAPIVTEVVPEAPAA
                     ALPAPRAPVAPRALHVAHVLAAPEAPDVPLAPVAPEAPVAPAALVSVAWTQDSGQYVD
                     AGEIDREVNDAVRDARREADAAAREARAEAVVAARDAAAEARSQAAEVR"
BASE COUNT          546 a         1110 c         1097 g          564 t
ORIGIN      
        1 gccccaaccg tcattccgga cttgatccgg gatccatgaa ctccggccgg gacagctatt
       61 ctcgggtgct gacccgccgc atgctcccgc ccgcttgctc ccgggctcgc ccgaacctat
      121 ctcccaaccg aaacaagagg ggtgtgcatg accacgttcg atgatcgcga acgcgcattc
      181 gaagccaaat tcgcccgtga cgaggagatg ctgttccgcg tcatcgcgcg ccgcaaccgg
      241 ctgctcggcc aatgggctgc cgagaaaatg ggcctgaacc ccgccgagac tgacgcctat
      301 gccaaggccg tcgtccaggc cgagttcgag gaagcggggg acgaggatgt gatccgcaag
      361 ctcctgggcg acctgatcgc cgccggcgtg gatatcgacg aggcgaccgt gcgccaggcg
      421 ctccacgatc agacagtcga agcgcgccgc cagctgatcg aggcgcagtc ctgacatgcc
      481 gatgcccgcg gaccagatcg aagcgatgat ccgtgccggc atccccgacg cgcatgtcga
      541 gatcaccgat ctcgcaggcg acggcgacca ttacgccgcg cgcgtcgtct cggagagttt
      601 tcgcggcctg ccgcgcgtgc gccagcacca gaaagtctat gctgcgctcc agggccgcat
      661 gggcggggag cttcacgcac tgcaactgac caccgccgtt ccggcaggag agtgacatga
      721 ccgacgacgc tcaggctcgc atccaggagc tggtttcttc caacgacgtg ctgctgttca
      781 tgaaaggcac tccgctcttt ccccaatgcg gcttttccag ccgcgccatc gcaatcctcg
      841 accggctcgg cgtcgactat gaaagcgtcg acgtgctgca ggatcaaggc atccgccagg
      901 gcatcaaggc gttcagcgac tggccgacca ttccccagct ttacgtgaag ggggagttcg
      961 tcggcggctc ggacatcatg atggaaatgt acgaaagcgg cgagctggcc gagctcctcg
     1021 ccgacaaagg cgtcgcgaag gtcgggtaag gaacttcgcc gcccgtgtcg gggttcgcac
     1081 cggcgatggg caaaaagtcc aaatcgaaac gcggcggcct gggcggcctg cttcgccacc
     1141 cggtcgtgca cgaagcgctg gccgacgtga tcgccgccgc gatcgtcgcg ctcgccgccg
     1201 ccatcggcaa gaatgcccgc gtccgccgcg aggccgcgcg gctgaagcgc gaaggcgaag
     1261 cgaaactggc cgagcttggc aggcggtaga gcggctcaag tcgatttggc gccctctcgg
     1321 tccagtggcc caatgcgccg atccctcgat acgccgtctg atacaagctg cggcgctact
     1381 cggctactcg ggacgaacgg acctgggtta gacaggggta agcgaggctg ttcggcgtat
     1441 tgagacctgc ccccctaagg gatctcacga ccgatcccct gccgcatttg acgcttgacg
     1501 cctttgccga cagctcgatg gtcgcaatta agagcaactc ggcccggtag ctggacaggc
     1561 gtcattcatt gactgttcag caaaacgatg acatctgtag tcgtaatcac ggcgcaaagg
     1621 gttggggaat ggctgaacgc atcagtgaag ccgagcatgc agtgatggaa gtgctctggg
     1681 aggagcagcc attgactgct gccgaagtcg ctgagcgcgc cggcccaaag cgcggctgga
     1741 gcgtccatac cgtcaagacc ttgctctcgc gcctgctcgc caagggcgcg atcgcgcatg
     1801 aagcggaggg gcgccgcttc ctctaccgtc cggtgatcga gcgcgacgcc tatgtgggtc
     1861 gcgaatccga aaagcttgtc gaccggctgt tcggcggccg ggttacgcct ctgatcgcgc
     1921 atctcgccga acgccgtgcg ctttccccgg aagatattgc agaactcgaa gctttgctca
     1981 gggagctgaa gccatgatcg agtgggccgt cgagacgttc gccgccagca cgttgctgat
     2041 gctggtcgtc ctcattgtgc gccggccggt ggcgcgcctg tttgggcctc acatcgccta
     2101 tggcctgtgg ttgctgccgg cgctccgcat ggtgctgccg ccgctacccg aaaccgtcgc
     2161 gccggcaccg ctccgcatca tgcccgcgca catcaccatg gcggatgtcg aggcgttgat
     2221 cgccacgccg atcccggccg cggcgccggc cgagccgctg gtcgactggc cgctgctgct
     2281 cggtctgctc tgggcgggcg gcgccttgct gttcctgggc tggcatgtct tggcttatcg
     2341 ccgcttcgtc cagaccgcgc tcgatcaggc gacccagctg ccgcgcctgg accgcggccg
     2401 tgtggaagtc tgcgcgagcc cggtcgcccg cggcccgttc gccgcgggca ttttcctgaa
     2461 aacggtcgtg ctgccggagg attatcgccg ccgctatgcc cgcgacgagc tgcgcctcgc
     2521 gatcgagcac gaggtccagc atcaccatcg ttgcgacatg tccgccaatt tcgccgcact
     2581 ggtcgtgctg gctttgcact ggtggaatcc gatcgcgcat ttcgcgcacc gcgccttccg
     2641 tgtcgatcag gaacttgcct gcgatgccgc cgtgctggcg cgcgccacgc ctgccgagcg
     2701 ccacgcctac gggtcggcgc tgctgaaatc cgcctgcgac cgcctgccgg tggccgcttg
     2761 cgctcttggg gccggggatg acctcaagag gagactgaga atgatgcgtg tctatcgttg
     2821 gagcccgatg cggacgcgaa tgggcagcct gattgcggcc ggcctggtcg ggggcgggct
     2881 gatactgacg gcgtcgaacg gcatcgctgc cgagacgacc aagaaagtcg agaatcaggt
     2941 tcgcacggcg ctcgcgccga tcgtgaccga ggtcgtgccg gaagcgcctg ccgctgcttt
     3001 gccggcgccg cgcgcgcccg ttgctccgcg cgcgctgcac gttgcgcatg tccttgccgc
     3061 tccggaggcg cccgacgttc cgctcgcacc cgtcgctccc gaagcgccag ttgccccggc
     3121 cgcgctcgtt tccgtcgcct ggacgcaaga cagcggtcaa tatgtcgacg ccggcgagat
     3181 cgatcgcgaa gtgaacgatg cggtccgcga tgcgcgccgt gaggcggacg cagcggcgcg
     3241 cgaggcccgg gccgaggcgg tggtcgccgc gcgcgacgcc gcagcggaag cgcgcagcca
     3301 ggcggccgag gtccgcg
//
LOCUS       DASQVK010000434         3372 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_315147,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000434 DASQVK010000000
VERSION     DASQVK010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3372
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_315147"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(133..990)
                     /locus_tag="VE567_09385"
     CDS             complement(133..990)
                     /locus_tag="VE567_09385"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HYZ49091.1"
                     /translation="MLLTAVEGEAARELSPAIAWPTIALTAVLVPLHVGLIALGLSGA
                     FSPWWLTLPLGVSAYLHYTPVHEAIHRNIVRSRRFDPANAAIGWWGALLTGMTWPLVA
                     RTHIAHHAHTNDERDPDIFVRGSLVRLIALAMLSTLTNLVPVPVWRLICNKKPPKLGY
                     LDAWKNMPASEWRLHQAAHGLMCVGVWSAVALGKGEAAFALYVVPATIGRFLMGFLLN
                     WLPHQPWAAGDRYLTTSLRKGRLLALFSVGHNMHLIHHLWPGVPFYRYRALYLRLAPV
                     LHERGVELV"
     gene            1169..1981
                     /locus_tag="VE567_09390"
     CDS             1169..1981
                     /locus_tag="VE567_09390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYZ49092.1"
                     /translation="MSRLVIFGPGYTGARIAAAVERLDWRVVRIGREQLDRAQPEIAA
                     ATHILSTVPPGEEGDPVLARYHDAIRRSGAWLGYLSSTGVYGDTGGAWVDESASVGLG
                     RRSARAAADLAWLDLGARAFRLPGIYGPGRSPLERIAEGAAYRIDRPGQVFSRVHIDD
                     IVAAVLAGFAGPPGAYNIADDLPAPQHEVTAYAARLLGAPLPPLRAPDELPPSARAFY
                     LENRRIANRKAKRLLDWRPTYRTYREGLRALSATISPASVSSPPSTAANDQR"
     gene            complement(1891..2769)
                     /locus_tag="VE567_09395"
     CDS             complement(1891..2769)
                     /locus_tag="VE567_09395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HYZ49093.1"
                     /translation="MLIPFIIITLIWGSTWLVIRDQLGVVPPSWSVTYRFATASAAMF
                     VYAAVTRTPLRVGRQVWPVILLIAFAQFVANFNLVYRAEAYVTSGLVAVVFALLVVPN
                     AILARLFLKQRLSRPFLAGSAVALVGIGMLFAHEMRLDGADNGAVFSGVGLTLLAVVA
                     ASAANIAQATERARGIPVAALIAWSMAVGTLSNAAIAWTVTGSPVFDPRPSYLAGVLY
                     LGLVASALAFMLYYRIIREIGAARAAYSSVLIPIIAMALSTVFEGYRWSFAAVLGGLL
                     TLAGLIVALSARRPSR"
     gene            complement(2805..>3372)
                     /locus_tag="VE567_09400"
     CDS             complement(2805..>3372)
                     /locus_tag="VE567_09400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019052282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="beta-eliminating lyase-related protein"
                     /protein_id="HYZ49094.1"
                     /translation="AYTPDEVAALGETAKRRGLGFHMDGARFANAVAHLGCTPADLTW
                     RGGVDALSFGFVKNGGLCAEALIFFRPELAEATLYRRKRAGHLFSKGRYLAAQLLAML
                     EDGLWLDNARAANRGAALLAQAAGARLVHPVQANEVFLQVSADEAARLRALGFDFYDW
                     GVGEARLVVSWEQSEDAIRPLAEAIAAL"
BASE COUNT          608 a         1208 c         1069 g          487 t
ORIGIN      
        1 tgtggtcgtc acgatgtgca tcggcggcgg ccagggcgct gccggcctgt tcgaagtgtt
       61 ctgacgatcg ggtggcggac taggcgttcc tccgttcgtt tggcgcgaag tcgagaaacg
      121 aacggagccg actcagacca gctcgactcc ccgctcgtgc aggactggcg caagccgcag
      181 gtagagcgcg cgatagcggt agaagggcac gcccggccaa agatggtgga tcaggtgcat
      241 attgtggccg acgctgaaca gcgccagcag ccgccccttg cgcaaggaag tggtcaggta
      301 gcggtcgccc gcggcccagg gctggtgcgg tagccaattg agtaggaacc ccatcaggaa
      361 ccgcccgatt gtcgccggga cgacgtagag cgcgaaagcc gcctctccct tgccgagcgc
      421 gactgcgctc cacacgccca cgcacatcag gccgtgcgcg gcctggtgca gccgccactc
      481 gctcgcaggc atgtttttcc aggcgtcgag gtagccgagc ttcggcggct tcttgttaca
      541 gatcaaccgc cagaccggca ccggcaccag gttggtaagc gtcgacagca tcgccagcgc
      601 gatcagccgc acgagcgatc cgcgaacgaa aatgtccgga tcgcgctcat cattcgtatg
      661 tgcgtggtgc gcgatgtgcg tgcgcgcgac cagcggccag gtcatgcccg tcagcagcgc
      721 gccccaccag ccgatcgccg cgttcgccgg atcgaagcgg cgcgagcgta cgatgttgcg
      781 atggatcgcc tcgtgcaccg gcgtgtaatg aagataggcg gaaaccccga gcggcagggt
      841 cagccaccag ggcgaaaacg cacccgacag ccccagcgcg atcaagccga catggagcgg
      901 aaccagcacg gccgtcagcg cgattgtcgg ccaggcgatc gccggcgaca attccctcgc
      961 tgcttcacct tcgacggccg tcaagagcat cgttgtttcc ttcccccctg tgcaggggaa
     1021 gtaagcaagg ctggttaaca aagttttgcg cacaggcccc taacgggcct taaatgcttc
     1081 cgttcgggat caactttcct cgacaatgga tgaagttgcc gccaatccca ctccccgcgg
     1141 agggatattt ccccgcagag gaatattaat gagccgactg gtcatcttcg gaccgggcta
     1201 caccggtgcg cgtattgccg cggccgtcga gcgcctagac tggcgcgtcg tgcggatcgg
     1261 gcgcgagcag ctggatcggg cccagcccga gatagccgct gcaacgcaca tcctctcgac
     1321 ggtgccgccc ggcgaggagg gcgacccggt gctggcccgc tatcatgacg cgatccgccg
     1381 cagcggcgcc tggctcggct atctctcctc caccggcgtc tatggagaca ccggcggcgc
     1441 ctgggtggat gagagcgcat ctgtcggcct cggacggcgg agcgctcgcg ctgccgccga
     1501 cctcgcctgg ctcgatctcg gcgcgcgcgc gttccgcctc cccggcatct acggccccgg
     1561 ccgctcgccg ctcgagcgta tcgcggaggg cgccgcctat cgcatcgacc ggccgggcca
     1621 agtgttcagc cgggtccata tcgatgacat cgtcgcggcc gtcctcgccg gcttcgcagg
     1681 ccccccgggc gcctacaaca tcgccgacga cctgccggca cctcagcacg aagtcacggc
     1741 ctacgccgcc cgcctgctcg gcgcgccctt gccgccgctc cgcgcgcccg acgagctccc
     1801 gcccagcgcg cgcgcattct atctggagaa tcgccgcatt gcgaaccgca aggccaagcg
     1861 gctgctcgac tggcggccta cctaccgaac ctatcgcgag ggcctgcgcg cactcagcgc
     1921 cacgatcagc cccgcgagcg tcagcagccc gcccagcacc gccgcgaacg accagcgata
     1981 gccttcgaac acggtcgaaa gcgccatcgc gatgatcggg atcagcacac tcgaataggc
     2041 ggcgcgcgcc gcaccgatct cgcggatgat ccggtaatag agcatgaaag ccagcgccga
     2101 agcgaccagc cccagataca gcactcccgc caggtaagag ggtcgcggat cgaagaccgg
     2161 cgaacccgtc accgtccagg cgatcgcggc attgctcagc gtgccgactg ccatgctcca
     2221 ggcgatcagc gcagcgaccg gaatgccccg cgctcgctcg gtcgcttgcg cgatattggc
     2281 ggcagaggcc gcgaccacgg cgagcaacgt cagccccacg ccgctgaaca ccgcgccatt
     2341 atcggcgccg tccagcctca tttcgtgcgc gaagagcatt ccgattccga ccagcgcgac
     2401 ggcggagccg gcgagaaacg gccgcgacag gcgctgcttc aagaacagcc gcgccaggat
     2461 cgcattgggc accaccagca atgcgaagac gaccgcgacc agccccgagg tcacataggc
     2521 ctctgcgcga tagacgagat tgaagttcgc gacgaactgg gcgaaggcga tcagcaggat
     2581 caccggccat acttggcgcc cgaccctcag cggcgtgcgc gtcacggccg catagacgaa
     2641 catcgccgca ctcgccgtcg cgaagcgata agtcaccgac cagctcggcg gcacgacgcc
     2701 cagctggtcg cggatcacca gccaggtcga tccccagatc agggtgatga tgatgaacgg
     2761 gataagcaca tgcgcccgca cccgcccagc tagtggcggt tcgttcacag cgccgcgatt
     2821 gcctcggcga gcggccggat cgcgtcctcg ctctgctccc agctcaccac gagccgcgct
     2881 tcgccgacgc cccaatcata aaagtcgaag ccgagcgcgc gcagccgcgc cgcctcgtcc
     2941 gcgctgacct gcaggaatac ctcattggcc tggaccggat ggacgagccg cgcgcccgcc
     3001 gcctgcgcca gcagtgccgc gccccggttc gccgcccgcg cattgtcgag ccacagcccg
     3061 tcttccagca tcgccagcag ttgcgcggcc aggtagcgcc ccttggagaa gagatgtccc
     3121 gcgcgcttgc ggcgatacag cgtcgcctcg gccaattcgg ggcggaagaa gatgagcgcc
     3181 tccgcgcaga gcccgccatt cttgacgaac ccgaagctca gcgcgtcgac cccgcctcgc
     3241 caggtcaggt ccgccggggt gcagccgaga tgcgcgaccg cgttggcaaa gcgcgccccg
     3301 tccatgtgga agccgagccc gcgccgcttc gccgtctcgc ccagcgccgc cacctcgtcc
     3361 ggcgtatagg ca
//
LOCUS       DASQVK010000435         4823 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_471141,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000435 DASQVK010000000
VERSION     DASQVK010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4823
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_471141"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1068
                     /locus_tag="VE567_09405"
     CDS             <1..1068
                     /locus_tag="VE567_09405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HYZ49095.1"
                     /translation="KISGTSKQERLAAAPVVAGGRVFVIDTAARVRAFDAQTGRQVWE
                     SFAGDASNSARGKGEKRNRKSLFGGGVSVEGDRLFATNGLGDVVAMNTADGAVIWRKR
                     PGGPLRGAPALSSGNVYVVSQDNQLFALRQSDGNVEWTESGTLEVSGVFGVAAPAAAQ
                     GTVVAGFSSGELNAYRYENGRVVWQDALSRTSISTTVGTLSDIDAAPIIDQGRVYAIG
                     SGGRMVALELVTGQRIWEINAGGIATPAIVGEWVFAVTDDARLLCIARSNGRVRWVTQ
                     LPRWQKAKSKKGPISWNGPVVAGGRVIAVSSRGEIAYVSPADGAVQATVKSGAPISLA
                     PVVANSTLYLLDDKGRLTAWR"
     gene            complement(1065..2351)
                     /gene="hisD"
                     /locus_tag="VE567_09410"
     CDS             complement(1065..2351)
                     /gene="hisD"
                     /locus_tag="VE567_09410"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HYZ49096.1"
                     /translation="MIRLSASDPDFSARFDALVNARREADADVSRDVAAILARVRSEG
                     DAALADYTSRFDRHDLDVSGWRIDPADCARALDALDPALRQALELAADRITAYHEQQR
                     PADRDDVDAVGVRLGARWRPVEAAGLYVPGGRAAYPSSLLMNAIPAKVAGVTRLAMVT
                     PTPDGAVNPLVLAAAALVGIDEIWRVGGAQAIAALAYGTRNILPVDVIVGPGNAWVAE
                     AKRQLYGVVGIDMVAGPSEILVVADAANDPDWIAADLLSQAEHDPTSQSILFTDDSRF
                     ADAVAAAVERQLGKLATAQTARASWDANGAIILVARLLDAAPLIDRLAPEHLEIAVAD
                     PEPLFRAVRHAGSIFLGRHTPEAIGDYLGGPNHVLPTGRRARFASGLSVLDFMKRTSF
                     LGCTPAALETLGPAAVALAEAEGLPAHARSVALRLS"
     gene            complement(2348..3037)
                     /gene="hisG"
                     /locus_tag="VE567_09415"
     CDS             complement(2348..3037)
                     /gene="hisG"
                     /locus_tag="VE567_09415"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010215436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HYZ49097.1"
                     /translation="MADPVIIAVPKGRILEEALPLLARAGIEPEPAFSDESSRALRFA
                     TNRSDISLIRVRAFDVATFVAHGAAQLGIVGSDVLQEFDYSELYAPVDLGIGRCRISV
                     AEPAELAASDDPREWSHVRVATKYPALTRRHFEARGVQAECVKLNGAMELAPLLGLSS
                     RIVDLVSSGRTLKENGLVEVEVIAEVSARLIANRAAFKMRSAQIAPLIEAFRQAVLPS
                     RLGEESRMGQE"
     gene            complement(3085..3318)
                     /locus_tag="VE567_09420"
     CDS             complement(3085..3318)
                     /locus_tag="VE567_09420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49098.1"
                     /translation="MGPFLYVMAIMGCGDGGYQCAEARLLQTRYTSLAACQQAAQSEL
                     IRNSDLEFPELLASCRSLTNQIVMADTPKAITH"
     gene            3417..>4823
                     /locus_tag="VE567_09425"
     CDS             3417..>4823
                     /locus_tag="VE567_09425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009823185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HYZ49099.1"
                     /translation="MTGGTRDETLSWGVFRRFLPYLWPEHEPAIRRRVVWSLALVLIA
                     KATTLMMPFAYKAAIDRMAPGLQGGASIAVALVVSYAAARFGGVFFDNVRNTVFERVG
                     QDATQRLATHVFRHLHELSLRFHLERRTGAVTKVIERGTKSIDVMLYFLLFNIAPTII
                     ELAAVTVIFWTKFGFGMVAATGLMVVTYVIFTRQVTDWRNKLRERMNELDTGAVARAV
                     DSLLNYETVKYFNAEEREATRYEKAARAYADAAVSSENSLAWLNIGQSLITNLMMAGA
                     MGFTVWGWSVGRFTPGDVVLVNTLLAQLFRPLDMLGMVYRTVRQGLIDMAAMFELVDQ
                     KAEVVDLPSAPPLIVSEGRVKFDNVRFGYEPDRQILKGVSFLVPGGKTLAIVGPSGAG
                     KSTIARLLFRFYDVTGGSISIDGQDIGRVQQRTLRANIGIVPQDTVLFNDTIGYNIGY
                     GRGGSSQPEIEGAARGAAI"
BASE COUNT          770 a         1567 c         1720 g          766 t
ORIGIN      
        1 aaaatctccg gcaccagcaa gcaggaacgg ctggcggcgg ctccggtcgt ggccgggggc
       61 cgcgttttcg ttatcgacac cgccgcgcgc gttcgtgcct tcgatgcaca gacgggccgg
      121 caggtctggg aatccttcgc cggcgacgcg tccaattcgg ctcgcggcaa gggtgagaag
      181 cgcaatcgca agtcgctgtt cggcgggggc gttagcgtcg aaggcgatcg gctgttcgcg
      241 accaacgggc tcggcgacgt cgtggcgatg aacacggccg atggcgcggt catctggcgc
      301 aagcgcccgg gcggtccgtt gcgcggcgcg ccggcgctgt cgagcggcaa cgtctatgtg
      361 gtcagccagg acaaccaatt gttcgcgctc cgccagagcg acggcaacgt cgaatggacc
      421 gagtcgggca cgctggaagt gtccggcgtg ttcggggtcg cggcgccagc cgcggcgcag
      481 ggaacggtgg tcgccggctt ctcgtccggc gagctcaacg cctatcgtta tgaaaacggc
      541 cgggtcgtct ggcaggacgc gctgtcgcgg acgagcattt cgacgacggt cgggacgctg
      601 tccgacatcg acgccgctcc gatcatcgat cagggccgcg tctatgcgat cggctcgggc
      661 ggacgcatgg tcgcgctgga actcgtgacc gggcagcgca tctgggaaat caacgccggc
      721 ggcatcgcca cgccggcgat cgtcggcgaa tgggtgttcg ccgtcacgga cgatgcgcgg
      781 ctgctctgca tcgcgcgctc gaacggccgg gtgcgctggg tgacgcaact gccgcgctgg
      841 cagaaggcaa agagcaagaa gggcccgatc agctggaatg gcccggtcgt ggccggcggc
      901 cgggtgatcg cggtcagcag ccgaggcgag atcgcctatg tctcgcccgc cgacggcgcg
      961 gtccaggcga ccgtcaagtc cggcgccccg atcagcctgg cgccggtcgt cgcgaacagc
     1021 acgctgtatc tgctcgacga caagggccgg ctgaccgcct ggcgctaaga aaggcggagc
     1081 gcgaccgagc gtgcgtgggc cggcaggcct tcggcctcgg cgagtgcgac ggcggcgggg
     1141 ccgagcgtct ccagcgccgc cggcgtgcag cccaggaagc tggtgcgctt catgaaatcg
     1201 agcacgctca gccccgaggc gaagcgggcg cgccgcccgg tcgggagcac gtggttgggg
     1261 ccgcccagat agtcgccgat cgcctcgggc gtgtggcggc cgagaaagat cgagccggca
     1321 tggcgcacgg cgcggaacaa gggctccgga tcggcgacgg cgatttcgag atgctcgggc
     1381 gccagccggt cgatcagcgg ggcggcgtcg agcaggcgag cgacgaggat gatcgcgccg
     1441 ttcgcgtccc agctcgcccg cgcagtctgg gcggtcgcga gcttgccaag ttggcgctcc
     1501 accgcagcgg cgaccgcatc tgcgaacctt gagtcgtcgg tgaacaggat cgattgactg
     1561 gtcgggtcat gctcggcctg actcagcagg tcggcggcga tccagtcggg atcgttggcg
     1621 gcatcggcga cgacgaggat ttcggacggg cccgcgacca tgtcgatccc gaccacgccg
     1681 taaagctggc gcttggcctc ggcgacccag gcattgccgg ggccgacgat cacgtcgacc
     1741 gggaggatgt tccgagtgcc ataagcgagc gcagcgatcg cctgcgcgcc gcccacgcgc
     1801 cagatctcgt cgatgccgac cagtgccgcg gcggcgagca ccagcgggtt gaccgcgcca
     1861 tcgggcgtcg gcgtcaccat cgccagccgc gtgacgcctg cgaccttggc gggaatggcg
     1921 ttcatcagca gcgagcttgg ataggcggcg cggccgccgg gaacgtagag gcccgccgcc
     1981 tcgaccggcc gccaccgagc gcccaggcgg acgcccaccg catccacgtc gtcgcgatcc
     2041 gcggggcgtt gttgttcgtg ataggcggtg atgcgatcgg ccgcgagctc gagtgcctgg
     2101 cgcagcgccg ggtccagcgc gtccagcgcg cgcgcgcagt ccgcggggtc gatccgccag
     2161 ccgctgacat cgagatcgtg acggtcgaag cggctggtgt aatcggcgag cgccgcatcg
     2221 ccttcgctgc gcacgcgcgc gaggatggcg gcgacgtcgc gtgacacgtc tgcatcggcc
     2281 tcgcgccgcg cgttcaccag cgcgtcgaag cgggcggaga aatcggggtc cgaggcggag
     2341 aggcgaatca ctcctggccc atccttgatt cttcccccag gcgggaaggg agaacggcct
     2401 gccgaaacgc ttcgatcagc ggggcgatct gggcgctgcg catcttgaag gcggcgcggt
     2461 tggcgatcag gcgcgcgctc acctcggcaa tcacttccac ttcgaccagt ccgttttcct
     2521 tgagggtgcg gccggaggag accaggtcga cgatccggct cgacaggccg agcagaggcg
     2581 cgagttccat tgcgccgttc agcttgacgc attcggcctg cacgccgcgc gcctcgaaat
     2641 ggcggcgggt gagcgcggga tatttggtcg cgacgcggac atggctccac tcgcgcggat
     2701 cgtccgaggc ggcgagctcg gccggctcgg cgaccgagat ccggcaacgg ccgatgccga
     2761 gatcgaccgg ggcgtagagc tccgaatagt cgaactcctg cagcacgtcc gagccgacga
     2821 tgccgagctg cgccgcgcca tgggcgacga aggtcgcgac gtcgaacgcg cgcacgcgga
     2881 tcagcgaaat gtcgctccgg ttggtggcga agcgcagcgc gcggctgctc tcgtccgaga
     2941 aggccggctc aggctcgatc ccggcgcgcg cgagcagcgg cagcgcttct tcaagaatgc
     3001 gccccttggg caccgcgatg atgacaggat cggccatggc cgggcggctt taggcccgtg
     3061 ccttcgcacc tgcaataatg gccgtcagtg tgtgatcgcc ttgggcgtat ccgccatcac
     3121 gatctggttg gtgagcgagc ggcagctggc gagcagctca gggaattcca ggtcgctgtt
     3181 gcggatcagc tccgactgcg ccgcctgctg gcaggccgcc agcgaggtgt agcgggtctg
     3241 gagaagccgc gcttcggcgc attgatagcc cccgtcgccg cagcccatga ttgccatcac
     3301 ataaaggaaa ggacccatcg ccgcttacct ccgggcggac tcaacccgct aacctgcctg
     3361 aggttgcatt ggtttcgccg ctggtcattc ctacatcgac caggatgtcg aaaactgtga
     3421 ccgggggcac tcgggacgaa accctgagct ggggcgtctt ccgccgtttc ctcccctatc
     3481 tctggccgga gcatgagccg gcgatccgcc gccgcgtcgt ctggtcgctg gcgctggtgc
     3541 tgatcgccaa ggcgaccacg ctgatgatgc ccttcgccta caaggcggcg atcgaccgga
     3601 tggcgccggg gctgcagggg ggcgcctcga tcgcggtcgc tctggtcgtc tcctatgccg
     3661 cggcgcggtt cggcggcgtg ttcttcgaca atgtccgcaa caccgtgttc gagcgggtgg
     3721 gccaggacgc gactcagcga ctggccaccc acgtgttccg ccacctgcac gagctgtcgc
     3781 tgcgcttcca tctggagcgc cgcacgggcg ccgtcaccaa ggtgatcgag cgggggacca
     3841 agagcatcga cgtgatgctc tatttcctcc tcttcaacat cgcgccgacg atcatcgagc
     3901 tggcggcggt gaccgtcatc ttctggacca aatttggctt cgggatggtc gcggcgacgg
     3961 gcctgatggt cgtcacctat gtgatcttca cgcggcaagt gaccgactgg cgcaacaagc
     4021 tgcgcgagcg gatgaacgag ctggacacgg gcgccgtcgc ccgcgcggtc gattcgctgc
     4081 tgaactacga gacggtcaaa tatttcaacg ccgaggagcg ggaggccacg cgctacgaaa
     4141 aggcggcgcg cgcctatgcc gatgcggcgg tcagctccga gaattcgctc gcctggctca
     4201 atatcggcca gtcgctgatc accaacctga tgatggcagg cgcaatgggc ttcaccgtct
     4261 ggggctggag cgtggggcgc ttcacgccgg gcgatgtggt gctggtcaat acgctgctcg
     4321 cccagctttt ccgcccgctc gacatgctcg gcatggtcta tcgcaccgtc cgccagggcc
     4381 tgatcgacat ggccgcgatg ttcgagctgg tcgaccagaa ggcggaagtc gtcgatttgc
     4441 ccagcgctcc gccgctgatc gtcagcgaag gccgggtgaa attcgacaat gtccgcttcg
     4501 gctatgagcc cgaccggcag atcctcaaag gcgtgagctt cctcgtgccc ggcggcaaga
     4561 cgctggcgat cgtcggtcct tccggcgcgg gcaagtcgac catcgcccgg ctgctgttcc
     4621 gcttctatga cgtgacgggc ggcagcatct cgatcgacgg gcaggatatc ggccgggtcc
     4681 agcagcggac gctgcgcgcg aacatcggca tcgtgccgca ggacacggtg ctgttcaacg
     4741 acaccatcgg gtacaacatc ggttacgggc gagggggctc cagccagccg gagatcgagg
     4801 gcgccgcccg cggggctgcg atc
//
LOCUS       DASQVK010000436         2471 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_62192, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000436 DASQVK010000000
VERSION     DASQVK010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2471)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2471)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2471
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62192"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..459)
                     /locus_tag="VE567_09430"
     CDS             complement(<1..459)
                     /locus_tag="VE567_09430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49100.1"
                     /translation="MTAPLHVLIERLAHERGADLPPDWSGQPIDPAALGGEEALTALA
                     ENAGWEQPQRLTGRPRANRFPLLAWTPDQGWLLAEQIEAHGRLRVWDGTARSIEFGPD
                     VTLYDISLPEAAVARTHASAFDVFWRAMLARKDALVAATVATIVANIITLA"
     gene            complement(456..1778)
                     /locus_tag="VE567_09435"
     CDS             complement(456..1778)
                     /locus_tag="VE567_09435"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HYZ49101.1"
                     /translation="MNSCCSNFGRIAALALAGASAVAGAQTYGPAAPEKPLTAAEIGA
                     VPPGIDAELAAAASRAVDANPAMRASRLNNRAAATDIRSAKWLYGPSVSVTGYAFEGG
                     SSVVRGNNVTANLTVDQPIWQGGRIGASIERARAAERQSVAVTDETAQDIALRVTNTY
                     FNLVSANARIQALEQGLTEHRTLVQSIERRVEQEVSPRVDLELARSRTNQLIEQETSA
                     KALAASSLEQLRVLLNDPSYTPVAAPRYDPAVHHPGQAGAIESATRCSPTRKRLQAEA
                     LVARADQKLARAQYLPRVSAQFNTNEVTGNRIGVAVSAGTNGGLSQFEAEHSARLRRQ
                     AAEVQVGSADISLQTDLAADFAENSNARERIASGRAAADSARAVTDSFQRQFVVGRRS
                     WIDVMNAALEVTQADVAVRDAEVSAMSSAARIQLRTCRWQPEPPVSRP"
     gene            complement(1941..>2471)
                     /locus_tag="VE567_09440"
     CDS             complement(1941..>2471)
                     /locus_tag="VE567_09440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49102.1"
                     /translation="SIYASYELPAKIFRPILDALSDGPQTLRALEALPALSDQPASAR
                     TQAVLLLTSAGIVSLLRDRRRPVQAAQRLNRAIAEAAFRGANYKHLAAPAAGSPINVQ
                     TFQLVALHIVLENEQDARERAPVALADRLRLLGKGLEQNGQEVTGEAAERAAADVIDL
                     MTTQYLPEWRKLGAIE"
BASE COUNT          385 a          821 c          826 g          439 t
ORIGIN      
        1 ggcgagcgtg atgatgttcg caacgatcgt ggcgacggtc gccgccacca gtgcgtcctt
       61 gcgcgccagc atcgcccgcc agaacacgtc gaaggcggac gcatgggtcc gcgccaccgc
      121 cgcttcgggc aggctgatgt cgtaaagcgt gacgtcgggc ccgaattcga tcgagcgcgc
      181 cgttccgtcc cacacccgca gccggccatg cgcctcgatc tgttcggcca gcagccagcc
      241 ctgatcgggc gtccaggcga ggagcgggaa gcgattggcg cgcgggcggc ccgtcaagcg
      301 ctggggctgc tcccacccgg cattttcggc aagcgccgtc agggcctctt cgccgcccag
      361 cgcggcggga tcgatcggct ggcccgacca gtcgggcggc agatcggcgc cgcgctcgtg
      421 cgcaaggcgc tcgataagga catggagcgg tgcggtcatg ggcgactcac tggaggttcg
      481 ggctgccagc ggcaggtgcg gagctggatg cgggcggcag atgacatggc gctgacctcg
      541 gcatccctga cggcgacgtc cgcctgggtg acttcaagcg cagcgttcat cacatcgatc
      601 cagctgcgcc ggccgacgac gaactggcgc tggaaggaat cggtgacggc gcgcgccgaa
      661 tcggcggcgg cgcggccgct ggcgattcgc tcccgcgcat tgctgttctc ggcgaaatcg
      721 gcggcgagat cggtctggag cgaaatatcg gcggacccga cctgcacttc ggccgcctga
      781 cggcgcaatc gcgcgctgtg ctcggcctcg aactgcgaca ggccgccatt ggtgcccgca
      841 ctgaccgcga caccaatcct gttgcccgta acttcgttcg tgttgaactg tgccgagacg
      901 cgcggaagat attgcgcgcg ggccagcttc tggtctgccc gcgcgaccag cgcttcggcc
      961 tgcagccgtt tgcgcgtggg cgagcagcgg gtggcggact cgatggcccc cgcttggccg
     1021 gggtgatgca cggccgggtc atatcgcggc gcggccacgg gtgtgtagct ggggtcgttc
     1081 agcagcacgc ggagctgctc caggctggag gcggcaagcg cctttgcgct ggtttcctgc
     1141 tcgatcagct ggttggtacg cgagcgcgca agctccagat ccactcgcgg gctgacttcc
     1201 tgctccaccc gccgctcgat cgactggacc agcgtgcggt gctcagtcag cccctgctcg
     1261 agcgcctgga tgcgcgcatt ggcgctcacc aggttgaagt aggtgttggt cacgcgcagc
     1321 gcgatatcct gcgcggtctc gtcggtgacc gccaccgatt gacgctccgc cgccctggcg
     1381 cgctcgatcg aggcgccgat tcgtccgccc tgccagatcg gctgatccac ggtcaggttg
     1441 gcagtcacat tgttgccgcg caccacgctg ctgccgcctt cgaaggcata gccggtcacc
     1501 gacacgctgg ggccgtagag ccatttcgcg gagcggatgt cggtcgccgc ggcgcggttg
     1561 ttgagacgcg aggcccgcat cgccggattg gcatcgaccg cacgcgaagc agccgccgca
     1621 agttcagcgt cgatacctgg tggtactgcg ccgatctccg ctgcggtcag aggcttctct
     1681 ggcgctgctg gaccataagt ttgcgccccg gcaacagccg acgcgccggc cagggccagc
     1741 gcggcaatcc ttccaaaatt tgagcagcag gaattcatgc gtgcattccg ctaggggagt
     1801 tcggcgcgcg attccagtgt tcttagtcca ccacgccgag ctttttgcca agccggacac
     1861 cggtttacga acagatcatt taccaaatcg tttgcgaggt tctgcgtttc tcgtgatgac
     1921 gccgcacgcc ttccgcaagc tcattcgatc gcgccgagct tgcgccattc cggaagatat
     1981 tgcgtggtca taaggtcgat cacgtcggcc gcggcccgct ccgccgcctc gcccgtcacc
     2041 tcctggccgt tttgctccag gccttttcca agcaagcgta gtcgatcagc cagcgccacc
     2101 ggcgctctct cccgtgcatc ctgttcgttc tccagcacga tatgcagggc taccagctgg
     2161 aaagtttgaa cgttgatcgg gctaccggcg gccggcgctg ccagatgctt atagttggcg
     2221 ccgcggaacg ccgcctcggc gatcgcccgg ttcagccgct gcgccgcctg gacgggacgc
     2281 cggcgatccc ggagtagcga gacgatgccc gcagacgtca acagcagcac cgcttgggta
     2341 cgtgccgatg cgggctgatc ggaaagagcc ggaagcgctt caagggcccg caaggtttgc
     2401 ggcccatcgc tcaaggcgtc gagaatcggc cgaaagattt tcgctggcag ctcatagctc
     2461 gcatagatcg a
//
LOCUS       DASQVK010000437         4415 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_93062, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000437 DASQVK010000000
VERSION     DASQVK010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4415
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93062"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1054)
                     /gene="lpdA"
                     /locus_tag="VE567_09445"
     CDS             complement(<1..1054)
                     /gene="lpdA"
                     /locus_tag="VE567_09445"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017182224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA];
                     GO_process: GO:0051068 - dihydrolipoamide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HYZ49103.1"
                     /translation="MPDTYDLIVLGSGPGGYVAAIRGAQLGLKTAIVERELLGGICLN
                     WGCIPTKALLRSAEIFHYMQHAKDYGLVADKISADLDAVVKRSRGVAKQLNQGVTHLM
                     KKNKIAVHMGTGVLTGKGGMAVTAADGKTTELSAKNIIVATGARARDLPFAKADGKRV
                     WTYRHAMTPPEMPSKLLVIGSGAIGIEFASFYRDMGAEVTVVEMLDRVVPVEDADVSA
                     FLDKQLKKQGMTIMTSAGVEKLEAGANGVKASIKGKDGKIIEDQFSHVIVAIGIVPNT
                     ENIGLEALGVKTERGHIVTDGMCRTNVEGIWAIGDVTAPPWLAHKASHEGVIAAEAIA
                     GKHPHAMDPKNIPGCTY"
     gene            complement(1150..2463)
                     /locus_tag="VE567_09450"
     CDS             complement(1150..2463)
                     /locus_tag="VE567_09450"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010336021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045254 - pyruvate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0004738 - pyruvate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0004742 - dihydrolipoyllysine-residue
                     acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex dihydrolipoamide
                     acetyltransferase"
                     /protein_id="HYZ49104.1"
                     /translation="MPIELKMPALSPTMEEGTLAKWLVKEGDDVRSGDILAEIETDKA
                     TMEFEAVDEGKIAKILVPEGADGVKVGTVIALIAGEGEEASAAAASAPAPKAEAAPAP
                     APAPAPAPGPLPAPPSSPAPAPVQAPHGSGDRLKASPLARRLAEAKGIDLGLVQGSGP
                     GGRIVKADIETAQPGAAPQPVAAAAPAPAAPAPAAAPAQAPAAPFATDIPHEAIKLSN
                     MRKTIARRLTEAKSTIPHIYLTVDIRLDALLKLRAELNSALTGRGVKLSVNDMLIKAL
                     AVGLKQVPECNVSFTPNELIKYSRADISVAVSIPGGLITPIIVGAESKGVAAISSEMH
                     ELASRAKEGKLQPHEYQGGTASISNMGMFGIKQFEAVINPPQGMIMAIGAGEKRPYVI
                     DDALQIATVMSATGSFDHRAIDGADGARLMQAFKGLVEAPLGLVA"
     gene            2584..3039
                     /locus_tag="VE567_09455"
     CDS             2584..3039
                     /locus_tag="VE567_09455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HYZ49105.1"
                     /translation="MRTYLAVIDETGEAEIALRFAARRAAKTGGTVLALALIEPAEFI
                     QWGGVQATIEEEARQRAEALVASASGTLFDEAGIRPSILVRQGDPVQVIRQVLAENDS
                     IAALVLGAAASGAPGPLVAHFAGSDAGKLPCPLMIVPGSLDSEAIDRLS"
     gene            complement(3036..3530)
                     /locus_tag="VE567_09460"
     CDS             complement(3036..3530)
                     /locus_tag="VE567_09460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0033745 - L-methionine-(R)-S-oxide
                     reductase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HYZ49106.1"
                     /translation="MRFPVYHFDVSTGSKTDLYNDLLSALDALTADEPDPIANMANAA
                     ALLFEYLPDLNWAGFYRLIGDELVLGPFQGKTACIRIALGSGVCGTAAATRETQLVED
                     VHAFPGHIACDAASASELVVPIVSQGRLIGVLDLDSPARARFDAGDAAGCEMLARLLA
                     PRIA"
     gene            complement(3619..4032)
                     /gene="arfB"
                     /locus_tag="VE567_09465"
     CDS             complement(3619..4032)
                     /gene="arfB"
                     /locus_tag="VE567_09465"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010163153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome rescue aminoacyl-tRNA
                     hydrolase ArfB"
                     /protein_id="HYZ49107.1"
                     /translation="MAKVEWPPLPEEALDERFLAATGPGGQNVNKVATAVQLRLDVFA
                     LGLRPDVYARLKQLAGSRWTKEGEIVVTARAHRTQEANRQEARERLAELVGRAHIAPA
                     KRKATKPSKAAKARRVDAKKGRSAVKAGRGKVRLD"
     gene            complement(4025..>4415)
                     /locus_tag="VE567_09470"
     CDS             complement(4025..>4415)
                     /locus_tag="VE567_09470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010339964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RNA pseudouridine synthase"
                     /protein_id="HYZ49108.1"
                     /translation="KTYLAVLEGVPDAEEGVIELGLSKISTATSGWRIIPAKKGKPAV
                     TRWTRLDVKGGRTLVRFEPETGRTHQLRVHAASGLGMPIVGDPTYGTGGAAMLLHASR
                     IIVPRHNKPAIDVEAPLPERFGAFAHG"
BASE COUNT          660 a         1564 c         1397 g          794 t
ORIGIN      
        1 aataggtgca gccggggatg ttcttcgggt ccatcgcgtg cggatgcttg ccggcgatag
       61 cctcggctgc gatcacgcct tcatggctcg ccttgtgcgc cagccagggc ggcgccgtca
      121 cgtcgccgat cgcccaaatg ccctcgacat tcgtgcggca catgccgtcg gtgacgatgt
      181 gcccgcgctc ggtcttcacg cccagcgctt ccaggccgat attttcggtg ttcggcacga
      241 tcccgatcgc cacgattaca tggctgaact ggtcctcgat aatcttcccg tccttgccct
      301 tgatcgaggc cttcacgccg ttggccccgg cctcgagctt ctcgaccccg gccgaggtca
      361 tgatcgtcat gccctgcttc ttgagctgct tgtcaaggaa agccgagaca tcggcgtcct
      421 ctaccggcac gacccggtcg agcatttcga ccaccgtcac ttcggcaccc atgtcgcggt
      481 agaagctcgc aaactcgatc ccgatcgcgc ccgagccgat gaccagcagc ttcgacggca
      541 tttcaggcgg cgtcatcgcg tggcgatagg tccagacgcg cttgccatcg gccttggcga
      601 acggcaggtc gcgcgcccgc gcgccagtcg cgacgatgat gttcttcgcc gatagctcgg
      661 tcgtcttccc gtccgccgcc gtgacagcca tcccgccttt gccggtcagc acgccggtgc
      721 ccatatggac cgcgatcttg ttcttcttca tcaggtgcgt gacgccctga ttgagctgct
      781 tcgcaacccc gcgcgaccgc ttcaccacgg catccaggtc ggcactgatc ttgtccgcga
      841 ccagtccgta atccttggcg tgctgcatat agtggaagat ctcggccgat cgcagcagcg
      901 ccttggtcgg gatgcacccc cagttcaggc aaatgccgcc caagagttcc cgctccacga
      961 tcgcggtctt gaggcccagc tgagcgccgc ggattgccgc gacgtacccg ccggggccgg
     1021 agccgaggac aatgaggtcg taggtgtcag gcatatgcac tccgtaaagg acggcagctc
     1081 acttaccctc tccccttgag gagcgagagg gaggggcccg ccgcgaagcg gtggggggag
     1141 aggggttgct caagcgacca gccccagcgg cgcttccacc agccccttga acgcctgcat
     1201 cagccgcgcg ccgtccgcgc cgtcgatggc gcggtggtcg aagctgcccg tcgcgctcat
     1261 cacggtcgcg atctggagcg cgtcgtcgat cacgtaaggc cgcttctcgc ccgcgccgat
     1321 cgccatgatc atgccctggg gcgggttgat gaccgcttcg aactgcttga tgccgaacat
     1381 gcccatgttg gaaatgctgg cggtgccgcc ctgatattcg tgcggctgga gcttcccttc
     1441 cttcgcgcgg ctcgcgagct cgtgcatctc gctcgagatg gcggcgacgc ccttgctctc
     1501 cgcgccgacg atgatcggcg tgatgagtcc gcccggaatc gacaccgcaa ccgaaatgtc
     1561 ggcgcgacta tatttgatca gctcattcgg cgtgaaactg acattgcact cgggcacttg
     1621 cttcaatcca accgccagcg ccttgatcag catgtcgttg accgacagct tcacgccccg
     1681 cccggtgagt gccgagttca gctcggcccg cagcttcagg agcgcgtcga ggcggatatc
     1741 gacggtcaga tagatgtgcg ggatcgtcga cttggcttcg gtgaggcggc gcgcgatcgt
     1801 cttgcgcatg ttggaaagct tgatcgcttc gtgcggaata tcggtcgcga acggcgcggc
     1861 tggagcctgg gcgggcgcgg ccgccggagc cggggcagca ggcgccggag cggccgccgc
     1921 gaccggctgc ggggctgcac ccggttgcgc cgtttcgata tccgccttca cgatccgccc
     1981 gccggggccg gagccctgga ccaggcccag gtcgatcccc tttgcctcgg ccaaccggcg
     2041 cgccagaggc gacgccttca agcgatcgcc gctcccatgc ggcgcctgga caggcgcggg
     2101 cgccgggctg gaaggcgggg ctggcaaagg gcccggtgcc ggtgccggtg ccggtgccgg
     2161 cgctggcgcc gcctcggctt taggtgccgg cgcggaagcc gcagccgcgc tcgcctcctc
     2221 gccttcgccc gcaatcagcg cgatcaccgt gccgaccttc actccgtccg caccctcggg
     2281 caccaggatc ttcgcaatct tgccttcgtc gaccgcttcg aattccatcg tggccttgtc
     2341 ggtctcgatc tcggcgagga tatcgccgga gcggacatca tccccttctt tcaccagcca
     2401 tttggcgagc gtgccttcct ccattgtcgg cgagagggcc ggcatcttga gctcgatcgg
     2461 catgggggct cctgggttcc gtagcgattt gcggcccccc ttcggccaag cctcccggcc
     2521 ggtcaagata ttgcgcttac gcctcgcttg cgtcacctat cgccgcaaca gggggccgaa
     2581 ccgatgcgca cctatctcgc agtgatcgac gaaaccggcg aagcggaaat cgccctgcgc
     2641 ttcgccgcgc gccgcgcagc caagaccggc ggcaccgtgc tcgcgctggc gctgatcgag
     2701 ccggccgagt tcattcaatg gggcggcgtc caggcgacga tcgaggagga agcccgccag
     2761 cgcgccgagg ccttggtcgc cagcgcctcg ggcaccttgt tcgacgaggc gggcatccgc
     2821 ccgtcgattc tcgtccgcca gggcgatccg gtccaggtga tccgccaggt gctggccgaa
     2881 aacgacagca ttgccgctct ggtgctgggg gccgccgcca gcggcgcgcc gggaccgctc
     2941 gtcgcgcatt tcgctggcag cgacgccggc aagctcccct gcccgctgat gatcgtcccc
     3001 ggcagcctcg actccgaagc gatcgaccgg ctgagctagg cgatccgtgg cgccagcagg
     3061 cgggccagca tttcgcaccc ggccgcatcg cccgcatcga atcgcgcgcg ggccgggctg
     3121 tcgaggtcga gcacgccgat caggcggccc tggctgacga tcggcaccac cagctccgaa
     3181 gcggaagccg catcgcacgc gatgtgtccc ggaaaggcgt gcacatcctc gacgagctgc
     3241 gtctcgcgag tcgccgcggc ggttccgcac acaccgctgc ccagcgctat gcggatgcac
     3301 gccgtcttgc cctggaaggg cccgaggacc agttcgtccc cgatcagccg gtagaagccg
     3361 gcccagttga ggtcgggcag atattcgaac agcagcgccg ctgcgttcgc catgttggcg
     3421 atcggatcgg gttcgtccgc cgtcagcgcg tcgagagcgg aaagcaggtc gttgtaaaga
     3481 tcggtcttgg agccggtgct gacgtcgaaa tgatacactg gaaacctcat cgtcatgccg
     3541 gatttgatcc ggcatccgcc ttcttgcctg ccgagatgaa gacacccgaa ccatggatca
     3601 agtccgggcg acaaggatct aatccagccg caccttgccg cgtcccgcct tcactgcgct
     3661 ccgccccttc ttcgcatcga cgcgccgcgc tttcgcggcc ttgctcggct tggtcgcctt
     3721 ccgcttcgcc ggcgcgatat gcgcccgccc gaccagctcg gcgagccgct cgcgcgcttc
     3781 ctgccggttc gcttcctggg tccggtgcgc acgggcggtg acgacgatct cgccctcctt
     3841 ggtccagcgg ctgcccgcca gttgcttcag ccgcgcatag acatcgggcc gcagccccag
     3901 cgcaaacacg tcgagccgca attgcactgc agtggcgacc ttgttgacgt tctgcccgcc
     3961 cggccccgtc gcggcgagga accgctcatc cagcgcctcc tctggcagag ggggccattc
     4021 gaccttagcc atgcgcgaaa gccccgaacc gttccggcag cggcgcctcg acgtcgatgg
     4081 cgggcttgtt atgccgcggc acaatgatgc ggctggcgtg gagaagcatc gccgcgccgc
     4141 ccgttccata agtcggatcg ccgacgatcg gcatgcccag cccgctcgcc gcatgcacgc
     4201 ggagctggtg cgtccgcccg gtctcgggct cgaagcgcac cagcgtgcgg ccgcccttca
     4261 cgtccagccg cgtccagcgc gtgaccgccg gcttgccttt cttcgctgga atgatccgcc
     4321 atccgctcgt ggccgtgctg atcttggaaa gccccagctc gatcacgcct tcctccgcgt
     4381 ccggcacgcc ctccaggacc gcaagatagg tcttc
//
LOCUS       DASQVK010000438         3054 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_29058, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000438 DASQVK010000000
VERSION     DASQVK010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3054
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29058"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(150..890)
                     /gene="truA"
                     /locus_tag="VE567_09475"
     CDS             complement(150..890)
                     /gene="truA"
                     /locus_tag="VE567_09475"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013833854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HYZ49109.1"
                     /translation="MTRYAMTLEYDGRPFMGWQRQDHGPSVQEAIEAAIRKMTGESTA
                     VHAAGRTDSGVHALAMRAHVELQRKLTPFRLMEGLNALLRPDPVAVLACESVPDDWHA
                     RFSCVGRSYEYRIVNRRAPLTVEAGLAWRLPTPLDAEAMHAAAQRLVGRHDFTTFRSA
                     HCQSESPVKTLDRLDVSREGERIRIVAEARSFLHHQVRSMVGCLALVGQGKWSADDIS
                     AALAARDRAALGFNAPPDGLYFSGARYS"
     gene            complement(887..1792)
                     /gene="fmt"
                     /locus_tag="VE567_09480"
     CDS             complement(887..1792)
                     /gene="fmt"
                     /locus_tag="VE567_09480"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HYZ49110.1"
                     /translation="MRLVFMGTPDFAVPALDTLVEAGHEIAAVYSQPPRPAGRGKALQ
                     PSPIQRRAEALGLEVRTPLTLRDPDEQARFAALAADAAVVAAYGLILPKPILAAPRLG
                     CFNIHASLLPRWRGAAPIQRAILAGDEVTGITIMDMEAGLDTGPMRAKVDVLVDRKTA
                     GELTAELAAKGAVLAAEVLMDLPNYPSRPQPDQGVTYAAKIEKAEARLDFSAGAMAAE
                     RHIRAFNPTPGAFFELEGERIRILAAEVEAEAGEAGVVLDDRLLIGCGADALRPTRVQ
                     RAGRGAMNTEELLRGFPIPPGTHLA"
     gene            1847..2443
                     /gene="recR"
                     /locus_tag="VE567_09485"
     CDS             1847..2443
                     /gene="recR"
                     /locus_tag="VE567_09485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016747292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HYZ49111.1"
                     /translation="MASAEIETLTQALARLPGLGPRSARRAVLHLLKKREAALAPLLR
                     ALEAVSDKLATCGICGNVDTTNPCGICADPRRDARALCVVEDVPDLWALDRSRLFPGK
                     YHVLGGRLSALEGVRPEDLRIDTLVARVAAGGIDEVVLAMNATLEGQTTAHYIAERIE
                     RFPVRLTQLAHGLPVGGELDYLDEGTLAQALRARRPVA"
     gene            2484..3017
                     /gene="def"
                     /locus_tag="VE567_09490"
     CDS             2484..3017
                     /gene="def"
                     /locus_tag="VE567_09490"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HYZ49112.1"
                     /translation="MAILPIIETPDPRLRTISTPVETIDAELQTLIDDMFETMYVAPG
                     IGLAAIQVGVPKRLLVIDLQEEQDEEGKPIKDPRVFINPEILETSDELQVYQEGCLSI
                     PDQYADVERPAAIRARWQDREGKTHEERLEGLLAICLQHEMDHLEGILFIDHLSRLKR
                     DMLLKKLEKARRAKKAA"
BASE COUNT          488 a         1010 c         1055 g          501 t
ORIGIN      
        1 tctcgccggc gctgccttcg accggctcct tgggaaccgg acccttcggg tcgcggctgc
       61 ccacggactt ctcgtccggc gaatcgatcg tcttcttgtc ggccatgatg ctctccttgg
      121 cggggagaac gccgcggccg ccgatccgtt catgaatagc gcgcgccaga gaagtacagg
      181 ccgtctggcg gagcgttgaa gcccagcgcg gcgcggtcgc gggcggcgag agcggcggaa
      241 atatcgtccg cgctccattt gccttggcct acgagcgcga ggcagccgac catcgagcgg
      301 acctgatgat ggaggaagga gcgcgcctcg gccacaatgc ggatgcgctc gccctcgcga
      361 ctgacgtcca gccggtcgag cgtcttgacc gggctttcgg actggcaatg ggccgagcgg
      421 aaagtggtga agtcgtgccg gccgaccagg cgctgcgcgg ctgcgtgcat cgcttccgcg
      481 tcgagcgggg tcggcaggcg ccaggcgagg ccggcctcca ccgtcagcgg cgcgcggcga
      541 ttgacgatgc gatattcata ggatcggccg acgcaggaaa agcgggcatg ccagtcgtcc
      601 ggcacactct cgcaggccag cacggcgacc ggatcggggc ggagcaacgc gttcaggcct
      661 tccatcagcc gaaaaggcgt gagcttgcgc tgcagctcga catgggcgcg catcgcgagc
      721 gcgtggacgc ccgagtcggt gcggccggcg gcgtggacgg cggtgctttc gccggtcatt
      781 ttcctgatcg cggcttcgat cgcttcctgc acgctcggcc catgatcctg gcgctgccag
      841 cccatgaaag ggcgcccgtc atattcgagc gtcatagcat agcgggtcat gcgagatgcg
      901 tgccgggcgg aatggggaag ccgcgtagca actcctccgt gttcattgcg ccgcggccgg
      961 cacgctgaac ccgggtgggg cgcagcgcgt cggcgccgca gccgatcagc aggcgatcgt
     1021 ccagcaccac gcccgcttcg ccggcctcgg cttctacttc ggcggcgagg atgcggatgc
     1081 gctcgccctc caattcaaaa aaggctccgg gcgtcgggtt gaaggcgcgg atgtggcgct
     1141 cggccgccat agcgccggcg ctgaagtcga gccgggcttc cgccttctcg atcttggcag
     1201 cgtaagtaac gccctggtcc ggctgcgggc gggaagggta gttggggagg tccataagca
     1261 cttcggccgc caggaccgcg cccttcgcgg cgagctccgc ggtcagctcg ccggccgtct
     1321 tgcggtctac caagacatcg actttggccc gcatcggccc ggtgtcgagc cccgcctcca
     1381 tatccatgat cgtgatgccg gtcacttcgt cgccggccag gatcgcgcgc tgaatcggcg
     1441 ccgcgccgcg ccagcggggg agaagggacg cgtggatgtt gaagcagccg agcctgggcg
     1501 ccgcgaggat cggcttgggc aggatcaggc cataggcggc gaccaccgcg gcgtccgccg
     1561 ccaatgcggc gaagcgcgcc tgctcgtccg gatcgcgcag cgtgagcggt gtgcgcacct
     1621 ccagccccag cgcttcggcg cggcgctgta tgggcgaagg ctgcagcgcc ttgccgcgcc
     1681 cggccggtcg cggcggctgg ctatagacgg ccgcgatctc gtgcccggcc tcgaccaggg
     1741 tgtcgagcgc gggcacagcg aaatcgggcg ttcccatgaa gacaaggcgc atgcgcttct
     1801 ccaaccggct ggcgcgtgcg ggcgcaaccc cctatttgtt cccgccatgg catccgccga
     1861 gatcgaaacc ctgacgcaag cgctggcgcg actgcctggc cttggcccgc gctcggcccg
     1921 acgtgccgtg ctgcatctgc tgaaaaagcg ggaggcggcg ctggcgcctc tgctgcgcgc
     1981 gctggaggcg gtgagcgaca agctcgcgac ctgcggcatt tgcggcaatg tcgacacgac
     2041 gaacccatgc ggcatttgcg ccgatccgcg ccgcgacgcg cgcgcgctgt gcgtggttga
     2101 ggatgtgccc gatctctggg cgctggaccg ctcgcggctc tttccgggca aatatcatgt
     2161 gctcggcgga cggctctcgg cgctggaagg cgtgcgaccc gaggatctgc gcatcgacac
     2221 tctggtcgcg cgggtggccg ccggcgggat cgacgaagtc gtgctggcga tgaacgcgac
     2281 cctcgagggt cagaccaccg cgcactatat cgccgagcgc atcgagcgct ttcccgtgcg
     2341 gctcacgcag ctcgcgcacg ggctgcccgt ggggggcgaa ctcgactatc tcgatgaggg
     2401 aacgctggcc caggcgctca gggcacggcg gccggtcgcc tgagcctctt tacggaaccg
     2461 cctctcgcac ctaatttcct cgcatggcca ttctaccgat catcgaaacg cccgatccgc
     2521 ggctgcgcac gatctccacg ccggtcgaga cgatcgacgc cgagctgcag acgctgatcg
     2581 atgatatgtt cgagaccatg tacgtcgcgc ccggcatcgg gctggcggcg attcaggtcg
     2641 gcgtgccgaa gcggcttttg gtgatcgacc tgcaggaaga gcaggatgaa gaaggcaagc
     2701 cgatcaagga tccgcgcgtt ttcatcaacc cggaaatcct cgagacttcc gatgaattgc
     2761 aggtctatca ggaaggctgc ctctcgatcc cggaccaata tgccgacgtc gagcgccccg
     2821 ctgcgattcg cgcgcgctgg caggatcgcg agggcaagac gcacgaggaa cggctcgaag
     2881 gcctgctcgc catatgcctg cagcacgaga tggaccacct cgaaggcatt ctcttcatcg
     2941 accatctgtc gcgtctgaag cgcgacatgc tgctcaagaa gctcgaaaag gcccgccgcg
     3001 cgaagaaggc ggcgtaaatc ctttttttgc gtcaccccag ccttcgtcgg ggtg
//
LOCUS       DASQVK010000439         3796 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_408099,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000439 DASQVK010000000
VERSION     DASQVK010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3796
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_408099"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..395)
                     /locus_tag="VE567_09495"
     rRNA            complement(<1..395)
                     /locus_tag="VE567_09495"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            complement(931..1359)
                     /locus_tag="VE567_09500"
     CDS             complement(931..1359)
                     /locus_tag="VE567_09500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010183989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HYZ49113.1"
                     /translation="MTIAAILKGREGQVISVAPDTRVADAIALLAEKRIGALPVLDDG
                     RVLGIFSERDVIYCLATNGAAALAMPVSEVMTAPVQTVEPNQSVLGALSLMTRRRFRH
                     LPVIEGDSLVGFVSIGDLVKYRIDKIEAEAAAMREYIQTA"
     gene            1424..1729
                     /locus_tag="VE567_09505"
     CDS             1424..1729
                     /locus_tag="VE567_09505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007689240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49114.1"
                     /translation="MADPKPDLSDPDYARFAWGRYRRLMGWMTAAALAVAAAALAIVW
                     AISGPLPLLFMIFTAGGVFLTVLLGAALMGLVFLSSGTGHDERIQDYSEEDDDDRFA"
     gene            1713..2090
                     /locus_tag="VE567_09510"
     CDS             1713..2090
                     /locus_tag="VE567_09510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003041896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HYZ49115.1"
                     /translation="MTDSPEPTLRVAPGPGDINANGHIFGGWVLSQMDIAAGIVAGRA
                     AQGPVATVAIEAMTFIAPILLQDIISVYAQVERRGRTSMGIRIEVIADRARGAEQVKV
                     TEGLFTFVALDENHRPRPIAWAG"
     gene            2156..2722
                     /locus_tag="VE567_09515"
     CDS             2156..2722
                     /locus_tag="VE567_09515"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HYZ49116.1"
                     /translation="MASRFTNPFGGRGSMSRDPFLDLHREVNRLFDDVFRSGGTGGGG
                     GAATMAAPSIDVHEIGDGLEISAELPGVAEKDIDLRLEGDVLTLSGEKHNERKDERAH
                     VVERSYGTFRRTVQLPFAPDPDKVSAACENGVLRIRLPRGTEQERSRKIEIGGGSSRG
                     GGEPRSAIGGDWSAPSESDTAQGQAERG"
     gene            complement(2745..3134)
                     /locus_tag="VE567_09520"
     CDS             complement(2745..3134)
                     /locus_tag="VE567_09520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017672531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HYZ49117.1"
                     /translation="MILPITLTIAGAAALINIWLAWRVGQRRISEKVSIGDGGNERLM
                     ARMRAHANYAEYTPFVLILIGLVELAAGTTLWLWAVGAIFLLARIAHALGMDRPAPNA
                     FRGAGTMVTMLTLAGLGIYAVVLAQMR"
     gene            3325..3504
                     /gene="rpmF"
                     /locus_tag="VE567_09525"
     CDS             3325..3504
                     /gene="rpmF"
                     /locus_tag="VE567_09525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HYZ49118.1"
                     /translation="MAVPKRKTSPSKRNMRRSHDALKATAFQECPNCGELKLPHNLCA
                     ACGHYNGREIVPVEA"
     gene            3534..>3796
                     /locus_tag="VE567_09530"
     CDS             3534..>3796
                     /locus_tag="VE567_09530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase"
                     /protein_id="HYZ49119.1"
                     /translation="MSDTPRIAIDAMGGDDGVTVMTEGAARALAADPGLKFLLVGDEG
                     AIAGALAALPALKAASEIRHAPEVIAGTDKPSQAIRRARTTSMG"
BASE COUNT          690 a         1237 c         1206 g          663 t
ORIGIN      
        1 aaccctaggg ccttcatcac tcacgcggca ttgctggatc aggctttcgc ccattgtcca
       61 atattcccca ctgctgcctc ccgtaggagt ctgggccgtg tctcagtccc agtgtggctg
      121 atcatcctct cagaccagct aaggatcgtc gccttggtga gcctttacct caccaacaag
      181 ctaatcctac gcgggctcat ccttgggcga taaatctttg gtcttacgac atcatccggt
      241 attagcacgc ctttcggcga gttattccga acccaagggc agattcccac gcgttacgca
      301 cccgtgcgcc actagacccg aaggtctcgt tcgacttgca tgtgttaggc atgccgccag
      361 cgttcgttct gagccaggat caaactctca agtttgatgt ccgcatccat gccgggagga
      421 atagtcccag cacgaacacg ctcatttcta ggagccgttc ctgcacaaat cacgtaatgg
      481 aaacgtgtta ggacatatgg ggcacccatc aaagcagcgc tttgaggaga tcccattggg
      541 aacggcttga tttttccgag cacccggcac ctagaagctg ccggacccgg ggccgccgcc
      601 cacatgtccc ttcatcttgc atcaacaatg tcaaagagcc gaaaacaggg acgccgtgtg
      661 gcttcccctt tttaccgggg taaccgggcg tcctgctttt gtgcgaccgc atcagtgggg
      721 gccgagtggc ccgcgtcgct gcggtgagag gccatatatg tggggcaaat ccgcccgtca
      781 acaacgtttt tgcatttttt gtgacgcggc ggaggatcgg cgctccaggc ccgccaaaag
      841 gcgaatatcg ggctgaaaac gcgtactgca agccccgctc cttttcacgc gtgcgcgcgt
      901 gcgcgcgttg gggccgcttc aggccgggat tcaggcggtc tggatatatt cgcgcatggc
      961 cgccgcttcg gcctcgattt tgtcgatccg gtatttcacc aaatcgccga tcgatacgaa
     1021 tccgaccagc gaatcgccct cgatgaccgg caaatgacgg aatcggcggc gcgtcatcaa
     1081 cgacagcgcg ccgagcacgc tctgattcgg ctcgacggtc tggacgggcg cggtcatcac
     1141 ctcggacacc ggcatggcga gcgccgccgc cccgttcgtc gccaggcaat agatcacatc
     1201 gcgttcggag aagatgccga gcaccctgcc gtcgtcgagg acgggcagcg cgccgattcg
     1261 cttttccgca agcagcgcga tcgcgtcggc cacccgagtg tcgggcgcga cgctgatgac
     1321 ttgcccctcc cgccctttga ggatcgctgc gatcgtcatg gccggcctcc tatatgcgct
     1381 tacccacatt gatgttcgcg gcgtttcccg caagggggca gtgatggccg atcccaaacc
     1441 cgatctgtcg gaccccgatt atgcgcgctt cgcctggggg cgctatcgcc ggctgatggg
     1501 ctggatgacg gcggcggcgc tggccgtcgc cgcggcggcg ctggccatcg tgtgggcaat
     1561 cagcggtccg ttgccgctgc tgttcatgat cttcactgcc ggcggcgtgt ttctgacggt
     1621 gctgctgggc gcggcgctga tggggctcgt gttcctgagc tcgggcaccg gccatgacga
     1681 acgaatccag gattattccg aggaagacga cgatgaccga ttcgcctgaa ccgactctgc
     1741 gcgtggctcc ggggcccggc gacatcaacg ccaacggaca tattttcggc ggctgggtgc
     1801 tgagccagat ggacattgcc gccgggatcg tcgccgggcg cgcagcgcag ggcccggtcg
     1861 ccaccgtcgc catcgaggcg atgacgttca tcgcgccgat cctcttgcag gacatcatct
     1921 cggtctatgc gcaggtcgag cggcgcggcc gcacctcgat gggcatccgc atcgaagtga
     1981 ttgccgaccg cgcccggggc gccgagcaag tgaaagtgac cgaaggcctg ttcaccttcg
     2041 tcgctctcga cgaaaatcac cgcccgcggc cgatcgcctg ggccggctga cgaggcgggg
     2101 aaccagccgc ctgcgccggg gttttggctg cgccagcagc caaggagagc agaccatggc
     2161 gtcacgcttc accaatccct ttggcggccg cggatcgatg agccgcgacc cgtttctcga
     2221 cctgcatcga gaagtgaacc gactgttcga cgatgttttc cgctcgggcg ggaccggcgg
     2281 cggcggcggg gcggccacca tggccgcgcc cagcatcgac gtgcatgaga ttggcgacgg
     2341 gctcgaaatc agtgccgaac tgccgggcgt cgccgagaag gacatcgact tgcgcctcga
     2401 aggcgatgtg ctgacgcttt ccggcgagaa gcacaatgag cgcaaggacg agcgcgcgca
     2461 tgtcgtcgag cgctcctacg ggacgttccg gcggaccgtc cagctcccct tcgcgcccga
     2521 ccccgacaag gtcagcgcgg cctgtgagaa tggcgtgctc aggatccgcc tgccgcgcgg
     2581 caccgagcag gagcgcagcc ggaaaatcga aatcggcggc ggcagcagta ggggcggcgg
     2641 cgaaccgcgc tccgcaatcg gcggcgactg gtccgccccc agcgaatcgg atacggcgca
     2701 gggacaggcc gagcgcggct gaggcgcccc ggcctagcct caggtcagcg catctgcgcg
     2761 agcacgacgg cgtagatgcc gaggcccgcc agcgtcagca tcgtgaccat ggtgccggcc
     2821 ccgcggaacg cgttcggcgc cggccgatcc atgcctaacg cgtgggcgat acgggcgagc
     2881 aggaaaatgg cgccgaccgc ccagagccag agcgtggtgc ccgcagcaag ttcgacgagc
     2941 ccgatcagga tcagcacgaa cggcgtatat tcggcgtaat tggcgtgggc gcgcatccgt
     3001 gccataagcc tttcattacc gccgtcgccg atcgaaactt tttccgaaat gcgccgctgg
     3061 cccacgcgcc aggcgagcca gatattgatg agcgccgcag cgcccgcaat cgtcagcgtg
     3121 atcggcagga tcatcgggtc ttgtccctcc ccaagggcaa agcgagactg gcatgcgcgc
     3181 gcaccgcttg caaccgcacg cgaatccgat atatgcgccc gctcgctcgc gatcagaccg
     3241 tggtccgcgg acccatgccg cattgctgca aaacggccgc ctgtcgcgtt tgtctgttga
     3301 atagagattg gaacaggtgc cgtcatggca gtgccgaaaa gaaagacctc gccctccaag
     3361 cgcaacatgc gccgcagcca tgacgcgctg aaggcgactg cgtttcagga atgcccgaat
     3421 tgcggcgagc tgaagctgcc ccacaacctg tgcgcggcgt gcggccatta taacggccgc
     3481 gagatcgtcc cggtcgaagc ctgaccgcgc caagcccgcg cagagagacc aaggtgagcg
     3541 acacgccgcg gatcgccatc gatgcgatgg gcggcgatga cggtgtcacg gtgatgaccg
     3601 aaggcgccgc gcgcgccctt gccgccgacc ctgggctcaa attcctgttg gtcggcgacg
     3661 aaggcgcgat agcgggggca ttggcggcgc ttccggcgct gaaggctgcg tcggagattc
     3721 gccacgcccc cgaagtgatc gccggcaccg ataaacccag ccaggccatc cgccgcgcgc
     3781 gcaccacttc gatggg
//
LOCUS       DASQVK010000440         3365 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_93256, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000440 DASQVK010000000
VERSION     DASQVK010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3365
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93256"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1511
                     /gene="pbpC"
                     /locus_tag="VE567_09535"
     CDS             <1..1511
                     /gene="pbpC"
                     /locus_tag="VE567_09535"
                     /inference="COORDINATES: protein motif:HMM:TIGR02073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009274 - peptidoglycan-based cell wall
                     [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin-binding protein 1C"
                     /protein_id="HYZ49120.1"
                     /translation="LTLAEAALLVALPQSPERRRLDRYPEAAREGRDRVLDRMVEEGV
                     LSDAEAAQAKSEPVPKFRKPMPILAPHSSDQAITAVRDSPVIRLTLDASLQRNLEALA
                     RDRAIAQGPNISVAIIAVDNESGDVLARVGSPDYFDERRAGQLDMTRAVRSPGSTLKP
                     FIYGLAFEDGFVHPESLIDDRPIRFGSYAPENFDMTFQGTVPVRKALQLSLNVPAIAL
                     LDRVGASRLSSRLKQAGTSLVLPKDEAPGLAMGLGGVGITLTDLAQLYAGLARLGATK
                     PLREIMLAKDEREPMRLMDQAAAWQVGNVLIGTPPPENGVHNKIAFKTGTSYGYRDAW
                     SVGFDGRITIGVWVGRPDGAPVPGLVGRTAAAPILFDAFARTGRIPAALPKPPKGALV
                     AGNAKLPLPLRRFRPLGELVRTGSDSAPHIQFPLNGSRIDVDRADDGRFAPMQVKISG
                     GVLPLTVLVNGIAVGDIDSRRQRLIDPPGPGFARLTVIDATGAADTIVIRVQ"
     gene            1585..3330
                     /locus_tag="VE567_09540"
     CDS             1585..3330
                     /locus_tag="VE567_09540"
                     /inference="COORDINATES: protein motif:HMM:NF014425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HYZ49121.1"
                     /translation="MVETVQTRRFGAGQQSVKPAHSGRRVAAAFEFATASHGRAALFL
                     MLCALVLFLPGFFTIPPIDRDEARFAQATKQMVESGDFVDIRFQDDVRYKKPVGIYWL
                     QCASVATASALGVPRAQLRIWLYRLPSLIGAIGAVLLIYWTALAFVTRRGAALAALMM
                     ASCVLLGAEARLAKTDAMLLLTVTAAMGALARVYLAWQRDEDPAHPPWSSPAIFWTAL
                     AGGILLKGPLILMFIGLTLAVLAFFDRSLAWFARMRPVWGLMWLLVLVLPWFVAIFLR
                     AGETFFADSVGGDMLSKFGAQESHGAPPGLYLLLFWVTFWPGAPLAGMAAPAVWRARR
                     EPGAQFLLAWLIPSWIVFEAVLTKLPHYVLPLYPAIAILTSGAVERRVLSRSPWLIRG
                     AAWWFAVPAIGSVIAVVGAIKLAHQPAFPAWPLLAAAMIFGLFAWWLFEDSRAERSLL
                     NAVIAAMFMALGVYGVVMPSLTTLFPSAQVARALRNVVCVRPKAAAAGFHEPSLVFMT
                     DTSTLLTDGSGAADFLAQGSCRFALVERVSERSFVQRAEAIGLRYNALVRIDGYNISQ
                     GRAVSIAIFRSEGTE"
BASE COUNT          467 a         1096 c         1163 g          639 t
ORIGIN      
        1 ggctgacatt ggcggaagcg gcgctcttgg tcgcactgcc gcaatcgccg gagcggcggc
       61 ggctcgatcg ctatccggaa gctgcgcgcg aggggcgcga ccgcgtgctc gatcgcatgg
      121 tggaggaggg cgtgttgtcg gatgcggaag cggcgcaggc caaatccgag ccggtgccga
      181 aattccgcaa gccgatgccg atcctggcgc cgcattcctc cgaccaggcg atcacggcgg
      241 tgagggattc tcccgttatc cggctgacgc tggacgcttc tttgcaaaga aatctggaag
      301 cgctggcgcg cgaccgcgct atcgcgcaag gccccaatat ttcggtcgcg atcatcgcgg
      361 tcgacaatga gagcggcgac gtgctggccc gcgtcggctc gccggactat ttcgacgagc
      421 gccgtgccgg ccagctcgac atgacccgcg cggtgcgctc gccgggctcg acgctgaagc
      481 cgttcatcta tgggctggcg ttcgaggacg gctttgtgca tccggaaagc ctgatcgacg
      541 atcgtcccat ccgtttcggc tcctacgcgc cggaaaattt cgacatgaca ttccagggca
      601 cggtgccggt gcgcaaggcg ctgcagctct cgctcaacgt gcccgcgatc gcgctgctcg
      661 atcgcgtcgg tgccagccgt ctgtcatcgc ggctgaagca ggccggcacc agtctcgtgc
      721 tgccgaagga cgaagcgccc gggcttgcga tgggcctcgg cggcgtcggc atcaccctga
      781 ccgatctggc gcagctttat gccgggctcg cccggctcgg cgccaccaag cctctgcgcg
      841 agatcatgct ggcgaaagat gagcgcgagc cgatgcggct gatggatcag gccgccgcct
      901 ggcaggtcgg caatgtcctg atcggcactc cgccgccgga gaacggcgtg cacaacaaga
      961 tcgcgttcaa gaccggcacc agctacggct accgcgacgc ctggtcggtc ggtttcgacg
     1021 gccgcatcac catcggcgtc tgggtcggac ggcctgacgg cgcgccggtt ccggggctgg
     1081 tcggccgaac cgccgcggcg ccgatcctgt tcgatgcctt cgcccgcacc ggaagaattc
     1141 cggcggcgct gccgaagccg ccgaagggcg cgctggtcgc gggcaacgca aagctgccgc
     1201 tgccgctcag gcggttccgg ccgctcggcg agctcgtccg caccggcagc gattcggcgc
     1261 cgcacatcca gtttccgctg aacggctcgc gcatcgacgt cgaccgcgcc gatgacggca
     1321 ggttcgcgcc gatgcaggtg aaaatatcgg gcggcgtgct gccgctgacc gtgctggtga
     1381 acggcatagc cgtcggcgat atcgacagcc gccgccagcg cctgatcgat ccgccggggc
     1441 cgggctttgc gcgattgacg gtgatcgacg ccaccggcgc cgccgatacc atcgtgatcc
     1501 gggtgcagta agccctcgac gataccgctt gccttccgga actgtggtgt tgtttgccct
     1561 gccgtttcat cgtatgcgaa cggcatggtt gaaaccgtcc agacccgccg cttcggagcg
     1621 ggccaacagt ctgtaaaacc tgcgcattcc ggccgcaggg tggcggccgc gttcgagttc
     1681 gccaccgcca gtcatgggcg cgcggcgctg ttcctgatgc tgtgcgccct ggtgctgttc
     1741 ctgccgggtt tcttcaccat tccgccgatc gaccgcgacg aggcacgttt tgcgcaggcc
     1801 accaagcaga tggtggaaag cggcgacttc gtcgacatcc gcttccagga tgatgtccgc
     1861 tacaagaagc cagtcggcat ctactggctg caatgtgcga gtgttgcaac cgcatccgcg
     1921 ctcggcgtgc cgcgggcgca actgcggatc tggctgtacc ggttgccgtc gctgatcggc
     1981 gccatcggtg cggtgctgct gatctattgg accgcgcttg ctttcgtcac acgacggggg
     2041 gcggcgctcg ccgcgctgat gatggcgagt tgcgtgctgc tcggcgccga ggcacggctc
     2101 gccaagaccg acgcgatgct gctgctgacc gtcaccgcgg cgatgggggc gctggcgcgg
     2161 gtgtatcttg cctggcaacg cgacgaggac ccggcgcatc cgccatggtc gtcgccggcg
     2221 atattctgga ccgcgctcgc cggcggcatc ctgctcaaag ggccattgat cctgatgttc
     2281 atcgggctga ccctcgcggt actggccttc ttcgaccgtt cgttggcgtg gtttgcgcgc
     2341 atgcgcccgg tctggggcct gatgtggctg ttggtgctgg tgctgccgtg gtttgtcgcg
     2401 atcttcctgc gcgcgggcga gacttttttc gccgactcgg tcggcggcga tatgctgagc
     2461 aagttcggag cgcaggaatc ccatggggcg ccgccggggc tctatcttct gctgttctgg
     2521 gtgacgttct ggccgggcgc cccgctggcc ggcatggcgg cgcccgcggt gtggcgggcc
     2581 cgtcgggagc ccggcgcgca gttcctgctg gcctggctga tcccgtcgtg gatcgtgttc
     2641 gaggccgtgc tgacaaaact gccgcattac gtgctgccgc tctatccggc gatcgccatc
     2701 ctcacctcag gcgcggtgga gcggcgggtg ctgtcgcgat ccccctggct gatccgcggc
     2761 gcggcctggt ggtttgcggt ccccgcgatc ggctcggtca ttgcggtcgt cggcgcgatc
     2821 aagctcgcgc atcagccggc atttcccgcc tggccgctgc tggccgccgc gatgattttt
     2881 ggcctgttcg cctggtggct gttcgaggac agccgcgccg agcgctcgct gttgaatgcg
     2941 gtgatcgcgg cgatgtttat ggcgctcggg gtctatggcg tggtgatgcc gtcgctgacg
     3001 acgctgtttc cgagcgcgca ggtcgcgcgc gccttgcgca atgtcgtctg cgtgcgcccg
     3061 aaggccgccg ccgcaggttt tcacgagccg agcctcgtct tcatgaccga tacttcgacc
     3121 ttgctgacag acggatcggg cgcggcggat ttcctggcgc aggggagttg ccgcttcgcg
     3181 ctggtggagc gggtttctga gcgcagcttc gtgcagcgcg ccgaagcgat cgggctgcgc
     3241 tacaatgcgc tagtccgcat cgacggctac aacatctcgc agggcagggc ggtttcgatc
     3301 gcgatcttcc gttccgaagg cacggaataa gatgtccgtg ccggtcggcc tccaggaatc
     3361 ccaaa
//
LOCUS       DASQVK010000441         2658 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_281840,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000441 DASQVK010000000
VERSION     DASQVK010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2658
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281840"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..623
                     /locus_tag="VE567_09545"
     CDS             <1..623
                     /locus_tag="VE567_09545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HYZ49122.1"
                     /translation="LLSPGECAGVARLYGHEPSFRTRIVMERHAFGRGEYKYFGYPLP
                     PQVEALREALYFRLAPIANRWAERLRLDTRYPPGLDAFLRTCHEAGQTRPTPLLLRYD
                     AEGYNCLHQDLYGSIAFPLQATVLLSRPGEDFAGGEFLLVEQRPRAQSRGEVVPLEQG
                     QAVLFANSERPVPGARGFYRVKLRHGVSRVTSGHRMTLGLIFHDSR"
     gene            934..>2658
                     /locus_tag="VE567_09550"
     CDS             934..>2658
                     /locus_tag="VE567_09550"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HYZ49123.1"
                     /translation="MQRKLTTILVADVEGYSRLMSRDEEGTHARLAALRCELLERAIA
                     AHGGTLVKRTGDGLLAEFASVVEAVRCAIEIQQGAAERNAGSPPDQHIAFRIGINLGD
                     VIVEQDDIFGDGVNVAVRLEGLAEPGGIVISRGVRDHVRDRLRLSFEDMGEQRVKNIA
                     RPVRAFRVRAEGAATSGRADSARPGIRRRVLAGGAALGAAMVIAGGAWLRDPGSLLGL
                     ATALLRPSSEAPARVDAAPRLSIVVLPFANLGGDPQQDYFVDGITESLTTDLSRALPG
                     SFVVARGTAFTYKGKTVDAGQVGRDLNVRYLLQGSVFADADRMRVNAQLIDAQTSTEL
                     WAERFDKQRKDVLEVQDQIVGRLSRAVGLQVIDIEARRSERERPHDPTAIDLVMRGQA
                     LANRPTSRETMIGARALFQRALEYDPDNVDALAGVATTYVFEVLNSYYAIGRDQRLRE
                     ADALIRRALASDPRHIVALKAHAAVLRAEGNFVDAIAASQVVIAQNPGEPWAYKEVGL
                     SELYLGRLEEALQWFDRADQLGPRDPGRWIWLGAMGRVHFFLGRDEEAIRLFRRSADA
                     NPNDVRAYA"
BASE COUNT          428 a          912 c          927 g          391 t
ORIGIN      
        1 cgctgctttc gccgggcgaa tgcgccgggg tggcgcggct ctacggtcac gagcccagct
       61 tccgcacgcg tatcgtaatg gagcggcatg ccttcgggcg cggcgagtac aagtacttcg
      121 gctatccgtt gccgccgcaa gtcgaggcgc tgcgcgaggc gctctacttc cgtctcgcgc
      181 cgatcgcgaa ccgctgggcc gagcggcttc gcctcgatac ccgctacccg ccggggctcg
      241 acgccttcct ccgcacctgc cacgaggcgg gccagacgcg gccgacgccg ctgctgctgc
      301 gctacgacgc ggagggctac aactgccttc accaggacct ctacggcagc atcgccttcc
      361 cgctgcaggc gacggtgctg ctgagccgcc cgggcgagga tttcgccggc ggcgagttcc
      421 tcctcgtcga gcagcggccg cgcgcccagt cgcgcggcga ggtcgtcccg ctggagcaag
      481 gccaggcggt cctcttcgcc aacagcgaac ggccggtccc cggggcgcgc ggcttctacc
      541 gggtgaagct gcgccatggg gtgagccgcg tcaccagcgg ccaccgcatg acgctcggcc
      601 tcatcttcca tgactcgcgg tagcgtcacg ccgctgccgc caagactacg gccggttacg
      661 gcgcaagatc gcccgatccc gacaaaacac ggtcgcggag atttgccgag acagtggcct
      721 cgaacacatc tcgcttgacc tgacggcagt agagtgccag cgctgttgct tgccggcgtc
      781 gacggttccc atcgaggccg ggccgttttg cctcgcgccg gacggctgaa gccggtggcg
      841 cggcgaacga aatagcggcc gcggggaacc gaaatggcgg cgtgtcggac agaccggatc
      901 gcggctcggc aagagccatg ggaggtagcg agcgtgcagc gcaagctgac cacgatcctc
      961 gtggccgatg tcgagggata cagccggctt atgagccgcg acgaggaggg cacccacgcc
     1021 cgccttgccg cgctgcgctg cgagttgctc gagcgcgcga ttgccgcgca cggagggacg
     1081 ctcgtcaaga gaaccggcga tggcctgctg gccgaattcg ccagcgtcgt cgaagccgtg
     1141 cgctgcgcga tcgagatcca gcagggcgcc gccgagcgaa acgcggggag cccgcccgac
     1201 cagcacatcg ccttccgcat cggcatcaac ctcggcgacg tcatcgtcga acaggacgac
     1261 atcttcggcg atggcgtgaa tgtcgccgtc cgcctcgaag ggttggccga gcccggcggg
     1321 atcgtgatct cccgcggggt acgggatcac gtccgcgaca ggctgaggct gagcttcgag
     1381 gacatgggcg aacagcgcgt caagaacatc gcgcggccgg tccgcgcctt ccgcgtccgg
     1441 gccgagggcg ccgccacaag cgggcgcgcg gacagcgcgc ggccgggcat ccgccgccgc
     1501 gttctcgcgg gaggcgccgc gctgggagcg gcgatggtga tcgcaggggg agcgtggctg
     1561 agggatccgg gctcgctgct gggactagcg accgcgctat tgcggccgtc gtcggaggcg
     1621 cccgcgcgtg tcgacgcagc gccacgcctt tcgatcgtcg tgctgccctt cgccaatctc
     1681 ggcggcgatc ctcagcagga ttatttcgtg gatggtatca ccgaaagtct gaccacggat
     1741 ctttcccgcg cgcttcccgg cagcttcgtg gtcgcccgcg gcaccgcctt cacctacaag
     1801 ggcaagacgg tcgatgcagg gcaggttggc cgcgatctca acgtccgcta cctgctccag
     1861 ggaagcgtct tcgcggacgc cgaccggatg cgggtcaatg cccagctgat cgacgcccag
     1921 accagcaccg agctgtgggc cgaacggttc gacaagcagc ggaaggacgt gctcgaggtt
     1981 caggaccaga tcgtcggccg cctgtcgcgc gccgtcggat tgcaggtgat cgacatcgaa
     2041 gcgaggcgca gcgagcgcga gcggccccac gatccgacgg ccatcgactt ggtgatgcgc
     2101 ggccaggccc ttgcgaaccg gccgacctcg cgcgagacca tgatcggcgc gcgcgccctc
     2161 ttccagaggg ccctcgaata cgatcccgac aatgtcgatg cgctcgccgg ggtcgcgacc
     2221 acctacgtct tcgaagtgtt gaacagctac tacgcaatcg ggcgagacca gcggctgcgg
     2281 gaggcggacg cgctgatccg gcgcgcgctt gcgagcgacc cgcgccacat cgtagcgctg
     2341 aaggcccacg cggcggtgct gcgcgcggaa ggcaatttcg tcgacgcgat cgccgcgagc
     2401 caagtcgtga tcgcgcagaa cccgggcgag ccctgggcgt acaaggaggt cgggctgagc
     2461 gagctctacc tcggccgcct ggaggaagcg ctccaatggt tcgaccgggc cgaccagctc
     2521 ggcccgcgtg atccaggccg atggatatgg ctcggcgcaa tgggacgggt gcacttcttc
     2581 ctcggccgcg acgaggaggc gatacgactg ttcaggcgtt ccgccgacgc aaacccgaac
     2641 gacgtccgcg cctacgcc
//
LOCUS       DASQVK010000442         7448 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_29400, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000442 DASQVK010000000
VERSION     DASQVK010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 7448)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7448)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7448
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29400"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..196
                     /locus_tag="VE567_09555"
     CDS             <1..196
                     /locus_tag="VE567_09555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008829079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HYZ49124.1"
                     /translation="FLASVEVFPFDAAAARTYARLPFRGGSFDRLIAAHALALGLVLV
                     TNNERDFVDVPNLLVENWTK"
     gene            193..930
                     /gene="trmD"
                     /locus_tag="VE567_09560"
     CDS             193..930
                     /gene="trmD"
                     /locus_tag="VE567_09560"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004208092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HYZ49125.1"
                     /translation="MTFAATVLTLYPEMFPGPLGHSLAGRALAEGVWSLDTVQIRDFA
                     TDKHRSVDDTPAGGGAGMVMRVDVLAAAVDHARARRPQAPVLAMSPRGAPLTQARVRE
                     LAAGPGVTVLCGRFEGFDERIFEGRDVESVSIGDFILSGGEIGALVLLDACIRLLPGV
                     MGAASSGIEESFESGLLEYPHYTRPVDWEGRTIPEVLRSGDHARIAAWRKHQAETDTR
                     LRRPDLWERHTGARDQSPSGARQRTRD"
     gene            937..1329
                     /gene="rplS"
                     /locus_tag="VE567_09565"
     CDS             937..1329
                     /gene="rplS"
                     /locus_tag="VE567_09565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HYZ49126.1"
                     /translation="MNLIQQLEAEQIAKFNEAKKIPEFRPGDTVRIGVKVVEGDRTRV
                     QAYEGVCIARSNKGMGSSFTVRKISFGEGVERVFPLYSPNIDSIDVVRKGHVRRAKLY
                     YLRGRTGKAARIAERRDNRANAAVEAAE"
     gene            1745..3439
                     /locus_tag="VE567_09570"
     CDS             1745..3439
                     /locus_tag="VE567_09570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013848487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HYZ49127.1"
                     /translation="MPRLASHDPKLLRQRARGLRAAGEHGEAERLELAAIEASVANPV
                     LIEAGAALVEGELRQAEQLLRPYLREDPFDVAAIRMMAELAGRLGRYRDAEALLRRAL
                     ELAPGFRPARANLATVLHRQNKAVEALAELDGLMAEDPDNPGHANLKAAALGRIGEFD
                     EAIELYESVLAKAPDQPKVWMSYGHVLKTVGRQEDSVAAYRRAIALRPGLGEVWWSLA
                     NLKTVRFTDADVAAMQVALGGGGLTDDDQLHLHFALGKALEDRGDAEVSFRHYAEGNA
                     IRRHQLPYEPQDTQEQVARAKALYTPEFFAARKGWGCPAPDPIFILGMPRAGSTLIEQ
                     ILASHSQVEGTMELPDIPALAARIGAGGKRITDLPAGQVRALGEEYLERTRIQRKTDR
                     PFFIDKLPNNWAHVGFIRLILPNAKIVDARRHPLASCFSNFKQHFAKGQSFTYGLRDV
                     GLYYASYVELMAHFDRVLPGFLHRVIYERLVEDSDSEIRTLLDAMALPFEEACLRFWE
                     TERAVRTASSEQVRRPINREGLEPWRPFDPWLGPLKQALGDILAAYPEVPSRLTVA"
     gene            3579..6182
                     /locus_tag="VE567_09575"
     CDS             3579..6182
                     /locus_tag="VE567_09575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYZ49128.1"
                     /translation="MIALLGSSALAGPALGQAQQPSQPPQAVNGNEAIGDIIVTAQKR
                     EESLQNVPISVQALGTQKLEQLNISNFNDYTRLLPSVAFQTVAPGVTTVYIRGVASGG
                     DGNHSGSLPSVGFYLDEQPITTIGGTLDVHIYDVARIEALAGPQGTLYGASSEAGTVR
                     IITNKPSTAGFEGGFDVEGNTVHKGGQGGKVEGFVNVPLNDWMAVRAVGFYQHDAGYI
                     DNIPGTRTFIAGGDPAAPVVNPNGLSFNNNSIAKKDINDVDTYGGRLALGIDLSDDWT
                     ATASVFGQDQKAHGSFGYDTSLGDLKAQRFFPEFNHDRWYQAALTVQGKIGNWDLTYA
                     GAYLDRRRNSHSDYTDYAEAYDAIYANYPLYDDNGAVTGYLHGLAEVFYYQDNAGNTI
                     LPVQHILGSDHFRRISQELRIASPAEEPFRVVGGLFYQRQSNLIHQDYKVDNLGAQVS
                     VNGMPGTLWLTQQKRVDRDYAVFGEASWDITPRLTLTGGLRGYRYDNTLIGFFGFGRN
                     PAAEDPTGVNGDPRAFTASPFNAAASSRTGVAGCYTTDGRTLRDVINSSNDAVNLLPP
                     AVKGSPCTNLAEFKNGKLVPKRTKDEGVIYRVNLTWKPVDGKMIYATWSKGFRPGGIN
                     RRASIAPYQADFLVNYEVGWKTTWGNSLRWNGAFFWQDWKKFQFSFLGQNSFTEIHNG
                     PNARIKGVETDFTWTPLTGLTLSGSAAYTDAKTRQNLCLADDPTFICAAPNKISAPKG
                     TRLPITPRFKFSSTARYQFETGTDLKPYVQAVVSHSSSAASDIRFLDSSGNNPRVQQG
                     NLPAWTTVDFAVGAAWQKITAELFVQNAFDERAQISRYVQCGQCLPPVGRVYAVVQNP
                     RTIGIRAGYRF"
     gene            6209..6871
                     /locus_tag="VE567_09580"
     CDS             6209..6871
                     /locus_tag="VE567_09580"
                     /inference="COORDINATES: protein motif:HMM:NF022142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2490 domain-containing protein"
                     /protein_id="HYZ49129.1"
                     /translation="MGGHFARSMAALLTLAVAAPAAAEGVQIWSTASLNAPLAGQWRG
                     QVDLSGRTRGGYANGQFVGRLTILHAVAPGLVAGGGYAHNSNYPARGAVTTEGQLFEQ
                     LIWDIPAGPIRLAARTRLEQRFQEGVDGTAWRLREQVKLSMPLWHSKMRAVLFAEPFL
                     NLNHTSRVREDFDQLRSFAGLNLPLTRHAALEFGYLGQFRHRLSGNSWIHAVPLTLSV
                     RL"
     gene            6981..>7448
                     /locus_tag="VE567_09585"
     CDS             6981..>7448
                     /locus_tag="VE567_09585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006965107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HYZ49130.1"
                     /translation="MTRSRHLVAAALAALSFASPVMAQQTLTLERIFANPSLAGPTPR
                     LLKLSPDGRWLTSLRNRPDEKERFDLWALDTATGAERMLVDSKKFETGAELSEAERMQ
                     RERARIADQKGIVAYDWSKDARTLLVPVDGDLYLASIDGQVRRLTSTPTSELDG"
BASE COUNT         1328 a         2441 c         2389 g         1290 t
ORIGIN      
        1 gtttctggcc tcggtcgagg tgtttccctt cgatgcggct gcagctcgca cctatgcgcg
       61 gcttccattc cgcggaggct cgttcgatcg attgatcgcc gcgcatgcgc tggcgctggg
      121 tttggtcctg gtgaccaata atgagcgtga ctttgtggac gttcccaatt tgctcgtcga
      181 gaattggacc aagtgacctt cgccgccact gttcttaccc tctacccgga gatgtttccc
      241 ggcccgctgg ggcacagcct tgcggggcgg gcgctggcgg agggcgtctg gtcgctcgac
      301 acagtgcaga ttcgcgattt cgcgaccgac aagcaccgtt cggtggacga cacgccggcc
      361 gggggtgggg cggggatggt gatgcgggtg gacgtgcttg ccgccgccgt cgatcatgct
      421 cgcgcgcgcc gaccccaagc gccggtgctg gcgatgagcc cgcggggggc accgctcact
      481 caggcgcggg tgcgggagct tgccgccggg cccggcgtca ccgtcctgtg cggccgcttc
      541 gagggtttcg acgagcgaat tttcgagggg cgggacgtcg aatccgtctc gatcggggat
      601 tttattctct ccggcggcga gatcggcgcg ctggtgctgc tcgatgcttg cattcggctg
      661 cttccgggcg taatgggcgc cgcttccagc gggatcgagg agagcttcga aagcggtctg
      721 ctcgaatatc cgcattatac ccgaccagtc gactgggaag ggcgcacgat ccccgaagtg
      781 ctgcgatcgg gggatcatgc gaggatcgcc gcctggcgga aacaccaggc ggagaccgac
      841 acacggctaa ggcggccgga cctttgggag cgccatacgg gcgctcggga ccagtcgccc
      901 tctggcgcgc ggcaacgaac tagggactga agaccaatga acctgatcca gcagctcgag
      961 gccgagcaga tcgccaagtt caacgaagcg aagaagattc ccgaattccg ccccggcgac
     1021 acggtgcgca tcggcgtgaa ggtcgtcgaa ggcgaccgca cccgcgtgca ggcctatgaa
     1081 ggcgtttgca tcgcccggtc gaacaagggc atgggctcgt ccttcactgt ccgcaagatc
     1141 agcttcggcg aaggcgtgga gcgcgtcttc ccgctttatt cgcccaacat cgactccatc
     1201 gatgtggtgc gcaagggcca tgtccgccgc gccaagctct attacctgcg cggccgcacc
     1261 ggcaaggccg cccgcatcgc cgagcgccgc gacaaccgcg ccaacgcggc ggtcgaagcg
     1321 gccgaataag tctttcaaga caaacactat ctataagggc cggcggcatg tttcgccggc
     1381 ccttatagtc agcatggcgg ataccagggg taacccacta tttgccacag gcggccagcg
     1441 acgcccggtg cgcgagcggc ccccattttc cgtccttccg aactcaaacc cggcaccgcg
     1501 cgcctgctcc cgctcgcgct gatcctgctg ctcgcgcgcg cgatcgggcg acggtgcagg
     1561 gcgcggtcag cgaggagctg gtcgcaatgg agaacgccgc gctcgtcaat ggccgccggg
     1621 gcgaggctgt gcgccgccgc gtcgaaaccc tgcgcaggcg cattgacgag tcgatcgaga
     1681 aactgctcgc gacctgatcc gcgcccggtt gcgccgggct agcggagcgg gcaatcaaca
     1741 agcgatgccg cgcctggcta gtcacgatcc gaagctgctc cggcagcgcg cacgcggttt
     1801 gcgcgcggcg ggggagcatg gcgaagccga gcggctcgag ctcgccgcga tcgaagcctc
     1861 ggtggccaat ccggtgctga tcgaggcggg ggcggcgctg gtcgagggcg agttgcgcca
     1921 ggccgagcag ctgctgcgcc cctatttgcg cgaggacccg ttcgacgtcg ccgcgatccg
     1981 gatgatggcg gagcttgcgg gcaggctcgg ccgctaccgg gatgcggaag cgctgctgcg
     2041 ccgcgcgctg gagctggcgc ccggctttcg gccggcgcgg gccaatctcg cgacggtgct
     2101 gcaccgccag aacaaggcgg tggaagcgct cgccgagctt gacggcctta tggccgaaga
     2161 ccctgacaat cccggccacg ccaatctgaa ggccgctgcg ctcggccgga tcggagagtt
     2221 cgacgaagcg atcgaactct atgaaagcgt gctcgccaag gcgcccgacc agcccaaggt
     2281 ctggatgagc tacggccatg tgctgaagac ggtcgggcgg caggaggact cggtcgccgc
     2341 ctaccgccgg gcaatcgcgc tcaggcccgg gcttggcgaa gtctggtgga gtctcgccaa
     2401 tttgaagacc gtgcgtttca cggatgccga tgtcgctgcg atgcaggtgg cgctgggcgg
     2461 cggcggcctc accgacgacg accagctgca cctgcatttc gcgctcggca aggcgctgga
     2521 ggaccgcggc gatgccgaag tttcgttccg ccactatgcc gagggcaacg cgatccgccg
     2581 ccaccagctt ccctacgagc cccaggacac gcaggagcag gtcgcgcgcg ccaaggcgct
     2641 ctacacgccc gaattcttcg ccgcgcggaa gggctggggc tgcccggcgc ccgacccgat
     2701 cttcattctc ggcatgccgc gtgcgggctc cacgctgatc gagcagatcc tcgccagcca
     2761 cagccaggtc gaaggcacga tggagctgcc cgacattcct gcattggccg cgcgcatcgg
     2821 tgcgggcggg aagcggatca ccgatcttcc tgccggtcag gtccgcgcgc taggcgagga
     2881 atatctggag cgcacgcgca tccagcgaaa gaccgaccgg ccgttcttca tcgacaaatt
     2941 gccgaacaac tgggcgcatg tcggcttcat ccggctgatc ctgcccaatg cgaaaatcgt
     3001 cgacgcgcgg cgccatccgc tcgcgagctg cttttccaac ttcaagcagc atttcgcgaa
     3061 aggccagagc ttcacttacg gcctgcgcga cgtcgggctc tattacgcca gctatgtcga
     3121 gctgatggcg catttcgaca gagttttgcc cggctttctg caccgcgtca tttacgagcg
     3181 gcttgtcgag gacagcgaca gcgagatccg cacgctgctc gacgccatgg cccttccgtt
     3241 cgaggaagcg tgcctccgct tctgggagac cgagcgcgcg gtgcgcacgg cgagttctga
     3301 acaggtccgc cgcccgataa accgcgaagg gctggagcct tggcggccct tcgatccctg
     3361 gctcggcccg ctcaagcaag ccctcggcga tattctcgcg gcctatccgg aggtgccgtc
     3421 ccggctgacc gttgcataaa cgcaacatgg gggcgggaaa gtaccgcgcc gcagcagcta
     3481 gctatttgac gctttgatga aacgcgcgaa gcttcggctg aggctgggga accctcgtgg
     3541 ggagaagcgt tgtgcgctgc aacaattgga caccgttgat gatcgcgctg ctgggcagct
     3601 cggcgctcgc cggcccggcg ctcggccagg cgcagcagcc gtcgcagccg ccgcaggcgg
     3661 tgaacggcaa tgaagcgatc ggcgatatca tcgtcacagc ccaaaagcgc gaggagagcc
     3721 tccagaacgt gccgatcagc gtccaggcgc tcggcacgca gaagctcgag cagctcaata
     3781 tttctaactt caacgattat acccgcctgc tgccaagcgt ggcgttccag acggtcgccc
     3841 cgggcgtcac tacggtctat atccgcggcg tcgcgagcgg cggcgacggc aaccattctg
     3901 gctcgctgcc gtctgtcggt ttctatctcg acgagcagcc gatcaccacg atcggcggca
     3961 cgctcgacgt ccacatctat gatgttgccc ggatcgaggc gctggcgggc ccgcaaggca
     4021 cgctgtacgg cgcctcgtcc gaggcaggca cggtccgcat catcaccaac aagcccagca
     4081 ctgctggctt cgaaggcggc ttcgacgtgg agggcaacac cgtccataag ggcgggcagg
     4141 gcggcaaggt cgaagggttc gtcaatgttc cgctcaacga ctggatggcc gtgcgcgcgg
     4201 tgggcttcta tcagcacgac gccggctata tcgacaatat tcccggcact cggacgttta
     4261 tcgccggtgg cgacccggcg gcccccgtgg tcaacccgaa cggcctgtcc ttcaacaata
     4321 actccatcgc gaagaaggat atcaacgacg tcgataccta tggcgggcgg cttgcgctcg
     4381 gcatcgacct gtcggacgac tggactgcca ccgcctctgt gttcggccag gaccagaaag
     4441 cgcacggctc cttcggttac gacaccagcc tgggcgactt gaaagcccag cgcttctttc
     4501 ccgagttcaa tcatgatcgc tggtatcagg ccgcgctcac ggtccagggc aagatcggca
     4561 attgggacct gacttatgcc ggcgcctatt tggaccggag acgcaatagt cactcggact
     4621 atacggatta tgccgaggca tatgatgcga tctatgccaa ttacccgctg tacgacgaca
     4681 atggcgccgt cactggatat ctgcatggcc ttgccgaagt cttttattat caggacaatg
     4741 ccgggaacac gatcctcccc gtccagcata ttctcggcag cgatcatttc cggcggatca
     4801 gccaggaact gcgcatcgct tcgccggcgg aagagccgtt ccgcgtcgtc ggcggccttt
     4861 tctaccagcg tcagtcgaac ctgatccacc aggactataa ggtcgacaat ctcggcgcgc
     4921 aggtttccgt caacgggatg ccgggcacgc tgtggctcac gcagcagaag cgcgtcgacc
     4981 gcgactatgc cgtgttcggc gaagcgagct gggacatcac gccgaggctg acgctgaccg
     5041 gcggcctgcg cggctacaga tatgacaata cgctgatcgg atttttcggc tttggccgca
     5101 atccggccgc cgaagacccg actggcgtca atggcgatcc gcgggcgttc acggcctcgc
     5161 cgttcaacgc ggcggccagc tcgcggaccg gcgtcgccgg ctgctacacg acggacggcc
     5221 gcacgctgcg ggacgtcatc aacagcagca acgacgcggt caacctgctg ccccctgccg
     5281 tgaagggcag cccctgcacc aatctcgccg agttcaagaa cggcaagctg gtgcccaagc
     5341 gcaccaagga cgagggggtc atctaccgcg tcaacctgac ctggaagccg gtcgacggaa
     5401 agatgatcta cgcgacctgg tccaaggggt tccgcccggg tggcatcaac cgccgcgcct
     5461 ccatcgcgcc ctaccaggct gatttcctcg tcaattatga ggtcggctgg aaaaccacct
     5521 ggggcaattc gctgcgctgg aatggcgcct tcttctggca ggactggaag aaattccagt
     5581 tcagcttcct cggccagaac agcttcactg aaatccacaa cggcccgaac gcccggatca
     5641 agggcgtcga gaccgacttt acctggacgc cgctgactgg gctgaccctg tcgggcagcg
     5701 ccgcctatac cgatgcaaag acccggcaaa atctctgcct ggcggacgac ccgaccttta
     5761 tctgcgccgc accgaacaag atctccgcgc ccaaaggcac acggctcccg atcacgccgc
     5821 ggttcaagtt cagcagtacc gcccgttacc agttcgaaac ggggaccgat ctgaagcctt
     5881 acgtccaggc ggtcgtatcg cattccagtt cggccgcgtc ggacatccgc ttcctggaca
     5941 gcagcggcaa caatccgcgc gtccagcagg ggaatctgcc cgcctggacg actgtcgatt
     6001 tcgcggtcgg cgcggcgtgg caaaagatca cggccgagct gttcgtgcag aacgcgttcg
     6061 acgagcgcgc gcagatatcg cgctatgtcc aatgcggaca gtgcctgccg ccggtcggcc
     6121 gcgtctatgc cgtcgtgcag aacccgcgca cgatcggcat tcgcgccggc tatcgcttct
     6181 gattgagcca ctgtagcacc gggcgatcat ggggggtcat ttcgcccggt ctatggcggc
     6241 attgctcacg ctcgccgttg ccgcgccggc agcggcggag ggcgtgcaga tttggtcgac
     6301 cgcaagcctc aatgcgcccc ttgcggggca gtggcgcgga caggtcgatt tgagcggcag
     6361 gacgcgcggg ggctatgcca atggccagtt cgtcgggcgc ctgaccattc ttcacgcggt
     6421 cgcgccgggc ttggtcgccg gcggcggcta tgctcacaac agcaactatc cggcccgcgg
     6481 ggcggtcacg accgaaggtc agctgttcga gcagctcatt tgggacatac cggcaggccc
     6541 gatccggctg gcggcgcgca cgcggctcga acagaggttc caggaggggg tggatgggac
     6601 ggcctggcgg ctgcgcgagc aagtgaagct gtctatgccg ctgtggcaca gcaaaatgcg
     6661 ggcggtgcta ttcgccgagc cgttcctgaa tctgaatcac accagtcgcg tgcgggagga
     6721 tttcgatcag ctccgcagtt tcgcggggct gaacctgccg cttacgcgtc acgccgcgct
     6781 ggagttcggc tatctcggcc aattccggca tcgcctctca ggcaatagct ggatccacgc
     6841 cgtgccgctc acgctgagcg tacgcctgtg accaaaattc tgtcctacac cccgcaccct
     6901 atgccaaggt cacgcagcta agatcgcacc ggagggggaa cagcgtgttt ttttatacac
     6961 atgcacaaac ttcgcttatt ttgacgcgct ctcgccacct cgtcgccgcg gcgcttgcgg
     7021 cgctttcatt cgcttctccg gtcatggccc agcagacact cacgctcgaa cgcatcttcg
     7081 ccaatccgtc gctcgccggc cccactccgc ggctgctcaa gctttcgccc gacgggcgct
     7141 ggctgacatc gctgcgcaac cgccccgacg agaaggagcg gttcgatctc tgggcgctcg
     7201 acaccgccac cggcgccgag cgcatgctgg tcgattcaaa aaaattcgag accggcgccg
     7261 aactttccga agccgagcgc atgcagcgcg aacgcgcgcg catcgccgac cagaaaggaa
     7321 tcgtggccta tgattggagc aaggatgccc gcactttgct cgtcccggtc gacggcgatc
     7381 tctatcttgc ctcgatcgac ggccaggtcc ggcggctgac cagcacgccg accagcgagc
     7441 tggacggc
//
LOCUS       DASQVK010000443         3926 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_379420,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000443 DASQVK010000000
VERSION     DASQVK010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3926)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3926)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3926
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_379420"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..110
                     /locus_tag="VE567_09590"
                     /pseudo
     CDS             1..110
                     /locus_tag="VE567_09590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007681480.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(164..1348)
                     /locus_tag="VE567_09595"
     CDS             complement(164..1348)
                     /locus_tag="VE567_09595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49131.1"
                     /translation="MFQSFFLAGFEGSTGYNKHGQWFDQVVATGHDRTVDEDYCDLAR
                     LGIHAARETVRWPLVDLGAGRYDFASLAPFAEAARRHGVTVIWDLFHYGYPRGLDLFG
                     EDFPRRFADYCHAVGRYLAARTEGTCWFTPVNEPSFMAFAGGEAGLFAPHQTGRGWEL
                     KVALCRAAIAGIDALRDAAPGCRIVNVDPLCHVAVSPDRPHEAEEARDFNERLVFQAW
                     DMLAGRLLPELGGSPDHLDVIGVNYYWTNQWEWRVAPNPDGHVPPLAEDDPRRLPLAP
                     LLRSVWKRYGHELIVTETAHVGDQRGPWLREVAREAEVLLEAGVPLRGVCLYPILGMP
                     EWHAPDVWTPMGLWDPVCHRERLTERLVCGDMLEALIASRHLDTLHRTALANPTPLRA
                     AA"
     gene            complement(1357..2649)
                     /locus_tag="VE567_09600"
     CDS             complement(1357..2649)
                     /locus_tag="VE567_09600"
                     /inference="COORDINATES: protein motif:HMM:NF012457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HYZ49132.1"
                     /translation="MGPLPRRSELARLRAPDAFWWATGIEDTFITAPHPVTGRTLDEY
                     ELTDHYRRWREDLALMAELGVPCARYGVPWHRLQPAPDRWDWRHADEPLERLLELGIA
                     PQVDLVHYGLPGWIEGAYLNPDYPRLVADYAARLAERFRGRIHWYTPLNEPRVTAWYC
                     GRLGWWPPYGRSWRGFVAVMLAVAGGIQATVKALRAVDPEIVAYHVDPTDLYETDDPA
                     LEAEAQQRRDIVFLALDLVAGRVDKRHPLHAWLLAQGAPAATLEALQANAEPPEVIGL
                     NLYPLFTAKRLLRDARGRLRLRMPYTEAGLIDGVVRRYHEHFGVPLMISEAATSGPVA
                     RRLRWLDRSVAEIAALRAEGIPLVGYTWWPMFALVTWAWRQGRRDVSQHLLQMGLWDL
                     SDKLDRIPTPLVEAYRKLAAGGAETIGSLPAIVQSKSV"
     gene            complement(2654..>3926)
                     /locus_tag="VE567_09605"
     CDS             complement(2654..>3926)
                     /locus_tag="VE567_09605"
                     /inference="COORDINATES: protein motif:HMM:NF014850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HYZ49133.1"
                     /translation="VGLVLRLSAKPPQGWRARVRLTGDRPAQTLVDDVCALAHEELRR
                     DLLLDISDAAIRRRRTLLWGPGDPNLIEAEIEILDDRGAVVDRIESYFGLRRVEARDG
                     RFIVNGIPTFLRLVLAQNYWPDSLLAAPSAEALKREVELAKELGFNAVRIHQKIEDPR
                     FLYWCDRLGMMVWGEAANAYVYSDRAAEMLLREWTEALRRDYNHPCIVTWVPLNESWG
                     VPDLDRSETQGHFCRALYNMTKALDPTRPVIGNDGWQHAVGDIFGVHDYAPAGDLLRE
                     RYADRAALARTFREVRPHHHPLLAENVELGDEPIVISEYGGLAFAPGEGQDWFGYGQF
                     ADAEALLARYEELTQALLDSTVIAGICYTQLTDTEQETNGLLTADRTPKLDPARVCAI
                     NNRPSRAVPSEILDALIKQEVERRRRDRGQE"
BASE COUNT          661 a         1278 c         1422 g          565 t
ORIGIN      
        1 caggaccgcc cgcccgcgag acgatcgccg cgctgtgcaa ggacgtgacc gcgaaatgct
       61 atagcggcga catcagccgc aagcgcaagc tgctggacaa gcagaaagaa gacacgaagg
      121 gggctgcgag tgggcttcgt gcgagtcctt gcctgcgcgt ccgtcaggcg gcggcgcgga
      181 ggggggtggg gttggcgagg gcggtgcggt ggagggtgtc gaggtggcgc gacgcgatca
      241 gcgcttccag catgtcgccg cagaccaggc gctcggtgag gcgctcgcgg tggcagaccg
      301 ggtcccacag gcccatcggc gtccacacgt ccggcgcgtg ccattcgggc atgccgagga
      361 tcgggtagag gcagacgccg cgcaacggca cgccggcttc cagcaggacc tccgcctcgc
      421 gcgcgacttc gcggagccag gggccgcgct ggtcccccac atgcgcggtt tcggtgacga
      481 tcagctcatg gccgtagcgc ttccagacgg agcggagcag cggcgcgagc ggcaggcggc
      541 ggggatcgtc ctcggcaagc ggggggacat ggccatcggg attgggggcg acgcgccatt
      601 cccattggtt ggtccagtaa taattgacgc cgatcacgtc gaggtgatcg ggggagccgc
      661 cgagctccgg cagcaggcgg ccggcgagca tgtcccaggc ctggaagaca aggcgttcgt
      721 tgaagtcgcg cgcttcctcg gcctcgtgcg ggcgatcggg gctgacggcg acgtggcaga
      781 gcgggtcgac attgacgatg cggcagccag gcgcggcgtc gcgcagggca tcgatgccgg
      841 cgatcgcggc gcggcagagc gcgaccttga gctcccagcc gcggccggtc tggtgggggg
      901 cgaacaggcc cgcctcgccg ccggcaaagg ccatgaagct cggctcgttc acgggggtga
      961 accagcaggt cccttcggtg cgggcggcga ggtagcggcc gacggcgtgg caataatcgg
     1021 cgaagcggcg ggggaaatcc tcgccgaaca gatcgaggcc ccgggggtag ccatagtgga
     1081 acaggtccca gatcacggtg acgccgtggc ggcgcgcggc ctccgcgaag ggggcgaggg
     1141 acgcgaagtc gtagcggccg gcaccgaggt cgacgagcgg ccagcgcacc gtctcgcgcg
     1201 cggcgtggat gccgaggcgg gcgagatcgc aatagtcttc gtcgacggtc cggtcgtggc
     1261 cggtggcgac cacctggtcg aaccactgac catgtttgtt gtaaccggtc gagccttcaa
     1321 atccggcgag gaaaaagctc tgaaacattg cgaccctcaa acgcttttac tttgcacgat
     1381 cgccggcaac gagccgatcg tttctgcgcc gcccgccgcc agctttcggt acgcctcaac
     1441 gagcggagtc ggaattcggt ccaatttgtc ggacagatcc cacaggccca tctgcagcag
     1501 atgctgcgaa acgtcgcgcc ggccctgacg ccacgcccag gtgacgaggg cgaacatcgg
     1561 ccaccaggta tagccgacga gcgggatgcc ctcggcgcgc agggcggcga tctcggcgac
     1621 cgagcggtcg agccagcgca ggcggcgcgc gaccggaccc gaggtcgcgg cctcggagat
     1681 catcagcggc acgccgaaat gctcgtgata gcggcggacg acgccgtcga tcagccccgc
     1741 ctccgtgtag ggcatgcgga ggcgcagccg cccgcgggcg tcgcgcagca gccgcttggc
     1801 cgtgaagagg gggtagaggt tgaggccgat gacctccggc ggctcggcat tggcctggag
     1861 cgcctcgagc gtggcggcgg gggcgccctg cgcgaggagc caggcgtgga ggggatggcg
     1921 tttgtcgacc cgccccgcga ccaggtccag cgccaggaaa acgatgtcgc gccgctgctg
     1981 cgcttcggct tccagcgcgg ggtcgtcggt ctcgtaaaga tcggtcggat cgacatgata
     2041 ggcgacgatc tcgggatcga ccgcacgcag cgccttgacc gtcgcctgga tcccgccggc
     2101 gaccgcaagc atcaccgcaa cgaagccgcg ccagctccgg ccataaggcg gccaccagcc
     2161 gagccggccg caataccagg cagtgacgcg cggctcgttc aagggcgtgt accagtggat
     2221 gcggccgcgg aaccgctccg ccagccgcgc ggcatagtcc gcgaccagcc gcggatagtc
     2281 gggattgaga taagcgccct cgatccagcc gggcaggccg taatggacga gatcgacttg
     2341 cggcgcgatg ccaagctcca gcaggcgttc gagcggctcg tcggcgtggc gccagtccca
     2401 gcgatcgggc gcgggctgga ggcggtgcca gggcacgccg tagcgcgcgc aaggcacgcc
     2461 gagttcggcc atcaacgcca gatcctcgcg ccagcggcga taatggtcgg tcagctcata
     2521 ttcgtcgagc gtgcggccgg tgaccggatg cggggcagtg atgaacgtgt cctcgatccc
     2581 tgtcgcccac cagaaggcat cgggcgccct gagccgcgcg agctccgatc gccggggaag
     2641 cggccccacg cgcctattcc tgcccgcgat cgcgtcgccg ccgctccact tcctgcttga
     2701 tcagcgcatc gaggatctcg ctcggcacag cgcgcgaagg gcggttgttg atcgcgcaga
     2761 cccgcgccgg atccagcttg ggcgtgcggt cggcggtgag caggccgttc gtctcctgct
     2821 cggtgtcggt cagttgcgtg tagcaaatgc cggcgatcac ggtggagtcg agcaacgcct
     2881 gggtcagctc ctcatagcgg gcgagcagcg cttcggcgtc ggcgaactgg ccatagccga
     2941 accagtcctg gccctcgccc ggcgcaaagg cgaggccgcc atattcgctg atcacgatcg
     3001 gctcgtcgcc cagctccaca ttttcggcga gcagcggatg atggtgcggc cgcacttcgc
     3061 ggaaggtgcg ggccagcgcc gcgcggtcgg catagcgctc gcgcagcaag tcaccggctg
     3121 gcgcatagtc atgcacgccg aaaatgtcgc ccacggcatg ttgccagccg tcattgccga
     3181 tgacgggccg ggtcggatcg agcgccttgg tcatgttgta gagcgcgcgg cagaaatggc
     3241 cctgggtttc cgaccggtcg agatcgggca ccccccagct ttcgttcaag gggacccagg
     3301 tgacgatgca gggatggtta tagtcgcgcc gcagcgcctc ggtccattcg cgcagcagca
     3361 tttcggccgc acgatccgaa tagacatagg cgttcgccgc ctccccccac accatcatgc
     3421 cgagccggtc gcaccaatag aggaagcgcg ggtcctcgat cttctggtgg atgcggacgg
     3481 cgttgaagcc gagctctttg gccagctcca cctcgcgctt cagcgcttcg gccgagggtg
     3541 cggcgaggag cgagtcgggc cagtaattct gcgcaagcac gagccgcaga aacgtcggga
     3601 tgccgtttac gatgaaacgc ccgtcgcgcg cctcgacccg gcgcaggccg aaatagcttt
     3661 cgatgcgatc gacgaccgcg ccgcgatcgt cgagaatctc gatctcggcc tcgatcagat
     3721 tgggatcgcc cggaccccag agcagagtgc gccggcggcg gatcgcggcg tcgctgatgt
     3781 cgagcagcaa atcgcggcgc agctcctcat gcgccaaggc gcagacatcg tcgaccaagg
     3841 tttgcgccgg ccgatcgccg gtcagccgca cacgcgcacg ccagccctgg ggcggcttgg
     3901 ccgacaggcg caggacgagg ccgacg
//
LOCUS       DASQVK010000444         4261 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_155686,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000444 DASQVK010000000
VERSION     DASQVK010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4261
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155686"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            287..2203
                     /gene="dnaK"
                     /locus_tag="VE567_09610"
     CDS             287..2203
                     /gene="dnaK"
                     /locus_tag="VE567_09610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007015263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HYZ49134.1"
                     /translation="MAKVIGIDLGTTNSCVAVMEGGKPKVIENAEGARTTPSVVAFTK
                     DGERLIGQPAKRQAVTNPDNTIFAVKRLIGRRFDDPVTKKDTELVPYKIVRGPNGDAW
                     VHAGGQDYSPSQVSAFVLQKMKETAESYLGETVTQAVITVPAYFNDAQRQATKDAGQI
                     AGLEVLRIINEPTAAALAYGLEKQDGKTIAVYDLGGGTFDISILEIGDGVFEVKSTNG
                     DTFLGGEDFDAKLVEYLADKFKAKEGMDLRTDRLALQRLKEAAEKAKIELSSAQTTEI
                     NLPFITARMEGGTTTPLHLVETVTRADLERLVQPLIDRSIEPVKKALADAGIKASDID
                     EVVLVGGMTRMPKVRETVKSFFGKEPHTGVNPDEVVAMGAAIQAGVLQGDVKDVLLLD
                     VTPLSLGIETLGGVFTRMIDRNTTIPTKKTQTFSTADDNQQAVTIRVFQGEREMAADN
                     KMLGQFDLIGIPPAPRGVPQIEVTFDIDANGIVNVSARDKGTGKEQQIRIQASGGLSD
                     NDIEQMVRDAERFAEEDKKRRAAAEAKNNAESLIHTTERQLQEHGDKVDSSVKSEIEG
                     ALQAAKDAVESNDADRMTSASQSLAQAAMKLGQAIYEKEQATAASPGAEAPQGGANED
                     VVDAEFSEVDENKG"
     gene            2306..3424
                     /gene="dnaJ"
                     /locus_tag="VE567_09615"
     CDS             2306..3424
                     /gene="dnaJ"
                     /locus_tag="VE567_09615"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HYZ49135.1"
                     /translation="MSTDVDYYELLGVDRSADDAAIKAAYRKLALKYHPDKNGGCKEH
                     EAKFKAVNEAYDCLKDPQKRAAYDRFGKAAFQNGGMGGRGGFQDASGFEGFADIFESI
                     FGMGRQGTRGPQRGADLRYDLEISLEDAFHGKQTEITIDVSTQCGACAGTGAKAGAGV
                     RACNTCGGMGKVRAQQGFFVVERTCPTCHGMGEVIADPCGICHGEGRVDKQKTLSVNI
                     PPGVDEGTRIRLSGEGECGPRGAPCGDLYIFLHVARHPIFEREGTTLYCRAPISFTTA
                     ALGGTIQVPGLDKQAHDIRIPPGIQSGKQLRQRGAGMPVLNDRGKGDLVVQIEVETPT
                     KLTAKQRALLEEFRATETGEECPESRGFFEKLKAALGA"
     gene            3788..4057
                     /locus_tag="VE567_09620"
     CDS             3788..4057
                     /locus_tag="VE567_09620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49136.1"
                     /translation="MQMTLVVAMLLQAAAPAAAQTPIQVAQAQPAKQKANDPNQVICK
                     RKLRAGSLAAFEKRCHTRAEWQRLSDEERENWGELQGSKGSSHGG"
BASE COUNT          859 a         1303 c         1434 g          665 t
ORIGIN      
        1 cgcggaccgg cgagaagcgg acataggcgc ccaccacctg gatgtccttt tccttggtgc
       61 agcccgcaat cgcgagagcg ggaatggcgg cggcgagcat ccaggaacgg ggagacatgg
      121 ccggggcacc tctatcgaca cagtcatcgt aacgctgccg cgtccttagg agggtgctct
      181 ccttgcggca agaacaagcc gccctatatc gccgctagtt gaagccgggt ggccccgttt
      241 cggagcgctc ggatttggga ttgaaggcag gggcataaga ggaaaaatgg ccaaagtcat
      301 cggcatcgat ctcgggacca cgaatagctg cgtggccgtg atggagggcg gcaagcccaa
      361 ggttatcgaa aatgcggaag gcgcacgcac cacgccctcg gtcgtcgctt tcacgaaaga
      421 cggcgagcgg ttgatcggcc agccggccaa acgccaggcc gtcaccaatc cggacaatac
      481 gattttcgcg gtgaagcgcc tgatcggccg ccgcttcgac gatcctgtga ccaagaagga
      541 caccgagctg gtgccctaca agatcgtacg cggcccgaac ggcgacgcgt gggtccatgc
      601 gggtggccaa gactattcgc cgtcgcaggt ctccgccttc gtgctccaga agatgaagga
      661 gacggcggaa tcctatctcg gcgagaccgt cacccaggcc gtcatcaccg tccccgctta
      721 cttcaacgac gcgcagcgcc aggcgaccaa ggacgcaggc cagattgcgg gtctcgaagt
      781 gctccgcatc atcaacgagc cgactgcggc cgcgctcgcc tatggcctcg agaagcagga
      841 cggcaagacg atcgccgtct atgaccttgg cggcggcacg ttcgacatct cgatcctcga
      901 gatcggcgac ggcgtgttcg aggtgaagtc gaccaacggc gacaccttcc tcggcggcga
      961 ggattttgac gccaagctgg tcgaatatct ggccgataag ttcaaggcga aggagggcat
     1021 ggacctccgc accgatcggc tcgcgctgca gcggctgaag gaagccgccg agaaggccaa
     1081 gatcgagttg tcgtcggcgc agacgaccga gatcaacctg cccttcatca ccgcgcgaat
     1141 ggaaggcggc acgaccacgc cgctccacct cgtcgaaacc gtcacccgcg ccgatctcga
     1201 gcggctcgtg cagccgctca tcgaccggtc gatcgagccg gtgaagaagg cgctggccga
     1261 tgccggcatc aaggcgtcgg acattgatga agtggtgctg gtcggcggca tgactcgcat
     1321 gccgaaggtc cgcgagaccg tgaaaagctt tttcggcaag gaaccgcaca ccggtgtcaa
     1381 cccggacgaa gtggtcgcaa tgggcgccgc tatccaggcg ggcgtgctgc agggcgacgt
     1441 gaaggacgtg ctgctgctcg acgtgacgcc gctgtcgctg ggcatcgaga ctttgggcgg
     1501 cgtcttcacc cggatgatcg accgcaacac gacgattccg accaagaaga cgcagacttt
     1561 ctcgactgct gacgacaatc agcaggccgt gacgatccgc gtgttccagg gtgagcgcga
     1621 aatggccgcg gacaacaaga tgctcggcca gttcgacctg atcggcattc cgcctgcgcc
     1681 gcgcggcgtg ccgcagatcg aggtcacgtt cgacatcgac gcgaacggca tcgtcaacgt
     1741 ctctgccagg gacaagggca cgggcaagga acagcagatc cgcatccagg cgtcgggcgg
     1801 tctctccgat aacgacatcg agcagatggt ccgggacgcg gaacgcttcg ccgaggaaga
     1861 caagaagcgg cgtgccgcgg ccgaggcgaa gaacaatgcg gaatcgctga tccacaccac
     1921 cgagcgccag ctccaggagc atggcgacaa ggtagactcg tcggtcaagt ccgagatcga
     1981 gggcgcgctc caggccgcga aggatgcggt cgagagcaac gacgccgatc gcatgacttc
     2041 ggccagccag tcgctcgccc aggcggcgat gaagctcggc caggcgatct acgagaagga
     2101 gcaggccacg gccgcctcac cgggtgcgga ggctccgcaa ggcggcgcca atgaggatgt
     2161 cgtcgatgcc gaattctcgg aagtggacga gaataagggc tgatgctttg aagcgcatct
     2221 cgctgtcgct cggcgcgaac gggaggggta aggaaacccc gttcgcatcg agcggcttcg
     2281 agacacgcca gtgcctgggg tcagcatgag caccgacgtc gattattacg aactgctggg
     2341 cgtcgatcgc agcgccgacg acgcggcgat caaggctgcc tatcgcaagc tcgcgctcaa
     2401 atatcacccg gacaagaatg gcgggtgcaa ggagcatgaa gcgaaattca aggcggtcaa
     2461 cgaagcttat gactgcctga aggacccgca gaagcgcgcg gcctatgacc gtttcggcaa
     2521 ggccgctttc cagaatggcg ggatgggcgg gcgcggcggg ttccaggacg cgagcggctt
     2581 tgaaggcttt gccgatattt tcgagagcat tttcggcatg ggccggcagg gcacgcgcgg
     2641 gccccagcgc ggcgccgatc tgcgctacga tctcgaaatc agcctggaag acgcgttcca
     2701 cggcaagcag accgaaatca cgatcgacgt ttccacccag tgcggcgctt gcgccggcac
     2761 gggcgccaag gcgggcgcgg gcgtgcgcgc ctgcaatacc tgcggcggca tgggcaaggt
     2821 gcgcgcgcag cagggctttt tcgtggtcga gcggacgtgc ccgacctgcc acggcatggg
     2881 cgaagtgatc gccgatccgt gcggcatctg ccatggcgaa ggccgggtcg acaagcagaa
     2941 gacgctgagc gtcaacatcc cgcccggcgt cgacgaaggt acccgcatcc gcctttcggg
     3001 ggaaggcgag tgcggccccc gcggcgcgcc ttgcggcgac ctatacatct tcctgcatgt
     3061 ggcgcggcac ccgatcttcg agcgcgaggg gacgacgctt tattgccgcg ccccgatcag
     3121 cttcacgacc gcggcactgg gcggcacgat ccaggtgccg ggtctcgaca agcaggccca
     3181 cgacatccgg atcccgcccg gcatccagtc cggcaagcaa ctccggcagc gcggcgccgg
     3241 tatgcctgtc cttaatgacc ggggcaaagg cgacctcgtc gtgcagatcg aagtcgagac
     3301 gccgacgaag ctgaccgcga agcagcgggc cttgctggaa gaattccgag ccaccgaaac
     3361 cggcgaggaa tgcccggaga gcaggggctt tttcgaaaaa ttgaaggcgg cgctcggcgc
     3421 ctgatcgccg ggtgacctgc gggcgcccac gcgactgctc cgccagcccg tagctatcaa
     3481 tcagatcgaa gttcattcgc atggtcggcg gcggcgcggc gcaccggatc gtgtgttaag
     3541 ccgagatgcc cgacgggcgt ttgggtgtgg gtagtgccga aggcagccgg cgttgctcgt
     3601 ccgcgatgat cgggccccgg atgggccggt ctgtcgaatc gcagggcaat gcgatcgcag
     3661 ccgtccgcga cgttcattac aaaaactaca ttatggacgg actggcgatc tgatcttgag
     3721 ctgcgggcgc attgtgccgc tgagccttag ccgctattgt caggcacttg ggaggttggg
     3781 aactatggtg cagatgacgc tcgttgtggc gatgcttctt caggcggctg ctccggctgc
     3841 cgctcaaacg ccgattcaag tcgctcaggc tcaaccggcc aagcaaaagg cgaatgaccc
     3901 taaccaggtg atctgtaagc gcaagctgag ggccggctcc ctcgccgctt ttgaaaagcg
     3961 ctgccacacg agagcggaat ggcagcgcct ctcggacgag gagcgggaga attggggcga
     4021 gctgcagggc tccaaaggca gcagccacgg cggctgaatg ccgctggtca gctagcgctc
     4081 gatccagctc gatagcatag ccctgttcaa ggtgccgggc gaaccgctcg gggtcgaaca
     4141 gcggagggat gtggcggttg gccgccaggc gcgcgcggag atcgtcgacc tagcggcgat
     4201 accgcgccag ttcgatcgcg agtgccgcat agtcccggtc gtcggtcaca tgcacgcgct
     4261 g
//
LOCUS       DASQVK010000445         3197 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_345955,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000445 DASQVK010000000
VERSION     DASQVK010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3197
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345955"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..282
                     /locus_tag="VE567_09625"
     CDS             <1..282
                     /locus_tag="VE567_09625"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460156.1"
                     /note="Catalyzes first step of the de novo purine
                     nucleotide biosynthetic pathway; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HYZ49137.1"
                     /translation="TRHSYFYGVDTPERAKLLAAKLDVPGMSDYIHADSLAFVSIEGL
                     YRALGHDRRAEVRPQHCDACFTGDYPTTLTDQDELAPADQLSLLAERVV"
     gene            367..1086
                     /locus_tag="VE567_09630"
     CDS             367..1086
                     /locus_tag="VE567_09630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYZ49138.1"
                     /translation="MTDTPLKDQLALVTGASRGIGAATAEALAKAGAHVILTARTAKD
                     LEAVEERIHEAGGSATIAPLDLTDAEAIARLATAVAERWDKLDILVLNAAMLGTLAPV
                     PAIDPKEFAQLLTLNIAAQQALIAAFDPLLRRASPGRLIAVTSSVGAQPRAYWGAYGA
                     SKAALDTLVAAYGEEQRNLGKVKVAIVDPGATRTKMREKAFPGEDPTTVKPPEAVGER
                     IVALLSQGFETGHRERVQGSA"
     gene            1157..2056
                     /locus_tag="VE567_09635"
     CDS             1157..2056
                     /locus_tag="VE567_09635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006965613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase"
                     /protein_id="HYZ49139.1"
                     /translation="MLHLVHHPGYLTPPPPSGAFPASKYQLLIEALDAFDLRQARHLP
                     EPMPKEWIEAVHHPAYVAEVLAAAVPPEKERRIGFPVTPLLSMRAQLTPGGTWLAAKL
                     ALEHGFAANTAGGSHHALHETGAGYCVFNDLAIAANRLVCEGAVRRILIVDLDVHQGD
                     GTATLLAGRADIATYSAHAERNFPTRKARSTLDVPLPDGTGDGAYFDALAATLPALID
                     RVRPELILYQAGVDPHVEDRLGRLALTDSGLAARDRFVADLARRHGIAVASTPGGGYG
                     ADKAVIARRHAATIETLYRALIA"
     gene            2331..>3197
                     /locus_tag="VE567_09640"
     CDS             2331..>3197
                     /locus_tag="VE567_09640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007688820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HYZ49140.1"
                     /translation="MATAAFPSRSDFEALLNETLGGANEGFEGRVVKGTVTAIENDMA
                     VIDVGLKSEGRVPLREFAAPGQKAELNVGDEVEVFVDRVENVNGEAMLSRDRARREAA
                     WDKLEHEFAAGNRVDGVIFGRVKGGFTVDLGGAVAFLPGSQVDIRPVRDVQPLMDIPQ
                     PFQILKMDRRRGNIVVSRRAILEETRAEQRSGLIQSLHEGQVVDGVVKNITDYGAFVE
                     LEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVDVAVLEVDEEKRRISLGLKQAQANP
                     WSAFAEKHPVGTE"
BASE COUNT          529 a         1093 c         1058 g          517 t
ORIGIN      
        1 acccggcaca gctacttcta cggcgtcgac acgcccgagc gcgcgaagct gctggcggcg
       61 aagctcgatg tgcccggcat gtccgattac atccacgccg acagccttgc cttcgtgtcg
      121 atcgaggggc tgtaccgtgc gctcggccat gatcgccgcg cggaagtccg cccgcagcat
      181 tgcgacgcct gcttcaccgg cgactatccg acgacgctca ccgaccagga cgagctcgcg
      241 cccgcggacc agctttcgct gctggccgag cgggtggtct agacttttca gcgccgttcg
      301 tttggagcga agccatgaca cggcggccgc cgtgtctcga cttcgctcga cacgaacgga
      361 tgctggatga ccgatacacc cttgaaagac caactcgccc ttgtgaccgg cgccagccgg
      421 ggcatcggtg cggccacggc cgaggcgctg gcgaaggcag gcgcgcacgt catcctcacc
      481 gcgcgcacgg cgaaggatct ggaagcggtc gaggagcgca ttcacgaggc gggcggcagc
      541 gcgacgatcg cgccgctcga cctcactgac gccgaggcca ttgcccgcct cgccacggcg
      601 gtggccgaac gctgggacaa gcttgacata ctggtgctca acgccgcgat gctgggcacg
      661 ctggccccgg tgccggcgat cgatcccaag gaattcgccc agcttttgac gctgaacatc
      721 gctgcccagc aggcactgat tgcggcgttc gatcccctcc tccgtcgcgc gagcccgggc
      781 cgactgatcg cggtcacttc cagcgtcggc gcgcagccgc gtgcctattg gggcgcctat
      841 ggggcgtcca aggccgcgct cgacacgctc gtcgccgctt atggcgagga acagcgcaat
      901 ctcggcaaag tgaaagtcgc aatcgtcgat cccggcgcta cgcgcaccaa gatgcgcgaa
      961 aaggctttcc ccggtgaaga cccgaccacg gtcaagccgc ccgaagccgt gggtgagcgg
     1021 atcgtagcgc tgctgtctca agggttcgag acgggccatc gggagagagt gcagggctca
     1081 gcctgagacg tggcggcgaa cgaagatcgc ctttcgacca tagctgccgc tacagaccgg
     1141 acgcgagcgc tcctgaatgc tccacctcgt ccaccacccg ggctatctca cccctcctcc
     1201 accctcgggc gcgtttccgg ccagcaaata tcagctgctg atcgaggcgc tggacgcgtt
     1261 cgatctccgc caggcgcgcc atctcccgga gccgatgccc aaagagtgga tcgaggcggt
     1321 gcatcatccg gcctatgtcg ccgaagtgct tgccgcggcg gtgccgccgg agaaggagcg
     1381 gcggatcggc tttccggtga cgccgttgct gtcgatgcgc gcgcagttga cgcccggggg
     1441 aacctggctg gcggcaaagc tggcgctgga gcacggcttc gcggcgaata cggcgggcgg
     1501 cagccatcat gccctgcacg agaccggggc cggctattgc gtgttcaacg acctggcgat
     1561 cgccgccaac cggctggtct gcgaaggcgc cgtgcggcgc atcctcattg tcgatcttga
     1621 cgtgcatcaa ggcgacggca ccgcgacgct gctcgccggg cgcgcggaca tcgccactta
     1681 ttcggctcat gccgagcgca atttccctac gcgcaaggcg cgctccacgc tcgacgtgcc
     1741 acttcccgac ggcacaggcg atggggccta tttcgacgcg cttgccgcca cgctgccggc
     1801 gcttatcgac cgggtgagac ccgagctgat cctctaccag gccggcgtgg acccgcatgt
     1861 ggaggaccgg ctgggccgtc tcgcgctgac cgactccggc cttgccgcgc gcgaccgttt
     1921 cgtggcggac ctggcgcggc ggcatggcat cgcggtcgcc agcacgccgg gcggcggcta
     1981 cggcgcggac aaggcagtga ttgcccggcg ccacgccgct acgatcgaga cgctctatcg
     2041 cgccctgatc gcttgaatcc gccgctcacc ttgctttcga gcctccgctc gactatgtgc
     2101 gcgcggtccg gcggggctca tagtcctcgc ggaggaaggc gcggcggtgc atccggcgcg
     2161 ccccttggca tttcaagcgt cagcctctgc gattcctgcg agcctcgatg gatgcttctc
     2221 cggcatgggg ccggcgaggc ggattggcct tagtctcgcg ctgcgcgagg ccagaccgcc
     2281 ggaaccaacc ggctggccag caacgatctg agtaggaaga ctcctgtttt atggccactg
     2341 cggcttttcc ctcgcgctcc gatttcgaag cgcttctcaa cgaaactctg ggcggcgcga
     2401 acgaaggctt tgaaggccgc gtcgtcaagg gcaccgtcac cgcgatcgag aacgacatgg
     2461 cggtgatcga tgtcggcctg aagtcggaag gccgcgtgcc gctgcgcgaa ttcgccgcgc
     2521 cgggccagaa ggccgagctg aacgtcggcg acgaagtcga agtgttcgtc gatcgcgtcg
     2581 agaatgtgaa cggcgaagcg atgctgtcgc gcgaccgcgc gcgccgcgaa gccgcctggg
     2641 acaagctcga gcatgaattc gccgccggca accgtgtcga tggcgtgatt ttcggccgcg
     2701 tgaagggcgg cttcaccgtc gacctcggcg gcgccgtggc cttccttccg ggcagccagg
     2761 tcgacatccg tccggtccgc gacgtccagc cgctgatgga catcccgcag ccgtttcaga
     2821 tcctcaagat ggaccgccgt cgcggcaaca tcgtcgtgtc gcgccgcgcc atcctcgaag
     2881 agacccgcgc cgagcagcgc agcggcctca tccagtccct ccatgagggc caggtggtcg
     2941 acggcgtcgt caagaacatc accgattacg gcgccttcgt ggagctggag ccggggatcg
     3001 agggcctgat ccacgtctcg gagatgtcct ggacgaagaa gaacgtccat ccgggcaaga
     3061 tcgtctccac ctcgcaggag gtggacgtcg ccgtgctcga ggtcgacgag gagaagcgcc
     3121 gcatcagcct cggcctcaag caggcccagg ccaatccctg gtcggccttc gccgagaagc
     3181 atccggtcgg caccgag
//
LOCUS       DASQVK010000446         2598 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_30361, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000446 DASQVK010000000
VERSION     DASQVK010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2598
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30361"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..341
                     /locus_tag="VE567_09645"
     CDS             <1..341
                     /locus_tag="VE567_09645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010186766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HYZ49141.1"
                     /translation="RPALGAQIVMLLTLMITSKGIAGVPRASLVVIAATLSQFNIPEA
                     GLLLILAVDHFLDMGRSATNVVGNAVASAVVARWEGGLEPAAPPELEPPHAPSHRAGQ
                     PLAEDWGAQA"
     gene            complement(332..958)
                     /locus_tag="VE567_09650"
     CDS             complement(332..958)
                     /locus_tag="VE567_09650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010217441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HYZ49142.1"
                     /translation="MPIIVHHLESSRSQRILWMLEELGLAYEVKRYERDPKTMLAPPE
                     LRRVHPLGKSPVLQDGDTIVAETGAIVEYLVQKADGKLGPPAHREAILRYRFFLHYAE
                     GSLMPPLLVKLVLGRIPLFGGAAQKRFQPMIDVHLDYLERELAGREWFVGDELTAADI
                     MMSFPLEAARARAGLGESRPNLIAWLGRIHARRAYARALERGGPYAYA"
     gene            complement(1218..2294)
                     /gene="recA"
                     /locus_tag="VE567_09655"
     CDS             complement(1218..2294)
                     /gene="recA"
                     /locus_tag="VE567_09655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HYZ49143.1"
                     /translation="MTAQLKIVDSDKTGNMDRQKALEAALAQIDRAFGKGSAMKLGSR
                     EAMQIEAISSGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTA
                     AFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEIADTLVRSNAIDVLVVDSVAA
                     LVPRAEIEGEMGDSHVGLQARLMSQALRKLTGSISRSRCIVIFINQVRMKIGVMYGNP
                     ETTTGGNALKFYASVRLDIRRTGQIKDRDDIVGNTTRVKVVKNKVSPPFKQVEFDIMY
                     GEGISKVGEILDLGVKAGVVEKSGAWFSYDSIRIGQGRENAKQYLRDNPDVAVRLEKA
                     IRGKTGDVAEALMVSPGADDVDEM"
     gene            complement(2403..>2598)
                     /locus_tag="VE567_09660"
     CDS             complement(2403..>2598)
                     /locus_tag="VE567_09660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015460293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYZ49144.1"
                     /translation="VNLRGGEASWPVADALRERGRPFVLATGGGHEMVPPRHADAPVL
                     IKPYTLDAIRQAFESLLGVS"
BASE COUNT          427 a          841 c          864 g          466 t
ORIGIN      
        1 atcgacctgc cctcggcgcg caaatcgtga tgctgctgac gctgatgatc acgtccaagg
       61 gcatcgccgg ggtgccgcgc gcgagcctcg tcgtgatcgc ggcgaccttg tcgcaattca
      121 acatccccga ggcggggcta ctactgatcc ttgcggtcga ccatttcctg gacatgggac
      181 gctcggcgac caatgtggtc ggcaatgcag tggcgagcgc ggtcgtcgcg cggtgggaag
      241 gcgggctgga accggccgcc ccgccggaac tcgagccgcc gcatgcgccg tcgcaccggg
      301 cgggccagcc gctggcggag gactggggcg ctcaggcgta agcgtacggc ccaccccgct
      361 caagcgcgcg ggcataggct cgtcgggcgt ggatgcggcc cagccaggcg atcagattgg
      421 ggcgcgactc gccgaggccg gcgcgagcgc gagcggcctc cagcgggaag ctcatcatga
      481 tatcggcggc agtcagttcg tcgcccacga accattcccg cccggccagc tctcgctcca
      541 gatagtccag atgcacgtcg atcatgggct ggaagcgctt ttgcgcggcc ccgccgaaga
      601 ggggaatgcg gccgagcacc agcttcacga gcagcggcgg catcagcgag ccttcggcat
      661 aatggaggaa aaagcggtag cgcaagatcg cttcgcggtg cgctggcggc cccagctttc
      721 cgtcggcctt ctggaccaga tattcgacga tcgcgcccgt ttcggccacg atcgtgtcgc
      781 cgtcctgcag gaccggcgac ttgccgagcg gatggacgcg gcgaagctcc ggcggcgcaa
      841 gcatggtttt cgggtcacgc tcgtagcgct tcacctcata ggcaagaccg agttcctcca
      901 gcatccagag gatgcgctgc gagcggctgc tctcgagatg gtggacgatg atcggcatgg
      961 tggcgctccg cggagtgggg cgccttttct atcgccattc ccgcgctggc gggaattggc
     1021 gatttggtca cgcgaagacg cgaaaaggtc gggagccgtt tcttcgcggc ttcgcgtgat
     1081 cggattttgt tcgcgcaaag gcgtagagat tcagagcgcg cgcgccggcc ggtgcttatc
     1141 cccgccatcg gagatgccgt gatgaggggc cggtcgcgcg gcctttccgt ctctctgccc
     1201 tccgcgcgga cggaaagtca catctcgtcg acgtcgtcgg cgccggggct gaccatcagg
     1261 gcttcggcga cgtcgccggt cttgccgcgg atcgcctttt cgaggcgaac ggcgacgtcg
     1321 ggattgtcgc gcagatattg cttggcgttc tcgcggccct ggccgatgcg gatcgaatca
     1381 tagctgaacc atgcgcccga cttctcgacc accccggcct tcacgccgag atcgaggatc
     1441 tcgccgacct tcgaaatgcc ctcgccgtac atgatgtcga actcgacctg cttgaacggc
     1501 ggcgagacct tgttcttgac cactttcacg cgcgttgtgt tgccgacgat atcgtcgcga
     1561 tccttgatct ggccggtgcg gcggatgtcg aggcgaacgg aggcgtagaa tttaagcgca
     1621 ttgccgcccg tcgtcgtctc cggattgccg tacattacgc cgatcttcat ccgcacctgg
     1681 ttgatgaaga tgacgatgca gcgcgagcgg ctgatcgagc cggtgagctt cctgagcgcc
     1741 tggctcatca gccgcgcctg aagcccgaca tggctgtcgc ccatctcgcc ctcgatctcg
     1801 gcgcgcggga cgagagcggc gaccgagtcg accaccagca cgtcgatcgc gttggagcgc
     1861 accagcgtat cggcgatctc cagcgcctgt tcgccggtgt cgggctgaga gacgatcagc
     1921 tcgtcgatat cgacgcccag cttcttggca tagacgggat cgagcgcgtg ctcggcgtcg
     1981 acgaacgccg ccgtgccgcc cgccttctgc gcctcggcaa tcgcgtggag tgcgagcgtg
     2041 gtcttgcccg aactttccgg gccgtaaatc tcgacgatcc gcccgcgcgg caggccgccg
     2101 atgccgagcg cgatgtcgag gcccagcgag cccgacgaga tcgcctcgat ctgcattgcc
     2161 tcgcggctgc ccagcttcat cgccgaaccc ttgccgaacg cgcggtcgat ctgcgccagc
     2221 gccgcttcga gagccttttg cctgtccata ttccccgtct tgtcggaatc gacgatcttg
     2281 agctgcgccg tcatgcaatt gactccctaa gcggaacgcg aaccgcgttc aacgaggagg
     2341 tgtgtatcgc atttgttcca aaagaacaag agtggaacga aatcagcttc ggcggcgtgg
     2401 acctagctga cgccgagaag cgattcgaac gcctggcgaa tggcgtcgag cgtatagggc
     2461 ttgatgagaa ccggcgcatc ggcatgccgc ggcggcacca tttcatggcc gccgccggtc
     2521 gcgaggacga aggggcggcc gcgctcgcgc agcgcgtcag cgacgggcca ggacgcctcg
     2581 ccgccgcgca gattgacg
//
LOCUS       DASQVK010000447         2252 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_409044,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000447 DASQVK010000000
VERSION     DASQVK010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2252)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2252
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_409044"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..924)
                     /locus_tag="VE567_09665"
     CDS             complement(<1..924)
                     /locus_tag="VE567_09665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015457064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate/amino acid:cation symporter"
                     /protein_id="HYZ49145.1"
                     /translation="MAKRLTYYILAGLVLGIVAGWVLNASIGDAAQLKTIAGYISIVT
                     TVFLHLIKMIIAPLVFGTLVVGIAHMGDTAALGRVGVKSVGWFLAASLMSLTVGLILS
                     HILQPGAALNLPLPPANASSGIDRGAFDVANIVTHIFPTSIIQAMAENEILQIIVFAI
                     FFGVAITAVGEKAAPLVRAAESLVAVMLQVTDYVMRFAPFAVFAAVTATLAEQGPGVI
                     GKLAYFMGSVYLGLILLWALLGLLAFLCIGRRAGALFRYIREPILLAFSTASSEAAFP
                     RTLEALDRFGVPPRISSFVLPLGYSFNLDGSM"
     gene            1021..>2252
                     /locus_tag="VE567_09670"
     CDS             1021..>2252
                     /locus_tag="VE567_09670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004207683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro peptidase family protein"
                     /protein_id="HYZ49146.1"
                     /translation="MDRRFLLKSAGLIGLSALLPSVALAAEIDTSDLKPMTGDVVPIG
                     RAERLRRLALAQDLMRRNNLAAVLIEPGSSLDYFTGVRWHRSERLTAAVIPASGEPLI
                     VTPFFERPSVEETLGVPAELRVWQEDESPVALIAAWLKERRLDRGRIGVEETVRFFAS
                     DGLARLLPAAQIVSANPVVRGCRMHKTPAEIALMQKATDVTIAAYRWTVPRIREGMTP
                     GQIGAIMNAATEKLGGSPEFALVLLGEAAAYPHGSGQPQQVREGEVVLMDCGCTVEGY
                     QSDISRTFVPGRAPDAVRRVWDMVAEGQRVAIRAARLGTPAGQVDDAVRAFYEREGYG
                     PGYKLPGLSHRTGHGIGMDGHEPVNLVHGETTPLEIGMCFSDEPGLYLPGRFGVRLED
                     CFHMTPTGPKFFSEPPASL"
BASE COUNT          403 a          751 c          751 g          347 t
ORIGIN      
        1 catcgagccg tcgagattga acgaatagcc caaaggcagc acgaagctcg agattcgtgg
       61 cggcacgccg aaacggtcga gcgcctccag cgtgcgcggg aacgcggcct ctgacgacgc
      121 cgtcgagaaa gcgagcagga tcggctcccg gatatagcgg aacagcgccc ccgcgcgtcg
      181 cccgatgcac aggaaggcga gcagccccag cagggcccag agcaggatca gccccagata
      241 gacgctgccc atgaaatagg cgagcttgcc gatcacgccc gggccttgtt cggccaatgt
      301 cgccgtcacc gccgcgaaaa ccgcaaacgg cgcgaaccgc atcacataat cggtcacctg
      361 cagcatcacg gccaccaggc tctccgccgc gcgcaccagc ggcgccgctt tctcgcccac
      421 cgccgtgatc gccacgccga agaagatcgc gaagacgatg atctgcagaa tctcgttttc
      481 cgccatcgcc tggatgatcg aggtcgggaa aatatgcgtg acgatgttgg cgacgtcgaa
      541 ggcgccacgg tcgatgccgc tgcttgcatt cgccggcggc aggggcaggt tgagcgcggc
      601 gcccggctgc aggatgtgtg agaggatgag gccgacggtc agcgacatga ggctcgccgc
      661 caggaaccag ccaaccgatt tcacgcccac gcggcccagc gccgccgtgt ctcccatgtg
      721 cgcgatgccc acgaccaagg tgccgaacac caagggcgcg atgatcatct tgatgaggtg
      781 gaggaaaacg gtggtgacga tcgaaatata gcccgcgatc gtcttcagct gcgccgcatc
      841 gccgatgctc gcgttcagca cccagccagc gacgatgccg agcacaaggc cggcaaggat
      901 gtaataggtc aggcgtttgg ccacgaagcg ctcccccgga tcaacgcccg tgtgaaggcg
      961 ataagtcagg cgcggtcaag ctgcctcgac ttcgctcgcg atggacggct aggatcgggc
     1021 atggaccgcc gcttcctgct caaatccgcc ggcctgatcg gcctttccgc cctgcttccg
     1081 tccgtcgcgc tcgccgccga gatcgatacg tcggacctga agccgatgac cggcgatgtc
     1141 gtgccgatcg gccgcgcgga acggttgcgg cggctcgccc tggcgcagga cctgatgcgc
     1201 cggaacaacc tcgccgcagt gctgatcgag ccgggctcgt cgctcgacta tttcaccggc
     1261 gtgcgctggc atcgcagcga gcggctgacg gcggcagtga ttcccgcctc gggcgagccg
     1321 ctgatcgtca cgcctttctt cgagcggccc tcggtcgagg agacgctcgg cgtgcccgca
     1381 gaactccggg tctggcagga ggacgaaagc ccggtcgcgc tgatcgccgc ctggctcaag
     1441 gaacgccggc tcgatcgcgg ccggatcggg gtcgaggaaa cggtgcgctt ctttgcgagc
     1501 gacggcctcg cgcgtctgct tcccgcggcg cagatcgtgt ccgccaatcc ggtcgtgcgc
     1561 ggttgccgca tgcacaagac gccggccgag attgcgctga tgcaaaaggc gacggacgtg
     1621 acgatcgccg cctatcgctg gacggtgccg cgcatccgcg aaggcatgac gccggggcag
     1681 atcggcgcga tcatgaacgc cgcgaccgaa aagctgggcg gaagccccga attcgcactt
     1741 gttctgctgg gcgaggcggc ggcctatccg cacggttcgg gccagccgca gcaggtccgt
     1801 gaaggcgaag tggtgcttat ggactgcggc tgcacggtcg aaggctatca gtcggacatc
     1861 agccgcacct tcgtgcccgg ccgcgcgcct gatgccgtcc gccgcgtctg ggatatggtt
     1921 gccgagggcc agcgggtcgc gatccgcgct gcccggctgg ggacgccggc gggccaggtc
     1981 gacgatgccg tccgcgcctt ttacgagcgc gaaggctatg gccccggcta caagctgcca
     2041 ggcctgtcgc atcgcacggg ccacggcatc ggcatggacg ggcatgagcc ggtcaatctg
     2101 gtccacggcg aaaccacgcc gctcgaaatc gggatgtgct tctcggatga gccgggtctt
     2161 tacctgcccg gccgattcgg cgtgcggctg gaggattgct tccacatgac gcctaccggc
     2221 ccaaaattct tctccgaacc gccggccagc ct
//
LOCUS       DASQVK010000448         6835 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_219454,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000448 DASQVK010000000
VERSION     DASQVK010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 6835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6835
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219454"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..397
                     /gene="ispH"
                     /locus_tag="VE567_09675"
                     /gene_synonym="lytB"
     CDS             <1..397
                     /gene="ispH"
                     /locus_tag="VE567_09675"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007685548.1"
                     /note="catalyzes the conversion of
                     1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into
                     isopentenyl diphosphate (IPP) and dimethylallyl
                     diphosphate (DMAPP); functions in the nonmevalonate
                     isoprenoid biosynthesis pathway; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HYZ49147.1"
                     /translation="LRRRFPTIQGPRGEDICYATSNRQAAVKAIAPLCDAVLVIGAPN
                     SSNSLRLVEAAESAGARAMLVQRGADVEFGWLANVRTLGLTAGASAPELLVREVVDKL
                     AERYAIEEEQVETARESMIFKLPRSLQTA"
     gene            complement(366..2288)
                     /locus_tag="VE567_09680"
     CDS             complement(366..2288)
                     /locus_tag="VE567_09680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HYZ49148.1"
                     /translation="MADFGTLSSIPPDERFQLLISAVTDYAIYMLDAEGRIATWNPGA
                     RRFKGYEPEEIIGEHFSRFFTSEDLAARLPARILETAAREGRFESEGWRVRKDGQRIW
                     VHVVVDPIWAPDGTLIGYAKITRDITERKAAERALFESEQRFRLLVEGVSDYAIYLLD
                     REGYVTNWNAGAEAIKGYKADEVVGQHFSLFYTEQDRARGEPERTLDVALGEGKFEGE
                     VLRRRKNGEHFWANVVIDPIYDESGTHIGFAKITRDITDRKRAEEELEQTRIALAQSQ
                     KLQALGELTGGIAHDFNNLMTVIRGSAELLQRGDLTEERQQKYLEAIVSTADRAATLT
                     DHLLAFSRRQPLKPQVLDLSLRLDAFAEMLTRTLGSLIEVRLELAPNLWRVEADPTQL
                     ETALLNAAINARDAMPDGGRLTIGTENCEDERLVSIAVTDTGSGMSADVIARAFEPFF
                     TTKPVGKGTGLGLSQIHGFAAQTGGRAEIESVEGQGTTIRLLLPSTDKPLSPREGERH
                     DVDLPPGLKVLLVEDNEQVSEFARHLLEDLGCDVISAASGEDALEKLDGARSDIVFSD
                     IVMPGLSGMELAQRIRERYPHLPVVLASGYSEDMVKVGPGAFELVRKPYGRGDLAEAF
                     ARAIGAIRQSEETAAA"
     gene            complement(2393..3691)
                     /locus_tag="VE567_09685"
     CDS             complement(2393..3691)
                     /locus_tag="VE567_09685"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015456996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HYZ49149.1"
                     /translation="MTKFTDLGLVEPILKALSAKGYNDPTPIQAQAIPPLIEGRDLCG
                     IAQTGTGKTAAFALPSLDYFARHPKPRPLQGCRMLVLSPTRELAAQIAQSFRDYGRFL
                     RLSVETVFGGVPIGRQVNKLRGGVDILVATPGRLLDLIDQRALSLRDVEIFVLDEADQ
                     MLDLGFIHALKRIDALLPKKRQSLFFSATMPKAIAELGDRFLTDPVKVAVTPVASTAE
                     RVRQFATFVNQAEKQALLTLTLKAEPIDRALVFTRTKHGADKVVRGLQAAGIGCAAIH
                     GNKSQPQRTQALQAFRSGEIRVLVATDIAARGIDVSGVSHVFNYELPNVPEQYVHRIG
                     RTARAGRDGIAISFVDGEERQWLKQIERLTRVRLEPVPLPADFDKAKATLPKPVQAKP
                     TAQRRHEEQRARPNGERRPFPPRRKSGVGAHKSAVTRGGR"
     gene            4016..4912
                     /locus_tag="VE567_09690"
     CDS             4016..4912
                     /locus_tag="VE567_09690"
                     /inference="COORDINATES: protein motif:HMM:NF015585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialate O-acetylesterase"
                     /protein_id="HYZ49150.1"
                     /translation="MDRARYSMPATRRPIARLSVIAALLVASACGGAFAMLWAFRNPV
                     THAWLVSRGVLERRGLSLDNEQENPVAIACPKHAQVVLIAGQSNAASHGESKGKFTPN
                     VVNYYQGKCYAARDPLLGATGRNGSVWSRLAWRGPVVLAPVAIGQTRLSSWAPGGRLW
                     PRITESIDELESLGLPVNYVIWHQGEADAEEATDPVVYRQALERLIRSIKARAKTATV
                     IVSPGTYCLGLSSPAIVAAQRAGARDAGALIGPETDLLGSAYRHDGCHFNNAGLEAVA
                     RMWGRYAGVLPIAPKTPSAPAA"
     gene            5000..6301
                     /locus_tag="VE567_09695"
     CDS             5000..6301
                     /locus_tag="VE567_09695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012050896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYZ49151.1"
                     /translation="MPLKSLALALLLAAAASANAALTPPERKIAATVDAEYEQSVALL
                     EKLVNQNSGSHNIEGVTKVGEMMRAELEPLGFQVQWIPMAEVKRAGHIVAVHKGNGRG
                     KRMLLIGHLDTVFEKDSPFQRFVRKGDKAEGPGAGDDKGGMVVIVAALRAMQAAGTLK
                     NADIEVVLTGDEEDSGEPHEISRRDLVAAGKRADVALDFEGLVVMDGQDWGSIARRSS
                     ISWTLKVAAKSGHSSGIFTPAAGEGAIYAASRILAAFRDELREPNLTYNVGLIAGGTQ
                     AALDAGQIHATAAGKSNIIPATTLARGDIRTLSDEQTDRVEARMKAIVARAYPGATAE
                     ISFDPGYPAMAPTEGNRALLKRLNAINADLGLKPMPELDPLKRGAGDIAFVAKDVDGL
                     VGLGTDSDGDHAPGETVDLDSIRRQAKRAAILMTRLSRENR"
     gene            6409..>6835
                     /locus_tag="VE567_09700"
     CDS             6409..>6835
                     /locus_tag="VE567_09700"
                     /inference="COORDINATES: protein motif:HMM:NF020909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1993 domain-containing protein"
                     /protein_id="HYZ49152.1"
                     /translation="MMTFSLYDASVPLFVTSLSNMRAWLDKAASEKPESELLEARLAP
                     DMRPLPAQYQMASDSAKNAIGRLAGIAAPSMPDTEASFAELRERCDKTIAFVRSVDPS
                     VIANAVDRGVELKFPNGSGYRFKGSDYLTGFALPNFFFHV"
BASE COUNT         1177 a         2272 c         2257 g         1129 t
ORIGIN      
        1 gcttcgccgg cgtttcccga ccattcaggg accgcgcggc gaggatattt gctacgctac
       61 ctccaaccgc caggcggcgg tgaaggcgat cgccccgctg tgcgacgcgg tgctggtgat
      121 cggcgcgcct aacagctcca attcgctgcg gctggtcgag gcggcggaaa gcgccggtgc
      181 gcgcgcgatg ctcgtccagc gcggcgcgga tgtcgagttc ggctggctgg cgaacgtgcg
      241 gaccttgggc ctgaccgccg gcgcatcggc gcccgaattg ctcgtgcgcg aggtcgtcga
      301 caagctcgcc gagcgctacg ccatcgagga agagcaggtc gagaccgcgc gcgaaagcat
      361 gatcttcaag ctgccgcggt ctcttcagac tgcctgatcg cgccaatcgc gcgcgcaaag
      421 gcttcggcca gatccccccg accatagggc ttgcggacca gctcgaaggc ccccggcccg
      481 accttgacca tgtcttcgct atagccgctc gccagcacga ccggcagatg gggatagcgc
      541 tcgcggatgc gttgggccag ctccatgccg ctcaggccgg gcatgacgat atcggaaaag
      601 acgatgtccg accgcgcgcc gtccagcttt tccagcgcat cctcgccgct ggccgcgctg
      661 atcacgtcac agcccagatc ttcgagcagg tggcgcgcga actcgctcac ttgctcatta
      721 tcctcgacca gcagcacctt gagcccgggt ggcagatcaa cgtcgtgccg ctcgccttcg
      781 cgggggctga gcggcttgtc cgtgctcggc aggagcaggc gaatggtggt gccttgccct
      841 tcgaccgact cgatctccgc ccgcccgccc gtctgggcag caaagccgtg gatttgggag
      901 aggcccaggc ccgtgccctt gcccaccggc ttggtcgtga agaaaggctc gaatgcgcgc
      961 gcgatcacgt cggcggacat gcccgatccg gtgtcggtga ccgcgatcga gaccaatctc
     1021 tcgtcctcgc aattttctgt cccgatcgtc agccggccgc cgtccggcat tgcatcgcgc
     1081 gcattgatcg cggcgttgag cagcgcggtt tcgagctggg tgggatcggc ctcgacgcgc
     1141 caaagatttg gcgcaagctc cagccgcacc tcgatcaggc tgccgagcgt gcgcgtcagc
     1201 atctccgcaa aggcgtcgag ccggaggctc aagtccagca cttggggttt cagcggctgg
     1261 cggcggctga acgcgagcag atgatcggtc agcgtcgcgg cgcggtccgc ggtgctgacg
     1321 atcgcctcga gatatttttg ctggcgctct tcggtcaggt cgccgcgttg cagcagctcg
     1381 gccgagccgc gaatgaccgt catcaggttg ttgaaatcat gcgcgatgcc gccggtcaac
     1441 tcgcccaggg cctgcagctt ttgcgactgg gcgagcgcga tgcgcgtctg ctccagctct
     1501 tcctcggcgc gcttgcggtc ggtgatgtct cgcgtgatct tggcaaagcc gatatgcgtg
     1561 cccgactcgt cgtagatcgg atcgatcaca acattcgccc agaaatgctc gccatttttc
     1621 cgccggcgca gcacttcccc ttcgaatttg ccctcgccca aggcaacgtc gagcgtccgc
     1681 tccggctcgc cgcgggcgcg gtcctgctcg gtatagaaca gcgagaaatg ctggccgacg
     1741 acctcatcgg ccttatagcc cttgatcgcc tcagcgcccg cgttccagtt ggtgacatag
     1801 ccctccctgt cgaggaggta gatggcgtaa tcgcttaccc cctcgaccag caggcggaag
     1861 cgctgctcgc tttcgaacag cgcgcgctcg gccgcttttc gttcggtgat gtcgcgggtg
     1921 atcttggcat agccgatcag cgtgccgtcc ggcgcccaga tcggatcgac gaccacatgc
     1981 acccagatgc gctggccgtc cttgcggacg cgccagccct cgctttcgaa gcgcccctcg
     2041 cgcgcggcgg tctccagaat tcgtgcaggc agcctcgccg ccaggtcctc gctcgtgaag
     2101 aagcgcgaga aatgctcgcc gataatctcc tcgggctcat agcccttgaa ccggcgcgca
     2161 ccggggttcc aggtcgcgat ccgtccctca gcgtcgagca tgtagatggc gtaatcggtg
     2221 accgcgctga tcagcagctg aaaccgctcg tcggggggga tggacgatag agtgccgaaa
     2281 tcggccattg gaatccctta cccggccggc cttcgcgccc agcctaaccg tccctccgcc
     2341 cctcgtcctc ttaacgtgaa gcagcagccg atcaagagct tgcggcccat gcctagcggc
     2401 cgccgcgggt cactgcgctt ttatgcgcgc cgactccgga cttgcgccgc ggcgggaaag
     2461 ggcgccgctc gccgttcggc cgcgcgcgct gttcttcgtg tcggcgctgc gcggtcggct
     2521 tggcctggac cggcttgggc agcgtggcct tggccttgtc gaaatccgcc ggcagcggca
     2581 ccggctccag ccggacacgc gtgagccgtt cgatctgctt cagccattgg cgctcttcac
     2641 catcgacaaa gctgatcgca atgccgtcgc ggcccgcacg cgcggtgcgg ccgatgcggt
     2701 gaacatattg ctccggcacg ttcggcagct cgtaattgaa cacatggctg acgcccgaaa
     2761 cgtcgatgcc gcgcgcagcg atgtcggtcg cgaccagcac gcggatctcg cccgaacgga
     2821 aggcctgcag cgcctgggtg cgctgcggct gcgacttgtt gccgtggatg gccgcgcagc
     2881 cgatgcccgc cgcctgcagg ccgcgcacca ccttgtccgc accatgtttg gtgcgggtga
     2941 agacaagcgc gcggtcgatc ggctcggcct tgagcgtcag tgtcagcaac gcctgttttt
     3001 cggcctggtt gacgaaggtc gcgaactggc ggacgcgctc cgcggtcgag gcgaccggcg
     3061 tgaccgcgac cttgaccgga tctgtcagga accggtcgcc cagctccgcg atcgccttcg
     3121 gcatcgtcgc cgagaagaaa aggctctgcc gcttcttggg cagcaaggca tcgatgcgct
     3181 ttagcgcatg gatgaagccc aggtcgagca tctggtccgc ttcgtcgagc acgaagatct
     3241 cgacgtcgcg aaggctgagc gcgcgctggt cgatcaggtc cagcaaccgg ccgggcgtgg
     3301 cgacgaggat gtcgacgccg ccgcgcaatt tattgacctg gcgcccgatc ggcacgccgc
     3361 cgaacacggt ttccaccgac aggcgcagga agcggccata atcgcggaag ctctgcgcga
     3421 tctgtgccgc gagctcgcgg gtgggagaga ggaccagcat ccggcagccc tggagcggcc
     3481 ggggctttgg atggcgggca aaataatcga ggctgggcaa cgcgaaggcg gcggtcttgc
     3541 cggtgcccgt ctgggcgatg ccgcacaaat cgcggccctc gatcagcggc ggaattgcct
     3601 gggcctggat cggggttgga tcattatagc ctttggccga aagcgccttg aggatcggct
     3661 caaccaggcc gagatcggtg aatttcgtca tgaatactcg caaagatgcg gatcggcggc
     3721 gcgcaaaatg cgcagccgcg gaaacgcggg gttgattgac aacccgcgtg aaaagggaag
     3781 cccgttgcag gatgcgctaa gcggtgcggc cgggctcgtt tatcgagctg ttcacgctgc
     3841 cggaccatcg gggcaagccc cgtgcgcggc ggccatatgg acctggtcct gccagagcgc
     3901 aagccccttc gggtcccgga cggaggaacg cgcttgtccc gactcgggag ggaaatggca
     3961 gtggcgcact tcaaatcgta acaatcatag aacaagcgcg ctcggagggg gcgacatgga
     4021 ccgagcgcgt tacagcatgc cagcgacacg aaggccgatc gctcggctat cggtgattgc
     4081 ggcgctgctg gtggccagcg cctgcggcgg cgcctttgcc atgctgtggg ccttccgcaa
     4141 tccggtaacg catgcttggc tggtaagcag aggcgttctg gagcgccggg gcctgagcct
     4201 ggacaacgag caagaaaatc cggtcgcgat cgcctgcccg aagcacgccc aggtcgtcct
     4261 catcgccggc cagtcgaacg cggccagcca cggcgaaagc aaaggcaaat tcacgcccaa
     4321 cgtcgtgaac tactatcaag gcaaatgtta cgcggcgcgc gacccgctgc tgggtgcgac
     4381 cggccgcaac ggatcggtct ggtcgcggct ggcctggcgc ggccccgtgg tgctagcgcc
     4441 ggtggcgatc ggccagacgc ggctctcgtc ctgggcgccg ggcgggcgct tgtggccgcg
     4501 catcacggag tcgatcgacg agcttgagtc gctggggctg ccggtcaatt acgtgatctg
     4561 gcaccagggc gaagccgacg ccgaggaagc caccgatcca gtcgtttacc ggcaagcgct
     4621 ggaacggttg atccgctcga tcaaggcgcg cgcgaaaacc gcaacggtga ttgtttcccc
     4681 cggcacctat tgcctcggcc tctcgtctcc cgcgatcgtc gccgcacagc gggcaggagc
     4741 gcgggacgcc ggggccttga tcgggcccga aaccgacctg ctagggtccg cttaccggca
     4801 tgatggctgc cacttcaaca atgcgggact cgaagccgtc gccagaatgt ggggccgata
     4861 cgctggggtg ctgcccatag cgcccaaaac gccgtcggcc cccgccgcct gaacccggat
     4921 cgcgtgcccg ggggcgcaag gtccgaactg gttgacgaag agcggacccc atggctcaaa
     4981 caggcacctc accggagaca tgcccttgaa aagcctagcc ctcgccctgc ttcttgccgc
     5041 cgccgcatcg gcaaacgcgg cgctcacccc gccggagcgc aagatcgccg ccactgtcga
     5101 tgcggaatat gagcagtcgg tggccctgct ggaaaagctc gtcaaccaga actccggctc
     5161 gcacaatatc gaaggcgtga ccaaggtcgg cgagatgatg cgcgccgaac tggagccgct
     5221 cggcttccag gtgcaatgga tcccgatggc cgaggtaaag cgcgccgggc acatcgtcgc
     5281 tgtccacaag ggcaacggcc gcggcaagcg catgctgctg atcggccatc tcgacacggt
     5341 gttcgagaag gattcgccgt tccagcggtt cgtgcgcaag ggcgacaagg ccgaagggcc
     5401 gggtgccggc gacgacaagg gcggcatggt ggtgatcgtc gcggcgctcc gcgcgatgca
     5461 ggcggcgggc acgctcaaga acgccgacat cgaggtcgtg ctgaccggcg acgaagagga
     5521 ttcgggcgaa ccgcacgaaa tctcgcggcg cgacttggtc gcggcgggca agcgcgccga
     5581 tgtcgccctc gatttcgaag ggctggtcgt gatggacggg caggattggg gctcgatcgc
     5641 ccgccgcagc tcgatcagct ggacgctcaa ggtggcggcg aagagcggcc attcgagcgg
     5701 catcttcacg ccggccgccg gcgaaggcgc gatctacgcc gccagccgca tcctcgccgc
     5761 tttccgcgac gagctccgcg agcccaacct cacctacaat gtcgggctga tcgccggcgg
     5821 cacccaggcc gcgctcgacg ccgggcagat ccacgcaacg gctgccggca agtcgaacat
     5881 catcccggca acaacgctgg cccgcggcga catccgcacg ctttcggacg agcagaccga
     5941 ccgagtcgaa gcgcggatga aggcgatcgt cgcccgcgcc tatccgggcg ccacggccga
     6001 gatcagcttc gaccccggct atccggcgat ggccccgacc gaaggcaatc gcgcactcct
     6061 gaagcgcctg aacgcgatca acgccgatct gggcctcaag cccatgcccg aactcgatcc
     6121 gctgaagcgc ggtgccggcg acatcgcctt cgtcgccaag gacgtggacg gcctggtcgg
     6181 cctcggcacc gacagtgacg gcgaccacgc gccgggcgag accgtcgacc ttgacagcat
     6241 ccgccgccag gccaagcgcg ccgcaatcct gatgacgcgg ctgagccggg agaaccgcta
     6301 aggacgccgc ctcgtttgga gccttgaccc aaccggctgg acgcgggcgc gttgcaggga
     6361 tcggcctccc gatccatagg cagcgagcaa tcacgccatg gagagccgat gatgaccttc
     6421 agcctctacg atgcttccgt tcccttgttc gtcacttccc tcagcaacat gcgcgcgtgg
     6481 ctcgacaagg ccgcgtcgga aaagccggaa agcgaattgc tggaggcgcg cctggcgccg
     6541 gacatgcggc cgctgccggc gcaatatcag atggcgtcag attccgcgaa gaacgcgatc
     6601 ggacggctcg ccgggatcgc ggcgccgtcg atgccggaca cagaggcgag cttcgccgaa
     6661 ctcagggagc ggtgcgacaa gaccatcgca ttcgttcgca gcgtggatcc gtccgtgata
     6721 gcgaacgccg tggaccgtgg cgtcgagctg aaattcccca acggatccgg ctatcgcttc
     6781 aagggcagcg actatctgac cggcttcgcc ctgcccaatt tcttcttcca cgtaa
//
LOCUS       DASQVK010000449         3270 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_472505,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000449 DASQVK010000000
VERSION     DASQVK010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3270)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3270)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3270
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_472505"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            68..736
                     /gene="pspA"
                     /locus_tag="VE567_09705"
     CDS             68..736
                     /gene="pspA"
                     /locus_tag="VE567_09705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein PspA"
                     /protein_id="HYZ49153.1"
                     /translation="MGIFSRTRDIIAANMTDLLDRAEDPAKMIRMIILEMEETLVEVR
                     ASAARTIADQKEMRRHIAKLEKLQESWTEKAELALSKGREDLAKAALIERQKAADMAG
                     QLKAEIDVLDDALQASEADIAKLQQKLREARARQNTIMTRLESAHNRIRLREAYAGAR
                     VEDAFSRFEILERRVDLAEGRADAAGMGEPKTLEDQFAELRSSDKVDAELEALKARLA
                     NREG"
     gene            740..1015
                     /gene="pspB"
                     /locus_tag="VE567_09710"
     CDS             740..1015
                     /gene="pspB"
                     /locus_tag="VE567_09710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009823244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009271 - phage shock [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response membrane protein PspB"
                     /protein_id="HYZ49154.1"
                     /translation="MHEVLVPVFVCGILFIGLPWIILHYITQWKKSGGISREDENLLD
                     ELYETARRLDDRLHSIERIINAENPELEVRRPAPELPRADVRQIREK"
     gene            1019..1399
                     /gene="pspC"
                     /locus_tag="VE567_09715"
     CDS             1019..1399
                     /gene="pspC"
                     /locus_tag="VE567_09715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014077929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response membrane protein PspC"
                     /protein_id="HYZ49155.1"
                     /translation="MTASRTRFYLDKQNKKWLGVCAGIADYMGWDVTLVRIGMVVITL
                     AGAFPWSLIAYLATAWVARPKPSGLYSDKEEEQFWQGVRRSPARTTREVRGRLRDIDR
                     RLADVELYYTSRNRRLADEIDSLR"
     gene            1523..1744
                     /locus_tag="VE567_09720"
     CDS             1523..1744
                     /locus_tag="VE567_09720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003040649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49156.1"
                     /translation="MALFVLAGIARRFFAYKQKQLDVQAGQAAEKAAQYAAKTERLEQ
                     RVRVLERIATDKGADLATEIERLRDQPLN"
     gene            1771..2025
                     /locus_tag="VE567_09725"
     CDS             1771..2025
                     /locus_tag="VE567_09725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017182980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49157.1"
                     /translation="MNPFEMVVLIIAIVTVGRIFQARYGYRRRGCGPDRATEDAETRR
                     LREEVRSLKERIAVLERLATDDAGPRALEREIEALRSRDS"
     gene            2055..2291
                     /locus_tag="VE567_09730"
     CDS             2055..2291
                     /locus_tag="VE567_09730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006953523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49158.1"
                     /translation="MELSVYLEMGLVGLAGIGILTAGALRGWRGWLELKRLELQARTT
                     DHAAPAPTMSARIELADLRERIRKLEAIAAGVDL"
     gene            2560..2754
                     /locus_tag="VE567_09735"
     CDS             2560..2754
                     /locus_tag="VE567_09735"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HYZ49159.1"
                     /translation="MAGNVPLGPGTHDSGGNPNDLVVMDDFLYGEPMAIPEPASWALM
                     VGGFGLLGWRARARNGLAAA"
     gene            2792..3196
                     /locus_tag="VE567_09740"
     CDS             2792..3196
                     /locus_tag="VE567_09740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010544761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufE family protein"
                     /protein_id="HYZ49160.1"
                     /translation="MSVLANVFADYELLDADDRYRLLIDLGRSLEPMPDALKTEATKV
                     RGCSAQVWVYPVRQPDGRLHFLADSDAHITKGIVALVLLAVQDRTPAEILATDIEGSL
                     APFDLRNQLSSNRTQGIPNMIALIRETAARYA"
BASE COUNT          590 a         1098 c         1057 g          525 t
ORIGIN      
        1 cactgccggg gcgggtgccc ccttgtcccg ccccggcgcc ccttttcaca gttccaggag
       61 caaccctatg ggcattttct ctcgaacccg cgacatcatc gccgccaaca tgaccgacct
      121 gctggatcgc gccgaggatc cggccaagat gatccgcatg atcatcctgg aaatggagga
      181 gacgctggtc gaggtccgcg cctccgccgc gcgcacgatc gcggatcaga aggaaatgcg
      241 ccgtcacatc gccaagctcg aaaaactcca ggaaagctgg accgagaagg cggagctggc
      301 gctgagcaag ggccgcgagg atcttgccaa ggccgcgctg atcgaacgcc agaaggcggc
      361 cgacatggcc ggccagctca aggccgagat cgacgtgctc gacgacgcgc ttcaggcatc
      421 ggaagccgat atcgccaagc tgcagcagaa gctgcgcgag gcgcgcgcgc gccagaatac
      481 gatcatgacc cggctggaat cggcgcacaa ccgcatccgg ctgcgcgagg cctatgccgg
      541 cgcgcgcgtc gaggacgcat tcagccgctt cgagattctg gagcgccgcg tggaccttgc
      601 cgagggccgc gccgatgccg ccggcatggg cgagcccaag acgctggaag accagttcgc
      661 cgaactccgc tcgagcgaca aggtcgatgc cgagctcgag gcgctgaaag cccgtctcgc
      721 caaccgggag ggctgaggca tgcacgaggt cctcgtcccc gtcttcgtct gcgggatcct
      781 cttcatcggc ctgccctgga tcatcctcca ctacatcacg cagtggaaga agtccggcgg
      841 catcagccgg gaggacgaga atctgctcga cgagctgtat gaaaccgccc gccggctcga
      901 tgatcgcctc cactcgatcg agcgcatcat caacgccgaa aatccggaac tggaagtccg
      961 ccgccccgcg ccggagctgc ccagggccga cgtccgccag atcagggaga agtgagaaat
     1021 gactgctagc cgcacccgct tttacctcga caagcagaac aagaagtggc tcggggtctg
     1081 cgccggcatc gccgactata tgggctggga cgtgaccctt gtccggatcg gcatggtcgt
     1141 gatcacgctg gcgggcgcct ttccctggtc gctcatcgcc tatctggcga ccgcctgggt
     1201 ggcgcggccc aagccgtccg gcctctatag cgacaaggaa gaagagcagt tctggcaagg
     1261 cgtgcgccgc tcgccggcgc ggaccacgcg cgaagtgcgc ggccggctcc gcgacatcga
     1321 tcgccgcctg gccgatgtcg aactctatta caccagtcgc aaccgccgcc tcgccgacga
     1381 gatcgactcg ctacgctgat cgacggatac ggcaagttca tcgaaaaatc ttcgcggtcg
     1441 acggccggaa ccggtcagcc gcaagctggg gagtaacgtc atgggcatcg gcccgttctc
     1501 aatgatgatc ggcttttggt tcatggcctt gttcgtgctg gcgggcatcg ccagacgctt
     1561 cttcgcctac aagcagaagc agctcgacgt ccaagctggc caggccgccg aaaaagccgc
     1621 tcaatatgcc gccaagaccg agcgtctgga gcagcgcgtg cgcgtgctgg aacgcatcgc
     1681 caccgacaag ggcgccgacc tcgcgaccga gatcgagcgc ctgcgcgacc agccgctgaa
     1741 ctgaagcagg aatttcgggg agtatagacc atgaacccgt ttgaaatggt ggtgctgatc
     1801 atcgcgatcg tcaccgtcgg gcggatcttc caggcccgat atggctaccg ccgccgcggc
     1861 tgcggcccgg acagggccac cgaagacgcc gaaacgcgcc gcctgcgcga ggaagttcgg
     1921 tcgctgaagg agcgcatcgc ggtgctcgag cggctggcga ccgacgacgc cggcccgcgc
     1981 gcccttgagc gtgaaatcga agctttgcgg tcccgcgaca gctgagccgg cgggattgcc
     2041 ctaggagaag acgtatggaa ctgagcgtct atctggaaat gggtctggtg ggccttgccg
     2101 ggatcggcat cctcaccgca ggtgccctgc gcggctggcg gggctggctg gaactgaagc
     2161 ggctggaact ccaggcgcgg acgaccgacc atgccgcccc cgccccgacc atgagcgcgc
     2221 gcatcgaact cgccgacttg cgggaacgca ttcgcaagct cgaagcgatc gccgcggggg
     2281 tcgacctctg agtcatcgcc ggcgggtgca tcgactcgcc ggcgcatttc ccatattctt
     2341 ccggaccggg cgggggcgca ttccagctgc cgacgggttc cacagcgagc tcgccggcga
     2401 aacagggagc cggtccatgc atcaagccct cgctatcgct ttgctttcat ccgcgcttgc
     2461 cgccagttcg cggtagcggc gcagatcgtt cgttcgggca cgggcctcgg agccgttgcc
     2521 gcgcgggatg ctttccgagc cgatcttggc ggcggcatcg tggccggcaa tgtgccgctc
     2581 ggccccggca cgcacgattc cgggggcaat cccaatgatc tcgtcgtcat ggacgatttc
     2641 ctgtacggcg agccgatggc catcccggaa ccggcgagct gggcattgat ggtcggcggc
     2701 ttcgggctgc tcggctggcg ggcccgggcg cgaaacggcc ttgctgccgc ctgacgcttg
     2761 aactgggagg cgcaggcgtt acgtgcgcct catgtccgtg ctcgccaatg tctttgccga
     2821 ttatgaattg ctcgatgccg acgatcgcta tcgtctgctg atcgatctcg gccgcagcct
     2881 ggagccgatg cccgatgccc tgaagaccga ggcgacgaag gtgcgcggct gttcagccca
     2941 ggtctgggtc tatccggtcc gccagccaga cggccgcctg catttcctgg ccgacagcga
     3001 cgcgcacatc accaagggga tcgtcgcgct ggtgctattg gcggtgcaag accgcacgcc
     3061 ggccgagatc ctcgccaccg acatcgaagg ttcgctcgcc cccttcgacc tcaggaacca
     3121 gctcagctcc aaccgcacgc agggcattcc caacatgatc gccctcatcc gcgagaccgc
     3181 tgcccgctac gcctagcgcc tcgatcagct cgcggagcgg cgtgccgggc ttcaccagca
     3241 gccattcgcc gggccggtcc acgggaatga
//
LOCUS       DASQVK010000450         2360 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_30804, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000450 DASQVK010000000
VERSION     DASQVK010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2360)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2360)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2360
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30804"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..129
                     /locus_tag="VE567_09745"
     CDS             <1..129
                     /locus_tag="VE567_09745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017501379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYZ49161.1"
                     /translation="ERAERQMVERALKKHAYNISLAAAELGLTRASLYRRMERHGL"
     gene            119..1462
                     /locus_tag="VE567_09750"
     CDS             119..1462
                     /locus_tag="VE567_09750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010335552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HYZ49162.1"
                     /translation="MDFKGQFAIGLAGRMVVLLAVLAAFAAALAEPGLGAARIVAAAL
                     VVAAALALWTYIQRTNQEVARFIEAIRFGDMSASFRRPLAGSGFDALGEALDAGIRAF
                     REERSRLADESRFYQAIVDDLPVALLLIDAEERVEPVGKTARRMFGALEGVRVADYVL
                     FGESFAQALRSLQPGRRQLVTMALENGQTQRVLLRAAAVHRLGASHRVITVQPIQEAL
                     NAVEIATQSDLVRVLTHEIMNSMTPVTSLARTAADLMASADTGGDERIADARAAVETL
                     ARRADGVMHFVQSYRQISRTPQVNRQVFVASSFADELKRLFRADWPADRIGFEISVAP
                     ETLMLDADPDLLAQVLINLLRNGAEAAEGHAAAPQIRLRFEASRGGGATILVEDNGPG
                     IPEARSSEVFLPFYTTKPKGTGVGLSLARQIVLAHDGMIAIETSPLGGARFRIIL"
     gene            1515..1814
                     /locus_tag="VE567_09755"
     CDS             1515..1814
                     /locus_tag="VE567_09755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008833228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49163.1"
                     /translation="MGYIEDKQLHDSIDMIGLRAQATSIGLIQLAVELRRAGVLEDAA
                     IGRIKEAIAREIVLNAPKSISKERYLATVHKRLDHLFAGEEGVGPARREVFAPHG"
     gene            complement(1811..>2360)
                     /locus_tag="VE567_09760"
     CDS             complement(1811..>2360)
                     /locus_tag="VE567_09760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49164.1"
                     /translation="FLDRYLFDPLARALAPRAMAAMIDPAWLRAGAVGFLILSILTLL
                     AGWRWTGLALAMFSGPVDTLGRHLAALTMRLRRDQRSWMRWREGAASAVLLALGWNLR
                     EFGWGTVAIAAATLASLGALHEHERWIGRPSQRPPWLAEPDSLIWLLAPFALLGWWPV
                     GLAAQAGLAFASLLKVQRLTGR"
BASE COUNT          409 a          795 c          794 g          362 t
ORIGIN      
        1 gagcgtgccg aacgccagat ggtcgagcgc gcgctcaaga agcacgccta caacatctcg
       61 ctggcggccg cggagctcgg gctgacccgc gcatcgctct accgccgcat ggaaagacat
      121 ggactttaaa ggccaattcg ccatcggcct tgccggccgc atggtcgtgc tgctggcggt
      181 attggcggcg ttcgcggcgg ccctcgccga gcctggcctt ggcgccgcgc gtatcgtcgc
      241 tgccgcgctc gtcgtcgccg cggcgcttgc actctggacc tatatccagc gcaccaatca
      301 ggaagtcgca cgcttcatcg aggcgatccg cttcggcgac atgtcggcga gcttcaggcg
      361 cccattggcc ggttcgggct ttgatgctct gggcgaggcc ctcgatgcgg gcatacgcgc
      421 tttccgtgag gaacggtcgc gtctggcgga cgagagccgc ttctatcagg cgatcgtcga
      481 cgatcttccg gtcgcgctgt tgctgatcga tgcggaggag cgcgtggagc cggtgggcaa
      541 gacggcccgt cgaatgttcg gcgccctgga gggcgtgcgg gtcgccgact acgtcctgtt
      601 cggcgaaagc tttgcccagg ccctgcgcag cctgcagccc ggccggcggc agctcgtcac
      661 catggcgctc gaaaacggcc agacccagcg cgtgctgctg cgcgctgccg cggtacatcg
      721 gctgggtgcc tcacaccggg tcatcacggt ccagccgatc caggaagcgc tcaacgccgt
      781 cgagatcgcg acgcaaagcg atctggttcg ggtgctgacc cacgaaatca tgaactcgat
      841 gacgccggtt acttcactgg cccggactgc ggcggacctg atggcgagcg cggacacggg
      901 cggcgacgag aggatcgccg atgcgcgggc agcggtggag acgctcgccc gccgcgccga
      961 cggcgtcatg cacttcgtcc agagctaccg gcagatcagc cggacgccgc aggtgaaccg
     1021 acaggtcttc gtggcttcgt ccttcgccga cgagttgaag cggctgttcc gcgccgattg
     1081 gcccgccgat cggatcggct tcgagatcag cgtcgcgccg gagacgctga tgctggacgc
     1141 cgaccccgac ctgcttgcgc aagtgctgat caacctgctc cgcaacggcg ccgaagctgc
     1201 cgaagggcat gcagccgctc cgcaaattcg cctgcgcttc gaggcgtcgc gcggcggcgg
     1261 cgcgaccatc ctggtcgagg ataacggccc gggcattccc gaggccagaa gcagcgaagt
     1321 ctttcttccc ttctatacca ccaagcccaa aggcacgggc gtggggctca gcctcgcccg
     1381 gcaaatcgtg ttggcgcatg acggcatgat cgcgatcgag accagcccgc tcggcggcgc
     1441 ccgcttccgc atcatcctat aagccttgcg cccgctcccc gacccaatat cctcccgcta
     1501 gggagagaat cgccatgggc tatatcgagg acaagcaact tcacgattcg atcgacatga
     1561 tcggtttgcg cgcgcaggcg acgtcgatcg ggttgatcca gctcgctgtc gaactgcgcc
     1621 gggccggcgt gctggaggac gcggcgatcg ggcgaatcaa ggaagcaatc gccagggaaa
     1681 tcgtcctgaa cgcgcccaag tccatctcca aggagcgcta cctagcgacg gtgcataaac
     1741 ggctggacca tctttttgcc ggcgaggaag gggtcggtcc ggcgcggcgt gaggtcttcg
     1801 cgccccacgg ctagcgtccg gtcaacctct gcaccttgag cagggacgca aaggcgagcc
     1861 ccgcctgcgc tgccagcccc accggccacc agcccaggag agcgaaagga gcgagcagcc
     1921 aaatcagaga gtccggctct gcgagccagg gcggccgctg cgatgggcga ccgatccagc
     1981 gctcatgctc gtgcagcgcg cccagggacg ccaatgtcgc ggcggcgatc gccactgtgc
     2041 cccagccgaa ctcccgcaga ttccagccaa gcgcgagcaa tacagcgctt gccgctccct
     2101 cgcgccaccg catccagctc cgctggtcgc ggcggaggcg catggtgagc gccgcgagat
     2161 ggcggccgag cgtgtcgacg ggtccggaga acatcgccag ggcgaggcca gtccagcgcc
     2221 agccggcgag cagcgtcagg atcgagagga tcaaaaagcc taccgccccc gctctgagcc
     2281 aggccgggtc gatcatcgcg gccattgcgc ggggcgcgag cgcgcgggca agcgggtcga
     2341 agagatagcg gtcgagaaag
//
LOCUS       DASQVK010000451        10662 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_156248,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000451 DASQVK010000000
VERSION     DASQVK010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 10662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10662
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156248"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1988)
                     /gene="uvrB"
                     /locus_tag="VE567_09765"
     CDS             complement(<1..1988)
                     /gene="uvrB"
                     /locus_tag="VE567_09765"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013847698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HYZ49165.1"
                     /translation="MAIQIRTTLAEPETGETFIPHKPNRPGKSEGGKPFKLVSDYEPA
                     GDQPTAIAELVEAARAGERDQVLLGVTGSGKTFTMAKVIETLQRPALVLAPNKILAAQ
                     LYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRAL
                     LERDDVLIVASVSCLYGIGSVETYSAMVFSLKKGMSVDQREIIRKLVALQYKRNDQAF
                     ARGNFRVRGDTLELFPSHYEDTAWRIVFFGDEIEEIVEFDPLTGKKVASLDTVKVYAN
                     SHYVTPGPTLKQAMDAIRQELAERLKELVAEGKLLEAQRLEQRTNFDLEMIAATGSCA
                     GIENYSRFLTGRLPGEPPPTLFEYLPENALLFVDESHVTIGQVNGMSRGDHRRKLTLA
                     EYGFRLPSAIDNRPLRFNEWNAMRPQTTYVSATPGDWEMEQTGGVFSEQVIRPTGLID
                     PPVEIRPIEDQVDDLVNECRITAGQGYRTLVTTLTKRMAEDLTEYLHEAGLKVRYMHS
                     DVETLERIELIRDLRLGVYDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLI
                     QTIGRAARNAEGRVILYADTITGSMERAMRETERRREKQIAYNEAHGITPQSVKRHIG
                     DIIQHVATRDSVLVEIDEDRPHMVGHNLRAYIEELEKK"
     gene            2039..2593
                     /locus_tag="VE567_09770"
     CDS             2039..2593
                     /locus_tag="VE567_09770"
                     /inference="COORDINATES: protein motif:HMM:NF023696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3617 domain-containing protein"
                     /protein_id="HYZ49166.1"
                     /translation="MRKEIMLALLVLAACNRQPEVKIKNASAEEVAAKVKQSGAAKDV
                     RLQPGQWQVASEMKVIEATGMPQAAADQMKLAMARKSTDLQCITAEQVNKPDVFAGKR
                     DSGCTFDNFEMRGGKISAVMHCPSGPGGRMAMTMNGTYAPSSYTVDAAMEMSGAPGGQ
                     GMKMAMHSVGTRIGDCPAGSAAAK"
     gene            complement(2594..2977)
                     /locus_tag="VE567_09775"
     CDS             complement(2594..2977)
                     /locus_tag="VE567_09775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49167.1"
                     /translation="MSTAFPEFDGAGTQLGGSIIHMSLDDWGRMGRLLVDGKGAGGAQ
                     VVAPDWLAFLKTPAPTNPRYGGHVWLSQNGLVSMRGHIGQFVFAGARNGHSVVLVRLG
                     NTREDLLDKIVPTYERIAEAALPRG"
     gene            3165..3512
                     /locus_tag="VE567_09780"
     CDS             3165..3512
                     /locus_tag="VE567_09780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49168.1"
                     /translation="MRARRQIIWASIIILAALIAAALVYVQRMRPQLEVGVGYGARVA
                     CACRYIGNRPLGDCYKDFEPGMEPIRLSENPAEKSVTASVPLLATRTARFDPLLGCQP
                     ESFRGRPYEIRRP"
     gene            complement(3808..4923)
                     /gene="mnmA"
                     /locus_tag="VE567_09785"
     CDS             complement(3808..4923)
                     /gene="mnmA"
                     /locus_tag="VE567_09785"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010404859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HYZ49169.1"
                     /translation="MQADFQLGPDLKGKRIVVAMSGGVDSSVVAALAARSGAETIGVT
                     LQLYDHGAAVGRTGSCCAGQDIRDARAVCDRLGIAHYVFNHESRFRESVIDQFADEYL
                     AGRTPIPCVRCNMGVKFTDLFALARDLGADCLATGHYVRRVEGPHGPELHRAADPARD
                     QSYFLFATTSEQLGYLRFPLGGLPKPEVRAIAAELGLGVAAKPDSQDICFVPDGDYAR
                     LVKKLRPEAETEGEIVDLSGRLLGRHKGLIHFTVGQRKGLEIGGQPEPLYVIRLEPEA
                     QRVVVGPRRALAVASARLSEINWLGGSFDAPLAAKVRSLAKPVPARLTGDRLVFTQPE
                     YGVSPGQAAVLYAGDHVLGGGWIEETEGVAAALTAAA"
     gene            5069..5308
                     /locus_tag="VE567_09790"
     CDS             5069..5308
                     /locus_tag="VE567_09790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49170.1"
                     /translation="MADWKRRARPVRPDFATLVAVAAARQSASPTAQVLAAAEAGPVS
                     AVSLVELFADRRKGALVAASFNSGVAALLTVEKGM"
     gene            5412..5711
                     /locus_tag="VE567_09795"
     CDS             5412..5711
                     /locus_tag="VE567_09795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008995171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1153 domain-containing protein"
                     /protein_id="HYZ49171.1"
                     /translation="MIENQKIRPAQVIGPLGEPLTIDSLPPPNTTRWVVRRKAEVVAA
                     VNGGLLSVDEVCERYGLTVEEFAAWQRAVDRSGMPGLRVTRIQHYKSLYERQQKY"
     gene            5912..6118
                     /gene="rpsU"
                     /locus_tag="VE567_09800"
     CDS             5912..6118
                     /gene="rpsU"
                     /locus_tag="VE567_09800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011446475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HYZ49172.1"
                     /translation="MQILVRDNNVDQALRALKKKLQREGVYREMKLRRHYEKPSEKRA
                     RERAAAIRRARKLERKRLERDGAK"
     gene            6236..6808
                     /locus_tag="VE567_09805"
     CDS             6236..6808
                     /locus_tag="VE567_09805"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013039192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HYZ49173.1"
                     /translation="MSAVTAVPIQPTSRRVLAMLWSGIVLALLAAVALAWLGTGAAVA
                     KAGTNEEFLAWNARQPGVQTTASGLQYKVLKPGEGGHPTDADVALIKYKGTLRDGTVF
                     DENERAPLPVAQVVPGFSEGLKQMQKGGQYRLWIKPELGYGDRETGPIPANSLLVFDV
                     QLLEFVPMAVLQQMQMQQMMGGQGGPQGGR"
     gene            complement(6843..7862)
                     /locus_tag="VE567_09810"
     CDS             complement(6843..7862)
                     /locus_tag="VE567_09810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017980642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HYZ49174.1"
                     /translation="MRDPLVRAELKRASVWFGLAIGVAMIVLLIQPLMLIFAGLVFAS
                     LLDGGARLLGRVVAIPRPARVVIVLLGAIAFVAGVFYMTGVQISAQWAQLQTTLEAQG
                     TRFVHWLSGMGFVPAQADLMSFGRQMIGSLGKLTGYVGTVFGVVSSALLIVAIGLFIA
                     LEPRLYRRGVAWLIPTRSREHFQITLERMAHTLRRLMAGRLAGMVFEGVLTWIVLSLG
                     DVPMALLLGILTGLLAFIPNIGAFVSGVLMVAVGFSAGAETGLWAIGTYFSVQTFDGY
                     VMLPYVARKTVDMPPAITLGAQILLGTLLGFMGVALADPITAMIKVALERGSEREEEK
                     AAGQG"
     gene            complement(7907..8770)
                     /gene="lepB"
                     /locus_tag="VE567_09815"
     CDS             complement(7907..8770)
                     /gene="lepB"
                     /locus_tag="VE567_09815"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HYZ49175.1"
                     /translation="MSDGDQAETVKAPAKPKGTDWAAEAKGIFWLILAVLGFHSFIAK
                     PFYIPSESMMPGLLVGDRLVVTKYPYGWSYISPTFHLLPFVHGRLLGRMPERGDVVIV
                     TPPGENQDYIKRVIGLPGDRLEMRNGTVIINGVPVKRSLPTPRLVPVDENAPCSDLQF
                     PGRLVTGPDSKPYCELPIVHETLPNGRSYDTIELGASRADDFPPITIPPAHLFLMGDN
                     RDRSADSRVPLAEGGLGGPVPWENIGGRAEFITFSLDGTAEWYNPITWVEALRSGRAG
                     TSLHPQEDSAR"
     gene            complement(8785..9186)
                     /gene="acpS"
                     /locus_tag="VE567_09820"
     CDS             complement(8785..9186)
                     /gene="acpS"
                     /locus_tag="VE567_09820"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017183971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HYZ49176.1"
                     /translation="MIVGLGSDLCSIERIKASLERFGERFERRVFTDVERAKAAARPF
                     TRAGTYAKRFAAKEAFSKAVGTGFRRGVFMKDIGVVNAPSGKPTLSLEGGAKAALDAL
                     VPAGHKAQIHLTLTDDHPWAQAFVIIEAVPL"
     gene            complement(9183..9929)
                     /locus_tag="VE567_09825"
     CDS             complement(9183..9929)
                     /locus_tag="VE567_09825"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HYZ49177.1"
                     /translation="MLRLGVNIDHVATIRNARGGVHPDPVAAAKLAAKAGADGITAHL
                     REDRRHITDSDIERLRAEIELPLNLEMAATEEMLAIALRHRPHAACIVPEKREERTTE
                     GGLDADGHRETLRPMVERLSAAGIRVSLFIEPDARQVEAAIRLGAPVVEFHTGRYAHR
                     EGEARAEELRRIADCAALAIKNGIEPHAGHGLTFDNVVPVAAIPQIAELNIGHFLIGE
                     AIFIGLEESVRRMKALMESAHPSASVGIGR"
     gene            complement(9929..10510)
                     /gene="pyrE"
                     /locus_tag="VE567_09830"
     CDS             complement(9929..10510)
                     /gene="pyrE"
                     /locus_tag="VE567_09830"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010161309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HYZ49178.1"
                     /translation="MTDDEVLAEFRAAEALLEGHFILSSGLRSPRYLQCARVLMNPAR
                     GARLAEALVAKLPGGVRSRVEAVVSPAMGGVIAGQEVARALGVDAMFLERPTGTFELR
                     RGFRLHPGQRVLMMEDVVTTGLSSREAIAAIRAAGGEVIAAASLVDRSNGGADLGVPF
                     YPLIRIDVPSYEADKLPPDLAALPAVKPGSRAA"
BASE COUNT         1831 a         3497 c         3574 g         1760 t
ORIGIN      
        1 atcttctttt ccagctcttc gatataggcc cgcagattgt ggccgaccat gtgcggccgg
       61 tcttcgtcga tctcgaccag aaccgaatcc cgcgtcgcga catgctggat gatgtcaccg
      121 atgtggcgct tgaccgattg cggcgtgatg ccgtgcgctt cgttatacgc gatctgcttt
      181 tcgcgccggc gctcggtctc gcgcatcgcg cgctccatcg agccggtgat cgtgtcggcg
      241 tagagaatca cccgcccttc ggcgttgcgc gcggcgcggc cgatcgtctg gatcagcgag
      301 gtttcggagc gtaggaaccc ttccttgtcc gcatcgagga tcgccaccag cccgcattcc
      361 ggtatgtcga gcccttcgcg cagcaggttg atgccaacca gcacgtcata cacgccgagc
      421 cgcaagtcgc ggatcagctc gatgcgctcc agcgtctcga catcggagtg catgtagcgg
      481 accttgagcc ccgcttcgtg cagatactcg gtcagatcct cggccatgcg cttggtgagc
      541 gtggtgacca gggtgcgata gccctggccg gccgtgatcc ggcattcgtt gacgagatcg
      601 tccacctgat cctcgatcgg ccggatttcg accggcgggt cgatcaggcc ggtcgggcgg
      661 atcacctgtt cggaaaagac gccgccggtc tgctccattt cccagtcgcc cggcgtcgcc
      721 gacacatagg tggtctgcgg gcgcatcgcg ttccactcgt tgaaacgcag cggacggttg
      781 tcgatggcgg atggcaagcg gaagccatat tcggcgagcg taagcttgcg ccgatggtcg
      841 ccccggctca tgccgttcac ctggccgatc gtgacatggc tttcgtctac gaacagcagc
      901 gcattttccg gcagatattc gaacagggtc ggcggcggct cgcccggcag gcggccggtg
      961 aggaagcgcg aataattctc gatgcccgcg caggagcccg tggcggcgat catctccagg
     1021 tcgaaattgg tgcgctgctc cagccgctgg gcttcgagca atttcccttc cgcgaccagc
     1081 tccttcaatc gctcggcgag ctcctgccgg atcgcgtcca tcgcctgttt gagcgtcggc
     1141 cccggcgtca catagtgcga gttcgcatag actttcacag tgtcgaggct ggcgaccttc
     1201 ttgcccgtca gcgggtcgaa ctcgacaatt tcctcgatct cgtcgccgaa gaagacaatc
     1261 cgccaggccg tgtcctcata atgggacggg aacagctcca gcgtgtcccc gcggacgcgg
     1321 aaattgccgc gggcgaaagc ctggtcgttg cgcttgtact ggagcgcgac gagcttgcgg
     1381 atgatctcgc gctggtcgac gctcatgccc ttcttcaggg agaagaccat cgccgaatag
     1441 gtttcgaccg agccgatgcc gtaaaggcac gacaccgagg cgacgatcag cacatcgtcg
     1501 cgttcgagca gcgcccgggt cgcagagtgg cgcatccggt ctatcgcctc gttcaccgag
     1561 ctttccttct cgatgtacgt atccgaacgc ggcacatagg cttcgggctg gtaatagtcg
     1621 taatagctga cgaaatattc gactgcgttg tcggggaaga agttcttgaa ctcgccatag
     1681 agctgggcgg cgaggatctt gttgggcgcg agcacgagcg ccgggcgctg cagcgtctcg
     1741 atcactttcg ccatggtgaa ggtcttgccc gagccggtga cgcccagcag cacctggtcc
     1801 cgctctccgg cgcgcgccgc ctcgaccagc tcggcgatcg ccgtcggctg gtcgcccgcg
     1861 ggttcatagt ccgagacgag cttgaacggc tttccgcctt ccgacttgcc aggacggttg
     1921 ggcttgtgcg gaatgaaggt ctcgccggtt tcgggctcgg caagcgtggt gcggatttga
     1981 atcgccatgg cctcaggata tggtctcgca acggtgcgcg gaacagggga ggttggcgat
     2041 gcggaaggaa atcatgctcg cgctgctggt gctggcggcg tgcaacaggc agcctgaggt
     2101 gaagatcaag aatgcgagcg cggaggaagt cgccgcgaag gtgaagcaga gcggcgccgc
     2161 aaaggatgtg cgcctccaac ccggccagtg gcaggtcgct tcggagatga aggtgatcga
     2221 ggccacgggc atgccgcagg ctgccgccga ccagatgaag ctcgcgatgg cacggaaatc
     2281 gaccgacctg cagtgcatca cggcggagca ggtgaacaag cccgatgtgt tcgccggcaa
     2341 gcgcgacagc ggctgcacgt tcgataattt cgagatgcgc ggcggcaaga tcagcgcggt
     2401 catgcactgc ccatccggcc cgggcgggcg aatggcgatg acaatgaacg ggacttacgc
     2461 gcccagctcc tacactgtgg atgcggcaat ggagatgagc ggtgcccccg gcggacaggg
     2521 catgaagatg gcgatgcaca gtgtcggcac gcgcatcggc gactgtccgg cggggagtgc
     2581 tgcggccaaa tagtcagccg cgggggagtg ctgcctccgc gatccgttca taggtcggga
     2641 cgatcttgtc cagcaggtcc tcgcgcgtgt tgccgaggcg gacgaggacg accgaatggc
     2701 cgtttcgggc gcccgcgaag acgaactggc cgatatggcc gcgcatcgac acgaggccgt
     2761 tctgcgacag ccagacatgc ccgccatagc ggggattggt cggcgcgggc gtcttcagaa
     2821 aggcgagcca atcgggcgcg accacctgcg cgccgccggc gcctttgccg tcgaccagca
     2881 gccgccccat ccggccccaa tcgtcgaggc tcatatggat gatcgagccg ccgagctgcg
     2941 tgccggcgcc gtcgaactcc gggaaggctg tgctcacgcc cgccgggccg aacagccgct
     3001 cttgcgcaaa acgccgatag gcggcggcgc ggcggcgccg ggcaccgcaa gcgcgagaag
     3061 cgaggtgagg agcgcggcgc ttttcatgac gccagcctag ccgatccaac gcgtttcgcc
     3121 acccggaggt tggtggcggc gggaaactcg gctagccccg tggcatgcgg gcaaggcggc
     3181 aaatcatttg ggcgtcgatc attatcctcg cggccctgat cgccgccgcc ctggtgtacg
     3241 tccagcgcat gcgcccgcag ctcgaggtag gcgtcggcta tggcgcacgc gtggcctgcg
     3301 cctgccgcta tatcggcaac cgcccgcttg gcgactgcta caaggatttc gagcccggca
     3361 tggagccgat ccgcctctcc gagaacccgg ccgagaaaag cgtcaccgcc tccgtccccc
     3421 tcctcgccac ccgcaccgcc cgcttcgacc cgctgctggg ctgccagccg gaatcctttc
     3481 gggggcggcc ctatgaaatc cggcgccctt aactgtccgg atattctgcg ctatcgattg
     3541 cgtccgctac ggggggattt tcagccctta aattcacaaa cttcttaggg tgagccgcct
     3601 ttttcgtgaa cttaagcggg attatcgagc tagatcagtg acttgcacca taagccacgg
     3661 agacgagccg tgaatatggc gcgacgaatg gttgcacgat gggaaagagc cgttgccggc
     3721 gggaggccgg ggccggcgca gcgtatcaaa gccgacccgc tgtaggacag cgcaataatg
     3781 tgtcggcaat ggcgaagccg cggagaatca ggccgccgcc gtcagcgccg ccgccacccc
     3841 ttccgtctcc tcgatccaac cgccgccgag cacgtggtcg ccggcgtaga gtacggcggc
     3901 ctggccgggg ctgacgccgt attcgggctg ggtgaagacc agccggtcgc cggtgaggcg
     3961 ggcggggacg ggtttggcga gggagcggac cttggcggcg aggggggcat cgaagctgcc
     4021 gcccagccag ttgatctcgc tcaggcgcgc gcttgcgacg gccagggcgc gccgggggcc
     4081 gaccaccacg cgctgcgcct cgggttcgag gcgaatcacg tagagcggct cgggctggcc
     4141 gccgatctcc agccccttgc gctggccgac ggtgaagtgg atcagcccct tgtgccggcc
     4201 gagcaggcgg ccggacaggt cgacgatctc cccttcggtc tcggcctcgg ggcgcagctt
     4261 cttcaccagc cgggcatagt cgccgtcggg gacgaagcag atgtcctggc tgtcgggctt
     4321 ggcggcgacg ccgaggccca gctccgcggc gatcgcgcgg acttcgggct tcggcagccc
     4381 gcccagcggg aatcgcagat agccgagctg ttcggacgtg gtcgcgaaca ggaaatagct
     4441 ctggtcgcgc gccggatcgg cggcgcggtg gagctcgggt ccgtgcggcc cttcgacgcg
     4501 gcgcacataa tggccggtgg cgaggcaatc ggcgcccaag tccctcgcca gcgcgaacag
     4561 atcggtgaac ttcacgccca tattgcagcg cacgcagggg atcggcgtac ggccggcgag
     4621 atattcgtcg gcgaactggt cgatcacgct ctcgcggaac cggctctcat gattaaagac
     4681 ataatgcgcg atgccgagcc ggtcgcagac cgcgcgggcg tcgcgaatgt cctggccggc
     4741 gcagcagctc ccggtccggc cgaccgctgc gccgtgatcg tagagctgga gcgtgacgcc
     4801 gatcgtctcc gcgcccgagc gcgcggcgag cgcggccacg accgagctgt cgacgccgcc
     4861 cgacatggcg acgacgatgc gcttgccctt gaggtcgggc ccaagctgga aatcggcctg
     4921 cattcggcgc gcatatagtc gctcgcgcac gcttcgtcac cgacgcgtcg ccgccgaact
     4981 gcggtatggg gctttagctc tgctttaagt ccttccggtt acagacacgt tcaaccagag
     5041 ggacacagag ttgaagcagg aaccaatttt ggcggactgg aaacggcggg cgcggcccgt
     5101 ccgtccggac ttcgccacgt tggttgcggt ggcagcggcg cggcaatcgg cgagcccgac
     5161 cgcgcaggtg ctggcggcgg ctgaagccgg gccggtttcg gccgtctccc tggtcgagct
     5221 gttcgcggat cgccgaaagg gggcgctcgt ggcggcgagc ttcaacagcg gtgtcgcggc
     5281 tttgctaacc gtggagaaag gaatgtgacg ccgatgttta ccgagcggtt tcaggcttcc
     5341 tgaaccagaa ttcgctaggc ccttcgtatt gcgaggctcc ccaaaagagc cggtgttgct
     5401 tgaggacaag aatgatcgag aaccagaaaa tccgccccgc acaggtgatt ggcccactcg
     5461 gcgagccgct cactatcgac tcgctgccgc cgccgaacac gacccgctgg gtcgtgcgcc
     5521 gcaaggccga ggtggtcgcg gccgtcaatg gcggcctgct cagcgtcgac gaagtgtgcg
     5581 agcgctatgg tctcacggtc gaggaattcg ccgcctggca acgcgcggtg gaccgttccg
     5641 gcatgcccgg cctgcgcgtg acgcgcatcc agcattataa atcgctgtac gagcgccagc
     5701 agaaatactg acgcgcgcgt tcacgcggcc atcgagagag ccccgcccct cccggcgggg
     5761 cttttcgctt gtggaatcgc cgccgcaggt gtagaggccg cccaacggcg cgaacgcttg
     5821 tttgcgacga gcattatgct ttgctctgcg tcgatgtgcc gataggcggc catcgaacgc
     5881 tcgacatacc gatttggaga ttgacggcct tatgcaaatt ctcgtgcggg acaacaatgt
     5941 cgatcaggcg ctgcgcgcgc tcaagaagaa gctgcagcgc gagggcgtct accgcgagat
     6001 gaagctgcgc cgccattacg agaagccgtc ggaaaagcgc gcccgcgagc gcgcggctgc
     6061 catccgccgc gcccgcaagc tcgagcgcaa gcggctggag cgcgacggcg ccaaataagc
     6121 ttccgacgcc ccggaccagg ttcggggcgt ttctttttct gccgggcaaa atgatggatt
     6181 tccgccggcg cgggaatccc gtacgggccc gctgaaaccg aaccggagcc tgcccatgtc
     6241 cgccgtcact gccgttccga tccagccgac ttcgcgccgc gtgctcgcga tgctgtggag
     6301 cggcattgtc cttgccctgt tggctgccgt cgcgcttgcc tggctcggca ccggcgccgc
     6361 agtcgccaag gccggcacca acgaggagtt cctcgcctgg aacgcgcgtc agcccggggt
     6421 gcagaccacg gcttccggcc tccagtacaa agtgctgaag ccgggcgaag gcggtcaccc
     6481 gaccgacgcc gatgtggcgc tgatcaaata taagggcacc ttgcgggacg gcaccgtctt
     6541 cgacgagaac gagcgcgctc ccttgccggt ggcgcaggtg gttccgggct tttccgaggg
     6601 gctgaagcag atgcagaaag gcggccagta ccgcctctgg atcaagcccg agctcggcta
     6661 tggcgatcgt gagaccggcc cgatcccggc caattcgctg ctggtgttcg acgtccagct
     6721 gctcgaattt gtgccgatgg cggtgctgca gcaaatgcag atgcagcaga tgatgggcgg
     6781 ccaaggcggc ccgcagggcg gccgctgagg atcgggccaa gcgaggcgcg ggaaaccggg
     6841 cctcaaccct ggcccgccgc cttttcttcc tcgcgttccg atccgcgctc aagcgcgacc
     6901 ttgatcatcg cggtaatggg atccgcaagc gccacgccca taaagcccag caacgtgccc
     6961 agcaggatct gcgctccgag cgtgatcgca gggggcatgt ccaccgtctt ccgcgccaca
     7021 taaggcagca tcacatagcc gtcgaaggtc tggaccgaga aataggtgcc gatcgcccat
     7081 agcccggtct cggcgcctgc gctgaagccg accgcgacca tcagcacgcc gctcacgaag
     7141 gcgccgatat tggggatgaa ggcaagcagg ccggtcagga tgccgagcag cagcgccatc
     7201 ggcacgtcgc ccaggctcag cacgatccag gtcagtacgc cttcgaacac catgcccgcc
     7261 agccgccctg ccatcagccg gcgcagcgtg tgggccatcc gctcgagcgt gatctggaaa
     7321 tgctcgcgcg aacgcgtcgg gatcagccag gcgacgccgc gccggtagag ccgcggctcg
     7381 agagcgatga acagcccgat cgccacgatc agcagcgcgc tggacaccac gccgaagacc
     7441 gtgccgacat agccggtcag cttgccgagc gagccgatca tctgccggcc aaagctcatc
     7501 aggtcggcct gggcgggcac gaagcccatg cccgacagcc aatggacgaa gcgcgtgcct
     7561 tgcgcttcga gcgtcgtctg gagctgcgcc cattgcgcgg aaatctggac gcccgtcatg
     7621 tagaagacgc cggcgacaaa ggcgatcgcg ccgagcagca cgataacgac tctggcgggc
     7681 cgggggatgg cgacgacgcg cccaagcaga cgtgcgccgc cgtccagcag cgacgcgaag
     7741 accagcccgg cgaagatcag catcagcggc tggatcagca gcacgatcat cgcgacgccg
     7801 atcgccagcc cgaaccagac gctcgcgcgc ttcaattccg cgcggacgag cgggtcgcgc
     7861 atctcattgg gagcggcggc ggtgaccggc gccggctccg gggcggtcac cgcgcgctat
     7921 cctcttgcgg gtgcagcgac gttccggcgc ggccggagcg cagcgcctcg acccaggtga
     7981 tcgggttgta ccattccgcc gtgccgtcca gcgagaaggt aatgaactcg gcgcggccgc
     8041 cgatattctc ccatggcacc gggccgccca gcccgccttc cgcaagcggc acgcggctgt
     8101 cggcggagcg atcgcgattg tcgcccatca ggaagagatg ggcaggcggg atggtgatgg
     8161 gcgggaaatc gtcggcgcgg ctcgcgccca gctcgatcgt gtcatagctg cggccgttcg
     8221 ggagcgtctc gtgcacgatc ggcagctcgc aatagggctt gctgtcgggc ccggtcacca
     8281 ggcgaccggg gaattgcaga tcgctgcagg gcgcattttc gtcgaccggg accagccgcg
     8341 gcgtgggcag gctgcgcttc accggcacgc cgttgatgat caccgtgccg ttgcgcattt
     8401 cgagccggtc gccgggaagg ccgatcacgc gcttgatata gtcctggttt tcgcccggag
     8461 gcgtgacgat cacgacgtcg ccgcgctccg gcatgcggcc cagcagccgc ccatggacga
     8521 agggcagcag atggaaggtc ggcgagatat aggaccagcc atagggatat ttcgtcacca
     8581 ccagccggtc gccgaccagc aggccgggca tcatcgattc ggatgggatg tagaaaggct
     8641 tggcgatgaa gctgtggaag ccgagcaccg ccaggatcag ccagaaaatg cccttggcct
     8701 cggcggccca gtcggttcct ttcggcttgg ccggcgcctt tacggtttcg gcctgatcgc
     8761 catcgctcac ttggtcaatc cctctcacag cggcaccgcc tcgataatga cgaacgcctg
     8821 cgcccaggga tgatcgtcgg tcaacgtcaa atgtatttgg gccttgtgcc cggcggggac
     8881 aagcgcgtcg agcgccgcct tggccccgcc ctcaaggctt agcgtcggct tgcccgacgg
     8941 cgcattgacg acgccgatat ccttcatgaa gacgccgcgc ctgaagccgg tgccgaccgc
     9001 cttggagaag gcctctttcg cggcgaagcg cttggcatag gtgccggccc gcgtgaacgg
     9061 ccgcgccgcc gccttggcgc gctcgacatc ggtgaagacg cgcctttcga atcgttcgcc
     9121 gaaccgctca agggacgcct tgatgcgttc gatgctgcaa aggtcggagc cgagcccgac
     9181 gatcaccggc caatcccgac cgaagccgag ggatgcgcgc tttccatcag cgccttcatg
     9241 cggcggacgc tctcttccag cccaatgaag atcgcctcgc cgatcaggaa atggccgata
     9301 ttgagttcgg cgatctgcgg gatggcggcg acggggacga cattgtcgaa agtgaggccg
     9361 tggccggcat gcggctcgat gccgttcttg atcgccaggg ccgcgcagtc ggcgatgcgc
     9421 ctcagctcct cggcgcgcgc ctcgccttcg cgatgggcat agcggccggt gtggaactcg
     9481 accactggcg cccccagccg gatggccgcc tccacctggc gcgcgtcagg ctcgatgaac
     9541 aggctgacgc ggatgccggc ggcggacagc cgctcgacca taggccgcag ggtctcccgg
     9601 tgcccgtcgg cgtcgagccc gccctctgtc gtccgctcct cgcgcttttc cggaacgatg
     9661 caggcggcgt gcggccgatg ccggagcgcg atcgcgagca tttcctcggt tgccgccatt
     9721 tcgaggttca ggggcaactc gatttccgcg cgcaaccgct cgatgtcgct atcggtgatg
     9781 tgccgccggt cttcgcgcag atgcgcggtg atgccgtcgg cgccggcctt cgccgccagt
     9841 tttgccgccg cgaccggatc gggatgcacg ccgccgcgcg cattccggat cgtcgcgaca
     9901 tggtcgatat tgacgcccag ccgcagcatc aggcggcgcg gctccccggc ttgaccgcgg
     9961 gaagcgcggc cagatcgggc ggcagcttgt cggcttcgta gctcggcacg tcgatccgga
    10021 tcagcggata gaaaggcacg ccgagatccg cgccgccgtt ggagcgatcg accagcgacg
    10081 ccgccgcaat cacctcgccg cccgccgcgc gaatcgccgc aatcgcttcg cgcgaggaca
    10141 ggccggtcgt caccacatcc tccatcatca gcacccgctg gcccgggtgc aggcggaagc
    10201 cgcgccgcag ctcgaacgtg ccggtcgggc gttcgaggaa catggcgtcg acgcccaagg
    10261 cgcgcgcgac ttcctgcccc gcgatgacgc cgcccatcgc cggcgacacg accgcctcca
    10321 cgcgactccg cacgccgccg ggcagcttcg cgaccagcgc ctcggcgagc cgcgcgccgc
    10381 gcgccgggtt catcagaacc cgcgcacact gcagatatct ggggctgcga aggccggaag
    10441 agagaatgaa atggccctcg agaagggcct cggcagcccg gaattccgcc aaaacctcgt
    10501 cgtcggtcat gacgcggagc gatagggcgg gccagcggaa tacgcaatcc gccataagca
    10561 gccgcgctac cgcttgaggc agcggaaaac cctgcctata agcccgccaa ttcgcttcca
    10621 gcatgctcgt tgcgggcgtt cgccgccggc aacctcaggg ga
//
LOCUS       DASQVK010000452         2219 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_251056,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000452 DASQVK010000000
VERSION     DASQVK010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2219
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251056"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(73..1146)
                     /locus_tag="VE567_09835"
     CDS             complement(73..1146)
                     /locus_tag="VE567_09835"
                     /inference="COORDINATES: protein motif:HMM:NF014301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HYZ49179.1"
                     /translation="MSRAFLCLMPLALVGATAPSAPVFTPEAFRSHVAFLADDLLEGR
                     DTGSRGHEIAARYVASRFEALGLKPGGDNGGWYQRVTFQKTSPGPVPGTLTLTGPAGT
                     QSWTHGGDVLIGLNPQEARTDLTAPLVFVGYGIADQSLGIDDYRGLDVRGKIVVALRG
                     YPRGMPSEIGAHLNSVKAEAAQAHGAIGIVYVDTTLSAKARAWSVRQRYAGSPEFNWV
                     AKDGKPHLDAPGIRASASADDTVAQALFAGAPRSLAAVRAEADRKDGRPKGFLLKGTA
                     RITAETVSERVTSPNVIGVLPGSDPKLAPQVVVLSAHLDHIGISSPRPGDAPDKDRIN
                     NGALDNASGIATMLEVARAAAAA"
     gene            1245..>2219
                     /locus_tag="VE567_09840"
     CDS             1245..>2219
                     /locus_tag="VE567_09840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017664252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HYZ49180.1"
                     /translation="MRPFWLAAPLFLLPLPALAQTDRPAPLPQLAQAVNIPYEQFTLP
                     NGLRVIVSTDRKAPVVAVSIWYNVGSKMEPAGKTGYAHLFEHLMFNGSENAPGDFFEP
                     LQQIGATDVNGTTWFDRTNYFETVPTPALERILFLESDRMGHFVGGLTEKNLKNQIGV
                     VQNEKRQGDNQPFGLVEYAQIKALIPPDHPYGHSTIGSMADLDAASLDDVKGWFRQHY
                     GPNNAVLVLAGDIDVPTAKRLVEKYFGDIPRGPQQGPVAVSVPTPASRVDEVMKDRVA
                     TTRIYRTWAVPGLNDPDAVPLDIAATVLGGLSSSRLDNALVRGDKSAVH"
BASE COUNT          379 a          757 c          704 g          379 t
ORIGIN      
        1 ataatcggcg ccgagcaggc ctttttcttc accggtcgag gcgaggaaca gcaaggttcg
       61 gcgtggtttg tcctatgcgg cggctgcagc gcgggcgact tccagcatcg tcgcgatgcc
      121 ggaggcattg tcgagcgcgc cattgttgat ccggtccttg tccggcgcat cgcccggcct
      181 ggggctgctg atgccgatat ggtcgagatg cgccgagagg accaccacct gcggcgcgag
      241 cttggggtcc gaccctggca gcacaccgat cacattgggg ctggtcacgc gctcgctgac
      301 tgtctccgcc gtgatgcgcg ccgtcccctt cagcaaaaag cccttgggcc ggccgtcctt
      361 gcggtcggct tcggcgcgga cggccgccag gcttctcggc gcaccggcga acagtgcctg
      421 cgcgaccgtg tcgtcggcgc ttgccgaggc gcggatgccg ggcgcatcca gatgcggctt
      481 gccgtccttg gcaacccagt tgaactcggg cgacccggca tagcgctggc gcaccgacca
      541 agcgcgggcc ttggccgaga gggtcgtgtc gacatagaca atgccgatag cgccgtgcgc
      601 ctgcgccgct tcggccttca cgctgttcag atgcgcgccg atctcgctcg gcatgcctcg
      661 gggatagccg cgcaaggcga cgacgatctt tccgcgcaca tccagcccgc gataatcgtc
      721 gatgccgagg ctctgatcgg caatgccata gcccacgaac acgagcggcg cggttaggtc
      781 ggtcctggct tcctgcgggt tgagcccgat cagcacgtcg ccgccatggg tccagctctg
      841 cgtgccggcc ggtcccgtca gcgtaagcgt gcccggcacc ggccccggac tcgtcttctg
      901 gaatgtgacg cgctgatacc agccgccatt gtcgccgccc ggcttcaggc ccaaggcttc
      961 gaaacgcgaa gcgacatagc gcgcggcaat ctcatgcccg cggctgccgg tgtcgcgccc
     1021 ttcgagcaaa tcgtcggcca ggaaagcgac gtgcgatcga aaggcttcgg gcgtgaagac
     1081 gggcgccgag ggcgcggtgg cgccgacaag cgccagcggc atgaggcaaa gaaacgctcg
     1141 cgacatgatt tccccctatt cgtcggccgg acgaacggac agcgttggtt cagccaaacc
     1201 gcgctgctat gcaagccgct catcgtttcg cgcaaggatc acgcatgcgc cccttctggc
     1261 ttgccgcccc gcttttcctc cttccccttc ccgctctcgc ccagaccgat cggccggcgc
     1321 cgcttcccca gctcgcccag gcggtcaaca ttccctatga gcaattcacg cttcccaacg
     1381 gcctgcgcgt gatcgtctcg accgaccgca aggcgccggt ggtggctgtg tccatctggt
     1441 acaatgtcgg ctcgaaaatg gagcccgccg gcaagaccgg ctacgcacat ctgttcgagc
     1501 atctgatgtt caacgggtcg gaaaacgcgc ccggcgattt cttcgagccg ctgcagcaga
     1561 tcggcgcaac cgatgtgaac ggcacgacct ggttcgatcg caccaattat ttcgagacgg
     1621 tgccgacccc cgcgctggag cgcatcctgt tcctcgaaag cgaccggatg ggccattttg
     1681 tcggcggcct caccgaaaag aacctcaaga accagatcgg agtcgtccag aacgaaaagc
     1741 ggcagggcga caaccagccg ttcggcctgg tcgaatacgc ccagatcaag gcgctcattc
     1801 cgccggatca tccttatggc cattcgacga tcggatcgat ggccgatctc gacgccgcca
     1861 gcctcgacga cgtgaagggc tggttccgcc agcattacgg gcccaacaac gccgtgctgg
     1921 tgctcgccgg cgacatcgac gtgccgacgg cgaaacggct ggtcgagaaa tatttcggcg
     1981 acattccgcg ggggccgcag caggggccag tcgcggtttc ggtgcccacg cccgcaagcc
     2041 gcgtcgacga agtgatgaag gaccgggtgg cgaccacgcg catataccgg acctgggctg
     2101 tgcctggcct caacgatccc gacgcagtgc cgctcgacat tgccgcgacc gtgctcggcg
     2161 gcctctccag ctcccgcctc gacaacgcat tggtgcgcgg cgacaagagc gcggtgcac
//
LOCUS       DASQVK010000453         3767 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_31423, whole
            genome shotgun sequence.
ACCESSION   DASQVK010000453 DASQVK010000000
VERSION     DASQVK010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3767)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3767)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3767
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31423"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..722)
                     /locus_tag="VE567_09845"
     CDS             complement(<1..722)
                     /locus_tag="VE567_09845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HYZ49181.1"
                     /translation="MSSKSAPTHPPAGADIAISIRERISAFDGNGTLAATLRELFTIL
                     EPRLDEISRAFWEALDTAPHIPARIAGETLEEQIHFISAYNREKYTNIAGQRWVDIAR
                     SSAALAEAEGLPLYTMFAASAASYDMIARITYSACGDDIDKLARLTTAARRVSLMEAE
                     VMAAFVSEFRARQASAARSEQADLFQNRVASDVSLAFTLGEALRGQAADASSAARGML
                     GKASEVAAAAEQSAVAMREAAHT"
     gene            912..1328
                     /gene="sdhC"
                     /locus_tag="VE567_09850"
     CDS             912..1328
                     /gene="sdhC"
                     /locus_tag="VE567_09850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045282 - plasma membrane succinate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, cytochrome b556
                     subunit"
                     /protein_id="HYZ49182.1"
                     /translation="MSSSNRTRPLSPHLTIWRWGPHMAVSILHRVTGSGMATVGAVLL
                     VWWLAAMASGEAAYNGFLDVFTYHSGKLNALGYLFGIGLTATLFQHMGSGLRHFVLDT
                     GAGYELKANKLSAQLTWVFAIVMTIIVWGYIIGVKG"
     gene            1328..1714
                     /gene="sdhD"
                     /locus_tag="VE567_09855"
     CDS             1328..1714
                     /gene="sdhD"
                     /locus_tag="VE567_09855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045282 - plasma membrane succinate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, hydrophobic membrane
                     anchor protein"
                     /protein_id="HYZ49183.1"
                     /translation="MGTGTEIGRVRGLGSAKAGAHHWWVQRLTAGSNFLLMSWFLLSL
                     ARLPAYDYATVTTWLASPFAALPMALLVASVFWHFRLGLQVVIEDYQHGESRVVALVL
                     LNFYTVAMAAVAIFSILKIAFTGGAA"
     gene            1714..3504
                     /gene="sdhA"
                     /locus_tag="VE567_09860"
     CDS             1714..3504
                     /gene="sdhA"
                     /locus_tag="VE567_09860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010218026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HYZ49184.1"
                     /translation="MPEAYKIIDHTYDAVVVGAGGAGLRATMGIAGAGLKTACITKVF
                     PTRSHTVAAQGGIAASLGNMGPDHWTWHMYDTVKGSDWLGDQDAIEYLVREAHAAVYE
                     LEHAGMPFSRTNEGKIYQRPFGGMMQNMGEGPPAQRTCAAADRTGHAMLHTLYQQSLK
                     YDADFFIEYFALDLIMEDGACRGVIALCMEDGTIHRFRAHNTVLATGGYGRCYFSATS
                     AHTCTGDGNAMVLRAGLPLQDMEFVQFHPTGIYGAGVLITEGARGEGGYLTNSEGERF
                     MERYAPSAKDLASRDVVSRSMAMEIREGRGVGKEKDHIFLHLDHIDAKVLHERLPGIT
                     ETGKIFAGVDLTRQPLPVVPTVHYNMGGIPTNYHGEVVTLKDGNPDTVVPGLFAVGEA
                     ACVSVHGANRLGSNSLIDLVVFGRATGLRIAEILKPNTTHNPLPKGSEEQTLTRLDKF
                     RHANGGSPTAQIRREMQRTMQAHCAVFRDTGLLEEGKAKIDVVARSIEDVNVTDRSLI
                     WNTDLVETLELDNLLGQAVVTMHAAANRKESRGAHMHEDFPERDDANWMKHTVTWLNP
                     GASVTIDYRPVHDYTLTDDIAYIKPKKRVY"
BASE COUNT          649 a         1190 c         1282 g          646 t
ORIGIN      
        1 gtgtgcgcgg cctcgcgcat cgccaccgcc gactgttcgg ccgcagccgc gacttcggaa
       61 gccttgccga gcatgccgcg cgccgcgctc gaagcgtcgg ccgcctggcc gcgaagcgct
      121 tcgcccagcg tgaaggccag ggagacatcg gatgcgactc ggttctggaa gagatcggcc
      181 tgctcgctac gcgcggccga agcctggcgc gcgcggaact cgctcacaaa ggcggccatg
      241 acctccgcct ccatcagcga tacccggcgg gcggcggtcg tcagccgtgc cagcttgtcg
      301 atgtcgtcgc cgcaggcgct gtaggtgatg cgcgcgatca tgtcataaga cgccgccgat
      361 gcggcgaaca tcgtgtagag tggtagcccc tcggcttcgg ccaaggcagc gctggaccgt
      421 gcgatatcga cccagcgctg gccggcgatg ttcgtatatt tctcgcggtt ataggcgctg
      481 atgaagtgga tctgttcctc gagcgtctcg ccggcgatcc tggcggggat gtgcggggca
      541 gtgtcgagcg cttcccagaa ggcgcgggaa atctcgtcca gccggggctc gaggatcgtg
      601 aacagctcgc gcagagtcgc ggcaagcgtg ccgttgccgt cgaacgcgct aatgcgctcg
      661 cgaatggaaa tcgcgatgtc cgcgccggct ggggggtggg tcggggccga tttggaactc
      721 acgtgtcttc cactttcgct acgcctgggg agtcctgact aaggcgcggc tggtaaagtc
      781 tcggttaaac acgcaccgca atctacaaca cccgtcgctt gcgctgcctc aatgatccgg
      841 gggcgaaccc attgccgttc atgggttccg accctaaaga cgggcgccac aaccatcgca
      901 gaggggcttc gatgagcagc agcaaccgca cgcggccttt gtcgccgcac ctgacgatct
      961 ggcgctgggg gcctcatatg gcggtgtcga tcctgcaccg cgtcacgggc tcgggcatgg
     1021 cgacggtcgg cgcggtcctg ctggtctggt ggctcgcggc gatggcgagc ggcgaggcgg
     1081 cgtacaacgg ttttctcgac gtcttcacct accattcggg caagctcaat gcgctcggct
     1141 atctgttcgg catcgggctc accgccacgc tgttccagca catgggctcg ggcctccgcc
     1201 atttcgtgct ggatacgggc gccggatatg agttgaaggc caacaagctg tcggcccagc
     1261 tcacctgggt gttcgcgatc gtgatgacga tcatcgtctg gggctacatc atcggggtga
     1321 agggctgatg gggacgggca ccgaaatcgg ccgcgtgcgg ggcctcggct ccgccaaggc
     1381 gggcgcgcat cactggtggg tccagcgtct gaccgcgggc tccaattttc tgctgatgag
     1441 ctggttcctg ctctcactcg cacggctgcc ggcctatgat tatgcgaccg tcacgacctg
     1501 gctcgcttcg ccgttcgcgg cgctgccgat ggcgctgctg gtcgccagcg tcttctggca
     1561 tttccgcctt ggcctgcagg tggtgatcga agactatcag catggcgaga gccgcgtggt
     1621 cgcgctggtc ctgctcaatt tctacacggt ggcgatggcc gccgtcgcca tcttctccat
     1681 cctgaaaatt gccttcaccg ggggtgcggc ttgatgcccg aggcttacaa gatcatcgac
     1741 cacacttacg acgcggtagt ggtcggggcg gggggcgcgg gcctgcgcgc gacgatgggc
     1801 attgccggcg ccggcctcaa gaccgcctgc atcaccaagg tgttcccgac gcgcagccac
     1861 acggtcgcgg cgcagggcgg catcgcggcg agcctcggca atatgggccc ggaccattgg
     1921 acgtggcaca tgtacgacac cgtgaagggc tccgactggc tcggcgacca ggacgcgatc
     1981 gaatatctgg tccgggaagc gcatgccgcc gtttacgagc tcgaacatgc gggcatgcca
     2041 ttcagccgga ccaacgaagg caagatctat cagcgtccgt tcggcggcat gatgcagaat
     2101 atgggcgaag gcccgcccgc gcagcgcacc tgcgcggcgg cggaccggac ggggcacgcg
     2161 atgctccaca cgctctacca gcagagcctg aaatacgatg ccgatttctt catcgagtat
     2221 ttcgcgctcg acctgatcat ggaagacggc gcgtgccggg gcgtgatcgc gctctgcatg
     2281 gaagacggca cgatccaccg cttccgcgcg cacaatacgg tgctggccac gggcggttat
     2341 ggccgctgct atttctcggc cacgtcggcg cacacctgca ccggcgatgg caatgcgatg
     2401 gtgctgcgcg ccgggctccc gctgcaggac atggaattcg tccagttcca cccgaccggc
     2461 atctacggcg ccggcgtgct gatcaccgaa ggcgcgcgtg gcgagggtgg gtatctgacc
     2521 aactccgaag gcgagcgctt catggagcgc tatgcgccgt cggcgaagga cctggcctcg
     2581 cgcgacgtgg tgtcgcgctc gatggcgatg gagattcgcg aagggcgcgg cgtcggcaag
     2641 gaaaaggacc atatcttcct tcacctcgac catatcgacg ccaaggtgct gcacgagcgg
     2701 ctgcccggca tcaccgagac aggcaagatc ttcgcgggcg tcgacctgac tcgccagccg
     2761 ctgccggtgg tgccgaccgt tcactacaac atgggcggca tcccgacgaa ctatcacggc
     2821 gaagtcgtca cgctgaagga cggcaatccg gacacggtgg tgccggggct gttcgcggtg
     2881 ggcgaggcgg cctgcgtgtc ggtgcacggc gccaaccggc tcggctccaa ctcgcttatc
     2941 gacctggtgg tgttcggccg cgcgacgggg ctgcggattg cggagatcct gaagcccaac
     3001 acgacgcaca atccgctgcc caagggctcg gaggaacaga cgctgacgcg gctcgacaaa
     3061 ttccgccacg cgaacggcgg ctcgccgacc gcgcaaatcc gccgcgagat gcagcgcacg
     3121 atgcaggcgc attgcgccgt gttccgcgac accggcctgc tggaggaagg caaggccaag
     3181 atcgacgtgg tcgccaggtc gatcgaggac gtgaacgtca ccgaccgttc gctgatctgg
     3241 aacaccgacc tggtcgagac gctggagctc gacaatctgc tcgggcaagc agtggtgacg
     3301 atgcacgctg ccgccaaccg caaggaaagc cgcggcgcgc acatgcacga ggatttcccc
     3361 gagcgcgacg acgcgaactg gatgaagcac acggtgacgt ggctgaaccc cggcgccagc
     3421 gtcacgatcg actaccgccc ggtgcatgac tacacgctga ccgacgacat cgcgtatatc
     3481 aagccgaaga agcgggtgta ttaaccccgg acgcggctat gcggcgacgc cgagcggttc
     3541 gacgcggatg tcgtcttgat gagcacgcgc cacggcgagt tcgtgcgcgg tctgcatcct
     3601 agggctcaag cccaatcagc gggttgaggc ggagcggctt tcctgattca gtgcggaggt
     3661 ggatcgcggg aggctgggcg tggcgctgtt ttggttgtca gacgaagcat gggcggcgat
     3721 cgagccgcac ctgccgaaga accagcctgg agcgcgccgg gtggatg
//
LOCUS       DASQVK010000454         9413 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_251468,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000454 DASQVK010000000
VERSION     DASQVK010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 9413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9413
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251468"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            217..660
                     /locus_tag="VE567_09865"
     CDS             217..660
                     /locus_tag="VE567_09865"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HYZ49185.1"
                     /translation="MDITKALHTDHQQLKKLIRAVNKSEDAEERRRLFTEFAELLTRH
                     SKAEEKVVYDALIATGEEEEEEAGHEGYTEHMLAETLLKKLQAGADPMSPEWSAEAKV
                     MMEILEHHIEEEEDEIFGQVKEDFDPAQRREMGDRFEEQKEQVKA"
     gene            complement(709..1527)
                     /locus_tag="VE567_09870"
     CDS             complement(709..1527)
                     /locus_tag="VE567_09870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010126657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYZ49186.1"
                     /translation="MSEDLARIAAALERIAPPSPPTADPRSAAAYLWRGAALAEARHF
                     APLPLDLLTGIDAQKAAVLDNARRLARGHAAHDVLLWGAKGTGKSALVKATVGAVRAE
                     RLDLALVDVAADRLDTLPLLFEQIADAGRAFILFVDDIGFEAGGPETRALRSLLEGGA
                     EARPANARLHVTSNRRHIVARDIAEQESAINPRDIVDDRLALADRFGLTLGFHAMDQA
                     TYLAIIERYAAAYALPFDTEDALRWATQRGARSGRVAWQYVTELAGRSGQPIQP"
     gene            1594..2655
                     /locus_tag="VE567_09875"
     CDS             1594..2655
                     /locus_tag="VE567_09875"
                     /EC_number="2.7.7.13"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004476 - mannose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-1-phosphate
                     guanylyltransferase/mannose-6-phosphate isomerase"
                     /protein_id="HYZ49187.1"
                     /translation="MSDLITPVILSGGSGTRLWPLSLPEKPKQLLAIGGEQTMLQATA
                     ARTLDRSRFAAPIVVANLAHADMIEAQLNAIDCAPAALVLEPAGRNTAPAIALAALAA
                     APDALLLVMPSDHVIGRPDAFLEAVDRATPIAREGWLVTFGIEPEHPETGFGYIKLGE
                     RLADSVHRVERFVEKPPLADAQRMLREGGYAWNGGIFMFRAEAYLQALATHAPEILGP
                     VRAAIAAAGHEGARIHPDAERFSACPSDSIDYAVMEKAERVAVAPVAMAWSDVGSWDA
                     VHALGPGDARSTVATGDVIALDTDNCLIRSDGPRVATLGVSDLIVIATGKHVLVLPRG
                     RSQEVKRLVEELKVRDAAG"
     gene            complement(2710..3270)
                     /locus_tag="VE567_09880"
     CDS             complement(2710..3270)
                     /locus_tag="VE567_09880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007404132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49188.1"
                     /translation="MKRFALSALASAAVLAGCATPTPYQPLGAPTGVSGGFSEQQIER
                     NRVRVSFTGNQFTSRERVETYLLFRAAELTVQHGYDSFTMVDRDTDKRTTIETSPRPY
                     GPGPWGYWGPSWRYYGSFGWRSWDPWGYDPFWADTVDVRAIEQYEATAEIVMFNGPPR
                     SVRDFDAREVMRNLGPTIEPPPPPRR"
     gene            3428..4657
                     /locus_tag="VE567_09885"
     CDS             3428..4657
                     /locus_tag="VE567_09885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018250665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HYZ49189.1"
                     /translation="MATIVQPRPELRADPLDVSRAELYRDDVWQEPFRRLRAEAPVYY
                     CEHSSFGPYWSVSTYKPIVHVEALPDIFSSQPSITLGDPIEGEPHLPMFIAMDRPKHT
                     DQRRTVAPAFTPSEITRMGEDVRRRTVEILDDLPWGETFDWVDRVSIELTTQMLAILF
                     DFPWEDRRKLTFWSDWAGDIELFHNPETRQERLMHLYECASYFKQLWAEKVDKPLTPD
                     LISMMVHSEAMSHMDDHEFLGNLILLIVGGNDTTRNSMSGVVYGLDKFPDERSKLEQN
                     PELIANAVQEIIRWQTPLAHMRRTATQDTELEGQKIKAGDKLALWYISANRDETVFEN
                     PDKMIVDRPNARRHLAFGYGIHRCVGARLAELQIGILLEEMAKRRMRVEVVEEPVRVS
                     ACFVHGYRKMPVQISRY"
     gene            4713..5201
                     /gene="msrB"
                     /locus_tag="VE567_09890"
     CDS             4713..5201
                     /gene="msrB"
                     /locus_tag="VE567_09890"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010218452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HYZ49190.1"
                     /translation="MIERRMMLASGAAAVALAWLGQRADAAAPAADPRFRLTPAEWRK
                     RLRGDAYAVLREEATERPFTSPLLKEHRAGVFVCGGCGLPVFSSGTKFDSGTGWPSFW
                     AALPGATATATDTKLGFERVEEHCRRCGGHLGHIFDDGPKPTGKRHCINGLALKFVPG
                     KA"
     gene            complement(5211..5915)
                     /locus_tag="VE567_09895"
     CDS             complement(5211..5915)
                     /locus_tag="VE567_09895"
                     /inference="COORDINATES: protein motif:HMM:NF014090.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT family protein"
                     /protein_id="HYZ49191.1"
                     /translation="MDEPAPATKGVTLASKLNWLRAGVLGANDGIVSTSSLIFGVAGA
                     NASHSTIVLAGIAAIAAGAMSMAVGEYVSVSNQRDVEQAEICRERELIDADPSYELRR
                     LAELLEERGMSPNLAREAADELQQRSPLSALSRVELGIDPAAIVSPWQAAVASMVSFT
                     IGGLIPLVAMLVSPRAIEIWVSGAAVAAALGLSGAISARLGRTPWLPSVLRMALGGAA
                     AMGFTYAIGSIAGTQL"
     gene            complement(5947..6714)
                     /locus_tag="VE567_09900"
     CDS             complement(5947..6714)
                     /locus_tag="VE567_09900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015459020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase/phosphoenolpyruvate mutase
                     family protein"
                     /protein_id="HYZ49192.1"
                     /translation="MTQGEKARAFAALHIPGSPVILFNAWDPGSAKSVAEAGAKAIAT
                     GSWSVAAANGFSDAEALPFDLALANAERIVKAVDLPVTLDFEGGYAVEPPELAANFAL
                     VLSTGAIGCNFEDQVVGGEGLHPVKVQAARIEALRREAERAGIPAFINARTDIFLKAG
                     PEAHDAAAVDQALERAHAYADAGASGFFVPGLADERLLARVCESSPLPVNAMMFPGMP
                     STKRLAELGLARISHGPGPYRHAMKALTEAARAAMIA"
     gene            complement(6711..7550)
                     /locus_tag="VE567_09905"
     CDS             complement(6711..7550)
                     /locus_tag="VE567_09905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49193.1"
                     /translation="MIGAALLLAAAAPAIWSTPPISSDQFESHPAFDPWTGDLWFVRS
                     TPKFRGWRIKLSHCGPEGWTEPVDAPIAGDGVEADPWFSPDGRTLWFISTRSTDGVHR
                     SDLDIWRATRGKDGRWNKPERLPEPVNSSGQEWFPRLDRDGWLYFGSDRPGGFGKTDI
                     WRARQGRDGKWTVENAGAALNTADDEYEPLPSPDGRWMLLSGADAYYRSERTAKGWSP
                     RVRLGPEINVNGTEIGAAFSPSGMSWLFGRDTKDGRSGELMLMKGDEDWPESCPASRK
                     GKP"
     gene            complement(7550..8350)
                     /locus_tag="VE567_09910"
     CDS             complement(7550..8350)
                     /locus_tag="VE567_09910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007687468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HYZ49194.1"
                     /translation="MIIRTILVDDEPLAIQGLQLRLEPHEDVEIVDTCSNGREAIRSI
                     KTNKPDLVFLDIQMPGFDGFSVVQGLMDIEPPLFVFVTAYSDHAIRAFEAQAVDYLMK
                     PVEEERLAATLDRVRQRIAEKRGAEEVDRLREVLAEVAPEAAAEISESPEAPSASRFE
                     KMINIKDRGQIFRVDVDTIERIDAAGDYMCIYTADNTLILRETMKDLEKRLDPRRFQR
                     VHRSTIVNLDLVKQVKPHTNGECFLVLDSGAQVKVSRSYRDVVARFVH"
     gene            complement(8347..>9413)
                     /locus_tag="VE567_09915"
     CDS             complement(8347..>9413)
                     /locus_tag="VE567_09915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009820796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HYZ49195.1"
                     /translation="FDDKNRAFWNLQTAGWAGYFLLRALSGFANGLTLAFLVPVAVST
                     ATGYSLTLVLGALYRELIRRRPVVTWLGSIAGIGAAAGIYSLIDAWIFNTVQRPGEAF
                     QISLFLGTIFLDFVVIGAWSALYYAINFFLVVEKQADQLRALESQASTAQLAMLRYQL
                     NPHFLFNTLNSISTLVLLKQTERANAMLSRLSSFLRYTLVNEPLGQVTLEQEIETLKL
                     YLEIEKMRFEERLRPIFEIDPVVLKARLPSLLLQPLVENAIKYAVTPLEEGADIIISA
                     RLAVDRVRITVADTGPGLNEPRPGAIHSTGVGLANIRDRLAQAYGQDHEFDARARAGG
                     GFEVVIEIPYQTEEQPREAA"
BASE COUNT         1677 a         3101 c         3054 g         1581 t
ORIGIN      
        1 ccgccggccg attgggcgag cagctcggcc ggggcgagcg ctgcgccggc cgcgacaagg
       61 ccggacgtgg tcagaaaagt gcggcggtcc atggcgatcc cctatcttga tacggagcct
      121 ttaatcgcgt gccggcgccc cgccacagac gttcgacgaa cgacacgcaa ccgcgccgaa
      181 tgtcgtccgt tttgctgctt caacgaggag acgcacatgg acatcaccaa ggcgctgcat
      241 accgatcatc agcagctcaa aaagctgatc cgcgcggtca acaagagcga ggatgccgag
      301 gagcggcggc ggctgttcac tgagttcgcc gagcttttga cgcgccattc gaaggccgag
      361 gaaaaagtcg tctatgacgc gctgatcgcg accggcgagg aagaagaaga ggaagccggg
      421 cacgaaggct ataccgagca tatgctcgcc gaaaccctgc tcaagaagct gcaggcgggc
      481 gccgacccga tgtccccgga atggtccgcc gaagccaagg tgatgatgga gatcctcgag
      541 catcacatcg aggaggaaga agatgaaatc ttcggccagg tgaaagagga ctttgacccg
      601 gcccagcgcc gggaaatggg cgatcgcttc gaggagcaga aggagcaggt aaaggcataa
      661 gcggcctgaa acccgggctc ggtacggccg cgcaagcgag gtcctcgcct agggctggat
      721 cggctgtccg ctacggccgg ccagctccgt gacatattgc caggcgaccc ggcccgaccg
      781 ggcgccgcgt tgggtcgccc agcgcagcgc atcctcggtg tcgaagggca gggcgtaagc
      841 cgccgcatag cgctcgatga tcgccagata ggttgcctgg tccatggcgt gaaagccgag
      901 tgtcaggccg aagcggtcgg cgagcgccag ccgatcgtcg actatgtcgc gcggattgat
      961 cgcgctttcc tgctcggcga tgtcgcgcgc gacgatgtgg cggcggttgg acgtgacgtg
     1021 cagccgggca ttggccgggc gcgcttccgc cccgccttcg agcagcgaac gcagcgcgcg
     1081 ggtctccggt ccgcccgcct cgaagccgat atcgtcgacg aacaggatga aggcgcgccc
     1141 cgcatcggcg atctgctcga aaagcaacgg cagcgtgtcg aggcgatccg ccgcgacatc
     1201 gaccagcgcc aggtcgagcc gctcggcgcg caccgcgccg accgtcgcct tgaccagcgc
     1261 cgatttgccg gttcccttcg ccccccatag cagcacatcg tgcgccgcat ggccgcgggc
     1321 gagccggcgc gcattgtcga gcaccgccgc tttctgcgca tcgatcccgg tcagcaagtc
     1381 gagcggcagc ggggcgaaat gccgtgcctc cgcaagcgct gcgccgcgcc acaaataggc
     1441 cgcggccgaa cgcggatcgg cggtcggcgg cgagggcggc gcgatccgtt ccagggcggc
     1501 ggcgatacgg gcaaggtctt cggacatttt cgaacgcata gcggcagaaa ctcccgcttt
     1561 ccaatcgggc atcagccgct agaaggcgcg cgcatgagcg acctgatcac gcctgtcatc
     1621 ctgtccggcg gctccggcac gcggctctgg ccgctttcct tgccggaaaa gcccaagcag
     1681 ctgctcgcta tcggcggcga gcagacgatg ctgcaggcga ctgcggcaag gacgctcgac
     1741 cggtcccgct tcgccgcgcc gatcgtggtc gccaacttgg cccatgcgga catgatcgag
     1801 gcgcagctga atgcgatcga ctgcgcgccc gccgcactgg tgctggagcc ggcgggtcgc
     1861 aacactgcgc ccgcaatcgc gcttgcagcg ctcgccgccg cgcccgatgc gctgctgctc
     1921 gtgatgccga gcgatcatgt gatcggccgc ccggacgcct ttcttgaggc ggtcgaccgc
     1981 gccacaccga tcgcgcgcga gggctggctg gtcacgttcg gcatcgagcc cgagcatccc
     2041 gaaaccggct tcggctatat caagctgggc gagcgcctcg cagacagcgt gcatcgggta
     2101 gagcggttcg tggagaagcc tccgctcgcc gacgcgcaac gcatgctgcg ggaaggcggc
     2161 tatgcctgga atggcggcat tttcatgttt cgcgccgaag cctatcttca ggcgcttgcc
     2221 acccacgcgc ccgagattct cgggccggtg cgcgccgcga tagccgccgc cgggcatgaa
     2281 ggcgcgcgca ttcatccgga cgccgaacgg ttttcggcgt gcccgtccga ttcgatcgac
     2341 tatgccgtga tggaaaaggc cgagcgcgtc gccgtggcgc ccgtcgccat ggcttggtcg
     2401 gacgtcggca gctgggacgc ggtgcacgca ctcggcccag gcgatgcgcg cagcaccgtc
     2461 gcgaccggcg acgtcatcgc gctcgacacc gacaattgcc ttatccgcag cgacgggccc
     2521 agggtcgcaa cactgggcgt cagcgacctg atcgttatcg cgacggggaa gcatgtcctc
     2581 gtgcttcccc gcggccgctc acaggaagtg aagcggctgg tcgaggagtt gaaggtgagg
     2641 gacgcagccg gttaggcccg ttcgttcctc agcctcgctc ggaacgaacg ggattccgtc
     2701 gttccgcgat caccggcgcg ggggtggcgg cggttcgatc gtagggccaa ggttgcgcat
     2761 cacctcgcgt gcatcgaagt cccgcacgct gcgcggcggc ccgttgaaca tcacgatttc
     2821 ggccgtcgct tcgtactgct cgatcgcgcg gacatcgacc gtgtcggccc agaagggatc
     2881 atagccccag gggtcccaag agcgccagcc gaacgagccg taatagcgcc agctcggtcc
     2941 ccaatagccc cagggccccg gcccgtacgg gcggggcgag gtctcgatgg tggtgcgctt
     3001 gtcggtgtcg cggtcgacca tcgtgaagct gtcatagccg tgctgcacgg tcagctcggc
     3061 tgcgcgaaaa agcagatagg tctcgactcg ctcgcgcgag gtgaactggt tgcccgtaaa
     3121 gctcacgcgg acgcggtttc gctcgatctg ctgctccgaa aagccgccgc tcacgccggt
     3181 gggcgcgccg agcggctgat agggggtagg cgttgcgcag ccggccagca cggcggcgga
     3241 agcgagcgcg ctcagggcaa agcgtttcat tttggcgacc tctggtgtct ctttgcctga
     3301 caacacgggg caagccgccc cgttccatcg ccccttgcca aatcggttgc agtcgaaaac
     3361 catctttcgt tcgatcggcg gcgatggcac tctccgaacc aataagacgc gaatcaggag
     3421 aaggaagatg gcgaccattg tgcagccgcg gcccgagttg cgggccgatc cgctcgatgt
     3481 cagccgcgcc gagctttacc gcgacgatgt ctggcaggaa ccgtttcgcc ggctgcgcgc
     3541 ggaagcgccc gtctattatt gcgagcacag ctccttcggg ccttattggt cggtctcgac
     3601 ctacaagccg atcgtgcatg tcgaggcact gcccgacatt ttctcgtccc agccgtcgat
     3661 cacgctcggc gacccgatcg agggcgagcc gcacctgccg atgttcatcg cgatggaccg
     3721 gcccaagcac accgaccagc ggcgcactgt cgctccggca ttcacgccga gcgaaatcac
     3781 gcgcatgggc gaggatgtgc gccggcggac ggtggagatc ctcgacgatc ttccctgggg
     3841 agagaccttc gactgggtcg atcgcgtctc gatcgagctg acgacgcaga tgctcgcgat
     3901 ccttttcgac tttccctggg aggaccgccg caagctcact ttctggtccg actgggccgg
     3961 cgatatcgag ctcttccaca atcccgagac gcgccaggag cggctgatgc acctctacga
     4021 gtgcgccagc tatttcaagc agctctgggc cgaaaaggtc gacaagccgc tcacgcccga
     4081 cctcatctcg atgatggtgc attccgaggc gatgagccac atggacgacc atgagtttct
     4141 cggcaatctc atcctgctga tcgtcggagg caacgacacc acgcgcaatt cgatgtccgg
     4201 cgtcgtctat ggcctcgaca aattccccga cgagcggtcg aagctggagc aaaatccgga
     4261 gctcattgcg aacgcggtgc aggaaataat ccgctggcag acgccgctcg cccatatgcg
     4321 ccgcaccgcg actcaggata ccgagctgga aggccagaag atcaaggcgg gcgacaagct
     4381 tgcgctctgg tacatctccg ccaatcgcga cgagaccgtg ttcgaaaatc ccgacaagat
     4441 gatcgtcgat cggcccaatg cgcggcggca tctcgctttc ggctatggca ttcaccgctg
     4501 cgtcggcgcg cggctcgccg agttgcagat cggcatcctg ctcgaggaaa tggcgaagcg
     4561 ccggatgcgc gtcgaagtgg tcgaggagcc ggtgcgggtg agcgcctgct tcgtgcacgg
     4621 ctaccggaaa atgccggtcc agatcagccg ctactgaaac cggctgctcc cgcgcaccgt
     4681 atttgggtat gcgattgcgg gagactggac acatgatcga acgtcgaatg atgcttgcat
     4741 caggggctgc ggcggttgcg ctcgcctggc tgggccagcg cgcggatgca gccgcgccgg
     4801 ctgcggaccc gcgcttccgg ctgaccccgg ccgagtggcg caagcggctg cgcggcgacg
     4861 cttatgccgt gctgcgcgag gaagcgaccg agcggccctt caccagtccg ttgctgaagg
     4921 agcaccgcgc cggcgttttc gtatgcggag gatgcgggct gccggtcttc tcgtccggga
     4981 ccaaattcga cagcggcacc ggctggccca gcttctgggc agctctgccg ggcgcgacgg
     5041 ccactgccac cgacacgaag ctcggcttcg agcgcgtcga ggagcattgc cgccgctgcg
     5101 gcggccatct gggccacatc ttcgacgatg gccccaagcc gaccggcaag cggcactgca
     5161 tcaacggcct ggcgctgaaa ttcgtgccgg gcaaggcata gcgcgcaacg ctagagctgc
     5221 gtgccggcga tgctgccgat tgcgtaagtg aagcccattg ccgctgctcc tcccagagcc
     5281 atccggagca ccgacggcag ccatggcgtt ctgccgagcc gcgcggatat ggctccgctc
     5341 aggcccagcg cggccgcaac cgcagcgccc gagacccaaa tctcgatcgc gcggggcgag
     5401 accagcattg cgaccagcgg aatcagcccg ccaatcgtga acgagaccat ggacgcgacc
     5461 gcggcctgcc aaggactgac gatcgccgcg gggtcgattc cgagctcgac gcgtgaaagg
     5521 gccgaaagcg gactccgctg ctgcaattca tccgcagcct cacgcgcgag gttggggctc
     5581 atcccgcgtt cttcgagaag ctcggcgagc cgccgtagct cgtaggaagg atccgcatcg
     5641 atcaattcgc gttcgcggca gatttcggcc tgttccacat cgcgctgatt ggacacggag
     5701 acatattctc cgaccgccat tgacatggcg cctgcggcga tcgcggcaat gccggccaga
     5761 acgatggtac tatgggacgc attcgcgccg gccacgccga agatcaggct ggaggtcgag
     5821 acgattccgt cattggcgcc gagcacgccg gcgcgcagcc aattcagctt gctcgcaagc
     5881 gttacgcctt tggtcgccgg tgcgggctcg tccatgctgc tccttatgtc ccgacagcat
     5941 gggagcttac gcgatcatcg ccgcccgcgc agcctcggtc agcgccttca ttgcgtgtcg
     6001 ataagggccg gggccatggc tgatccgcgc gaggcccagt tcggcgagcc gcttcgtgct
     6061 cggcatgccc gggaacatca tcgcgttgac cggcagcggc gagctttcgc agacgcgcgc
     6121 gagcaggcgc tcgtcggcga gcccgggcac gaagaagccg ctcgcgccgg catcggcgta
     6181 agcgtgggcg cgttccagcg cctgatcgac ggccgcggcg tcatgcgctt ccggtccggc
     6241 cttcaggaaa atgtcggtgc gggcgttgat gaaggcgggg atgccggcgc gctcagcctc
     6301 gcgccgcagc gcctcgatcc gcgccgcctg caccttgacc gggtgcagcc cttcgccgcc
     6361 gacgacctgg tcctcgaaat tacagccgat cgcgccggtg ctcagcacca gggcgaagtt
     6421 ggcggccagc tccggcggct cgaccgcata gccgccttcg aaatccagcg tgaccggcag
     6481 gtccaccgcc tttacgatac gctccgcatt cgcgagcgcc agatcgaacg gcagcgcttc
     6541 ggcgtccgaa aagccgtttg ccgcggcaac cgaccaactc cccgtcgcga tggctttcgc
     6601 tcccgcctcc gccacagact tggccgagcc agggtcccac gcgttgaaca ggatcaccgg
     6661 gctacccggt atgtgcaatg cggcaaacgc gcgcgccttt tccccctgag tcatggcttt
     6721 cctttcctcg atgcaggaca tgattcgggc cagtcttcat cgcccttcat cagcatcagt
     6781 tcgccggagc gtccgtcttt ggtatcgcgg ccgaatagcc aggacattcc actcggtgaa
     6841 aaggccgcgc cgatctccgt tccgttgacg ttgatctccg gccccagccg cacgcgcggg
     6901 ctccagccct tcgcggtccg ttcgctccga taataggcgt cggcaccgct cagcagcatc
     6961 cagcggccat cgggcgaagg caacggctca tattcgtcat ccgccgtatt cagtgcggcg
     7021 ccggcattct ccactgtcca tttgccgtcc cggccctgtc gcgcgcgcca gatatccgtc
     7081 ttgccgaatc cgccaggacg atccgagccg aaatagagcc agccgtcgcg atccaaccgc
     7141 ggaaaccact cctggccgct ggagttgacc ggctccggta gccgctccgg cttgttccag
     7201 cgcccgtctt tcccacgcgt cgcgcgccag atgtccagat cgctcctgtg gacgccatcg
     7261 gtagagcggg tggagataaa ccagagcgtg cgcccatccg ggctgaacca cggatcggct
     7321 tcgacgccat cgccggcgat cggcgcatcc accggctcgg tccagccctc aggcccgcaa
     7381 tggctgagct tgatccgcca gccgcgaaat ttgggcgtcg atcgcacgaa ccagagatcg
     7441 ccggtccacg gatcgaacgc cgggtgggat tcgaattggt ccgaggaaat gggcggggtc
     7501 gaccagatgg cgggcgcggc cgccgcgaga agcagcgccg cgccgatcat cagtgcacga
     7561 agcgcgcgac cacgtcgcga tagctgcggc tgaccttcac ctgcgcgcct gaatccagca
     7621 ccaggaagca ttcgccattg gtgtgcggct tcacctgctt gacgagatcg agattgacga
     7681 tcgtcgagcg atgcacgcgc tggaagcggc gcggatcgag ccgcttttcc agatccttca
     7741 ttgtctcgcg gaggatcagc gtgttgtcgg cggtgtagat gcacatgtaa tcgcccgccg
     7801 cgtcgatccg ctcgatcgtg tcgacatcga cccggaaaat ctgcccgcgg tccttgatgt
     7861 tgatcatctt ctcaaagcga ctggccgacg gcgcctcggg cgattcgctg atttcggcag
     7921 ccgcctcggg cgcgacttcg gccagcacct cgcgcaaccg gtcgacttcc tcggcgccgc
     7981 gtttttcggc gatccgctga cggacccggt cgagcgtcgc cgccagccgc tcttcctcga
     8041 ccggcttcat cagataatcg accgcctgtg cctcgaaggc gcggatcgcg tggtccgaat
     8101 aggcggtcac gaacacgaac aaaggcggct cgatgtccat caggccctgg acgacggaga
     8161 acccgtcaaa gcctggcatt tggatgtcga gaaaaacgag atcgggcttg ttggtcttga
     8221 tggagcggat cgcttcccgc ccattggagc aggtgtcgac gatctcgaca tcctcgtgcg
     8281 gttcgagccg gagctggagg ccctgaatgg ccagcggctc atcgtcgacg aggatcgttc
     8341 tgatgatcat gcggcttccc ttggttgttc ctcggtttgg tacggaattt cgatgacgac
     8401 ctcgaatccg ccccccgcac gcgctctcgc gtcgaactca tgatcctggc cataggcctg
     8461 cgccagtctg tcccggatat tcgccagacc gacgccagtg gaatgaatgg cccctggccg
     8521 cggctcgttc aagcccggcc cggtatcggc gaccgtaatc cgcacgcgat cgaccgccag
     8581 ccgggcgctg atgatgatgt ctgccccttc ctcgagcggc gtcacggcat atttgatcgc
     8641 attctcgacg agcggctgca gcagcagcga cggcaagcgc gccttcagca ccaccggatc
     8701 gatctcgaag atcgggcgca gccgctcctc gaagcgcatc ttctcgatct cgagatacag
     8761 tttcagcgtc tcgatctcct gctccagcgt cacttggccg agcggctcgt tgaccagcgt
     8821 atagcgcaga aaggacgaca ggcgcgacag catcgcgttc gctcgctcgg tctgtttgag
     8881 gaggacgagc gtcgaaatgg aattgagcgt gttgaacagg aagtgcgggt tgagctgata
     8941 gcgcagcatc gcgagctgcg cggtggaggc ctggctctcc agcgcgcgca attgatcggc
     9001 ctgtttttcg acaaccagga agaaattgat cgcgtaataa agcgccgacc aggcgccgat
     9061 caccacgaaa tcgaggaaga tcgtgccgag gaacaggctg atctggaaag cctcgcccgg
     9121 ccgctggacg gtgttgaaga tccaggcgtc gatcagcgaa taaatgcccg ccgccgcgcc
     9181 gatcccggca atcgagccga gccaggtcac cacgggccgg cgccgaatca gctcgcgata
     9241 gagcgcgccg agcacgagcg tcagcgaata gccggtggcg gtcgataccg cgaccggcac
     9301 gaggaaggcg agggtcaggc cattggcgaa cccggacagc gcgcgcagca ggaaatagcc
     9361 ggcccagccc gcggtctgca ggttccagaa ggcgcggttc ttgtcgtcaa aga
//
LOCUS       DASQVK010000455         2003 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_409799,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000455 DASQVK010000000
VERSION     DASQVK010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_409799"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..499)
                     /locus_tag="VE567_09920"
     CDS             complement(<1..499)
                     /locus_tag="VE567_09920"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: protein motif:HMM:NF014575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070043 - rRNA
                     (guanine-N7-)-methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HYZ49196.1"
                     /translation="MSKARIPDLAADRSCALALTPVSRETSARLDRFVELLLTWQRTT
                     NLIAPSTAPHLWTRHVADSLQLLDLAPDARVWIDLGSGAGFPGLVLACALADRPRSMV
                     HLVESNAKKAAFLREATRVTAAPVSIHAKRLENIVESFPDSVDAVTARALAPLRLLLD
                     QSFPLL"
     gene            complement(537..>2003)
                     /gene="mnmG"
                     /locus_tag="VE567_09925"
     CDS             complement(537..>2003)
                     /gene="mnmG"
                     /locus_tag="VE567_09925"
                     /inference="COORDINATES: protein motif:HMM:TIGR00136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HYZ49197.1"
                     /translation="VDGRELRAGAVVITTGTFLRGLIHIGESQIPAGRVGEAPAVGLS
                     LTLERIGFALGRLKTGTPPRLDGRTIDWARVEMQPGDDPPEPFSALTERIETPQIQCG
                     ITRTNQTTHEIIRENVHRSPMYSGQIASRGPRYCPSIEDKIVRFGERDGHQIFLEPEG
                     LEDPTVYPNGISTSLPEDVQLAVVASIPGLERARMTRPGYAIEYDHVDPRELKPTLET
                     RRVAGLFLAGQINGTTGYEEAAAQGLVAGLNAAARAGGGGEIVFDRAEGYLGVMIDDL
                     VTRGVTEPYRMFTSRAEYRLTLRADNADQRLTTKGISLGCVGAARARHHGAKMAALAE
                     VRDFARSVSVTPNEAARHGLLLNRDGQRRTAFELLSHPTIDVAKLAGIWPQLGDLSPN
                     IAQQLEIEAKYAVYMQRQAADVEAYRRDESFELPSEFDYATLPGLSNEVRQKLEEIRP
                     RTIGQAGRIDGITPAALTLLVAHLRRKGRTRGPVSAAE"
BASE COUNT          335 a          646 c          660 g          362 t
ORIGIN      
        1 tcaatagcgg aaatgattga tcgagtagca atcgtagcgg cgccagcgcg cgggcggtga
       61 cagcatctac tgagtcgggg aagctttcca cgatattctc aaggcgcttc gcgtgaatgc
      121 taacgggtgc cgccgtcacg cgcgtcgcct cgcgcaggaa ggctgccttc ttggcattgc
      181 tctcgaccag atgcaccatc gatcgtggcc tgtccgccag cgcacaggcc aggaccaatc
      241 cgggaaagcc ggcaccagat ccgagatcga tccacacgcg tgcatccggt gcgagatcga
      301 ggagctggag cgaatcggca acgtggcgcg tccacaggtg cggtgccgtc gatggcgcga
      361 tcaggttggt ggtccgctgc cacgtcaaca ggagttcgac aaatcggtcg aggcgcgccg
      421 atgtttcacg tgaaacagga gtgagggcca gcgcgcagga gcgatcggca gcaaggtccg
      481 gtatgcgcgc tttgctcatc ggcgagcatt ctgctgccgc cgcggtggcc tccaattcat
      541 tccgctgcgc tcaccggccc gcgcgtacga cccttccggc gcagatgcgc gaccagcagc
      601 gtcagcgccg ccggcgtgat gccgtcgata cggccagcct gaccgatagt gcggggccgt
      661 atctcttcga gcttctgccg cacttcattg gaaagccccg gcagcgtggc gtaatcgaac
      721 tcggaaggaa gctcgaagct ttcgtcgcgc cgataggctt ccacgtccgc ggcctgacgc
      781 tgcatgtaaa cggcgtattt ggcctcgatc tcgagttgct gggcaatgtt gggggaaaga
      841 tcgccgagct gtggccagat cccggcgagc ttggcgacgt cgatagtggg atgcgacagc
      901 agttcgaacg ccgtgcgccg ctggccgtcc cggttgagca aaagtccatg ccgcgcagcc
      961 tcgttcggcg tcaccgaaac cgagcgcgcg aaatcgcgga cttcggcgag ggcggccatt
     1021 ttggcgccgt gatgccgtgc ccgggccgca ccgacacagc cgagcgaaat tcctttcgtg
     1081 gtcaggcgct ggtcggcatt gtcggcgcgc agcgtgaggc gatattccgc gcgcgaagtg
     1141 aacatccgat agggttcggt gacgccgcgc gtgaccagat catcgatcat gacgccgaga
     1201 tagccttccg cccggtcgaa cacgatctcc ccgcccccgc cggctctggc cgcggcattg
     1261 agcccggcga ccagcccctg cgcggccgct tcctcgtaac cggtcgttcc gttgatctgc
     1321 ccggccagga aaaggccggc cacccgcctc gtttccagag tcggtttgag ctcacgcgga
     1381 tcgacgtggt cgtattcgat cgcgtagccg gggcgggtca tccgcgccct ctctagcccc
     1441 gggatgctag ccaccacggc gagttggacg tcttcgggca gggacgtcga gatgccgttc
     1501 gggtagacgg ttgggtcctc gagcccttcg ggctcaagaa agatctggtg gccgtcacgc
     1561 tcgccgaagc ggacgatctt gtcttcaatc gaagggcagt agcgaggccc ccggctggcg
     1621 atctgcccgg aatacatggg cgagcgatgg acattctcgc ggatgatctc gtgcgtcgtt
     1681 tggttcgtcc gggtgatgcc gcactgaatt tgcggcgtct cgatccgctc cgtcagcgcc
     1741 gagaatggct ccggcggatc gtcgccgggc tgcatttcga cccgcgccca atcgatggtg
     1801 cggccgtcaa gccgcggcgg cgtaccagtc ttgagccggc ccagcgcaaa tccgatccgt
     1861 tcgagcgtca gcgacagccc gaccgccggc gcctcgccga cgcgcccggc cgggatctgg
     1921 ctttcgccta tgtggataag gccgcgcagg aacgtgcccg tcgtgatcac cacggcccct
     1981 gccctgagtt ctctgccgtc gac
//
LOCUS       DASQVK010000456         2554 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_126197,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000456 DASQVK010000000
VERSION     DASQVK010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2554
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126197"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            37..504
                     /locus_tag="VE567_09930"
     CDS             37..504
                     /locus_tag="VE567_09930"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HYZ49198.1"
                     /translation="MSIAPVVKSVTVPLPPERAFEIFTRDIGRWWKPGANLAKGDFAD
                     IVIEPHAGGRWFEKDAEGAETQWGKVIAFDPPHRLLLGWQLTAEFKFDPDILTEVEVS
                     FTPEGERETLVTLEHRQLERFGDAAAKVAASVTDGWGTMIARYADFAKEKIDG"
     gene            497..1162
                     /locus_tag="VE567_09935"
     CDS             497..1162
                     /locus_tag="VE567_09935"
                     /inference="COORDINATES: protein motif:HMM:NF024809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HYZ49199.1"
                     /translation="MAEFVIHGVPGSPYVRAPLVALEEKGAAWKLAALPFGGHKAPEY
                     RAIHPFQKIPAMDHGDFRLYETTAMLRYIDNAIDGPALVPADPKLAARMDQVMSVTLC
                     YVTPTVSATLSFHRMVAPVLGLPVDEQAIASGIGPARDTLAEVARLLGSQPFMAGEQV
                     SLADCMLASHISFLREYDEGRMLLAELPGLSAWIERMEARPSMTATTWDRLREMTGQK
                     LAA"
     gene            complement(1216..>2554)
                     /gene="gorA"
                     /locus_tag="VE567_09940"
     CDS             complement(1216..>2554)
                     /gene="gorA"
                     /locus_tag="VE567_09940"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017499594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004362 - glutathione-disulfide reductase
                     (NADP) activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HYZ49200.1"
                     /translation="DRDVDLFVVGAGSGGVRAARIAAGYGASVMVAEEYRVGGTCVIR
                     GCVPKKLLVYGAHFAEDLADARRFGWDVPHCAFDWPTLRDNVLAEVDRLNKAYTTTLE
                     SNGVEIILERATVTGPHGVKLASGREVTARYILIATGAWPALPDFPGVEHAITSNEVF
                     HLEKLPARVLIAGGGYIANEFAGIFHELGSDVTIVNRTDVILRGYDESIRDRLLQISM
                     TKGIKFQFNSRFQSIEKTSEGLHVVFDGCEPLDVDAVMFATGREPHTKGLGLEEAGVK
                     LDAKGAVVVDEDSKSSVDSVYAVGDVTNRVQLTPVAIREGQAFADTVFGNRPWRVDYH
                     CIPSAVFSHPPIAGVGLTESQAKQKYGAVRVYSSDFRPMKNVLANRNERALYKMVCQS
                     ETDRILGLHMIGPDAPEILQAAAVAVKAGLTKKAFDDTVALHPSMAEELVLLR"
BASE COUNT          463 a          806 c          834 g          451 t
ORIGIN      
        1 ctatgccgaa cgcatcgcag aagaggaaaa gaagggatga gcattgctcc cgtcgtgaag
       61 tccgtcacgg tgccgctgcc gcccgaacgg gcgttcgaga tcttcacgcg cgatatcggt
      121 cgctggtgga agcccggcgc gaacctcgcc aaaggcgatt ttgccgatat cgtgatcgaa
      181 ccccatgcgg gcggccgctg gttcgagaag gatgccgaag gcgcagagac gcagtggggc
      241 aaggtgatcg ccttcgatcc gccgcaccgg ttgctgcttg gctggcagct caccgccgag
      301 ttcaagttcg atcccgacat cctgaccgag gtcgaagtca gcttcacgcc ggagggcgag
      361 cgcgagacgc tggtcacgct ggagcaccgg caactcgaac ggtttggcga tgcggcggcc
      421 aaggtcgcag cgtccgtcac cgatggttgg ggcacgatga tcgcccgtta cgccgatttt
      481 gcaaaggaga agatcgatgg ctgagttcgt gattcacgga gttcccggca gcccctatgt
      541 gcgggcgccg ctcgtcgcgc tggaggaaaa aggcgcagcc tggaagctgg cggcgctgcc
      601 gttcggcggg cacaaggcac ccgagtatcg cgccatccac ccgttccaga agatccccgc
      661 gatggatcat ggcgatttcc ggctttacga gacgaccgcg atgctgcgct acatcgacaa
      721 cgccatcgat gggccggcgc tggtgcctgc cgacccgaag ctcgccgcgc ggatggacca
      781 agtgatgagc gtcacgcttt gctatgtcac gccgacggtg agtgcgacgt tgagcttcca
      841 tcgcatggtc gcgccggtgc tgggcctgcc ggtcgacgag caagcgatcg cgtcggggat
      901 cggtccggcg cgcgatacgc tcgcggaagt cgcacgtctg ctcggaagcc agccgttcat
      961 ggccggcgag caggtgtcgc tcgccgactg catgctcgcc tcgcacatct cgttcctgcg
     1021 agaatatgac gaagggcgga tgctgctcgc cgaactgccg ggcctcagcg cctggatcga
     1081 gcgcatggaa gcacgcccga gcatgaccgc aacgacgtgg gaccggctac gggaaatgac
     1141 cgggcagaaa ttggcggcct aaccgctcat tgggccgtca tcccggtcaa ctccgggatg
     1201 acggccctaa gtttgtcagc gcagcagcac cagctcctcc gccatgctcg gatggagcgc
     1261 gacggtgtcg tcaaaggcct ttttggtgag gccggccttt accgcgactg cggcggcctg
     1321 caggatttcc ggagcatcgg ggccgatcat gtgcaggccc aggatgcgat cagtctcgga
     1381 ctggcaaacc atcttgtaga gcgcacgctc gttgcggttc gcgagcacat tcttcatcgg
     1441 ccggaagtcc gacgaataga cgcgcaccgc gccatatttc tgcttcgcct ggctctcggt
     1501 gaggccgacg ccggcgatcg gcgggtggct gaacaccgcc gagggaatgc agtgataatc
     1561 cacgcgccac ggcctgttgc cgaacaccgt gtcggcaaaa gcctggccct cgcggatggc
     1621 gacgggggtg agctggaccc ggttggtcac gtcgccgacc gcatagacgc tgtcgacgct
     1681 cgatttgctg tcttcatcca cgacaaccgc gcccttggcg tcgagcttca cgcccgcttc
     1741 ctcgagcccc aggcccttgg tgtgcggctc gcggccagtg gcgaacatca ccgcgtcgac
     1801 gtccagcggt tcgcacccgt cgaacacgac gtgcaggcct tcgcttgtct tctcaatgct
     1861 ctggaagcgc gagttgaact ggaatttaat gcctttggtc atcgagatct ggagcagccg
     1921 gtcgcggatg ctttcgtcat agccgcgcag gatcacatcg gtacggttga cgatcgtcac
     1981 gtcggagccg agctcgtgga aaatgccggc aaactcgttg gcgatatagc cgccgccggc
     2041 gatcagcacg cgcgcgggga gtttctccag atggaagact tcgttcgacg tgattgcatg
     2101 ctccacgccg gggaagtccg gtaatgctgg ccaggcgccg gttgcgatca ggatatagcg
     2161 tgcggtgact tcgcggcccg aggcgagctt caccccatgt gggccggtga cggtcgcccg
     2221 ctcaagaatg atctcgacgc cattgctctc aagcgtcgtc gtataggcct tgttgaggcg
     2281 atcgacttcg gcaagcacat tgtcccggag cgtcggccaa tcgaaggcgc aatgcggcac
     2341 gtcccagccg aagcggcgcg catcggccaa atcctcggca aaatgtgcgc catagacgag
     2401 cagttttttg ggcacgcagc cgcggatcac gcaggtgccg ccgacccgat actcctcggc
     2461 caccatgacg ctcgcgccgt agccagccgc gatgcgcgcc gcgcgcacgc cgcccgagcc
     2521 cgccccgacg acgaaaagat cgacgtcgcg gtca
//
LOCUS       DASQVK010000457         4427 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_220463,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000457 DASQVK010000000
VERSION     DASQVK010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4427)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4427)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4427
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_220463"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            134..703
                     /locus_tag="VE567_09945"
     CDS             134..703
                     /locus_tag="VE567_09945"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HYZ49201.1"
                     /translation="MKKLVVSSLVALFAAGSAQAAPSGGRIEAFVGYDNNKFSAADFN
                     VDASTDGVVFGVGLGYDLAVSSGVALGIDLEASDSSAELSASEGGISAKASAERDLYA
                     GGRITFAASDRVNLYVKGGYTNARLKASVTGGGLDESVSGTVDGFRVGGGVQFMISKS
                     VYLGGEYRYSNYEGDYSRNQVVGTLGFRF"
     gene            777..1784
                     /locus_tag="VE567_09950"
     CDS             777..1784
                     /locus_tag="VE567_09950"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014075363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HYZ49202.1"
                     /translation="MEALAPMEAKLVEALPEGSGWQFEPKWDGFRCIAMRDGDGLELV
                     SKSGKPLARYFPEVAAMLAAIPEERFVLDGELIIPVGDCLSFEALQLRLHPAESRVRK
                     LAAETPAQIMLFDLLALDEPLLAAEPLSERRAALERFHARHGSPSLLLSPATTDCEQA
                     KAWLARSGGALDGVVAKRLDEPYRPGERAMLKVKQIRSADCVVGGFRYASGKREVGSL
                     LLGLFGDDGKLHHVGFCPPPGDKAELTARLEAMVAPPGFTGDAPGGPSRWSTERSGEW
                     QPVRWELIAEVKYDQVTGCRFRHATRFLRWRPDKAPEQCRMDQLGHELRPAELANVIQ
                     S"
     gene            complement(1873..3357)
                     /gene="gatB"
                     /locus_tag="VE567_09955"
     CDS             complement(1873..3357)
                     /gene="gatB"
                     /locus_tag="VE567_09955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019370561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HYZ49203.1"
                     /translation="MATAASSSYRVQGATGEWEVVIGLEVHAQITATKSKLFSGAATA
                     FGAEPNAQVSLIDAAMPGMLPVPNRECIRQAVRTGMALNAAINRWSRFDRKNYFYADL
                     PQGYQISQLYHPLVGEGEVIVEPAEGEEKTVGIERIHVEQDAGKMLHDQHPTRSYVDL
                     NRSGVALMEIVSKPDMRSPAEAGAYLRKLRSILRYVGSCDGNMEEGSMRADVNVSVRK
                     PGEPFGTRTETKNVNSVRFVMQAIEYEASRQVDVLESGGRVVQETRLFDPDRGETRSM
                     RSKEEAHDYRYFPDPDLLPLELDDAFVAECKASLPELPDAKRHRYETELGISAYNAAV
                     LTAEVETARWFEALLAESGEKVQGKAASNWVISDLFGALNRLGLSIEQSPVSPKQGAE
                     LLALVADGTLSGTLAKQVFEIMLETREDPAAIVEARGLKQTSDTGAIEAEIAKVLAAN
                     ADKVEQYKAGKQALLGFFVGQTMKAMGGKANPQVVNELLKKALG"
     gene            3540..>4427
                     /locus_tag="VE567_09960"
     CDS             3540..>4427
                     /locus_tag="VE567_09960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49204.1"
                     /translation="MRALWLVFHGSLDHADGEAANAAIAIARGDGMADTFARGSGASA
                     HFMPSMTLVAGAVYAVLGIRTAAAELVLATLSVGLSLVSAWLWYRIVQMIGIPRAAAL
                     TGLTLFCFLPLSISLEVIDFRAWEGALAATLGALALLPILNRDRADRPWVRSLWLPSL
                     LAAINFFVNPAMGLAVFGALALLLLRRFAARQWPQAIAIAALCLVVVLTPWAVRNELV
                     LGRFIPLRGNAGLELALANHPAAAASGDQRQIFVERLHEIHPLESQPAFDRMMRMGGE
                     IPYAAALGKTALQWIAEHPR"
BASE COUNT          694 a         1412 c         1468 g          853 t
ORIGIN      
        1 tggaccgaat actgttgcga aatcgcaacg gcttcgtaga tttttggaca gaccgttatt
       61 tctataagac agagcctgtt ctgtcgacta acggcgcccc ccgtgcattc ctgcacaaac
      121 gggggaccat tccatgaaga agttggttgt aagttcgctc gtcgcgttgt tcgccgcggg
      181 atcggcgcag gcggcaccgt ccggtggccg gatcgaggcg ttcgtcggat atgacaacaa
      241 taaattcagc gccgcggatt tcaacgtgga cgccagcacc gatggggtcg tgttcggcgt
      301 cggcctgggc tacgatctgg ccgtgagctc cggcgtggcg ctgggcattg atctcgaggc
      361 gagtgacagt tccgccgagc tgagtgcaag cgaaggcggg atctccgcca aagcctcagc
      421 cgagcgcgac ctttacgcgg gcggccggat cacgtttgca gcatccgacc gggtcaacct
      481 ctacgtgaaa ggcggctaca ccaacgcccg cctcaaggcc agcgtgacgg gcggcggctt
      541 ggacgagagc gtgagcggca ctgtcgacgg tttccgcgtc ggcgggggcg tccagttcat
      601 gatcagcaag agcgtctatc tgggcggcga gtatcgctat tccaactatg aaggcgatta
      661 ttcgcgcaac caggtggtcg gcactctcgg cttccgcttt tgacatattg ggggagccgc
      721 gcgccggctc cccctccgct ttggctaccg ctgcgacggt cgcgcgttgg ggcgggatgg
      781 aagccctggc gccgatggaa gcgaagctgg tcgaagccct gccggagggg tcgggctggc
      841 agttcgagcc caaatgggat gggtttcgct gcatcgcgat gcgcgacgga gacggacttg
      901 agctggtctc caaatcgggc aagccgctcg cgcgctattt tccggaagtg gcggcgatgc
      961 ttgctgcgat cccggaggag cggttcgtcc tcgacggcga gctgatcatc ccggtcggcg
     1021 actgcctgtc tttcgaagcg ctgcagttgc ggctgcatcc ggccgaaagc cgcgtccgca
     1081 agctggctgc ggaaacgccc gcgcagatca tgctgttcga tctgttggcg ctggacgagc
     1141 cgttgctcgc ggccgagccg ctgtccgagc gacgcgcggc gctggagcga ttccatgctc
     1201 gccacggttc gccctcgctg ctgctgtctc cagcgacgac ggattgcgag caggcgaagg
     1261 cgtggctcgc ccgctcaggt ggggcgctcg atggcgtggt cgcgaaacgg ctggacgagc
     1321 cctatcggcc gggcgaacgg gcgatgctga aggtgaagca gatccgctct gccgactgtg
     1381 tggtcggcgg ctttcgctat gcgtccggca agcgggaggt cggctcactg ctgctcgggc
     1441 tgttcggcga cgacggcaag ctgcaccatg tcggcttctg cccaccgcct ggcgacaagg
     1501 ccgagctgac agcgcggctg gaagcgatgg tcgcgccgcc cggcttcacc ggggacgcgc
     1561 caggcggccc cagccgctgg agcaccgaac gatcgggcga gtggcagccc gtccgctggg
     1621 agctgatcgc ggaggtcaag tacgaccagg tcaccggctg ccgcttccgc catgccacgc
     1681 gcttcctgcg ctggcggccc gacaaggcac cggagcagtg ccgcatggac cagctcggtc
     1741 atgagttgag gccggcggag ctcgccaacg tcatccaaag ctgatgggct cgctttaagc
     1801 gcagtcgaaa agcatcaact cattgcctga gcgtttctcg acctcgctcg aaacgaacgg
     1861 gactgttttg tgtcagccta gcgccttctt cagcagctcg ttcaccacct gcgggttggc
     1921 cttgccgccc attgctttca tcgtctggcc aacgaaaaag ccgagtaggg cctgcttgcc
     1981 cgccttgtac tgttcgacct tgtcggcatt ggcggcgagg accttggcga tttccgcttc
     2041 gatcgcaccg gtgtcgctgg tctgcttgag cccgcgggcc tcgacgatgg ctgccgggtc
     2101 ctctcgggtt tccagcatga tctcgaagac ctgtttggcg agcgtgcctg acaacgtgcc
     2161 gtcggcgaca agggccagca gctcggcgcc ttgcttcggg ctgaccgggc tttgctcgat
     2221 cgacaggccg aggcggttga gtgcgccgaa caggtcggaa atcacccaat tggacgctgc
     2281 cttgccctgg accttttcgc cggattcggc gagcagcgct tcgaaccagc gcgcggtttc
     2341 tacttcggcc gtcagcaccg cggcattgta ggcgctgatc cccagctccg tctcgtagcg
     2401 atgccgcttc gcgtcgggaa gctcgggcag gctggctttg cactcggcga cgaacgcatc
     2461 gtcgagttcc agcggcagca ggtcggggtc cgggaaataa cggtaatcat gcgcctcttc
     2521 cttggagcgc atcgagcgcg tctcgccccg atccggatcg aacagccgcg tttcctgcac
     2581 gaccctgccg cccgattcga gcacatcgac ctggcggctc gcctcgtatt cgatcgcctg
     2641 catgacgaag cgtacggagt tgacgttctt cgtttcggtg cgggtgccga aaggctcgcc
     2701 gggcttgcga accgacacgt tcacgtcggc gcgcatcgag ccttcttcca tattgccgtc
     2761 gcacgagcca acatagcgta ggatcgagcg cagcttgcgc aaataggcgc cggcctccgc
     2821 gggggagcgc atgtcgggct tcgatacgat ctccatcagc gccacgcccg agcgattgag
     2881 atcgacatag gagcgcgtcg ggtgctggtc gtgcagcatc ttgccggcat cctgctcgac
     2941 atggatgcgc tcgatgccga ccgtcttttc ttcgccttcg gcgggctcga cgatcacttc
     3001 cccttcgccg accagcggat gatagagctg cgagatctgg tagccctgcg gcagatcggc
     3061 gtagaaataa ttcttccgat cgaaccgcga ccagcgattg atagccgcat tcagcgccat
     3121 gccggtgcgc accgcctggc ggatgcattc gcggttggga acgggcagca tgccgggcat
     3181 cgccgcgtcg atcagcgata cttgcgcatt gggctcggcg ccgaacgccg tcgcagcgcc
     3241 ggagaaaagc ttggacttgg tcgcggtgat ctgggcgtgg acctcgaggc cgatcacgac
     3301 ttcccattcg ccggtcgcgc cctggacgcg atagctgctc gatgctgcgg ttgccatgtc
     3361 cgcctcttgc gcaaccaagg ccgatcaagc aagtttttgc gatcgcggca gccgccgcag
     3421 ctggcgaaga aatgccgaag ggggacaagc ttatggcgcg gccgagtgct cctccaggcc
     3481 gctggcgcga aacggtcggt cggcacggcc cggttcttct cctgtcgctg ggtgcgctta
     3541 tgcgcgctct gtggctggtc ttccacggca gcctcgatca cgccgatggc gaagcggcca
     3601 atgccgcgat cgcgatcgcg cgaggggacg gaatggccga tacctttgct cgcggcagcg
     3661 gcgcgagcgc gcatttcatg ccttcgatga cgctggtcgc cggtgcggta tacgcagtcc
     3721 tgggcatccg gaccgccgcg gcagagcttg tgcttgcaac gttgagcgtc gggctcagcc
     3781 tggtttcggc ctggctctgg taccggatcg tgcagatgat cggtatcccg cgcgcggctg
     3841 ccctgaccgg tcttacgcta ttctgcttcc tgccgctcag catcagcttg gaagtgatcg
     3901 acttccgcgc ctgggaaggt gcgctggccg cgaccctggg cgcgctcgcc ctgctgccga
     3961 tcctcaatcg cgaccgggcg gaccgcccgt gggtccgctc gctatggctg ccgtcgctgt
     4021 tggccgcgat caattttttc gtgaacccgg cgatgggcct cgccgtcttc ggcgcgctcg
     4081 cgctgttgct gctgcgccga ttcgcggccc gccaatggcc gcaggcaatc gcaatcgcgg
     4141 ccctctgcct ggtcgtcgtc ctgacaccct gggcggtgcg caacgagctc gtgttgggcc
     4201 gtttcatccc gctgcgcggc aatgccggac tggagcttgc cctcgccaat catccggccg
     4261 ccgcagcgtc cggcgatcag cgccaaatat tcgtggagcg cctgcacgaa atccacccgc
     4321 tcgaaagcca gccggccttc gaccggatga tgcggatggg cggcgagatt ccctatgcgg
     4381 ctgcgctggg caagaccgcg ctgcaatgga tcgccgaaca tccgcgc
//
LOCUS       DASQVK010000458         4237 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_473665,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000458 DASQVK010000000
VERSION     DASQVK010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4237)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4237)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4237
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_473665"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            167..1315
                     /locus_tag="VE567_09965"
     CDS             167..1315
                     /locus_tag="VE567_09965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017667951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYZ49205.1"
                     /translation="MLETHTRTVYTPEHEAFRQTVRAWLQKEAVPHIARWDEQGIVDK
                     DIWLKGGEIGMLCPTVPEAYGGLGLDFGYNAVIDEEVSYAGTPLGFGLQSDIVVNYLV
                     SYGSEEQKREWLPKLVSGEVVTAIAMTEPGTGSDLQGIRTTARKDGNHYVVNGSKTYI
                     TNGQNADLILVCAKTDTEVQPAWKGVSIILVEASREGFKRGRNLDKIGQNSADTSELF
                     FEEVRVPITNCLGEEGKGLPYLMMQLPQERLGIAVSGQAGAQRAFDEAVKFTKERKAF
                     GKTVFDFQNTRFTLAELKAKLQVGWAHLDWALARHLKRELTPEEGAAAKLWHTELQWE
                     VMDKCLQLHGGAGYMNEYPIARAWRGARVSRIYGGTNEIMKELIGRKL"
     gene            1355..1618
                     /locus_tag="VE567_09970"
     CDS             1355..1618
                     /locus_tag="VE567_09970"
                     /inference="COORDINATES: protein motif:HMM:NF014643.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008219 - cell death [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HYZ49206.1"
                     /translation="METVNIHEAKTRLSQLIAKAVAGEPFIIAKAGKPLVKVEKIEDE
                     PKKPRRFGFLKGMIHVPDDFDTMFQKEIEEMFYGDGEPNEAAA"
     gene            1602..1988
                     /locus_tag="VE567_09975"
     CDS             1602..1988
                     /locus_tag="VE567_09975"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HYZ49207.1"
                     /translation="MKLLLDTYLLLWLADDSPRLKPAHRAYLADPDHELLFSSASIWE
                     IAIKRMARRRDFDVDPRLLRRSLLEEAFVELPITSEHCLAVAELPLIHKDSFDRLMLA
                     QAKAEGILFVTADEVLVRYPVTLKLI"
     gene            complement(1999..2547)
                     /locus_tag="VE567_09980"
     CDS             complement(1999..2547)
                     /locus_tag="VE567_09980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017669426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYZ49208.1"
                     /translation="MRGFDPQPELADARVRLRPLRPDDWDALYAVASDPLIWEVHPAP
                     DRWQEPVFRRFFADALASGGALVASDAATDEIIGSSRYDRGRAGPGEVEIGWTFIARR
                     YWGGPTNAAMKRLMIAHALGSFERVIFLVGEHNLRSRRAMEKIGGVLTDRLDHPEMAG
                     VPVTHVVYAIDRAGFEQGPLSR"
     gene            complement(2577..3977)
                     /locus_tag="VE567_09985"
     CDS             complement(2577..3977)
                     /locus_tag="VE567_09985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase family protein"
                     /protein_id="HYZ49209.1"
                     /translation="MSGRPQVGVLLAHASDEERERIYAGMDGPTRKAVDRDFDEWALL
                     GQHPPRGDWRVWLILAGRGYGKTRAGAEWVTKLARRSGRRHIAIVGATMDEARSVMIE
                     GPSGLLACADPRRMLKWEPSLNRLTYKTGVVAQLFSAENPDGLRGPEHQYAWCDELAK
                     WTYPDATWSNLMFGLRQGKDQRVLVTTTPRPIPLLKTLIDDPATVRTGGGSADNLYLP
                     KSFLNAVRTRYAGTHLGRQELDGELIEDVEGALWTRGLLEKCREPLPFRLREGSGGGR
                     ACLSAEEAISGPPAPAASGSGELVRIVIGVDPPASSSGDACGIVICGLDANGIGYLLE
                     DASVTQPRPERWAMAVAAAAARWGADRIIAEANQGGEMVASVLRAQGDALPLTLVHAS
                     RGKVARAEPVRMLYERGRVRHAGIFPELEDQLCGFTIGGGYEGPGRSPDRADALVWAL
                     TELMLGRRAAPRVTLL"
     gene            complement(3974..>4237)
                     /locus_tag="VE567_09990"
     CDS             complement(3974..>4237)
                     /locus_tag="VE567_09990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49210.1"
                     /translation="EMLERALIAEDRVRGALADAESDRDALELLAKHPSRVAELLYRV
                     HRQTALEHDEALDDDPDGEQALAAIKERVDRLRERLLGGAASA"
BASE COUNT          764 a         1486 c         1299 g          688 t
ORIGIN      
        1 caaaattctc catcgacgtt tcgaactgtt ttcgggacaa ggttgggcag cgtggccgcc
       61 gagattagct ccgaatgcgg agcagcgtca cccattgtac aagcgcacct caccttgacg
      121 agaacgtaaa cgcgggctct ccttccggca aaacaggaga ggcccgatgc tcgaaaccca
      181 cacccgcacc gtctatacgc ccgagcacga ggctttccgc cagaccgtcc gcgcctggct
      241 gcagaaagag gccgtgcccc acattgcccg ctgggacgaa cagggcatcg tcgacaagga
      301 catatggctg aagggcggcg agatcggcat gctctgcccc acagtgcccg aggcctatgg
      361 cgggctcggc ctcgatttcg gctataatgc cgtgatcgac gaggaagtct cctacgcggg
      421 caccccgctc ggcttcggcc tgcaatcgga cattgtggtc aactacctgg tctcctacgg
      481 ctccgaagaa cagaagcgcg aatggctgcc gaagcttgtc tcgggcgagg tcgtcaccgc
      541 cattgcgatg acggagcccg gcacaggctc cgacctgcag ggcatccgca ccacggcccg
      601 caaggacggc aaccattatg tcgtcaacgg ctccaagacc tacatcacca acggccagaa
      661 tgccgacctg atcctggtct gcgccaagac cgacactgaa gtgcagcccg cctggaaagg
      721 cgtgtcgatc atcttggtcg aagccagccg cgagggcttc aagcgcggcc gcaacctcga
      781 caagatcggc cagaactccg ccgacacctc ggagctgttc ttcgaggagg tgcgggtgcc
      841 gatcaccaac tgcctcggcg aggagggcaa gggcctgccc tatctgatga tgcagctgcc
      901 gcaggagcgg ctgggcatcg cggtctccgg ccaggcgggc gcccaacgcg ccttcgacga
      961 ggcggtgaag ttcaccaagg agcgcaaggc gttcggcaag accgtgttcg atttccagaa
     1021 cacccgcttc acgctcgccg agctgaaagc caagctgcag gtcggctggg cccatctcga
     1081 ctgggcgctc gcccgccacc tgaagcgcga actcacgccc gaggaaggcg ccgccgccaa
     1141 gctctggcac accgagctgc aatgggaagt catggacaaa tgcctccagc tccatggcgg
     1201 cgccggctat atgaacgaat atccgatcgc ccgcgcctgg cgcggcgccc gcgtcagccg
     1261 catctatggc ggcacgaacg agatcatgaa ggaactgatc ggacgaaagc tgtagatgtt
     1321 tggtgaacta agtccgatgg actaagttca cgccatggaa acggtcaaca tccacgaagc
     1381 caagacgcgg ctgtcgcagc tgatcgcgaa agcggtggcg ggagagccct tcatcatcgc
     1441 caaggccggc aagccgctcg tcaaggtgga gaaaatcgag gacgagccga aaaagcctcg
     1501 tcgtttcggc tttctcaaag gcatgattca cgttcccgac gatttcgaca caatgttcca
     1561 gaaagaaatc gaggagatgt tttacggcga cggcgagccg aatgaagctg ctgcttgata
     1621 cgtatcttct gctctggctc gccgatgatt ctcctcgcct caagcccgcc caccgcgcct
     1681 atctggccga cccggaccat gagctgctgt tcagctcggc ttcgatctgg gaaatcgcca
     1741 tcaagcgcat ggctcggcgt cgcgatttcg acgtcgatcc acgcctcctc cggcgcagcc
     1801 ttttggagga ggcttttgtg gagctgccga ttacgagcga gcattgcctt gcggtcgccg
     1861 agctgccctt gatccacaaa gactcattcg accggcttat gctcgctcag gcgaaagccg
     1921 aagggatcct gttcgtcaca gcggacgagg tgcttgtccg gtatcctgtg acgctcaagc
     1981 tgatctgaac cggccggatc agcgactgag cggcccctgc tcgaatcccg cccggtcgat
     2041 cgcgtacacc acgtgcgtga ccggcacgcc cgccatttcc gggtggtcga gccggtccgt
     2101 cagcacaccg ccgatcttct ccatcgcccg gcgcgagcgg agattatgct cgccgaccag
     2161 gaagatcact cgctcgaatg agccaagcgc atgagcgatc atcagccgct tcatcgccgc
     2221 gttggtgggg ccgccccaat agcgacgagc gataaaggtc cagccgatct ccacctcgcc
     2281 cggcccggcg cgcccgcgat cgtagcgcga ggagccgata atctcgtccg tcgccgcgtc
     2341 gctcgcgacc aaagcgccgc cgcttgccag cgcgtcggcg aagaagcggc ggaacaccgg
     2401 ctcctgccag cggtcgggcg ccgggtggac ttcccagatc agcgggtcgg acgcgaccgc
     2461 gtacagcgcg tcccaatcgt ccggccggag cggccgcagc cgcacccgcg catcggcaag
     2521 ttcgggctgg ggatcgaagc cgcgcatccc cgtgctttgc catgccgggg gcccgctcac
     2581 aacagcgtca cccggggcgc cgctcgcctc cccagcatca gctcggtcag cgcccagacc
     2641 agggcgtcgg cccggtcggg cgagcggccc ggcccttcat agccgccgcc gatcgtgaag
     2701 ccgcataatt gatcctccag ctccgggaat atgcccgcgt ggcgcacgcg cccccgctcg
     2761 tagagcatcc gcaccggctc cgcccgcgca accttgcccc ggctggcatg cacgagcgta
     2821 agcggcaagg catcaccctg cgcacgcaac acgcttgcca ccatttcacc gccctggttc
     2881 gcttcggcaa tgattcgatc ggcaccccag cgtgccgccg ccgccgccac cgccatcgcc
     2941 caacgctccg gccgcggctg cgtgacgctt gcgtcctcca gcagatagcc aatgccgttc
     3001 gcatcgagcc cgcaaataac gatcccgcaa gcatcgccgc tgctcgacgc cggcgggtcc
     3061 acgccgatga cgatgcgcac cagctctccg ctcccgcttg cggcaggggc cggtgggccc
     3121 gatatcgcct cctctgcgga caggcaggcg cgcccacccc ctgacccctc gcgcaagcgg
     3181 aagggaagag gctccctgca cttttccagc aaccccctgg tccagagcgc accctccaca
     3241 tcctcgatca actcgccatc cagctcctgc cggccaagat gcgtgcccgc atatcgggtg
     3301 cggacggcat tgaggaacga cttgggcaaa tagagattgt ccgcgctccc gccgccggtg
     3361 cggacggtcg ccgggtcgtc gatcagcgtc ttcagcaagg ggatcggccg tggcgtcgtc
     3421 gtcaccagca cgcgctggtc cttgccttgc ctgagcccga acatcagatt ggaccaggtc
     3481 gcgtccggat aggtccattt ggcgagctcg tcacaccagg catattgatg ctcgggcccg
     3541 cgcagcccgt ccggattctc ggccgagaag agctgcgcga cgacaccggt cttgtaggtc
     3601 aggcgattga gcgagggctc ccatttgagc atccgccggg gatcggcgca ggcaagcagg
     3661 ccgctcggcc cttcgatcat cacgctgcgc gcttcgtcca tggtcgcgcc gacgatcgcg
     3721 atgtgccgcc ggcccgaacg gcgcgccagc ttcgtcaccc attccgcgcc ggcgcgcgtc
     3781 ttgccatagc cgcgcccggc caggatcagc cagacgcgcc aatcgccgcg cggcgggtgc
     3841 tggccaagaa gcgcccattc gtcgaaatcg cggtcgaccg ccttgcgggt cggcccgtcc
     3901 atcccggcat agatgcgctc gcgctcctcg tcgctggcgt gcgcgagcag cacgccgacc
     3961 tgcgggcggc cgctcacgcc gaggccgccc cgccgagcag ccgttcgcgc aggcggtcga
     4021 cccgctcctt gatcgcggcg agcgcctgtt cgccgtccgg atcgtcgtcg agcgcctcgt
     4081 catgttcgag cgcggtctgc cgatgcacgc ggtaaagcaa ttcggcgacg cgcgacgggt
     4141 gtttggccag gagttccagt gcgtcgcgat cgctctcggc atcggccagc gcgccgcgca
     4201 cgcgatcttc cgcgatcagc gcgcgctcca gcatttc
//
LOCUS       DASQVK010000459         2571 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_252167,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000459 DASQVK010000000
VERSION     DASQVK010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 2571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2571
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252167"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..872
                     /locus_tag="VE567_09995"
     CDS             <1..872
                     /locus_tag="VE567_09995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar M-ring protein FliF C-terminal
                     domain-containing protein"
                     /protein_id="HYZ49211.1"
                     /translation="VGAGKVRAEVAATIDRDQTREEASAVDPDKQAIAHQVTVESNDQ
                     SDENGAATPVASVAQQLPAAGTTTPPGGDSRRSRRGETSEDTTYENSRTNTVRVRAPG
                     AITRLTVAVMVDAGERGLPPQELQRLQRLVENAVGFDAQRGDNVAVESMPFAAADAGA
                     ADQNIFSNLPLDQIFGVLKLLIIAGVALLAVRMLRPKYDRRRSEEASVPAQDALAAPA
                     QEPLALPTGSTGIDEAALLAAAEGQVNLLDQEVALAQVDGRVKLSAIKRIGEAVSASP
                     AEAASVIRQWMAA"
     gene            884..1246
                     /gene="fliN"
                     /locus_tag="VE567_10000"
     CDS             884..1246
                     /gene="fliN"
                     /locus_tag="VE567_10000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010545170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HYZ49212.1"
                     /translation="MSIDSVNHDLMRSSFDIGIEEFDEAPPSHGSAASPATSRPGDPM
                     EAVFEVPVKVKAVLGGARVQVGELIRMRAGSVVELDRRVGEPVDVFVNDRLIARGELV
                     LIEGSLGITLTEIVKQDR"
     gene            1246..>2571
                     /locus_tag="VE567_10005"
     CDS             1246..>2571
                     /locus_tag="VE567_10005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010214881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HYZ49213.1"
                     /translation="MAVVSCNLVRVVLVGRRGSEFLCAAELAHQSGAEVVLANSPAAA
                     LDSLRRHSADLVMIDVQLDVPAFLRQLRSERLALPVLACGVHASAERAVAAIRAGAID
                     YVPLPPQRELIAAAILAAGQRVSSPIGEDPALTLAIEYARAVAPAGTPMLISGEPGTG
                     KQVMARLIHTNSGRAGRFVTIECEGVAPEILESELFGHEAGAFPGAVEPRIGRLEDGA
                     SGTVFLREVGALPASVQARLAAWLRDGEAPVAPAAPLRARIVASSSRDLGALSAAGMF
                     RADLLARLCLVRIDMPPLRERGEDIASLATHFAERLAMDNALPVRPFAKEAMRCLRSH
                     TWPGNVRELEDVVHRAILLARGPAIEADALVFSNGSRIAATEACAAQGGSQLQVAPLV
                     GHSMAEIERELILHTLNRCGGNRTTASTILGISVRTMRNKLKSFIDAGIP"
BASE COUNT          431 a          842 c          873 g          425 t
ORIGIN      
        1 tcgttggcgc cggcaaagtg cgcgccgagg tggctgcaac gatcgatcgc gaccagacgc
       61 gcgaggaagc cagtgcagtg gatccggaca agcaggcgat cgcgcaccaa gtgaccgtag
      121 aatccaacga ccagagcgat gaaaatgggg ccgcaacccc cgtcgcgagc gtcgctcagc
      181 agctccccgc cgcaggaact actactccac caggcggcga tagccgccgg tcccggcgcg
      241 gagaaacctc ggaagacacg acctacgaga atagccgcac caacacggtc cgggtgcgcg
      301 ctccgggcgc gatcacgcgc ctcaccgtcg cggtgatggt ggatgccgga gaacgcggcc
      361 tgccgcccca agagctgcaa cggcttcaaa ggcttgttga gaatgccgtc ggcttcgacg
      421 ctcagcgcgg cgacaatgtc gcggtggaaa gcatgccctt cgccgctgca gatgcgggcg
      481 cggccgacca aaatatcttt tcgaacctgc cgctcgacca gattttcggc gtgctcaagc
      541 tgctcatcat cgccggggtc gcgctgctgg cggtacggat gctgcgcccg aaatatgatc
      601 ggcgccgatc ggaagaggcg agcgttcctg cccaggacgc gctcgccgcg cctgcccagg
      661 agcccttggc gctgcccacc ggcagcaccg ggatcgatga ggccgcgctt ctcgcggccg
      721 cggaaggcca ggtgaacctg ctcgatcagg aagtggcgct ggcccaggtg gacgggcgtg
      781 tgaagctctc cgcgatcaag cgaatcggcg aggccgtatc ggccagcccg gccgaggccg
      841 cttcagtcat acgccagtgg atggccgcct aaaggagcaa tagatgagca tcgattccgt
      901 caaccacgac ctaatgcgct cgtcctttga catcggcatc gaggagttcg acgaggcacc
      961 tccatcgcac ggtagcgcgg cgagcccggc aacttcccgg cccggcgacc cgatggaggc
     1021 cgtcttcgag gtccccgtca aagtgaaggc tgtgcttggc ggcgcacgcg tgcaggtcgg
     1081 ggagctcatc cggatgaggg ccggaagcgt cgtcgagctc gatcgccggg ttggcgagcc
     1141 ggtggacgtg ttcgtcaacg accggctgat cgcgcgcggt gaactggttc tcatcgaggg
     1201 ctctctcggc atcactctca ccgagatcgt gaagcaggac cgctgatggc tgtggtgtca
     1261 tgcaatctgg tgcgcgtggt cctggtcgga aggcggggga gcgaattcct ctgcgcggct
     1321 gaactcgcgc accaatcggg ggcggaggtg gttctggcca attctccggc tgccgcgctg
     1381 gattcccttc ggcggcatag cgccgatctg gtcatgatcg atgtgcaact ggacgtgccg
     1441 gcgttcctgc gtcagctccg ttccgaacgc ctcgcccttc cggtgctcgc ctgcggcgtc
     1501 catgcatcgg ctgagcgcgc cgtagcggca atccgtgccg gcgcaatcga ttatgtgccg
     1561 ctaccgccgc agcgcgagtt gatcgcggcc gcgatcctcg ccgccggtca gcgcgtgtcg
     1621 tcgccgatcg gcgaggatcc cgcactgacg ctcgccatcg aatatgcacg cgctgtcgcg
     1681 cctgcgggca cgccgatgct gatctcgggg gaacccggaa caggcaaaca agtgatggcg
     1741 cggctgatcc acaccaattc cggccgcgcc ggtcgtttcg tcacgatcga gtgcgaaggc
     1801 gtagcgccgg aaatcctgga atcggaacta tttgggcacg aagccggcgc atttccgggt
     1861 gcggtcgagc cgcggattgg gcggcttgag gacggcgcga gcggcacggt tttcctccgg
     1921 gaagtcgggg ctctgccggc ttcggttcaa gcgcggcttg ccgcctggct gcgggacggc
     1981 gaggcgccgg tcgcgcccgc agcgccgctt cgcgcgcgca tcgtcgccag cagctcgcgc
     2041 gatctcggcg cgctctccgc tgcgggaatg tttcgtgccg atcttctcgc gcggctatgc
     2101 ctggtcagga tcgatatgcc gccgcttcgt gagcgcggcg aggacattgc cagcttggcg
     2161 acccatttcg ccgaacgcct ggccatggac aacgcgcttc cggtgcggcc cttcgccaag
     2221 gaagcgatgc gctgcctccg cagccataca tggccgggca atgttcgcga gctcgaggac
     2281 gtcgtccacc gcgcgatcct gctggcccgc gggccggcga tcgaggctga cgcgctggtg
     2341 ttcagcaacg ggtcgcgcat tgcggccacg gaggcttgcg cggctcaggg aggaagccag
     2401 cttcaggtgg cgccgctggt gggccatagc atggcggaaa tcgagcgcga gctgatcctg
     2461 cacacgctca accgctgcgg cggcaaccgc actacagcgt cgaccattct cggcatttcc
     2521 gtgcgcacca tgcgcaacaa gctcaaaagc ttcatcgacg cgggcatccc a
//
LOCUS       DASQVK010000460         4401 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_157621,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000460 DASQVK010000000
VERSION     DASQVK010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4401
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157621"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            442..518
                     /locus_tag="VE567_10010"
     tRNA            442..518
                     /locus_tag="VE567_10010"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:476..478,aa:Pro,seq:ggg)
     gene            complement(553..1209)
                     /locus_tag="VE567_10015"
     CDS             complement(553..1209)
                     /locus_tag="VE567_10015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019371065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49214.1"
                     /translation="MALRLPHFIAFVTTLFQIPSAASAAFFWKAPDLRGEPVTGVEPG
                     VLTDAFPGATPAELRAALLWNLRSGLNVAALQCQFEPTLLTQNQYNTLLDNHRDELAK
                     AYQTLSNYFKRTSGKAGQTKLDQYGTRTYSSFSTVLGQYTFCEAAGSIGRQAIFAPKG
                     QLYRVAEERLRELRKSLALAGEQQFNFWIPPYTPLLPPFDERCWKKNQLLDRCAWTRG
                     "
     gene            complement(1371..1670)
                     /locus_tag="VE567_10020"
     CDS             complement(1371..1670)
                     /locus_tag="VE567_10020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007407094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49215.1"
                     /translation="MRDLLTKVLTGSMIAGAVLLVSACGKKEAANNVESTNVTEMNTT
                     DMNTTTDNMTAVDAANGTGNMAGDMNAMGNNMSADNMSSNATGNMTGNNATGNKM"
     gene            complement(1775..2422)
                     /gene="lipB"
                     /locus_tag="VE567_10025"
     CDS             complement(1775..2422)
                     /gene="lipB"
                     /locus_tag="VE567_10025"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003050466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033819 - lipoyl(octanoyl) transferase
                     activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HYZ49216.1"
                     /translation="MISIGGVEWRVSPGLTDYAEAVADMEARAEAIRAGTAPERIWLL
                     EHPALYTAGTSADMAELLDARFPVHKTGRGGRLTYHGPGQRVGYVQLDLDRRGRDLRR
                     FVHGLEDWLIAALGRLGVAARAIDGRVGIWVDTPGGEAKIGAIGVRVRRWVTLHGFSI
                     NVDPDLSHFTGIVPCGLAEFPVASLGSIGNKATLGALDDALRAALPEFIGRLANR"
     gene            complement(2419..3414)
                     /locus_tag="VE567_10030"
     CDS             complement(2419..3414)
                     /locus_tag="VE567_10030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020372083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HYZ49217.1"
                     /translation="MSRKPVPAQPGDRSRIEVVFDRPQLLGQLFGHYDQNLVAIENRL
                     GVYIAARGNKLQIEGEAEATARARDVLTGIYNRIVQGQEVDAGTVEAVIAMSAEPTLD
                     GIIRTDVSQPPPVMIRTRKKTIVPRSATQIRYMEALARDEIIFALGPAGTGKTYVAVA
                     QAVQQLIAGSVDRLILSRPAVEAGEKLGFLPGDMREKVDPYLRPLYDALYDMLPTEQV
                     ERRMASGEIEIAPIAFMRGRTLANAFIILDEAQNTTPMQMKMFLTRFGESSRMVVCGD
                     PRQVDLPDIGKSGLADAVKRLEGVKGISMVRFGSADVVRHPLVGAIVDAYEGGEN"
     gene            complement(3430..>4401)
                     /locus_tag="VE567_10035"
     CDS             complement(3430..>4401)
                     /locus_tag="VE567_10035"
                     /EC_number="2.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006961749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035596 - methylthiotransferase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MiaB/RimO family radical SAM
                     methylthiotransferase"
                     /protein_id="HYZ49218.1"
                     /translation="VQAAQGKRALDTDMPAGSKFDVLPKRARQVRPSAFLTVQEGCDK
                     FCTYCVVPYTRGAEVSRPWDAIVDEAKALVDAGAREITLLGQNVNAWADEQGRYLHDL
                     IAELAKLPSLARIRYTTSHPNDMHDGLIAAHRDIEKLMPFLHLPVQSGSDRILKAMNR
                     SHTAESYLRILDRVRAARPDIAISGDYIVGFPGETDEDFEATLAIVRRIGHSMAFSFK
                     YSPRPGTPAATMPDQTAPEVMDERLKRLQALIVEQQLAFNQAMIGARSRVLLERPGRH
                     PGQLIGKSPWLQSIVVDGGSIGELIEVDIVAAGPNSLTGALTPKQAA"
BASE COUNT          763 a         1377 c         1443 g          818 t
ORIGIN      
        1 agacaggatc attttttcgt ggaaccgttc tgaattgatg ccccgtctag gcttctgtcg
       61 agagtgccgc aacagagctt gtgttgcgcg caggccacag gttcgcgcaa tttacatgaa
      121 tgtgagataa acaggcatga ctctttcgga aagctgacat agcgttggtt cagtcgaagc
      181 gcaggctgaa aagtggccgt ggttcgggga gagcaggcgc tccgccggga agcttgaagg
      241 ggagcaaccc aggtgtcgag cgactgcaat caagggggct gacgttcgtc gtcacgcggg
      301 tgcccggatc ggaaacgatc cgggcattcg gcatttcaga gcccggcgcg acagcgcaaa
      361 ggcttgcctt ctggggctcg cggacataag tccccgcctt ccgggcccca ccgaggcatt
      421 gcttcgacgg gacccaccgg tcggggcgta gcgcagcctg gtagcgcatc acactggggg
      481 tgtgggggtc gctggttcga atccagtcgc cccgaccatt ttgccgccga agcggcgccg
      541 tttggccagg ccttagcccc gcgtccaggc gcagcggtcc aggagctggt ttttcttcca
      601 gcagcgctcg tcgaacggcg gcagcagcgg cgtgtagggc gggatccaga aattgaactg
      661 ctgctcgccg gccagcgcca ggctcttgcg cagctcgcgc agccgctcct cggcaacgcg
      721 gtagagctga cccttgggcg cgaaaatcgc ctggcgcccg atcgaaccgg ccgcctcgca
      781 gaaagtatat tggcccagca cggtcgagaa gctcgaataa gtgcgcgtgc catattggtc
      841 gagcttcgtc tggccggcct ttccgctcgt ccgtttgaaa taattgctga gcgtctgata
      901 ggccttggcc aattcgtcgc gatggttgtc gagcagggta ttatattggt tttgcgtcag
      961 cagcgtcggt tcgaactggc attgcagcgc ggccacgttc agccccgagc gcaggttcca
     1021 aagcagggcg gcgcgcagtt cggcgggcgt ggcgccggga aaagcatcgg tcagcacgcc
     1081 cggctcgacg ccggtgaccg gctcgccgcg cagatcgggc gctttccaga aaaaggcggc
     1141 cgaggcagcg ctgggaattt gaaaaagggt cgtaacaaaa gcgatgaagt gcggcagtcg
     1201 taaagccatc gaaacgaaac tccgggatcg acgctaaact agccgcattt cagcctggca
     1261 caaccgtttc gcgcaacctc ggctcgacgc aaagacttat cggctcgcca ccaataaaaa
     1321 ggccgcccgg attcccggac ggccttccca atcgactaat cgaaagtcga ttacattttg
     1381 ttgccggtgg cgttgttgcc ggtcatgttg ccggtcgcat tcgacgacat gttgtcagcc
     1441 gacatattgt tgcccatcgc gttcatgtcg ccggccatgt tgccagtgcc attcgccgcg
     1501 tcgacagcag tcatgttgtc ggtggtggtg ttcatgtcgg tcgtgttcat ttcagtaaca
     1561 ttcgtcgact cgacgttatt cgccgcttcc ttttttccgc aggccgagac cagcagaaca
     1621 gcgccggcga tcatcgagcc ggtcagaact ttcgtgagaa ggtcacgcat tccaaactcc
     1681 cttgttttag cgatttggcc ggctcgttgg ccgtccgtag ccaaatcagg cccgttctta
     1741 gacacaaaag cttcacctct caagagttgt tctatcagcg gttggcgagc cggccgatga
     1801 actccggcag ggcagcgcgg agcgcgtcgt ccagcgcgcc aagcgtcgct ttgttcccga
     1861 tcgagccaag gctggcgacc ggaaattcgg caagtccgca gggcacgatg ccggtaaaat
     1921 ggctgagatc ggggtccaca ttgatcgaaa agccgtgaag cgtgacccag cggcgcacgc
     1981 gcacgccgat ggcgccgatc tttgcttcgc ccccgggcgt gtcgacccag atgcccaccc
     2041 ggccgtcgat cgcccgcgct gccacgccca gccggccaag cgcggcgatc agccaatcct
     2101 ccaggccgtg cacgaagcgg cgcaggtcgc ggccgcgccg gtccaggtcg agctggacat
     2161 agcccacgcg ctggccgggc ccatgataag tgagccgtcc cccgcgtccc gtcttgtgta
     2221 cgggaaaacg ggcatcgagc agctcggcca tgtcggcgct ggtgccggcg gtgtagaggg
     2281 caggatgctc gagcagccag atgcgctcgg gggccgtgcc ggcgcggatc gcttcggccc
     2341 gggcctccat gtctgcgacg gcctcggcat aatcggtgag gccgggcgat acgcgccatt
     2401 caaccccgcc gatcgagatc aattctcccc gccttcatag gcgtcgacga tggcgcccac
     2461 gagcggatga cggacgacgt cggcgctgcc gaagcggacc atcgaaatgc ctttcacgcc
     2521 ttccagccgc ttgacggcat cggcgaggcc cgacttgccg atgtcgggca agtccacctg
     2581 gcgcggatcg ccgcacacca ccatgcggct gctctcgccg aaccgggtca ggaacatctt
     2641 catctgcatc ggcgtggtgt tctgcgcctc gtccaggatg atgaaggcgt tggcgagggt
     2701 gcggccgcgc atgaaggcga tcggcgcgat ttcgatctcg cccgaggcca tgcgccgctc
     2761 gacctgctcg gtcggcagca tatcgtaaag cgcgtcgtaa aggggccgca gatagggatc
     2821 caccttctcg cgcatatcgc cgggcaggaa gcccaatttc tcgcccgcct cgacggccgg
     2881 acgcgagagg atcagccggt cgaccgagcc ggcgatcaac tgctgcacgg cctgggcgac
     2941 ggcgacatag gttttgccgg tgccggccgg acccagcgcg aagatgatct cgtcgcgggc
     3001 gagcgcttcc atgtatcgga tctgcgtggc cgagcgcgga acgatcgtct tcttgcgcgt
     3061 gcggatcatc accggtggcg gctgcgacac gtcggtgcgg atgatgccgt cgagcgtcgg
     3121 ttcggcggac atggcgatca ctgcctcgac cgtgccggca tcgacttcct ggccctggac
     3181 gatccggttg tagatgccgg tcagcacatc ccgcgcgcgg gcagtcgctt ccgcttcgcc
     3241 ttcgatctgc agcttgttgc ctcgcgcggc gatatagacg ccgagccggt tctcgatcgc
     3301 gaccagattc tggtcgtaat ggccgaaaag ctggccgaga agctggggcc ggtcgaatac
     3361 gacctcgatc cggctgcggt cgcccggttg ggcgggaacg ggcttacgcg acatgcatct
     3421 cctgtgcgct caggcggcct gcttgggagt cagagcaccc gtgagactat tcggccccgc
     3481 ggcgacgatg tccacctcga ttagctcgcc gatcgagccg ccatccacaa caatcgactg
     3541 cagccagggc gatttgccga tcagctgccc gggatggcgg ccaggccgtt cgagcaggac
     3601 ccggctgcgg gcgccgatca tcgcctggtt gaaggcgagc tgctgctcga cgatcagcgc
     3661 ctggaggcgc ttcagccgtt cgtccatcac ttcgggcgcg gtctggtccg gcatcgtcgc
     3721 ggcgggggtg ccggggcgcg gcgaatattt gaagctgaac gccatcgagt ggccgatccg
     3781 gcgcacgatc gccagcgtgg cttcgaaatc ctcgtccgtc tcgccgggga agcccacgat
     3841 gtaatcgccc gaaatcgcga tgtccggccg ggccgcgcgg acccggtcca ggatgcggag
     3901 ataggattcc gccgtgtggc tgcgattcat cgccttcagg atgcggtcgc tgccggactg
     3961 taccggcagg tggaggaacg gcatcagctt ttcgatgtcg cgatgggcgg cgatgagccc
     4021 gtcgtgcatg tcgttcggat ggctggtcgt gtagcggatg cgcgcgaggc tcggcagctt
     4081 ggccaattcc gcgatcaggt cgtgcagata acggccctgc tcgtcggccc aggcattgac
     4141 gttctggccg agcagagtga tctcgcgcgc ccccgcgtcg acgagcgcct tggcctcgtc
     4201 gacgatcgca tcccaggggc gggagacttc ggcgccgcgc gtataaggca ccacgcaata
     4261 ggtgcagaat ttgtcgcagc cttcctgcac agtcaggaac gcgctgggcc gcacctgccg
     4321 cgcacgcttt ggcaacacgt cgaatttgga acccgccggc atgtcggtgt ccagcgcgcg
     4381 cttgccctgc gcggcttgca c
//
LOCUS       DASQVK010000461         4118 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_252303,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000461 DASQVK010000000
VERSION     DASQVK010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 4118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4118
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252303"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1157)
                     /locus_tag="VE567_10040"
     CDS             complement(<1..1157)
                     /locus_tag="VE567_10040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010125256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HYZ49219.1"
                     /translation="MRRLDPAVREEDRAPPADGQRFFNRELSWLAFNRRVLEEACNPN
                     HPLLERLRFLSISGNNLDEFFMVRVAGLKGQQLLGVEERSFDGLTVAQQLAAVTAEAE
                     RLMQAQQRVWADLSAALAAAGIQVVRESELDSHATQWLEAHFRAHIFPIITPQALDPA
                     HPFPFIPNKGLSLIFDLVRLSDKEPIRELVMLPASLPPFVRIPGEHTRYIAMESVLRC
                     FTGLLFPGYRVTGSGAFRVIRDSDIEIEEEAEDLVRYFRSAIKRRRRGRVIRLELEEG
                     IPEPLERQVRGELGGGDTIVTVAGGLLGLGDLEALVEDDRPDLKWDPFSPRFPERIRE
                     YGGDCFAAIKAKDIVVHHPYETFDVVLAFLNQAAADPDVVAIKQTLYRAGK"
     gene            complement(1157..1762)
                     /locus_tag="VE567_10045"
     CDS             complement(1157..1762)
                     /locus_tag="VE567_10045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA/Hda family protein"
                     /protein_id="HYZ49220.1"
                     /translation="MSQMALPLGWPADERQEDFIVGESNAKAVRHLEHWGTWPVMATI
                     LTGPRKSGRSLLGRLFAKKTSGRLIDDAERRPEEELFHAWNAAQESHRPLLIVADEAP
                     PAWKIRLPDLRTRLAATPVVPIADPDDALAAALIEKLLLQRNLQVPPGLIPWLVPRIE
                     RTHLAIVQAVDALDEAALARHVRLSVKLARDTFGAKQEDLF"
     gene            complement(1759..3039)
                     /locus_tag="VE567_10050"
     CDS             complement(1759..3039)
                     /locus_tag="VE567_10050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019833345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HYZ49221.1"
                     /translation="MIALRRFSVPLPLVLILVMALGFAAMLRAQIEGGERGVPPIDSS
                     SSFEVTGIDVDVYGPNADAARLAGWREAQRKGWDALWRRTHGGEAGPALNDSALDGIV
                     AGIVVEDEQIGPHRYIARLGVLFDRARAGTMLGTSTSMLRSAPMLVIPVEWSGGVPQG
                     FETRTEWQKAWARFRTGGSPVDYVRPTGTGPDSLILTPTQTWRPGRTWWRLLIDGYGA
                     ADVLVPQVQLERQWPGGPVIGRFSAFHGPDRELLGSFVLRVDSAEGIAKLMDEGVKRM
                     DELYTRALQEGRLAPDPSLTVEPAVPEGDLTADEALLPEESATIESSAPAPGTVTVNI
                     QYDTPDVGSVSAGEAALRAVPGVRAAQTASLALGGVSVMRVSYEGELGGLAAALQARG
                     WQVQQGPNTLRIRRGAPPAPASASPSPTATPARK"
     gene            3099..>4118
                     /gene="purM"
                     /locus_tag="VE567_10055"
     CDS             3099..>4118
                     /gene="purM"
                     /locus_tag="VE567_10055"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017500249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HYZ49222.1"
                     /translation="MSESQSYTYAQAGVSIAAGNALVKAIAPLAKSTRRPGADAELGG
                     FGGFFDLKAAGYRDPLLVAANDGVGTKLKLAIEHDRHDGVGIDLVAMCANDLIVQGAE
                     PLFFLDYYATGRLESGVAERVIAGIAEGCRQAGCALIGGETAEMPGMYADGDYDLAGF
                     CVGAVERDQALTGTRVKAGDMILGLASSGVHSNGFSLVRRLAADKEWKLGRPALFDQD
                     VLLIDALMAPTRIYVRSLLPLVREGRIAALAHITGGGLLENIPRVLPDDLHARIDADA
                     WPQPRLMAFLQAQGAIEPEEMARTFNCGIGMAVIVAGEQEQAVREALTEAGETVFKIG
                     RIEGGE"
BASE COUNT          663 a         1370 c         1449 g          636 t
ORIGIN      
        1 tgcttgccgg cgcggtagag cgtctgcttg atcgcgacca cgtccgggtc cgcggccgcc
       61 tggttcagga aggcgagaac cacgtcgaac gtctcatacg ggtggtggac aacgatgtcc
      121 ttggccttga tcgccgcgaa acaatctccg ccatattcgc gaatgcgttc ggggaagcgc
      181 ggtgagaacg ggtcccattt gagatcgggc cggtcgtcct cgaccaatgc ctcgaggtcg
      241 ccgaggccga gcagcccgcc ggcgacagtg acgatcgtgt cgccgccgcc cagctcgccg
      301 cggacctggc gctccagcgg ctcgggaatg ccttcctcga gttccagccg gatcacccgg
      361 ccgcggcggc ggcgcttgat cgcactgcgg aaatagcgga ccagatcctc cgcttcctcc
      421 tcgatctcga tgtcgctgtc gcggatgacg cggaaagcgc cggagcccgt cacgcgatag
      481 ccggggaaca gaaggccggt gaagcagcgc agcaccgatt ccatcgcgat gtagcgcgtg
      541 tgttcgccgg gaatccgcac aaagggcggc aggcttgccg ggagcatgac cagctcgcgg
      601 atcggttcct tgtccgacag gcgaacgagg tcgaagatga ggctgagccc cttgttcggt
      661 atgaacggga agggatgcgc gggatcgagc gcctgcgggg taatgatggg aaaaatgtgc
      721 gcgcggaaat gggcttccag ccattgcgtt gcatggctgt ccagctcgct ctcccgcaca
      781 acctggatgc ccgcggcggc gagcgcggcg ctgagatcgg cccagacccg ctgctgggcc
      841 tgcatcagcc gctcggcctc cgcagtgacg gcggcgagct gctgcgcgac cgtcagcccg
      901 tcgaacgaac gctcctccac gcccagcaat tgctggccct tgagaccggc cacgcggacc
      961 atgaagaatt cgtcgagatt gttgccggaa atcgacagga accgcagccg ctccagcagc
     1021 gggtgattgg ggttgcacgc ctcttcgaga acgcggcggt tgaaggccag ccagctcagc
     1081 tcacggttga agaagcgctg cccgtcggcg ggcggcgccc tatcctcttc gcgaacggcc
     1141 ggatccaggc ggcgcatcag aacaaatcct cctgctttgc gccgaacgta tcgcgcgcaa
     1201 gcttgaccga caatcgcacg tgccgggcga gcgctgcttc gtcgagtgcg tccaccgcct
     1261 gaacgatcgc gagatgcgtc cgctcgatcc gcggcaccag ccaggggatc aaccccggcg
     1321 gcacttgcag gttgcgctgg agcaacagct tttcgataag tgcagccgcc agcgcgtcgt
     1381 cgggatcggc aatcgggacg accggggtgg cggcgagcct ggtccggaga tccggcaagc
     1441 ggattttcca ggccggcggc gcttcgtcgg cgacgatcag cagcggccgg tgactctcct
     1501 gcgcggcatt ccaggcgtgg aacagttctt cctcaggccg gcgctcggca tcgtcgatca
     1561 gccggccgct cgtctttttc gcgaacagcc gcccgagcag gctgcggccc gacttgcgcg
     1621 ggccggtcag gatcgtcgcc atgaccggcc aggtgcccca atgttcgagg tgacggacgg
     1681 ccttggcgtt gctttcgccg acgatgaagt cttcctggcg ctcgtcggcg ggccacccga
     1741 gcggcagcgc catctggctc atttgcgcgc cggagtcgcc gtcgggctgg gcgacgccga
     1801 ggccggcgca gggggcgccc cgcggcgaat gcgtagcgtg ttcggcccct gctggacctg
     1861 ccagccccgc gcctgcaagg cggcggcaag tccgccgagc tcgccttcat agctgacccg
     1921 catgacggag acgccgccga gcgcgaggct cgcggtctga gcggcgcgga cgcccgggac
     1981 ggcccgcagc gcggcttcgc ccgcgctgac cgagccgaca tcgggcgtgt cgtactgaat
     2041 gttgacggtc accgtgcccg gcgcgggcgc gctcgactcg atcgtcgcgc tttcctcggg
     2101 aagcagcgct tcgtccgcgg tcaaatcccc ctcggggacg gccggctcga cggtcagcga
     2161 cggatcgggc gcaagccggc cttcctgcag agcgcgcgta tagagttcgt ccatgcgctt
     2221 gacgccctcg tccatgagct tggcgatgcc ttcggccgag tcgacccgca acacgaagct
     2281 gccgagcagc tcccggtcgg ggccgtggaa agcggagaag cgtccgatca ccgggccgcc
     2341 gggccattgc cgctcaagct ggacctgcgg gaccagcacg tcggccgcgc catagccgtc
     2401 gatcagcaac cgccaccagg tccgtccggg ccgccaggtt tgcgtgggag tgaggattag
     2461 cgaatccggt ccggtgccgg tggggcggac atagtcgacc gggctgccgc cggtgcggaa
     2521 ccgagcccag gccttttgcc attcggtacg cgtctcgaag ccctgcggca cgccgcccga
     2581 ccactccacc gggatcacca gcatcggcgc ggagcggagc atgctggtcg acgtgccgag
     2641 catcgtgccg gcgcgcgcac ggtcgaacag cacgcccaac cgcgcgatat agcggtgcgg
     2701 accgatctgc tcgtcctcga ccacgatgcc ggcgacgatg ccgtcgagcg cagagtcgtt
     2761 cagcgcgggc cccgcctcgc cgccatgggt gcggcgccac aacgcgtccc agcccttgcg
     2821 ctgcgcctcg cgccagcccg cgaggcgcgc cgcatcggca ttggggccat agacgtcgac
     2881 atcgatcccc gtcacttcga agctcgacga gctgtcgatc ggcggcacgc cgcgctcccc
     2941 gccttcgatc tgcgcgcgca gcatcgcggc gaagccaagg gccatcacca gaatcaggac
     3001 caagggaagc gggacggaaa aacggcgcag cgcgatcacg ccgcccttct ggcctgtcgg
     3061 cggtggaaat ccaagcatct tgtcgctacg cccgcgcgat gagcgagagc caatcctata
     3121 cctatgccca ggcgggcgtt tcgatcgcgg cggggaatgc gctggtgaag gcgatcgcgc
     3181 cgctggcgaa aagcacgcgg cggccgggcg cggacgcgga gctgggcggg ttcggcggct
     3241 ttttcgacct gaaggccgcg ggctatcgcg atccgctgct ggttgcggcc aatgacggcg
     3301 tcggcaccaa gctgaagctc gcgatcgagc atgaccggca cgatggggtg ggcatcgatc
     3361 tggtcgcgat gtgcgccaac gacctgatcg tacagggcgc ggagccgctg ttcttcctcg
     3421 attattacgc gaccgggcgg ctggaaagtg gcgtcgccga gcgcgtcatc gccggaatcg
     3481 cggagggctg ccgtcaggcc gggtgtgcgc tgatcggcgg cgagacggcg gaaatgccgg
     3541 gtatgtacgc ggatggcgat tacgacctgg ccggcttctg cgtgggcgcg gtcgagcgcg
     3601 atcaggcgct gacgggcacc cgcgtgaagg ccggcgacat gatcctgggc ctcgcgtcct
     3661 cgggcgtgca ctcgaacggc ttttcgctcg tgcgacgcct cgccgcggac aaggaatgga
     3721 agctcggccg ccctgccctg ttcgaccagg acgtgctgct gatcgacgcg ctgatggcgc
     3781 cgacgcgcat ctatgtgcgt tccttgctgc cgctggtgcg cgaagggcgg atcgcagcgc
     3841 tggcgcacat caccgggggc ggtctgctcg aaaacatccc gcgcgtgctg ccagatgacc
     3901 tgcacgcccg catcgacgcc gacgcgtggc cgcagccgcg gctgatggcc ttcctgcaag
     3961 cgcaaggcgc gatcgagccg gaggaaatgg cgcgcacgtt caactgcggc atcggcatgg
     4021 cggtgatcgt cgcgggggag caggaacaag cggtgcggga agcgctgaca gaagctggcg
     4081 agaccgtgtt caagatcggc cggatcgagg gcggcgag
//
LOCUS       DASQVK010000462         3902 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_221188,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000462 DASQVK010000000
VERSION     DASQVK010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3902)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3902
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221188"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..516
                     /locus_tag="VE567_10060"
     CDS             <1..516
                     /locus_tag="VE567_10060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010160532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HYZ49223.1"
                     /translation="SLATYNNSDSVTAGLDASLRGIDSGSYVALSFGYDTGQSYFIKV
                     QDNNGDGFFDHYGFDTGNNDLNGVFLDLNSPFQTGAVDVSVSGSVATLSIFANGFTQS
                     YFFDYGYAPGSTRVGFGLNRLGVADNFHFDGVASGNDVPEPATWALMISGFGLAGAAA
                     RRRRSTSLALA"
     gene            complement(513..1055)
                     /locus_tag="VE567_10065"
     CDS             complement(513..1055)
                     /locus_tag="VE567_10065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011543409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYZ49224.1"
                     /translation="MSASNATFAIAELREFASFSPATQRYIRRSLGIVREPDAIERYS
                     RDPVEWATITVQARCYRRLPELRKRVPEHSGLESVEPFMAPLVGISAFDLAQERLTSF
                     SAYRFLYERLIGAAARPWLLGAFCAAASLPHIPPQRRRDLLLTISESAATAPGWSRRE
                     PSFYPEWIDLDQEDEADPLH"
     gene            complement(1110..2234)
                     /locus_tag="VE567_10070"
     CDS             complement(1110..2234)
                     /locus_tag="VE567_10070"
                     /EC_number="1.1.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015458268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016901 - oxidoreductase activity, acting
                     on the CH-OH group of donors, quinone or similar compound
                     as acceptor [Evidence IEA];
                     GO_function: GO:0070968 - pyrroloquinoline quinone binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HYZ49225.1"
                     /translation="MRFAALCLFAGALIACSGQAQEANAQPPTAPGSRPFVQAEVTKF
                     DSPWALAFLPDGRMLVTEKAGRLLLVSADGKEHRELARIPVDSAGQGGLMDVVLHPKF
                     AENRFVYISATQAGPGGKGVVLMRGRLAGDPKLRLEGLTTIFRATPFVAGNGHYSGRI
                     AFAPDGHLFFTNGERQKFTPAQDPKSTLGKVLRLNDDGTPAAGNPLAAKGFHPAIWSY
                     GHRNILGIAFDTAGNLWEDEMGPMGGDEVNLILPGRNYGWPKASNGSHYDGRDIPDHR
                     PGDGYEPPKVWWNPSISPSSLMIYSGKLWPEWKGDLFIGALSGTALVRVDVNGTEAKK
                     GDEWDMEARIRGVREGPDGAIWVLEDGDTGGRLWKLTPKK"
     gene            2414..2938
                     /gene="rimP"
                     /locus_tag="VE567_10075"
     CDS             2414..2938
                     /gene="rimP"
                     /locus_tag="VE567_10075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019832560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation protein RimP"
                     /protein_id="HYZ49226.1"
                     /translation="MADIAALTRLIEPEAKALGFDLVRVAMIGGTSDPTLQVMAERPD
                     TRQLTIDDCAELSRRLSDALDAADPIEAAYRLEVSSPGIDRPLTRLKDFEDWQGHEAR
                     IKLVEPIEGRKQLTGILEGVEGDQVAIDVNGFRRMTVPFAAVASAKLTLTDKLIAATA
                     PLSAEGADKVHVEG"
     gene            2948..>3902
                     /gene="nusA"
                     /locus_tag="VE567_10080"
     CDS             2948..>3902
                     /gene="nusA"
                     /locus_tag="VE567_10080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HYZ49227.1"
                     /translation="MATSAVSANKAELLAIADSVAREKLIDKAIVIEAMEDAIQRAAK
                     NRYGAEMDIRAKLDPSNGDLRLWRVVEVVEQVDDLYKQVSVADAQRLQKGAKVGDFIV
                     DPLPPIEFGRIQAQASKQIIFQKVREAERERQYEEFKDRVGEVITGVVKRVEFGHVVV
                     DLGRAEGVIRRDQQIPREVVRVGDRIRALILRVVRENRGPQIFLSRAHPDFMKKLFAQ
                     EVPEIYDAIIEIKAAARDPGSRAKIGVISHDGSIDPVGACVGMKGSRVQAVVQELQGE
                     KIDIIPWSPDTATFVVNALQPANVSRVVIDEEEDRIEVVVPD"
BASE COUNT          698 a         1269 c         1255 g          680 t
ORIGIN      
        1 tcgcttgcga cctacaacaa ctccgactcg gtcactgccg ggctcgacgc gtcgctgcgc
       61 ggcatcgatt cgggcagcta tgtcgccttg tccttcggct atgacaccgg ccagagctat
      121 ttcatcaagg tgcaggacaa taatggcgac ggctttttcg atcattacgg cttcgacacc
      181 ggcaacaacg atctgaacgg cgtgttcctg gacctcaatt caccgttcca aaccggcgcg
      241 gtcgatgtga gcgtcagcgg cagcgtggcg acgctcagca tcttcgccaa cggcttcacg
      301 caaagctatt tcttcgatta cggctatgcg ccgggcagca cgagggtcgg gttcggcctc
      361 aatcgcctgg gcgtcgccga caacttccat ttcgatggcg tcgccagcgg caatgacgtg
      421 cccgagcccg cgacctgggc gctgatgatc tccggtttcg gcctggccgg cgccgcggcg
      481 cgtcgccgcc gcagcaccag cctcgctctg gcctaatgga gcggatcggc ctcgtcctcc
      541 tggtcgaggt cgatccactc gggatagaag ctcggttcgc gccgcgacca gcccggagcg
      601 gtcgcggcgc tttcgctgat cgtcagcaac aggtcccgcc gccgttgcgg agggatatgc
      661 ggcagcgagg cggcagcgca gaaggcgccc aatagccagg gccgcgccgc cgccccgatc
      721 agccgctcat aaagaaaacg ataggcggaa aagctggtca gccgctcctg ggccagatcg
      781 aaggcgctga tgccgaccaa aggcgccatg aacggctcga ccgactcgag cccgctatgc
      841 tccggcacgc gcttgcgcag ctcgggtagg cgccgatagc aacgcgcctg cactgtaatt
      901 gtcgcccact ccactgggtc gcgcgaatag cgttcgatcg cgtcgggctc gcgcacgata
      961 ccgagggacc gccggatata gcgctgggtg gccggcgaaa acgaagcaaa ctcccgcagc
     1021 tccgcgatcg caaacgtcgc gttcgaagcg ctcaatccgc atcacctcct taagcgctag
     1081 ttacgctcgc aaatcgattg cggttccatc tactttttcg gcgtcaactt ccacagccga
     1141 ccgccggtgt cgccgtcttc cagcacccag atcgcgccgt cggggccttc gcggacgccg
     1201 cggatgcggg cttccatgtc ccattcatcg ccctttttcg cctcggtgcc gttcacgtcg
     1261 acgcggacga gcgcagtgcc ggagagcgcg ccgatgaaca gatcgccttt ccactccggc
     1321 cagagcttgc ccgaatagat catcaggctc gacggcgaga ttgacgggtt ccaccagacc
     1381 ttgggcggtt catagccgtc gccggggcgg tggtcgggaa tgtcccgccc gtcatagtga
     1441 ctgccgttcg acgctttggg ccagccataa ttgcggccgg gcaggatcag attgacttcg
     1501 tcgccgccca tcggccccat ttcgtcttcc cacagatttc ccgccgtgtc gaaagcgatg
     1561 ccgagaatgt tgcggtggcc atatgaccag atcgccgggt ggaaaccctt ggcggccagc
     1621 gggttgccgg cggccggcgt gccgtcatcg ttcagccgca gcaccttgcc gagcgtggat
     1681 ttgggatcct gcgccggtgt gaatttctgc cgctcgccat tggtgaagaa cagatggccg
     1741 tcgggcgcaa aggcgatgcg gccggaataa tggccattgc ccgcgacaaa cggcgttgcg
     1801 cggaagatcg tcgtcaggcc ctcgaggcga agcttcggat cgcccgccag ccggccgcgc
     1861 atcagcacca cgcctttgcc gccgggcccg gcctgcgtgg cgctgatata gacgaagcgg
     1921 ttctccgcga atttcgggtg cagcacgacg tccatcagcc cgccttgtcc ggcgctgtcg
     1981 acgggaatgc gcgcgagttc gcgatgctcc ttgccgtcag cgctcaccag caagagcctg
     2041 cccgcctttt cggtcacgag cattcgtccg tcgggcagga aagcgagcgc ccagggagaa
     2101 tcgaactttg tcacctcagc ctggacgaac gggcggctgc ctggggccgt cggcggctgc
     2161 gcattggctt cctgcgcctg gcccgaacag gcgatcagcg caccggcaaa caggcaaagc
     2221 gcggcgaaac gcatcggtaa ctcccttgtg gtcgagcatg cgctagcgtg ccgcagccgg
     2281 cgcgccaatc gccccttgtg acttctgacg gcagggttta tatccccatt gttccctcga
     2341 catcggtaac gaagttgagg ctggtgctct gcggcgccgg cgcggaacgc ctgtgcattc
     2401 tggaaggatt tgagtggccg atattgccgc tttgacgcga ttgatcgagc ccgaggccaa
     2461 agccctcggc ttcgatctcg tgcgcgtggc gatgatcggc ggcacgtccg atccgacgct
     2521 gcaggtgatg gccgagcggc ccgacacccg ccagctgacg atcgacgatt gtgcggagct
     2581 gtcgcggcgc ctctccgatg cgctcgacgc cgccgatccg atcgaggccg cataccggct
     2641 ggaggtcagc tcgcccggca tcgaccggcc gctgacccgg ctcaaggatt tcgaggattg
     2701 gcagggccat gaagcccgca tcaagctcgt cgagccgatc gagggccgca agcagttgac
     2761 cggcatcttg gaaggcgtcg aaggcgatca ggtcgcaatc gacgtcaatg gttttcgccg
     2821 gatgacggtg ccgttcgcag cggtcgccag cgccaagctg acgctcaccg acaagctcat
     2881 cgcggccacc gcgccgctct ccgcagaagg tgcggacaaa gttcacgtgg aagggtaaga
     2941 tcgaacaatg gccacctccg ctgtttccgc caacaaggcc gaattgctcg cgatcgcgga
     3001 ttcggtcgcg cgcgaaaagc tgatcgacaa ggcgatcgtc atcgaggcga tggaagacgc
     3061 gatccagcgc gcggcgaaga atcgctacgg cgcggaaatg gacatccgcg cgaagctcga
     3121 tccgtcgaac ggcgacctgc gcctgtggcg cgtcgtcgaa gtcgtcgagc aggtcgacga
     3181 cctttacaag caggtctcgg tcgccgacgc gcagcggctg cagaagggcg cgaaagtggg
     3241 cgacttcatc gtcgatccgc tgccgcccat cgagtttggc cgcatccagg cgcaagcgtc
     3301 caagcagatc atcttccaga aagtccgcga ggccgagcgc gagcggcaat atgaagagtt
     3361 caaggaccgc gtcggcgagg tcatcaccgg cgtcgtcaag cgggtcgagt tcggccatgt
     3421 cgtcgtcgat ctgggccgcg ccgaaggcgt gatccgccgc gaccagcaga tcccgcgcga
     3481 agtcgtccgc gtcggggatc gcatccgtgc gttgatcctg cgcgtggtgc gcgagaatcg
     3541 cgggccccag atcttcctca gccgcgcgca tccggacttc atgaagaagc tgttcgcgca
     3601 ggaagtgccc gaaatttacg acgccatcat cgagatcaag gcggccgcgc gcgatccggg
     3661 cagccgcgcc aagatcggcg tgatcagcca tgacggctcg atcgacccgg tcggcgcctg
     3721 tgtcggcatg aagggcagcc gcgtgcaggc ggtcgtgcag gagttgcagg gcgagaagat
     3781 cgacatcatt ccctggtcgc ccgacacggc cacgttcgtc gtcaatgcct tgcagccggc
     3841 gaatgtcagc cgcgtcgtca tcgacgagga agaggaccgg atcgaggtgg tcgtccccga
     3901 cg
//
LOCUS       DASQVK010000463         3301 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_221256,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000463 DASQVK010000000
VERSION     DASQVK010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3301
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221256"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..152
                     /locus_tag="VE567_10085"
     CDS             <1..152
                     /locus_tag="VE567_10085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006956235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HYZ49228.1"
                     /translation="SMSTTIAAIRQDTETVASEIDALETGFRKVDAQLGQLRSAARDY
                     VKLVA"
     gene            220..900
                     /locus_tag="VE567_10090"
     CDS             220..900
                     /locus_tag="VE567_10090"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010160559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYZ49229.1"
                     /translation="MTNILLTGASRGIGTACADALKTQNVIGTSSADGDLADPATPRR
                     LWESALDRLGGRIDVLINNAGVFEAAPVDLDHDEWVEQWERTMRINLTASAELCRLAV
                     VHFRQQGGGRIVNVASRAAYRGDSPAHWHYAASKAGMIGMTKSIARGFAAENILAFAV
                     CPGFTMTGMAEEYLSSRGGDKLLADIPLGRVAMPEEVASAVRYLALEAPPSMTGAVID
                     INGASYVR"
     gene            890..1819
                     /locus_tag="VE567_10095"
     CDS             890..1819
                     /locus_tag="VE567_10095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HYZ49230.1"
                     /translation="MSDSWRLSLPCTRAEAEAIDTGALDIDAVLVTTETVEDDVEHWR
                     LEAFTDAEPDAALIAAIRALVPSARGVEPVIEPLTDADWVAMSQAGLEPIREGRFIVH
                     TEAHPVVPGPGERAFLINASQAFGTGHHGTTAGCLAMLDGQADARFRNVIDLGTGTGL
                     LAFAARNLWPEARVMATDIDPVAIEVARENALLNRVERIDFLVADGARDPVIAAAAPF
                     DLITANILAGPLVAMAGEIAAIAAPHATIVLAGLLTNQADKVRAAYEAVGCELQASDA
                     RGDWTILRLRAAAVPVRNALSDDAGRENWARDI"
     gene            complement(1816..2685)
                     /gene="phhA"
                     /locus_tag="VE567_10100"
     CDS             complement(1816..2685)
                     /gene="phhA"
                     /locus_tag="VE567_10100"
                     /EC_number="1.14.16.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004505 - phenylalanine 4-monooxygenase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine 4-monooxygenase"
                     /protein_id="HYZ49231.1"
                     /translation="METHVLDRPPEGANADWTIPQDWSAYTREEHAVWDTLFERQAKL
                     LPGRASERYLRGLDVLRLSRPGIPDFEELSERLMKLTGWQVVAVPGLVPDEVFYEHLA
                     NRRFVAGNFIRAPDQLDYLQEPDVFHDVFGHVPMLADPVFADYVVAWGEGGLRAMKYN
                     AIHRLARLYWYTVEFGLIEEDGALRIYGSGIVSSKGESIFALDDPSPNRIAFDLKRVM
                     RTEYRIDDFQQNYFVIPSFEELLRVTAETDFAPLYAELEGLPDIPIAEIVEGDEVIAR
                     GTQDYARRKAVAV"
     gene            2763..>3301
                     /locus_tag="VE567_10105"
     CDS             2763..>3301
                     /locus_tag="VE567_10105"
                     /inference="COORDINATES: protein motif:HMM:NF021141.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2459 domain-containing protein"
                     /protein_id="HYZ49232.1"
                     /translation="MARALQLLILIPLLYLAAAAIGGAIPRNPGWQEAEDGITVYVAS
                     NGIHTGVIVPSRAAGIDWSPRVRPEHLRDPRYAGHWLWFGWGEREFYLNTPTWTDLSL
                     RTAVHAIIGGKQTLIHVDHLLEPWPEARPVRLTLDQYRRLTRAIAGSFDSADPRPLPG
                     YGPADIFYPARGSYDAIRT"
BASE COUNT          546 a         1167 c         1045 g          543 t
ORIGIN      
        1 attcgatgtc caccacgatc gccgccatcc gccaggacac cgagaccgtc gccagcgaaa
       61 tcgacgcgct ggaaaccggc ttccgcaagg tcgacgccca actcggccag ctccggtccg
      121 ccgcgcggga ctatgtgaag ctggtggcct aagcatcccg cccctttcct ttcaggggag
      181 gggcttactt ccggcgcgcg tctcgttaga cgcatggcca tgaccaacat tctcctcacc
      241 ggcgcatcgc gcggcatcgg gaccgcgtgc gcggacgccc tcaagaccca aaatgtgatc
      301 ggcacctcga gcgccgacgg cgacctcgcc gaccccgcca ccccgcgccg cctgtgggaa
      361 agcgcgctgg accggctcgg cggacggatc gacgtgctga tcaacaatgc cggcgtgttc
      421 gaggcggcgc cggtcgatct cgatcacgac gaatgggtcg aacagtggga acgcacgatg
      481 cggatcaacc tgaccgcctc ggccgagctc tgccgcctcg ccgtggtcca tttccggcag
      541 cagggcggcg ggcgaatcgt caatgtcgcc agccgggccg cctatcgcgg cgattcgccg
      601 gcgcactggc attatgccgc gtccaaggcc ggcatgatcg gcatgaccaa gtcgatcgcg
      661 cgcggctttg cggccgagaa catcctcgct ttcgccgtgt gccccggctt cacgatgacc
      721 ggcatggccg aggagtatct gtcgagccgt ggcggcgaca aattgctcgc cgacatcccg
      781 ctggggcgcg tggccatgcc cgaggaagtt gcttcggccg tccgctatct cgcactcgaa
      841 gcgccgccct cgatgaccgg ggcagtcatc gacatcaacg gcgcgagcta tgtccgatag
      901 ctggcgcctg tcccttccct gcacgcgcgc ggaggcggaa gcgatcgaca cgggcgcgct
      961 cgatatcgat gccgtgctgg tgacgaccga aaccgtcgag gacgatgtcg agcattggcg
     1021 gctcgaggcg ttcacagatg ccgaaccgga tgcagcgctg atcgcggcga tccgcgcgct
     1081 ggtgccaagt gcgcgcgggg tcgagccggt catcgagccg ctcaccgacg ccgattgggt
     1141 ggcgatgagc caggccgggc tggaaccgat ccgcgaaggc cgcttcatcg tccacaccga
     1201 agcgcatccg gtggtgcccg gccccggcga gcgcgcgttc ctcatcaatg cctcccaggc
     1261 cttcggcacc ggccatcacg gcaccacggc cggttgcctg gcgatgctcg acggccaggc
     1321 ggatgcgcgc ttccgcaacg tcatcgatct cggcaccggc accggcctgc tcgccttcgc
     1381 cgcgcgcaac ctctggcccg aagcacgcgt catggcgacg gacatcgacc cggtcgcgat
     1441 tgaagtcgcg cgcgagaatg ccctgctgaa tcgggtcgag cgcatcgatt tcctcgtggc
     1501 ggacggggcc cgcgatcccg tcatcgccgc ggccgcgccg ttcgacctca tcaccgccaa
     1561 catcctcgcc ggcccgctgg tcgcgatggc gggggagatc gcggcgattg ctgccccaca
     1621 cgcgacgatc gtgctcgcgg ggctcctcac caatcaggcc gacaaggtcc gcgccgctta
     1681 tgaagccgtg ggctgcgaac tccaggcctc ggacgcccgc ggcgactgga ccatcctccg
     1741 cctccgcgcg gcggctgttc cggtcaggaa cgcgctcagc gacgatgccg gccgcgagaa
     1801 ttgggcacgg gatatctaga ccgccacggc cttgcgccgg gcatagtcct gcgtcccgcg
     1861 cgcgatcacc tcgtcgcctt ccacgatctc ggcgatcgga atgtcgggca gcccttccag
     1921 ctccgcatag aggggcgcga aatcggtctc ggccgttacg cgcagcagct cctcgaagct
     1981 ggggatgacg aagtaattct gctggaaatc gtcgatgcga tattcggtgc gcatcacccg
     2041 cttcaggtcg aaggcgatgc ggttcgggct gggatcgtcg agcgcgaaaa tgctctcgcc
     2101 tttgctggag acgatccccg agccgtagat gcgcaacgct ccatcctctt cgatcagccc
     2161 gaactccacg gtgtaccaat agagccgggc gagccgatga atggcgttgt acttcatcgc
     2221 gcgcagcccg ccttcgcccc aggcgacgac atagtcggcg aacaccgggt cggcgagcat
     2281 gggcacatgg ccgaacacgt cgtggaaaac gtccggctcc tgcagatagt cgagctggtc
     2341 gggcgcgcgg atgaaattgc ccgcgacgaa ccggcgattg gcgagatgct cgtaaaacac
     2401 ctcgtccggc accaggcccg gcaccgcgac cacttgccag ccggtcagct tcatcagccg
     2461 ttccgataat tcctcgaaat cgggaatgcc ggggcgggac agccgcagca cgtcgagtcc
     2521 gcgtagatag cgctccgacg cgcggccggg caggagcttc gcctgccgtt cgaagagcgt
     2581 atcccaaacg gcatgttctt cgcgggtata ggccgaccaa tcttgcggga tcgtccaatc
     2641 cgcattcgcc ccttcgggcg ggcggtcgag tacgtgagtc tccatcgtgt catttagcgc
     2701 gattcccttg aaagcggaaa tccgcctttc ccttcggcgc cggacagggg agagtgccag
     2761 ccatggcccg cgccctgcag ctgctgatcc tgatccccct gctctacctc gctgcggcgg
     2821 cgatcggagg cgcgattccg cgcaatcccg gctggcaaga ggctgaggac ggcatcaccg
     2881 tctatgtcgc gagcaacggc atccataccg gcgtgatcgt ccccagccga gccgccggca
     2941 tcgactggtc gccgcgcgtt cgtccggagc atcttcgcga tccgcgctat gccggccatt
     3001 ggctctggtt cggctggggc gagcgcgaat tctatctgaa cacgccgacc tggaccgatc
     3061 tttcgctccg cacggcggtt cacgcgatca tcggcggcaa gcagacgctg atccatgtcg
     3121 atcatctgct cgagccctgg ccggaagccc ggccggtccg cctcacgctc gaccaatatc
     3181 gccgcctcac ccgcgccatc gccggcagct tcgactccgc cgacccgcgc ccgctacccg
     3241 gctacggccc cgccgatatc ttctaccccg cccgcgggtc gtacgacgcg atccgcacct
     3301 g
//
LOCUS       DASQVK010000464         3342 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Sphingomonas sp. isolate SMAG_U10985 k141_284474,
            whole genome shotgun sequence.
ACCESSION   DASQVK010000464 DASQVK010000000
VERSION     DASQVK010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946462
            Sequence Read Archive: SRR5919096
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Sphingomonas sp. (soil metagenome)
  ORGANISM  Sphingomonas sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,026
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,984
            CDSs (with protein)               :: 1,984
            Genes (RNA)                       :: 27
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 5 of 15
            Pseudo Genes (incomplete)         :: 9 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3342
                     /organism="Sphingomonas sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284474"
                     /isolate="SMAG_U10985"
                     /isolation_source="soil"
                     /db_xref="taxon:28214"
                     /environmental_sample
                     /lat_lon="14.195246 S 135.71916 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..157
                     /locus_tag="VE567_10110"
     CDS             <1..157
                     /locus_tag="VE567_10110"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007685463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="adenylosuccinate synthetase"
                     /protein_id="HYZ49233.1"
                     /translation="STAGARSWAQLPAQAIKYIRRVEELIHCPVALVSTSPEREDTIL
                     VRDPFAD"
     gene            complement(210..905)
                     /locus_tag="VE567_10115"
     CDS             complement(210..905)
                     /locus_tag="VE567_10115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c family protein"
                     /protein_id="HYZ49234.1"
                     /translation="MNDRYNTIAGWVLGAGIVALGAGIISTEYFHAERPEKMGYPIAG
                     VAAEGGAAEAEVPIEARLASADPANGAKVFQKCAACHTAVKGGANGVGPNLWGVVGEA
                     IGQGAGGFPFSDALKSKGGAWDFGSLDHWLTSPRKFAEGTKMTFAGLSNGKDRADVIA
                     YLNQQSDAPKPLPAAPAAGKIAGDNPGGPAAKSADVGAGSPGTPASGAPSVDPAAKRQ
                     FETKSAMPAVEKK"
     gene            1032..1919
                     /locus_tag="VE567_10120"
     CDS             1032..1919
                     /locus_tag="VE567_10120"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HYZ49235.1"
                     /translation="MENYPEPARRLVAQMIEAAEAEPARAVTFQGAPGANSHRALIEH
                     FEDALPYPCFSFEDALDAVKEGRADHAMIPIENSLHGRVADIHFLLPESGLAIVGEHF
                     LPIEPSLIGRAGHQIREVMSHPQALGQSRKWLRARGLRPVVYADTAAAVAAVAEMGDW
                     SVAAIAPAFAAELYGLDLLFEGIADEPHNMTRFMVLAREQRRPGRADDLMTTLTFEVK
                     NVPAALYKAMGGFATNGVNMTKLESYQRGASFAATEFYADIEGAPGDPAVDRALDELQ
                     FHSKWVNILGVYEQARKRG"
     gene            complement(1916..2791)
                     /gene="nudC"
                     /locus_tag="VE567_10125"
     CDS             complement(1916..2791)
                     /gene="nudC"
                     /locus_tag="VE567_10125"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010218524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000210 - NAD+ diphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HYZ49236.1"
                     /translation="MLTPGFTGSPLDRADTLRNDSEALGRALADWRARLLRLDGIDPV
                     LDDEGRLSWGSLAEADANAELLLLGLIDGRPHFAALDYSMPEAAARSMSIFRALEAMP
                     PEEASTYAGARSLIDWHLRHRFCARCGSGDTAIHRAGWGRKCGSCGTEHFPRVDPVVI
                     MLAENEGKVLVGRQPRYPPGRYSALAGFLEPGESVEEAVARELFEEAGLKVRDVRYVT
                     SQPWPFPSSLMMACIAAADDPTLAIDTTELEDAFWADRAGVEAAMAGDPGAPFLPPPP
                     YAIAHTLFRWWLAKG"
     gene            complement(2785..>3342)
                     /locus_tag="VE567_10130"
     CDS             complement(2785..>3342)
                     /locus_tag="VE567_10130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019830967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HYZ49237.1"
                     /translation="RAHAAALTPPDRAGDYAQAMMDLGATICTPRNPACAICPLREDC
                     RAFAEGRPEAFPVKQPKAAKPHRRGIAFWAEAEGHVLLVTRPAKGLLGGMRALPTGAW
                     GDSPTLDEAPFAADWRLLDRQVRHVFTHFSLDLGIAAAAVARANVPGGEWWPADRLGE
                     AGLPTVFDKAARLALESRMILVPAC"
BASE COUNT          541 a         1173 c         1120 g          508 t
ORIGIN      
        1 atccactgcc ggcgcgcgca gctgggcgca gcttcctgcc caggcgatca aatatatccg
       61 ccgtgtcgaa gagctgatcc actgcccggt ggccttggtc tcgaccagcc cggaacgcga
      121 ggacacgatc ctggtgcgcg atccgtttgc ggattgaccc tgagggtcaa tccagtcccg
      181 tgagtgaaac ggcacggggt cttggaagac tatttcttct ccaccgcagg cattgcgctc
      241 ttggtctcga actggcgctt ggcggccgga tcgactgaag gcgcgccgct ggccggcgtg
      301 cctggcgagc cggcgccgac atcggccgac ttggccgcgg gtccgcccgg attgtcgccc
      361 gcgatcttgc ccgcagccgg cgcggccggc agcggcttcg gtgcatcgct ctgctggttc
      421 agataggcga tcacgtcggc gcggtccttg ccgttcgaca ggcccgcaaa ggtcatcttg
      481 gtgccctcgg cgaatttgcg cgggctggtc agccaatggt cgagcgaccc gaaatcccag
      541 gcgccgccct tggacttgag agcatccgag aaggggaagc cgccggcgcc ctggccgatg
      601 gcttcgccga ccacgcccca aaggttcggt cccacgccgt tggcgccgcc tttgaccgcg
      661 gtgtggcagg cggcgcactt ctggaagacc ttggcgccat tggccggatc ggcgctcgcg
      721 agccgcgcct cgatcggcac ttcggcctcg gccgcgccgc cttcggccgc gacaccggcg
      781 atcgggtagc ccatcttctc cgggcgctcg gcgtggaaat attcggtcga gatgatgccg
      841 gcgcccagag ccacgatgcc ggcacccaga acccagccag caatcgtgtt gtatcggtcg
      901 ttcattccaa gtcctcgcga agcccggaga gctattcccc caagaagtgc ggctccttta
      961 gaaactggtt gcggcccctg caagtcgcgc gggtttcctt gtgcgcggaa aggccctaac
     1021 cgcgccggcg catggaaaac tatccggagc ccgcgcgccg actggtcgcg cagatgatcg
     1081 aagccgcgga agccgagccg gcgcgcgccg tcaccttcca gggcgcgccg ggcgccaatt
     1141 cgcaccgcgc gctgatcgag catttcgagg acgcgcttcc ctatccctgc ttcagcttcg
     1201 aagacgcgct cgacgcggtg aaggaaggcc gcgccgacca tgcgatgatc ccgatcgaga
     1261 attcgctcca cgggcgcgtc gcggacattc acttcctgct gcccgaatcg gggctggcga
     1321 tcgtcggaga gcatttcctg ccgatcgagc cgtcgctgat cggccgcgcc ggccatcaga
     1381 ttcgcgaagt gatgagccac ccgcaggcgc tcggccagag ccgcaagtgg ctccgcgcgc
     1441 gcggccttcg cccggtcgtc tatgccgaca ccgccgcggc ggtcgcggcg gtggccgaaa
     1501 tgggcgattg gagcgtcgcg gccatcgccc ccgcctttgc ggccgagctt tacggcctcg
     1561 acctgctgtt cgaagggatc gccgacgagc cgcacaatat gacgcgcttc atggtgctgg
     1621 cgcgcgagca acgccggccc gggcgcgcgg acgatctgat gaccaccttg accttcgagg
     1681 tgaagaacgt ccccgccgcg ctctacaagg cgatgggcgg gtttgcgacc aacggcgtca
     1741 acatgacgaa gctggaaagc tatcagcgcg gcgcgagctt cgccgcgacc gaattctacg
     1801 ccgacatcga aggcgcgccg ggcgaccccg ccgtcgaccg cgcgctcgac gagctgcaat
     1861 tccacagcaa atgggtcaat atcctgggcg tctacgaaca ggcgcgcaaa cgcggctagc
     1921 ccttggcgag ccaccagcgg aaaagggtgt gcgcgatcgc gtagggcggg ggcggcagga
     1981 acggggcacc gggatcgccg gccatcgccg cttcgacgcc ggcgcgatcg gcccagaagg
     2041 cgtcttccag ctcggtcgtg tcgatcgcca gcgtcgggtc gtcggcggcc gcgatacagg
     2101 ccatcatcag cgatgaagga aatggccagg gctggctggt gacgtagcgc acgtcacgca
     2161 ccttcagccc cgcttcctcg aacagctcgc gcgcaaccgc ttcctcgacc gactcgcccg
     2221 gttcgaggaa gcccgccagc gccgaatagc ggccgggcgg ataacgcggc tggcggccga
     2281 ccagcacttt gccttcattc tcggcgagca tgatcacgac cggatcgacc cgcgggaaat
     2341 gctccgtgcc gcaggagccg cacttgcgcc cccagccggc gcggtgaatc gccgtgtcgc
     2401 cgctgccgca tctggcgcag aagcggtgcc gcagatgcca gtcgatcaag ctccgcgccc
     2461 cggcataggt cgaggcttcc tcgggcggca tcgcctccag cgcgcggaag atggacatcg
     2521 agcgcgcggc tgcctcgggc atcgaataat cgagcgcggc gaaatgcggc cggccgtcga
     2581 tcagcccgag cagcagcaat tccgcattgg catcggcctc ggccaggctg ccccagctca
     2641 gccgcccctc gtcgtccagc acgggatcga tgccgtcgag ccggagcagc cgcgcgcgcc
     2701 agtccgcgag cgcccggccc agtgcctcgc tgtcgttgcg aagcgtatcg gcgcggtcga
     2761 gaggagagcc ggtgaagccg ggtgtcagca tgccggaacc agaatcatgc ggctttccaa
     2821 ggcgagccgc gccgccttgt caaacacggt cggcagtccg gcttccccca gccggtcggc
     2881 cggccaccac tcgccgccag gcacattggc gcgcgccacc gctgccgcgg cgatgccgag
     2941 atcgagcgag aaatgcgtga agacgtgccg cacctgccga tcgagcagcc gccaatccgc
     3001 cgcgaacggc gcctcgtcga gggtcggcga atcgccccag gcgccggtcg gcagcgcgcg
     3061 catgccgccg agcagcccct tggccggacg cgtcaccagc agcacatgac cctcggcttc
     3121 cgcccagaag gcaatgccgc gccggtgcgg cttggcggct ttgggttgct tgaccggaaa
     3181 tgcctcgggc cgcccttccg caaaggcgcg gcaatcctcg cgcagagggc agatcgcgca
     3241 ggccggattg cgcggcgtgc agatcgtcgc gcccagatcc atcatcgcct gggcataatc
     3301 tcccgcgcgg tcgggaggcg tcagcgcagc cgcatgcgcg cg
//
